Citrus Sinensis ID: 036521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
Protein Sequence
VTCPNMMEFLESLGADMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVTN
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccHHHHHHcccccccccccccHHHHHHccHHHHHHHHHccccccccccccEEEcccccHHHHHHHHHHHHccccEEEcccccEEEEEEcccEEEEEccccEEEccEEEEEccHHHHHHHccccccHHHHHHcccccccccEEEEEccccccccccccEEEEEccccccccEEEEEEcccccccccccccccEEEEcccccccccEEEEEEEccccccHHHHHHHHHHHHHHccccEEEccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccEEEEEcccccccccEEEEEEEcHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccHHHHHHccHHHHHHHHcccHHHHHHccHHHHHHHHHHcccEEEcccccEEEEccccHHHHHHHHHHHccccccEEccccEEEEEEccccEEEEEccccEEEccEEEEEEcHHHHHHHHcccccHHHHHHHHccccccccEEEEcccccccccHHHHHHHHHccccccccEEEEHHHHHcccccccccccEEEEEcccccHHHHEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccEEEEEcccccccccEEEEEEccHHHHHHHHHHHcccHHHHHEccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHcccEEcc
Coil and Loop (DISEMBL)
VTCPNMMEFLESLGadmeisnmsfskknvlgPYFWQIIREIMKFKDDVLCYLEelennpdidrdeTLGQFIKsrgyselfQKAYlvpicgsiwscpsegimsfSAFSILSFYRNHHLLqlfgrpqwltvrsrSHSYVNKVIALLESLgcqiktgcevcsvlqydegrtevrgdgfqgfydgcimavhapdalrilgnqsTFEEKRLLGAFQYVYSDiflhrdknfmprnpaawsawnflggldgkACLTYWLNVLQnigdgetglpflvtlnpdhtpnntllkwstghpvpsvaasKASLELDHIQGKRGIWFCeayqgygfhedglKAGMIAAHGVLGkrcaslcnprnmvpSLMERGARLFVARFLKQFVCAGCLILLEevgttftfegtrrycnlrtvlrihnpQFYWKVMTHAdlgladsyidgdfsfadKEEGLLNLIMILIAIRDLDASVskvnqkrgwwtpllftsGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMdesmtyscpifkdedEDLKVAQMRKHSLQIEKARVskghgvleigcgwGTFAIEVVRQtgcnytgiTLSAEQLKYAEMKVNEAGLQVTN
Flexible Loop (DISEMBL)
VTCPNMMEFLESLGADMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELennpdidrdeTLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNqkrgwwtpllFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVTN
Low Complexity Region (SEG)
VTCPNMMEFLESLGADMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLeevgttftfegtRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVTN
Disordered region (IsUnstruct)
*********************MSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQM**HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAE************
Disordered Region (DISOPRED)
VTCPNMMEFLESLGADMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTF*****YCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDA*****NQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN*AGL****
Disordered Region (DISEMBL)
VTCPNMMEFLESLGADMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVTN
Disordered Region (DISPRO)
VTCPNMMEFLESLGADMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSK**QKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VTCPNMMEFLESLGADMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	602	2.2.26 [Sep-21-2011]
P0A9H7	382	Cyclopropane-fatty-acyl-p	N/A	no	0.282	0.445	0.341	2e-16
P0A9H8	382	Cyclopropane-fatty-acyl-p	yes	no	0.282	0.445	0.341	2e-16
P31049	394	Probable fatty acid methy	no	no	0.205	0.314	0.379	2e-16
Q49807	308	Cyclopropane mycolic acid	yes	no	0.179	0.350	0.398	5e-16
Q7U1J9	287	Cyclopropane mycolic acid	no	no	0.177	0.372	0.373	3e-14
Q79FX6	287	Cyclopropane mycolic acid	no	no	0.177	0.372	0.373	3e-14
A5U029	287	Cyclopropane mycolic acid	no	no	0.177	0.372	0.373	3e-14
P0C5C2	287	Cyclopropane mycolic acid	no	no	0.161	0.337	0.381	5e-14
A5U866	287	Cyclopropane mycolic acid	no	no	0.161	0.337	0.381	5e-14
P0A5P0	302	Cyclopropane mycolic acid	no	no	0.162	0.324	0.397	1e-13

>sp|P0A9H7|CFA_ECOLI Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 98/208 (47%), Gaps = 38/208 (18%)

Query: 402 LRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKV-- 459
           +R+ NP F+ +V+    LGL +SY+DG +   D+                LD   SKV  
Sbjct: 39  IRVKNPDFFKRVLQEGSLGLGESYMDGWWE-CDR----------------LDMFFSKVLR 81

Query: 460 ----NQKRGWWTPLLF--TSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFM 513
               NQ      P  F  T  IA A  F     +R  +         HYDL N+LF+  +
Sbjct: 82  AGLENQ-----LPHHFKDTLRIAGARLFNLQSKKRAWIVGKE-----HYDLGNDLFSRML 131

Query: 514 DESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG 573
           D  M YSC  +KD D +L+ AQ  K  +  EK ++  G  VL+IGCGWG  A  +     
Sbjct: 132 DPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYD 190

Query: 574 CNYTGITLSAEQLKYAEMKVNEAGLQVT 601
            +  G+T+SAEQ K A+ +    GL VT
Sbjct: 191 VSVVGVTISAEQQKMAQERCE--GLDVT 216

Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge.
Escherichia coli (strain K12) (taxid: 83333)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 9

>sp|P0A9H8|CFA_ECOL6 Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cfa PE=3 SV=2

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 98/208 (47%), Gaps = 38/208 (18%)

Query: 402 LRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKV-- 459
           +R+ NP F+ +V+    LGL +SY+DG +   D+                LD   SKV  
Sbjct: 39  IRVKNPDFFKRVLQEGSLGLGESYMDGWWE-CDR----------------LDMFFSKVLR 81

Query: 460 ----NQKRGWWTPLLF--TSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFM 513
               NQ      P  F  T  IA A  F     +R  +         HYDL N+LF+  +
Sbjct: 82  AGLENQ-----LPHHFKDTLRIAGARLFNLQSKKRAWIVGKE-----HYDLGNDLFSRML 131

Query: 514 DESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG 573
           D  M YSC  +KD D +L+ AQ  K  +  EK ++  G  VL+IGCGWG  A  +     
Sbjct: 132 DPFMQYSCAYWKDAD-NLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYD 190

Query: 574 CNYTGITLSAEQLKYAEMKVNEAGLQVT 601
            +  G+T+SAEQ K A+ +    GL VT
Sbjct: 191 VSVVGVTISAEQQKMAQERCE--GLDVT 216

Transfers a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 9

>sp|P31049|FAMT_PSEPU Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 470 LFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDE 529
           LFT           H  R ++ A     ISYHYD+SN  + L++D+ M YSC  F++ D 
Sbjct: 84  LFTDEDEQPPERRSHDKRTDAEA-----ISYHYDVSNAFYQLWLDQDMAYSCAYFREPDN 138

Query: 530 DLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYA 589
            L  AQ  K      K R++ G  +L++GCGWG  A    R+      GITLS EQLK  
Sbjct: 139 TLDQAQQDKFDHLCRKLRLNAGDYLLDVGCGWGGLARFAAREYDAKVFGITLSKEQLKLG 198

Query: 590 EMKVNEAGL 598
             +V   GL
Sbjct: 199 RQRVKAEGL 207

Pseudomonas putida (taxid: 303)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q49807|CMAS2_MYCLE Cyclopropane mycolic acid synthase 2 OS=Mycobacterium leprae (strain TN) GN=cmaA2 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 60/108 (55%)

Query: 488 RNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKAR 547
           R  L      +  HYD SNE F L++D SMTYSC  F+  D  L+ AQ  K  L + K  
Sbjct: 13  RKQLKPPIEAVQSHYDRSNEFFKLWLDPSMTYSCAYFERPDLTLEEAQRAKRDLALSKLG 72

Query: 548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
           +  G  +L+IGCGWG+  +  + +   N  G+TLSA QL + ++K  E
Sbjct: 73  LEPGMTLLDIGCGWGSTMLHAIEKYDVNVIGLTLSANQLAHNKLKFAE 120

Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence.

Mycobacterium leprae (taxid: 1769)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 9

>sp|Q7U1J9|MMAA2_MYCBO Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=cmaC PE=1 SV=1

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 58/107 (54%)

Query: 489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV 548
           N L     ++  HYDLS++ F LF+D + TYSC  F+ ED  L+ AQ+ K  L + K  +
Sbjct: 3   NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62

Query: 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
             G  +L+IGCGWG      + Q   N  G+TLS  Q  + +   +E
Sbjct: 63  QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDE 109

Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence.

Mycobacterium bovis (taxid: 1765)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 9

>sp|Q79FX6|MMAA2_MYCTU Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis GN=mmaA2 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 58/107 (54%)

Query: 489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV 548
           N L     ++  HYDLS++ F LF+D + TYSC  F+ ED  L+ AQ+ K  L + K  +
Sbjct: 3   NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62

Query: 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
             G  +L+IGCGWG      + Q   N  G+TLS  Q  + +   +E
Sbjct: 63  QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDE 109

Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence.

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 9

>sp|A5U029|MMAA2_MYCTA Cyclopropane mycolic acid synthase MmaA2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mmaA2 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 58/107 (54%)

Query: 489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV 548
           N L     ++  HYDLS++ F LF+D + TYSC  F+ ED  L+ AQ+ K  L + K  +
Sbjct: 3   NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62

Query: 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
             G  +L+IGCGWG      + Q   N  G+TLS  Q  + +   +E
Sbjct: 63  QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDE 109

Catalyzes the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. MmaA2 also catalyzes the biosynthesis of the cis-cyclopropanated methoxymycolates. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence.

Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 9

>sp|P0C5C2|CMAS1_MYCTU Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis GN=cmaA1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 56/97 (57%)

Query: 497 NISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLE 556
           N+  HYDLS++ F LF+D + TYSC  F+ +D  L+ AQ+ K  L + K  +  G  +L+
Sbjct: 11  NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLD 70

Query: 557 IGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593
           +GCGWG   +  V +   N  G+TLS  Q  + +  V
Sbjct: 71  VGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV 107

Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence.

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 9

>sp|A5U866|CMAS1_MYCTA Cyclopropane mycolic acid synthase 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=cmaA1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 56/97 (57%)

Query: 497 NISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLE 556
           N+  HYDLS++ F LF+D + TYSC  F+ +D  L+ AQ+ K  L + K  +  G  +L+
Sbjct: 11  NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLD 70

Query: 557 IGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593
           +GCGWG   +  V +   N  G+TLS  Q  + +  V
Sbjct: 71  VGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV 107

Catalyzes the conversion of a double bond to a cyclopropane ring at the distal position of an alpha mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence.

Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (taxid: 419947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 9

>sp|P0A5P0|CMAS2_MYCTU Cyclopropane mycolic acid synthase 2 OS=Mycobacterium tuberculosis GN=cmaA2 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 55/98 (56%)

Query: 498 ISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEI 557
           +  HYD SNE F L++D SMTYSC  F+  D  L+ AQ  K  L ++K  +  G  +L+I
Sbjct: 20  VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDI 79

Query: 558 GCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
           GCGWG+     V +   N  G+TLS  Q  + +   +E
Sbjct: 80  GCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE 117

Catalyzes the formation of trans cyclopropanated ketomycolate or methoxymycolate through the conversion of a double bond to a cyclopropane ring at the proximal position of an oxygenated mycolic acid via the transfer of a methylene group from S-adenosyl-L-methionine. In the absence of MmaA2, CmaA2 has a non-specific cis-cyclopropanating activity and is able to catalyze the conversion of a double bond to a cis cyclopropane ring at the distal position of an alpha mycolic acid. Cyclopropanated mycolic acids are key factors participating in cell envelope permeability, host immunomodulation and persistence.

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	602
224099967	862	predicted protein [Populus trichocarpa]	0.986	0.689	0.723	0.0
225433227	865	PREDICTED: uncharacterized protein LOC10	0.991	0.690	0.723	0.0
296083708	898	unnamed protein product [Vitis vinifera]	0.991	0.664	0.712	0.0
224107479	866	predicted protein [Populus trichocarpa]	0.991	0.689	0.719	0.0
359477758	865	PREDICTED: uncharacterized protein LOC10	0.991	0.690	0.713	0.0
255575825	865	methyltransferase, putative [Ricinus com	0.991	0.690	0.705	0.0
50313464	865	cyclopropane fatty acid synthase [Gossyp	0.991	0.690	0.705	0.0
147791135	874	hypothetical protein VITISV_025151 [Viti	0.970	0.668	0.704	0.0
449458900	1611	PREDICTED: uncharacterized protein LOC10	0.991	0.370	0.680	0.0
296083705	881	unnamed protein product [Vitis vinifera]	0.991	0.677	0.678	0.0

>gi|224099967|ref|XP_002311690.1| predicted protein [Populus trichocarpa] gi|222851510|gb|EEE89057.1| predicted protein [Populus trichocarpa]

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/622 (72%), Positives = 517/622 (83%), Gaps = 28/622 (4%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
           VT PNMMEF ESLG DME+S+MSFS                       KKN+L PYFW++
Sbjct: 59  VTYPNMMEFFESLGIDMELSDMSFSVSLDEGQGCEWGSRNGLSGLFAQKKNMLNPYFWKM 118

Query: 38  IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS 97
           +REI+KFKDDVL YLE LENNPD+DR+ETLG+F+KSRGYSELFQKAYL+P+CGSIWSCPS
Sbjct: 119 LREIIKFKDDVLSYLEMLENNPDVDRNETLGKFVKSRGYSELFQKAYLIPVCGSIWSCPS 178

Query: 98  EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEV 157
           EG+MSFSAFS+LSF RNHHLL++FGRPQWLTV  RSHSYV+KV   LES GCQI+TGCE+
Sbjct: 179 EGVMSFSAFSVLSFCRNHHLLEVFGRPQWLTVTRRSHSYVDKVREKLESWGCQIRTGCEI 238

Query: 158 CSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI 217
            +V   DE       DG    Y GCIMAVHAPDAL +LG Q+TF+E R+LGAFQY+YSDI
Sbjct: 239 QAVSTTDEVLCR---DGLLEMYSGCIMAVHAPDALALLGKQATFDETRILGAFQYMYSDI 295

Query: 218 FLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTP 277
           FLHRDK FMP+N AAWSAWNFLG  D K CLTYWLNVLQNI   ETGLPFLVTLNPDH P
Sbjct: 296 FLHRDKKFMPQNSAAWSAWNFLGSTDNKVCLTYWLNVLQNID--ETGLPFLVTLNPDHAP 353

Query: 278 NNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV 337
           ++TL+KWSTGHPVPSVAA+KASLELDHIQGKR IWFC AYQGYGFHEDGLK+GM+AAHG+
Sbjct: 354 DHTLVKWSTGHPVPSVAATKASLELDHIQGKRRIWFCGAYQGYGFHEDGLKSGMVAAHGL 413

Query: 338 LGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCN 397
           LG  CA L NP++M PS++E GARLFV RFL  ++  GCLILLEE GT F+FEGT + C+
Sbjct: 414 LGNSCAILSNPKHMAPSMLETGARLFVTRFLGHYISTGCLILLEEGGTVFSFEGTSKKCS 473

Query: 398 LRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVS 457
           L+TVL++HNPQFYWK+MT ADLGLAD+YI+GDFSF +K+EGLLNL MILI  RD + S S
Sbjct: 474 LKTVLKVHNPQFYWKIMTQADLGLADAYINGDFSFVNKDEGLLNLFMILIVNRDANKSAS 533

Query: 458 KVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESM 517
           K+N+KRGWWTPLLFT+GIASA +F++HISR+N+L QARRNIS HYDLSNELFALF+DE+M
Sbjct: 534 KLNKKRGWWTPLLFTAGIASAKFFIQHISRQNTLTQARRNISRHYDLSNELFALFLDETM 593

Query: 518 TYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYT 577
           TYSC +FK EDEDLK AQMRK SL IEKAR+SK H +LEIGCGWGT AIE V++TGC YT
Sbjct: 594 TYSCGVFKTEDEDLKDAQMRKISLLIEKARISKDHEILEIGCGWGTLAIEAVQRTGCKYT 653

Query: 578 GITLSAEQLKYAEMKVNEAGLQ 599
           GITLS EQLKYAEMKV EAGLQ
Sbjct: 654 GITLSEEQLKYAEMKVKEAGLQ 675

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433227|ref|XP_002281958.1| PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera]

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/622 (72%), Positives = 514/622 (82%), Gaps = 25/622 (4%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
           VT PNMMEF E+LG DME+S+MSF+                       KKN+L PYFWQ+
Sbjct: 59  VTYPNMMEFFETLGVDMELSDMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQM 118

Query: 38  IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS 97
           I +++KFKDDVL YLEELENNPD+DR++TLG FIK RGYSELFQKAYLVPIC SIWSCP+
Sbjct: 119 IGDVIKFKDDVLKYLEELENNPDMDRNQTLGDFIKCRGYSELFQKAYLVPICASIWSCPA 178

Query: 98  EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEV 157
           EG+M+FSAFS+LSF RNHHLLQLFGRPQWLTV+ RSH YVNKV   LES GCQI+TGCEV
Sbjct: 179 EGVMTFSAFSVLSFCRNHHLLQLFGRPQWLTVKWRSHYYVNKVREELESKGCQIRTGCEV 238

Query: 158 CSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI 217
            SV   D+G T   GDG Q  +DGCIMAVHAPDAL ILGN++TF+E R+LGAFQYV SDI
Sbjct: 239 VSVSTTDDGCTVFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDI 298

Query: 218 FLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTP 277
           FLH DKNFMP+NPAAWSAWNFLG +D K CLTYWLNVLQNI   +T  PFLVTLNP HTP
Sbjct: 299 FLHCDKNFMPQNPAAWSAWNFLGTIDNKVCLTYWLNVLQNID--QTSRPFLVTLNPPHTP 356

Query: 278 NNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV 337
           ++TLLKWST HP PSVAASKASLELDHIQGKRGIWFC AYQGYGFHEDGLKAGM+AAHG+
Sbjct: 357 DHTLLKWSTSHPFPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAHGM 416

Query: 338 LGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCN 397
           LGK CA L NP++MVPSL+E GARLFV RFL  ++  GCLILLEE GT +TFEG+R+ C 
Sbjct: 417 LGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSRKKCL 476

Query: 398 LRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVS 457
           L+  L+IHNPQFYWK+ T ADLGLAD+YI+GDFS  DK+EGL NL MI IA RDLD+S+S
Sbjct: 477 LKVSLKIHNPQFYWKIATQADLGLADAYINGDFSLVDKDEGLQNLFMIFIANRDLDSSLS 536

Query: 458 KVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESM 517
           ++N KRGWWTPL FT+GIASA YF +H+SR+N+L QARRNIS HYDLSNELF+LF+DE+M
Sbjct: 537 RLNNKRGWWTPLFFTAGIASARYFFQHVSRQNTLTQARRNISRHYDLSNELFSLFLDETM 596

Query: 518 TYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYT 577
           TYSC +FK E EDLKVAQ+RK SL IEK R+ K H VLEIGCGWG+ AIEVV++TGC YT
Sbjct: 597 TYSCAVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIEVVKRTGCKYT 656

Query: 578 GITLSAEQLKYAEMKVNEAGLQ 599
           GITLS EQLK+AEMKV EAGLQ
Sbjct: 657 GITLSEEQLKFAEMKVKEAGLQ 678

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083708|emb|CBI23697.3| unnamed protein product [Vitis vinifera]

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/632 (71%), Positives = 514/632 (81%), Gaps = 35/632 (5%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
           VT PNMMEF E+LG DME+S+MSF+                       KKN+L PYFWQ+
Sbjct: 82  VTYPNMMEFFETLGVDMELSDMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQM 141

Query: 38  IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS 97
           I +++KFKDDVL YLEELENNPD+DR++TLG FIK RGYSELFQKAYLVPIC SIWSCP+
Sbjct: 142 IGDVIKFKDDVLKYLEELENNPDMDRNQTLGDFIKCRGYSELFQKAYLVPICASIWSCPA 201

Query: 98  EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEV 157
           EG+M+FSAFS+LSF RNHHLLQLFGRPQWLTV+ RSH YVNKV   LES GCQI+TGCEV
Sbjct: 202 EGVMTFSAFSVLSFCRNHHLLQLFGRPQWLTVKWRSHYYVNKVREELESKGCQIRTGCEV 261

Query: 158 CSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI 217
            SV   D+G T   GDG Q  +DGCIMAVHAPDAL ILGN++TF+E R+LGAFQYV SDI
Sbjct: 262 VSVSTTDDGCTVFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDI 321

Query: 218 FLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTP 277
           FLH DKNFMP+NPAAWSAWNFLG +D K CLTYWLNVLQNI   +T  PFLVTLNP HTP
Sbjct: 322 FLHCDKNFMPQNPAAWSAWNFLGTIDNKVCLTYWLNVLQNI--DQTSRPFLVTLNPPHTP 379

Query: 278 NNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV 337
           ++TLLKWST HP PSVAASKASLELDHIQGKRGIWFC AYQGYGFHEDGLKAGM+AAHG+
Sbjct: 380 DHTLLKWSTSHPFPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAHGM 439

Query: 338 LGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCN 397
           LGK CA L NP++MVPSL+E GARLFV RFL  ++  GCLILLEE GT +TFEG+R+ C 
Sbjct: 440 LGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSRKKCL 499

Query: 398 LRTVLRIHNPQFYWK----------VMTHADLGLADSYIDGDFSFADKEEGLLNLIMILI 447
           L+  L+IHNPQFYWK          + T ADLGLAD+YI+GDFS  DK+EGL NL MI I
Sbjct: 500 LKVSLKIHNPQFYWKAWPFHLHSLQIATQADLGLADAYINGDFSLVDKDEGLQNLFMIFI 559

Query: 448 AIRDLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNE 507
           A RDLD+S+S++N KRGWWTPL FT+GIASA YF +H+SR+N+L QARRNIS HYDLSNE
Sbjct: 560 ANRDLDSSLSRLNNKRGWWTPLFFTAGIASARYFFQHVSRQNTLTQARRNISRHYDLSNE 619

Query: 508 LFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIE 567
           LF+LF+DE+MTYSC +FK E EDLKVAQ+RK SL IEK R+ K H VLEIGCGWG+ AIE
Sbjct: 620 LFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIE 679

Query: 568 VVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           VV++TGC YTGITLS EQLK+AEMKV EAGLQ
Sbjct: 680 VVKRTGCKYTGITLSEEQLKFAEMKVKEAGLQ 711

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107479|ref|XP_002314493.1| predicted protein [Populus trichocarpa] gi|222863533|gb|EEF00664.1| predicted protein [Populus trichocarpa]

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/623 (71%), Positives = 515/623 (82%), Gaps = 26/623 (4%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
           VT PNMMEF E+LG DME+S+MSFS                       KKN L PYFW++
Sbjct: 59  VTYPNMMEFFENLGIDMELSDMSFSVSLDQGKGCEWGSRNGFSGLFAQKKNALNPYFWKM 118

Query: 38  IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS 97
           +REI+KFKDDVL YLE LENNP +DR+ETLGQF+KSRGYSELFQKAYLVP+CGSIWSCPS
Sbjct: 119 LREIVKFKDDVLSYLEVLENNPVVDRNETLGQFVKSRGYSELFQKAYLVPVCGSIWSCPS 178

Query: 98  EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEV 157
           EG+M+FSAFS+LSF RNHHLLQLFGRPQWLTVR RSHSYVNKV   LES GCQI+TGCEV
Sbjct: 179 EGVMNFSAFSVLSFCRNHHLLQLFGRPQWLTVRRRSHSYVNKVREKLESWGCQIRTGCEV 238

Query: 158 CSVLQYDEGRTEVRG-DGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSD 216
            +V   DE    V   DG    Y GCIMAVHAPDAL +LG Q+TF+E R+LGAFQY+YS+
Sbjct: 239 QAVSTTDEAGCAVLCIDGLLEMYSGCIMAVHAPDALGLLGEQATFDETRILGAFQYMYSE 298

Query: 217 IFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHT 276
           IFLHRDK +MP+N AAWSAWNFLG  + K CLTYWLNVLQNI   ETGLPFLVTLNPD+ 
Sbjct: 299 IFLHRDKTYMPQNSAAWSAWNFLGSTENKVCLTYWLNVLQNID--ETGLPFLVTLNPDNA 356

Query: 277 PNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHG 336
           P++TLLKWSTG PVPSVAA+KASLELDHIQGKR IWF  AYQGYGF+EDGLK+GM+AAHG
Sbjct: 357 PDHTLLKWSTGRPVPSVAATKASLELDHIQGKRRIWFGGAYQGYGFYEDGLKSGMVAAHG 416

Query: 337 VLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYC 396
           +LGK C  L NP++MVPS++E GARLFV RFL   +  GCL LLE+ GT F+FEGT + C
Sbjct: 417 LLGKSCDILRNPKHMVPSMLETGARLFVTRFLGHHISTGCLTLLEDGGTVFSFEGTSKKC 476

Query: 397 NLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASV 456
           +L+TVL++HNPQFYWK+MT ADLGLAD+YI+GDFSF DK+EGL+NL MILI  RD D S 
Sbjct: 477 SLKTVLKVHNPQFYWKIMTQADLGLADAYINGDFSFVDKDEGLINLFMILIVNRDADNST 536

Query: 457 SKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDES 516
           SK+N+KRGWWTPLLFT+GIASA +F++H+SR+N+L QARRNIS HYDLSNELFALF+DE+
Sbjct: 537 SKLNKKRGWWTPLLFTAGIASAKFFIQHVSRQNTLTQARRNISRHYDLSNELFALFLDET 596

Query: 517 MTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNY 576
           MTYSC +FK EDEDLK AQ+RK SL IEKARV+K H VLEIGCGWGT AIEVV++TGC Y
Sbjct: 597 MTYSCALFKKEDEDLKAAQIRKISLLIEKARVNKDHEVLEIGCGWGTLAIEVVQRTGCKY 656

Query: 577 TGITLSAEQLKYAEMKVNEAGLQ 599
           TGITLS EQLKYAE+KV EAGLQ
Sbjct: 657 TGITLSEEQLKYAELKVKEAGLQ 679

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477758|ref|XP_002281923.2| PREDICTED: uncharacterized protein LOC100242555 [Vitis vinifera]

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/622 (71%), Positives = 509/622 (81%), Gaps = 25/622 (4%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
           VT PNM+EF E+LG DME+S MSF+                       KKN+L PYFWQ+
Sbjct: 59  VTYPNMLEFFETLGIDMELSAMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQM 118

Query: 38  IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS 97
           I E++KFKDDVL YLEELENNPDIDR++TLG FIK RGYSELFQKAYLVPIC SIW C +
Sbjct: 119 IGEMIKFKDDVLKYLEELENNPDIDRNQTLGDFIKCRGYSELFQKAYLVPICASIWPCSA 178

Query: 98  EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEV 157
           EG+MSFSAF +LSF RNHHLLQLFG PQWLTV+  SH YVNKV   LES GCQI+T CEV
Sbjct: 179 EGVMSFSAFLVLSFCRNHHLLQLFGHPQWLTVKCCSHYYVNKVREELESKGCQIRTACEV 238

Query: 158 CSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI 217
            SV   D+G T   GDG Q  +DGCIMAVHAPDAL ILGN++TF+E R+LGAFQYV SDI
Sbjct: 239 VSVSTTDDGCTIFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDI 298

Query: 218 FLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTP 277
           FLHRDKNFMP+NPAAWSAWNFLG ++ K CL+YWLNVLQNI   +T LPFLVTLNP HTP
Sbjct: 299 FLHRDKNFMPQNPAAWSAWNFLGTIENKVCLSYWLNVLQNID--QTSLPFLVTLNPSHTP 356

Query: 278 NNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV 337
           ++TLLKWST HPVPSVAASKASLELDHIQGKRGIWFC AYQGYGFHEDGLKAGM+AAH +
Sbjct: 357 DHTLLKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAHSI 416

Query: 338 LGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCN 397
           LGK CA L NP++MVPSL+E GARLFV RFL  ++  GCLILLEE GT +TFEG+ + C 
Sbjct: 417 LGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSGKKCL 476

Query: 398 LRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVS 457
           L+  L+IHNPQFYWKV T ADLGLAD+YI+GDFS  DK+EGL +L MI IA RDLD+S+S
Sbjct: 477 LKVALKIHNPQFYWKVATQADLGLADAYINGDFSLVDKDEGLQSLFMIFIANRDLDSSLS 536

Query: 458 KVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESM 517
           ++N+KRGWWTPL FT+GIASA Y+ +H+SR+N+L QARRN+S HYDLSNELF+LF+DE+M
Sbjct: 537 RLNKKRGWWTPLFFTAGIASAKYYFQHVSRQNTLTQARRNVSRHYDLSNELFSLFLDETM 596

Query: 518 TYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYT 577
           TYSC +FK E EDLKVAQ+RK SL IEKAR+ K H VLEIGCGWG+ AIEVV+QTGC YT
Sbjct: 597 TYSCAVFKTEGEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGWGSLAIEVVKQTGCKYT 656

Query: 578 GITLSAEQLKYAEMKVNEAGLQ 599
           GIT S EQLK+AEMKV EAGLQ
Sbjct: 657 GITPSKEQLKFAEMKVKEAGLQ 678

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575825|ref|XP_002528810.1| methyltransferase, putative [Ricinus communis] gi|223531722|gb|EEF33544.1| methyltransferase, putative [Ricinus communis]

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/622 (70%), Positives = 511/622 (82%), Gaps = 25/622 (4%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
           VT PNMMEF ESLG DME+S+MSFS                       K N   PYFWQ+
Sbjct: 59  VTYPNMMEFFESLGVDMELSDMSFSVSLDNGKGYEWGSRNGLPGLFAQKTNAFNPYFWQM 118

Query: 38  IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS 97
           IRE++KFKDDVL YLE LENNPDIDR+ETLG FIKSRGYSELFQKAYLVP+CGSIWSCPS
Sbjct: 119 IREVIKFKDDVLSYLEVLENNPDIDRNETLGNFIKSRGYSELFQKAYLVPMCGSIWSCPS 178

Query: 98  EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEV 157
           E +MSFSA+SILSF RNHHLLQLFGRPQWLTV+ RSHSYV+KV   LES GC I+TG EV
Sbjct: 179 EKVMSFSAYSILSFCRNHHLLQLFGRPQWLTVKCRSHSYVHKVREKLESWGCVIRTGHEV 238

Query: 158 CSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI 217
             V   D+G T + GDG +  Y  CI+ VHAPDAL++LGNQ+TF+EKR+LGAFQY+YS+I
Sbjct: 239 HLVSTNDKGCTVLCGDGSEEQYSRCIIGVHAPDALKLLGNQATFDEKRVLGAFQYLYSEI 298

Query: 218 FLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTP 277
           FLHRDK FMP+ P AWSAWNFLG  D K CLTYWLNVLQN+G  ET LPFLVTLNPDHTP
Sbjct: 299 FLHRDKKFMPQKPTAWSAWNFLGNTDNKVCLTYWLNVLQNLG--ETNLPFLVTLNPDHTP 356

Query: 278 NNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV 337
           +NTLLKW+TGHPVPSVAASKASLEL+HIQG+RG+WFC AYQGYGFHEDGLK+GM+AAH +
Sbjct: 357 DNTLLKWTTGHPVPSVAASKASLELEHIQGRRGLWFCGAYQGYGFHEDGLKSGMVAAHSL 416

Query: 338 LGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCN 397
           L K CA L NP++MVPSL+E GARLFV+RFL Q++  G +ILLEE GT FTFEGT + C 
Sbjct: 417 LEKSCAILSNPKHMVPSLLETGARLFVSRFLGQYISTGRVILLEEGGTIFTFEGTAKKCF 476

Query: 398 LRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVS 457
            +TV+++HNPQFYWK+MT ADLGLAD+YI+GDFSF DK+EGLLNL M+LI  RD +   S
Sbjct: 477 SQTVMKVHNPQFYWKIMTQADLGLADAYINGDFSFVDKDEGLLNLFMVLIVNRDANKPES 536

Query: 458 KVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESM 517
           ++N+++GWWTP+LFT+ IASA +F RH+SR+NSL QARRNIS HYDLSN+LF+LF+DE+M
Sbjct: 537 ELNKRKGWWTPMLFTASIASAKFFFRHVSRQNSLTQARRNISRHYDLSNDLFSLFLDETM 596

Query: 518 TYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYT 577
           TYS  +FK EDEDLK AQMRK SL I KAR++K H +LEIGCGWGT AIEVV++TGC YT
Sbjct: 597 TYSSAVFKTEDEDLKAAQMRKISLLIGKARINKEHEILEIGCGWGTLAIEVVKRTGCKYT 656

Query: 578 GITLSAEQLKYAEMKVNEAGLQ 599
           GITLS EQLKYAE +V EAGLQ
Sbjct: 657 GITLSEEQLKYAEERVKEAGLQ 678

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50313464|gb|AAT74602.1| cyclopropane fatty acid synthase [Gossypium hirsutum]

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/622 (70%), Positives = 503/622 (80%), Gaps = 25/622 (4%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
           VT PNMME  ESLG DME  +MS S                       K N+  PYFWQ+
Sbjct: 59  VTYPNMMELFESLGIDMEPFDMSLSVSLNEGKGCEWGSRNGLSALFAQKSNLFNPYFWQM 118

Query: 38  IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS 97
           +REI+KFK+DV+ YLE LENNPDIDR+ETLGQFIKS+GYS+LFQKAYLVP+CGSIWSCP+
Sbjct: 119 LREILKFKNDVISYLELLENNPDIDRNETLGQFIKSKGYSDLFQKAYLVPVCGSIWSCPT 178

Query: 98  EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEV 157
           E +M FSAFSILSF RNHHLLQ+FGRPQW+TVR RSH YVNKV   LES GCQI+TGCEV
Sbjct: 179 ERVMDFSAFSILSFCRNHHLLQIFGRPQWMTVRWRSHRYVNKVREELESTGCQIRTGCEV 238

Query: 158 CSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI 217
            SVL   EG T + GD     Y GCIMAVHAP ALR+LGNQ+T++E  +LGAFQYVYSDI
Sbjct: 239 HSVLSDAEGCTVLCGDDSHELYQGCIMAVHAPYALRLLGNQATYDESTVLGAFQYVYSDI 298

Query: 218 FLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTP 277
           +LHRDKN MP+NPAAWSAWNFLG  D    LTYWLNVLQN+G  ET LPFLVTLNPD+TP
Sbjct: 299 YLHRDKNLMPKNPAAWSAWNFLGSTDKNVSLTYWLNVLQNLG--ETSLPFLVTLNPDYTP 356

Query: 278 NNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV 337
            +TLLKW TGHPVPSVAA+KASLELD IQGKRGIWFC AY GYGFHEDGLKAGMIAA+G+
Sbjct: 357 KHTLLKWRTGHPVPSVAATKASLELDRIQGKRGIWFCGAYLGYGFHEDGLKAGMIAANGL 416

Query: 338 LGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCN 397
           LGK C  L NP++MVPSLME GARLFV RFL  F+  GC+ILLEE GT FTFEGT   C+
Sbjct: 417 LGKSCNILSNPKHMVPSLMETGARLFVTRFLSHFISTGCVILLEEGGTMFTFEGTSNKCS 476

Query: 398 LRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVS 457
           L+TV+++H+P FYWKVMT ADLGLADSYI+GDFSF DK++GLLNL+MILIA RDL +S S
Sbjct: 477 LKTVIKVHSPHFYWKVMTEADLGLADSYINGDFSFVDKKDGLLNLVMILIANRDLISSNS 536

Query: 458 KVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESM 517
           K+++KRGWWTPLLFT+G+ SA YF +H+ R+N+L QARRNIS HYDLSN+LFALF+DE+M
Sbjct: 537 KLSKKRGWWTPLLFTAGLTSAKYFFKHVLRQNTLTQARRNISRHYDLSNDLFALFLDETM 596

Query: 518 TYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYT 577
           TYSC +FK EDEDLK AQ RK SL IEKAR+   H +LEIGCGW + AIEVV++TGC YT
Sbjct: 597 TYSCAVFKTEDEDLKDAQHRKISLLIEKARIDSKHEILEIGCGWXSLAIEVVKRTGCKYT 656

Query: 578 GITLSAEQLKYAEMKVNEAGLQ 599
           GITLS EQLK AE +V EAGLQ
Sbjct: 657 GITLSEEQLKLAEKRVKEAGLQ 678

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791135|emb|CAN68017.1| hypothetical protein VITISV_025151 [Vitis vinifera]

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/622 (70%), Positives = 502/622 (80%), Gaps = 38/622 (6%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
           VT PNMMEF E+LG BME+S+MSF+                       KKN+L PYFWQ+
Sbjct: 59  VTYPNMMEFFETLGVBMELSDMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQM 118

Query: 38  IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS 97
           I +++KFKDDVL YLEELENNPD+DR++TLG FIK RGYSELFQKAYLVPIC SIWSCP+
Sbjct: 119 IGDVIKFKDDVLKYLEELENNPDMDRNQTLGDFIKCRGYSELFQKAYLVPICASIWSCPA 178

Query: 98  EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEV 157
           EG+M+FSAFS+LSF RNHHLLQLFGRPQWLTV+ RSH YV+KV   LES GC+I+TGCEV
Sbjct: 179 EGVMTFSAFSVLSFCRNHHLLQLFGRPQWLTVKWRSHYYVHKVREELESKGCRIRTGCEV 238

Query: 158 CSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI 217
            SV   D+G T   GDG Q  +DGCIMAVHAPDAL ILGN++TF+E R+LGAFQYV SDI
Sbjct: 239 VSVSTTDDGCTVFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSDI 298

Query: 218 FLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTP 277
           FLH DKNFMP+NPAAWSAWNFLG +D K CLTYWLNVLQNI   +T  PFLVTLNP HTP
Sbjct: 299 FLHCDKNFMPQNPAAWSAWNFLGTIDNKVCLTYWLNVLQNI--DQTSRPFLVTLNPPHTP 356

Query: 278 NNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV 337
           ++TLLKWST HP PSVAASKASLELDHIQGKRGIWFC AYQGYGFHEDGLKAGM+AAHG+
Sbjct: 357 DHTLLKWSTSHPFPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKAGMVAAHGM 416

Query: 338 LGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCN 397
           LGK CA L NP++MVPSL+E GARLFV RFL  ++  GCLILLEE GT +T EG+R+ C 
Sbjct: 417 LGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTVEGSRKKCL 476

Query: 398 LRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVS 457
           L             K+ T ADLGLAD+YI+GDFS  DK+EGL NL MI IA RDLD+S+S
Sbjct: 477 L-------------KIATQADLGLADAYINGDFSLVDKDEGLQNLFMIFIANRDLDSSLS 523

Query: 458 KVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESM 517
           ++N KRGWWTPL FT+GIASA YF +H+SR+N+L QARRNIS HYDLSNELF+LF+DE+M
Sbjct: 524 RLNNKRGWWTPLFFTAGIASAKYFFQHVSRQNTLTQARRNISRHYDLSNELFSLFLDETM 583

Query: 518 TYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYT 577
           TYSC +FK E EDLKVAQ+RK SL IEK R+ K H VLEIGCGWG+ AIEVV+QTGC YT
Sbjct: 584 TYSCAVFKTEREDLKVAQLRKISLLIEKVRIDKKHEVLEIGCGWGSLAIEVVKQTGCKYT 643

Query: 578 GITLSAEQLKYAEMKVNEAGLQ 599
           GITLS EQLK+AEMKV EAGLQ
Sbjct: 644 GITLSEEQLKFAEMKVKEAGLQ 665

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458900|ref|XP_004147184.1| PREDICTED: uncharacterized protein LOC101213850 [Cucumis sativus]

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/622 (68%), Positives = 495/622 (79%), Gaps = 25/622 (4%)

Query: 1    VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
            VT PNMMEF E+LG +MEIS+MSFS                       KKN+L PYFWQ+
Sbjct: 832  VTYPNMMEFFENLGVEMEISDMSFSVSLDRGRGCEWGSRNGLSSLFSQKKNLLNPYFWQM 891

Query: 38   IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS 97
            IREI+KFKDDV  YLE LENN DIDR+ETLGQFIKS GYSELFQ  YL+P+CGSIWSCPS
Sbjct: 892  IREIVKFKDDVTNYLEVLENNSDIDRNETLGQFIKSMGYSELFQNGYLIPMCGSIWSCPS 951

Query: 98   EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEV 157
            EG++SFSAFS+LSF RNHHLLQLFGRPQWLTV+ RSHSYV KV  +LES GCQI+T  EV
Sbjct: 952  EGVLSFSAFSVLSFCRNHHLLQLFGRPQWLTVKGRSHSYVKKVQEVLESHGCQIRTSSEV 1011

Query: 158  CSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI 217
             S+   D+G     GDG Q  +D CI+A HAPD LRILGN++T +E R+LGAFQY YSDI
Sbjct: 1012 NSISTMDKGCKVSYGDGLQEMFDACIIATHAPDTLRILGNEATSDELRVLGAFQYAYSDI 1071

Query: 218  FLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTP 277
            FLHRDKN MP+NPAAWSAWNFLG  D K CLTYWLNVLQN+G  ETG PFLVTLNPD  P
Sbjct: 1072 FLHRDKNLMPQNPAAWSAWNFLGNTDKKVCLTYWLNVLQNLG--ETGPPFLVTLNPDKEP 1129

Query: 278  NNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV 337
             N LLKWSTGHP+PSVAASKAS E   IQG R IWFC AYQGYGFHEDGLKAG++AA  +
Sbjct: 1130 KNILLKWSTGHPIPSVAASKASNEFHSIQGNRRIWFCGAYQGYGFHEDGLKAGIVAAQNL 1189

Query: 338  LGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTTFTFEGTRRYCN 397
            LG     L NP++M PSL++ GARLFV RFL Q++ +G L L+EE GT FTFEGT + C 
Sbjct: 1190 LGNSLTLLSNPKHMAPSLVDTGARLFVTRFLGQYITSGSLTLIEEGGTIFTFEGTDKKCL 1249

Query: 398  LRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVS 457
             + V+++H+PQFYWK+MT ADLGLAD+YI+GDFSF DK+EGLLN  +I+IA RD ++S++
Sbjct: 1250 PKVVVKVHSPQFYWKIMTRADLGLADAYINGDFSFVDKDEGLLNFFLIIIASRDTNSSIA 1309

Query: 458  KVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESM 517
            K  +KRGWWTP LFT+ IASA YF +H SR+N+L QARRNIS HYDLSNELF+LF+D++M
Sbjct: 1310 KQKKKRGWWTPPLFTACIASAKYFFQHASRQNTLTQARRNISRHYDLSNELFSLFLDDTM 1369

Query: 518  TYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYT 577
            TYSC IFK E+EDLKVAQMRK SL IEKAR++K H VLEIGCGWG+ AIE+V++TGC+YT
Sbjct: 1370 TYSCAIFKGENEDLKVAQMRKISLLIEKARINKNHHVLEIGCGWGSLAIEIVKKTGCHYT 1429

Query: 578  GITLSAEQLKYAEMKVNEAGLQ 599
            GITLS EQLKYAE +V +A LQ
Sbjct: 1430 GITLSEEQLKYAEKRVKDANLQ 1451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083705|emb|CBI23694.3| unnamed protein product [Vitis vinifera]

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/638 (67%), Positives = 501/638 (78%), Gaps = 41/638 (6%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS-----------------------KKNVLGPYFWQI 37
           VT PNM+EF E+LG DME+S MSF+                       KKN+L PYFWQ+
Sbjct: 59  VTYPNMLEFFETLGIDMELSAMSFAVSLDEGRGCEWGSRNGLSSLFAQKKNILNPYFWQM 118

Query: 38  IREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSEL-FQKAYLVPICGSIWSCP 96
           I E++KFKDDVL YLEELENNPDIDR++TLG FIK   YS +      +VPIC SIW C 
Sbjct: 119 IGEMIKFKDDVLKYLEELENNPDIDRNQTLGDFIKCPLYSVISLSFKLIVPICASIWPCS 178

Query: 97  SEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCE 156
           +EG+MSFSAF +LSF RNHHLLQLFG PQWLTV+  SH YVNKV   LES GCQI+T CE
Sbjct: 179 AEGVMSFSAFLVLSFCRNHHLLQLFGHPQWLTVKCCSHYYVNKVREELESKGCQIRTACE 238

Query: 157 VCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSD 216
           V SV   D+G T   GDG Q  +DGCIMAVHAPDAL ILGN++TF+E R+LGAFQYV SD
Sbjct: 239 VVSVSTTDDGCTIFCGDGSQEMHDGCIMAVHAPDALNILGNKATFDEMRVLGAFQYVSSD 298

Query: 217 IFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHT 276
           IFLHRDKNFMP+NPAAWSAWNFLG ++ K CL+YWLNVLQNI   +T LPFLVTLNP HT
Sbjct: 299 IFLHRDKNFMPQNPAAWSAWNFLGTIENKVCLSYWLNVLQNID--QTSLPFLVTLNPSHT 356

Query: 277 PNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLK-------- 328
           P++TLLKWST HPVPSVAASKASLELDHIQGKRGIWFC AYQGYGFHEDGLK        
Sbjct: 357 PDHTLLKWSTSHPVPSVAASKASLELDHIQGKRGIWFCGAYQGYGFHEDGLKVAIIKHPC 416

Query: 329 --AGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLEEVGTT 386
             AGM+AAH +LGK CA L NP++MVPSL+E GARLFV RFL  ++  GCLILLEE GT 
Sbjct: 417 SQAGMVAAHSILGKGCAVLNNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTI 476

Query: 387 FTFEGTRRYCNLRTVLRIHNPQFYWK-----VMTHADLGLADSYIDGDFSFADKEEGLLN 441
           +TFEG+ + C L+  L+IHNPQFYWK     + T ADLGLAD+YI+GDFS  DK+EGL +
Sbjct: 477 YTFEGSGKKCLLKVALKIHNPQFYWKESKKRIATQADLGLADAYINGDFSLVDKDEGLQS 536

Query: 442 LIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYH 501
           L MI IA RDLD+S+S++N+KRGWWTPL FT+GIASA Y+ +H+SR+N+L QARRN+S H
Sbjct: 537 LFMIFIANRDLDSSLSRLNKKRGWWTPLFFTAGIASAKYYFQHVSRQNTLTQARRNVSRH 596

Query: 502 YDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGW 561
           YDLSNELF+LF+DE+MTYSC +FK E EDLKVAQ+RK SL IEKAR+ K H VLEIGCGW
Sbjct: 597 YDLSNELFSLFLDETMTYSCAVFKTEGEDLKVAQLRKISLLIEKARIDKKHEVLEIGCGW 656

Query: 562 GTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           G+ AIEVV+QTGC YTGIT S EQLK+AEMKV EAGLQ
Sbjct: 657 GSLAIEVVKQTGCKYTGITPSKEQLKFAEMKVKEAGLQ 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	602
TAIR|locus:2088070	867	AT3G23530 [Arabidopsis thalian	0.965	0.670	0.672	2.1e-224
TAIR|locus:2088712	867	AT3G23510 [Arabidopsis thalian	0.965	0.670	0.671	5.7e-224
TAIR|locus:2088717	461	AT3G23470 [Arabidopsis thalian	0.446	0.583	0.605	8e-85
TAIR|locus:2090915	305	AT3G23460 [Arabidopsis thalian	0.327	0.645	0.542	8.6e-56
UNIPROTKB|Q48MU4	415	PSPPH_1007 "Uncharacterized pr	0.501	0.727	0.344	2e-47
UNIPROTKB|Q0C192	438	HNE_1797 "Putative uncharacter	0.534	0.735	0.336	2.3e-46
UNIPROTKB|Q5LTD2	447	SPO1482 "Uncharacterized prote	0.488	0.657	0.350	1.5e-44
TIGR_CMR|SPO_1482	447	SPO_1482 "conserved hypothetic	0.488	0.657	0.350	1.5e-44
UNIPROTKB|Q9KSY6	426	VC_1120 "Putative uncharacteri	0.493	0.697	0.334	4.8e-39
TIGR_CMR|VC_1120	426	VC_1120 "conserved hypothetica	0.493	0.697	0.334	4.8e-39

TAIR|locus:2088070 AT3G23530 [Arabidopsis thaliana (taxid:3702)]

 Score = 2096 (742.9 bits), Expect = 2.1e-224, Sum P(2) = 2.1e-224
 Identities = 395/587 (67%), Positives = 463/587 (78%)

Query:    14 GADMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKS 73
             G+   +S +   KKNVL PYFWQ+IREI++FK+DVL Y+EELE NPDIDR ETLG+F+ S
Sbjct:    96 GSRNGVSGLFAQKKNVLNPYFWQMIREIVRFKEDVLKYIEELEGNPDIDRKETLGEFLNS 155

Query:    74 RGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRS 133
             RGYSELFQ+AYLVPICGSIWSCPS+G++SFSA+S+LSF  NHHLLQ+FGRPQWLTV  RS
Sbjct:   156 RGYSELFQQAYLVPICGSIWSCPSDGVLSFSAYSVLSFCCNHHLLQIFGRPQWLTVAGRS 215

Query:   134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR-GDGFQGFYDGCIMAVHAPDAL 192
              +YV KV   LE LGC+I+T C+V SV   + G   V  GDG +  +D CI+A+HAPDAL
Sbjct:   216 QTYVAKVRTELERLGCRIRTSCDVKSVSTSENGCVTVTSGDGSKEVFDRCILAMHAPDAL 275

Query:   193 RILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWL 252
             R+LG + TF+E R+LGAFQYVYSDI+LH D + MPRN AAWSAWNFLG  + K C+TYWL
Sbjct:   276 RLLGEEVTFDESRVLGAFQYVYSDIYLHHDIDLMPRNQAAWSAWNFLGSTEKKVCVTYWL 335

Query:   253 NVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIW 312
             N+LQN+G  E   PF VTLNPD TP  TLLKW+TGHPVPSVAA  AS EL  IQGKR IW
Sbjct:   336 NILQNLG--ENSEPFFVTLNPDETPKKTLLKWTTGHPVPSVAAWTASQELHKIQGKRNIW 393

Query:   313 FCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFV 372
             FC AYQGYGFHEDGLKAGM AA G+LGK  A L NPR+MVPSL E GARLFV RFL QF+
Sbjct:   394 FCGAYQGYGFHEDGLKAGMAAARGLLGKETALLNNPRHMVPSLTETGARLFVTRFLGQFI 453

Query:   373 CAGCLILLXXXXXXXXXXXXRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSF 432
               G + +L               C L+++L+IH+PQFYWKVMT ADLGLAD+YI+GDFSF
Sbjct:   454 STGSVTILEEGGTMFTFGGKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYINGDFSF 513

Query:   433 ADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLA 492
              DKE GLLNLIMILIA RD  +++SK   KRGWWTP+  T+G+ASA YFL+H+SR+N+L 
Sbjct:   514 VDKESGLLNLIMILIANRDTKSNLSK---KRGWWTPMFLTAGLASAKYFLKHVSRQNTLT 570

Query:   493 QARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGH 552
             QARRNIS HYDLSNELF  F+D++MTYS  +FK +DEDL+ AQMRK SL I+KAR+ K H
Sbjct:   571 QARRNISRHYDLSNELFGFFLDDTMTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDH 630

Query:   553 GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
              VLEIGCGWGT AIEVVR+TGC YTGITLS EQLKYAE KV EAGLQ
Sbjct:   631 EVLEIGCGWGTLAIEVVRRTGCKYTGITLSIEQLKYAEEKVKEAGLQ 677

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISS

GO:0008825 "cyclopropane-fatty-acyl-phospholipid synthase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2088712 AT3G23510 [Arabidopsis thaliana (taxid:3702)]

 Score = 2096 (742.9 bits), Expect = 5.7e-224, Sum P(2) = 5.7e-224
 Identities = 394/587 (67%), Positives = 465/587 (79%)

Query:    14 GADMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKS 73
             G+   +S +   KKNVL PYFWQ+IREI++FK+DVL Y+E+LE NPDIDR ETLG+F+ +
Sbjct:    96 GSRNGVSGLFAQKKNVLNPYFWQMIREIVRFKEDVLNYIEKLEGNPDIDRKETLGEFLNT 155

Query:    74 RGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRS 133
             RGYSELFQ+AYLVPICGSIWSCPS+G++SFSA+S+LSF  NHHLLQ+FGRPQWLTV  RS
Sbjct:   156 RGYSELFQQAYLVPICGSIWSCPSDGVLSFSAYSVLSFCCNHHLLQIFGRPQWLTVAGRS 215

Query:   134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR-GDGFQGFYDGCIMAVHAPDAL 192
              +YV KV A LE LGC+I+T C+V SV   + G   V  GDG +  +D CI+A+HAPDAL
Sbjct:   216 QTYVAKVRAELERLGCKIRTSCDVKSVSTSENGCVTVTSGDGSEEVFDRCILAMHAPDAL 275

Query:   193 RILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWL 252
             R+LG + TF+E R+LGAFQYVYSDI+LH D + MPRN AAWSAWNFLG  + K C+TYWL
Sbjct:   276 RLLGEEVTFDESRVLGAFQYVYSDIYLHHDIDLMPRNKAAWSAWNFLGSTEKKVCVTYWL 335

Query:   253 NVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIW 312
             N+LQN+G  E   PF VTLNPD TP   LLKW+TGHPVPSVAAS AS EL  IQGKR IW
Sbjct:   336 NILQNLG--ENSEPFFVTLNPDETPKKALLKWTTGHPVPSVAASIASQELHQIQGKRNIW 393

Query:   313 FCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFV 372
             FC AYQGYGFHEDGLKAGM AA G+LGK  A L NPR+MVPSL E GARLFV RFL QF+
Sbjct:   394 FCGAYQGYGFHEDGLKAGMAAARGLLGKETALLNNPRHMVPSLTETGARLFVTRFLGQFI 453

Query:   373 CAGCLILLXXXXXXXXXXXXRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSF 432
               G + +L               C L+++L+IH+PQFYWKVMT ADLGLAD+YI+GDFSF
Sbjct:   454 STGSVTILEEGGTMFTFGGKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYINGDFSF 513

Query:   433 ADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLA 492
              DKE GLLNLIMILIA RD  ++++K   KRGWWTP+  T+G+ASA YFL+H+SR+N+L 
Sbjct:   514 VDKESGLLNLIMILIANRDTKSNLTK---KRGWWTPMFLTAGLASAKYFLKHVSRQNTLT 570

Query:   493 QARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGH 552
             QARRNIS HYDLSNELF LF+D++MTYS  +FK +DEDL+ AQMRK SL I+KAR+ K H
Sbjct:   571 QARRNISRHYDLSNELFGLFLDDTMTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDH 630

Query:   553 GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
              VLEIGCGWGT AIEVVR+TGC YTGITLS EQLKYAE KV EAGLQ
Sbjct:   631 EVLEIGCGWGTLAIEVVRRTGCKYTGITLSIEQLKYAEEKVKEAGLQ 677

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISS

GO:0008825 "cyclopropane-fatty-acyl-phospholipid synthase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2088717 AT3G23470 [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 163/269 (60%), Positives = 200/269 (74%)

Query:   331 MIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLXXXXXXXXXX 390
             M+ A  +L K    L   ++MV SL E GARLFV RFL+QF+  GC+ +L          
Sbjct:     1 MVIAQSLLWKEITLLKKIQHMVLSLTESGARLFVTRFLEQFISIGCVTILEEGGTMFIFG 60

Query:   391 XXRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIR 450
                  C L+++L+IH+PQFYWKVMT ADLGLAD+YI GDFSF DK+ GLLNLIMILIA R
Sbjct:    61 EKDSTCPLKSILKIHSPQFYWKVMTQADLGLADAYISGDFSFVDKDSGLLNLIMILIANR 120

Query:   451 DLDASVSKVNQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFA 510
             D  +  S + +KRGWWTP+  T+G+AS  Y+L+H+ ++N+L QAR+NIS HYDLSNE F 
Sbjct:   121 DQRSPKSNLVKKRGWWTPVFLTAGLASVKYYLKHVLKQNTLTQARKNISSHYDLSNEFFG 180

Query:   511 LFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVR 570
             LFMD++M YS  IFK E+ED + AQMRK SL IEKAR+ K H VLE+GCGWGTFAIEVV+
Sbjct:   181 LFMDDTMMYSSAIFKSENEDPRTAQMRKISLLIEKARIEKNHEVLEMGCGWGTFAIEVVK 240

Query:   571 QTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
             +TGC YTGITLS EQLKYA+ KV EAGLQ
Sbjct:   241 RTGCKYTGITLSIEQLKYAKAKVKEAGLQ 269

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISS

GO:0008825 "cyclopropane-fatty-acyl-phospholipid synthase activity" evidence=ISS

TAIR|locus:2090915 AT3G23460 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 109/201 (54%), Positives = 150/201 (74%)

Query:   345 LCNPRNMVPSLMERGARLFVARFLKQFVCAGCLILLXXXXXXXXXXXXRRYCNLRTVLRI 404
             + N ++MV SL+E+ AR F  RFL  F+  GC+ +              R C+L++ L I
Sbjct:     5 MSNRKHMVMSLIEKAARFFFTRFLTHFISTGCVTIFEGGNMVTFEGKDSR-CHLKSELEI 63

Query:   405 HNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNQKRG 464
             H+PQFYWKVMT  DLGLAD+YI+GDFSF +KE GLLNLIMILIA ++L+++++   +KRG
Sbjct:    64 HSPQFYWKVMTQVDLGLADAYINGDFSFVNKETGLLNLIMILIASKELNSNLA---EKRG 120

Query:   465 WWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIF 524
              WTP+  T+G++SA +FL+H+ R+N+L QARRNIS HYDLSNELF +F+D++M+YS  +F
Sbjct:   121 RWTPIFLTTGLSSAKHFLKHLYRQNNLTQARRNISRHYDLSNELFTIFLDDTMSYSSGVF 180

Query:   525 KDEDEDLKVAQMRKHSLQIEK 545
             K +DE+LK+AQMRK  L IEK
Sbjct:   181 KSDDEELKIAQMRKIYLLIEK 201

GO:0005737 "cytoplasm" evidence=ISM

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q48MU4 PSPPH_1007 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 465 (168.7 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
 Identities = 110/319 (34%), Positives = 170/319 (53%)

Query:    21 NMSFSKK-NVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSEL 79
             N  F+++ N+L P FW ++R+I++F    +   ++LEN   I  D TLG+++KS GY + 
Sbjct:   102 NSLFAQRSNLLSPRFWGMLRDILRFNRQSV---DDLENQR-IAADTTLGEYLKSGGYGQR 157

Query:    80 FQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNK 139
             F   Y+VP+  +IWS     ++ F     + F++NH LL +  RPQW  +   S SYV  
Sbjct:   158 FIDHYIVPMGAAIWSMSLADMLGFPLQFFVRFFKNHGLLSVTHRPQWCVIEGGSRSYVEP 217

Query:   140 VIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQS 199
             + A       +I+  C V  V +  +G T     G + F D  + A H+  AL +L   S
Sbjct:   218 LTASFRE---RIRLSCPVTRVERDSDGVTLQSAMGSERF-DKVVFACHSDQALALLAKPS 273

Query:   200 TFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNF-LGGLDGK-ACLTYWLNVLQN 257
             + E+  +LGA +Y  +D+ LH D   +P    AW++WN+ LGG + + A +TY +N+LQ 
Sbjct:   274 SAEQS-VLGALRYAENDVVLHTDTRLLPERKLAWASWNYRLGGSEQQSAAVTYDMNILQG 332

Query:   258 IGDGETGLPFLVTLNPDHT--PNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCE 315
             I D +T   F V+LN      P   L ++   HP  S+ A  A    + I G    W+C 
Sbjct:   333 I-DSDT--TFCVSLNQTAAIDPKKILGRYRYAHPQYSLDAIAAQARWEEINGVDHTWYCG 389

Query:   316 AYQGYGFHEDGLKAGMIAA 334
             AY   GFHEDG+ +G+  A
Sbjct:   390 AYWANGFHEDGVVSGLRVA 408

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C192 HNE_1797 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 121/360 (33%), Positives = 186/360 (51%)

Query:     4 PNMMEFLESLGADMEISNMSFS-------------------KKNVLGPYFWQIIREIMKF 44
             PN++ F + LG + + S+MSF+                   K+N+L P F +  R I+KF
Sbjct:    66 PNLIAFFDELGVETQASDMSFAVSDPSGWEWASTLPGLFAQKRNLLNPDFHRFWRTILKF 125

Query:    45 KDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFS 104
              +         E +  +  + +LG ++    Y E F+K Y++P+  +IWS P   ++++ 
Sbjct:   126 NNTA-----RAELSAGLVTETSLGAWLDRHCYDEAFRKNYILPMGAAIWSTPEREMLNYP 180

Query:   105 AFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYD 164
             A S   F+ NH L+    RP+W TV   S SYV K     + L  ++++G  V  +  + 
Sbjct:   181 AQSFFQFFDNHRLMHK-ERPKWRTVTGGSQSYVKKAA---DGLDGRLRSGVRVERISPFG 236

Query:   165 EGRTEVRGD-GFQGFYDGCIMAVHAPDALRILGNQSTFEEKR-LLGAFQYVYSDIFLHRD 222
               RT V  D G    +D  I+A H+  AL ++  Q  +E++  LL + +Y  + I+LHRD
Sbjct:   237 S-RTSVHLDNGHTEIFDEVILAAHSNQALALV--QDRYEDQAFLLRSVRYRPNSIWLHRD 293

Query:   223 KNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNN--T 280
                MP+  +AW++WN L       CLTYW+N LQ I   ++  P  +TLNP   P    T
Sbjct:   294 PALMPKRKSAWASWNVLKQEGDDICLTYWMNRLQGI---DSSRPLFITLNPATPPKEEYT 350

Query:   281 LLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGK 340
              L ++  HP    AA  A   L+ IQGK  +WF  A+ G GFHEDGLK+G+ A   + GK
Sbjct:   351 FLHYTLDHPQFDTAAEAAVRGLNRIQGKDNLWFAGAWMGRGFHEDGLKSGLFAGLSLGGK 410

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LTD2 SPO1482 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 108/308 (35%), Positives = 163/308 (52%)

Query:    26 KKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYL 85
             K N+L P ++++I +I++F         E     D   D+T+G+ +   G    F+  YL
Sbjct:   116 KGNLLRPQYFKMIADILRFGKRA-----EAAARDD---DKTIGELVDELGLGSWFRNNYL 167

Query:    86 VPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLE 145
             +P+CG+IWS P   +  F A S++ F+RNH LL   G  QW TV+  S  YV ++ A L 
Sbjct:   168 MPMCGAIWSTPVAEVDRFPAKSLVQFFRNHALLAGSGEHQWWTVKGGSIEYVRRLEAALV 227

Query:   146 SLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKR 205
             + GC ++T   V  V + D G     GD  +  +D  I+A H+   L+ILG  +T  E  
Sbjct:   228 ARGCTLRTNMPVEQVQRDDFGVHIQTGDAQRATFDELILACHSDQTLKILGANATKAEAS 287

Query:   206 LLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGL 265
              LG+ +Y  +   LH D   MPR  A WS+W++    DG   +TYW+N LQ I + +   
Sbjct:   288 ALGSIRYQANKAVLHCDTGQMPRRRACWSSWSYRSQ-DGDIGVTYWMNKLQGIPESD--- 343

Query:   266 PFLVTLNPDHTPNNTLL--KWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFH 323
             P  VTLNP    ++  +  +    HPV   AA KA  ++  +QG+   WF  A+  +GFH
Sbjct:   344 PLFVTLNPSKPIHSEAVYDEVQFHHPVFDKAALKAQQDIRQMQGQNHTWFAGAWNRHGFH 403

Query:   324 EDGLKAGM 331
             EDG+ + M
Sbjct:   404 EDGIASAM 411

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1482 SPO_1482 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 108/308 (35%), Positives = 163/308 (52%)

Query:    26 KKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYL 85
             K N+L P ++++I +I++F         E     D   D+T+G+ +   G    F+  YL
Sbjct:   116 KGNLLRPQYFKMIADILRFGKRA-----EAAARDD---DKTIGELVDELGLGSWFRNNYL 167

Query:    86 VPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLE 145
             +P+CG+IWS P   +  F A S++ F+RNH LL   G  QW TV+  S  YV ++ A L 
Sbjct:   168 MPMCGAIWSTPVAEVDRFPAKSLVQFFRNHALLAGSGEHQWWTVKGGSIEYVRRLEAALV 227

Query:   146 SLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKR 205
             + GC ++T   V  V + D G     GD  +  +D  I+A H+   L+ILG  +T  E  
Sbjct:   228 ARGCTLRTNMPVEQVQRDDFGVHIQTGDAQRATFDELILACHSDQTLKILGANATKAEAS 287

Query:   206 LLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGL 265
              LG+ +Y  +   LH D   MPR  A WS+W++    DG   +TYW+N LQ I + +   
Sbjct:   288 ALGSIRYQANKAVLHCDTGQMPRRRACWSSWSYRSQ-DGDIGVTYWMNKLQGIPESD--- 343

Query:   266 PFLVTLNPDHTPNNTLL--KWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFH 323
             P  VTLNP    ++  +  +    HPV   AA KA  ++  +QG+   WF  A+  +GFH
Sbjct:   344 PLFVTLNPSKPIHSEAVYDEVQFHHPVFDKAALKAQQDIRQMQGQNHTWFAGAWNRHGFH 403

Query:   324 EDGLKAGM 331
             EDG+ + M
Sbjct:   404 EDGIASAM 411

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KSY6 VC_1120 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 108/323 (33%), Positives = 165/323 (51%)

Query:    19 ISNMSFSKKNVLGPYFWQIIREIMKFKD-DVLCYLEELENNPDIDRDETLGQFIKSRGYS 77
             ++ +   K+N L P F++ I EI++F      C   +L N      ++TLG F+    +S
Sbjct:   102 LTTLFAQKRNWLNPKFYRFIAEILRFNRLTKACVDNQLAN------EQTLGDFLAQHQFS 155

Query:    78 ELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYV 137
             E F + Y++P+  +IWS     + +F       F+ NH LL +  RPQW  +   S SY+
Sbjct:   156 EYFCENYILPMGAAIWSSSLADMRAFPLMFFARFFLNHGLLDVTNRPQWYVIPGGSRSYI 215

Query:   138 NKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGN 197
                  L +  G +I+    V  V +   G  EV  +G    +D  I A H+  AL +L +
Sbjct:   216 ---APLTQGFGDRIRLNSAVTQVKRLPSG-VEVVVNGRSERFDEVIFACHSDQALAMLSD 271

Query:   198 QSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKA-------CLTY 250
              S+ E++ LL A  Y  +++ LH D   +P+  AAW+AWN+   L G+A        LTY
Sbjct:   272 ASSTEQQ-LLSALAYQANEVVLHTDTRLLPKRKAAWAAWNYW--LKGEANQETRLPSLTY 328

Query:   251 WLNVLQNIGDGETGLPFLVTLNP--DHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGK 308
              +N+LQ+I   ET   F VTLN   D  P+  L +++  HPV S  A +A  +   I G 
Sbjct:   329 NMNILQHIEAPET---FCVTLNSSEDIDPSKILRRFTYHHPVFSRPAIEAQQKKAQISGV 385

Query:   309 RGIWFCEAYQGYGFHEDGLKAGM 331
                WFC AY   GFHEDG+++ +
Sbjct:   386 NHTWFCGAYWHNGFHEDGVRSAL 408

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_1120 VC_1120 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 108/323 (33%), Positives = 165/323 (51%)

Query:    19 ISNMSFSKKNVLGPYFWQIIREIMKFKD-DVLCYLEELENNPDIDRDETLGQFIKSRGYS 77
             ++ +   K+N L P F++ I EI++F      C   +L N      ++TLG F+    +S
Sbjct:   102 LTTLFAQKRNWLNPKFYRFIAEILRFNRLTKACVDNQLAN------EQTLGDFLAQHQFS 155

Query:    78 ELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYV 137
             E F + Y++P+  +IWS     + +F       F+ NH LL +  RPQW  +   S SY+
Sbjct:   156 EYFCENYILPMGAAIWSSSLADMRAFPLMFFARFFLNHGLLDVTNRPQWYVIPGGSRSYI 215

Query:   138 NKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGN 197
                  L +  G +I+    V  V +   G  EV  +G    +D  I A H+  AL +L +
Sbjct:   216 ---APLTQGFGDRIRLNSAVTQVKRLPSG-VEVVVNGRSERFDEVIFACHSDQALAMLSD 271

Query:   198 QSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKA-------CLTY 250
              S+ E++ LL A  Y  +++ LH D   +P+  AAW+AWN+   L G+A        LTY
Sbjct:   272 ASSTEQQ-LLSALAYQANEVVLHTDTRLLPKRKAAWAAWNYW--LKGEANQETRLPSLTY 328

Query:   251 WLNVLQNIGDGETGLPFLVTLNP--DHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGK 308
              +N+LQ+I   ET   F VTLN   D  P+  L +++  HPV S  A +A  +   I G 
Sbjct:   329 NMNILQHIEAPET---FCVTLNSSEDIDPSKILRRFTYHHPVFSRPAIEAQQKKAQISGV 385

Query:   309 RGIWFCEAYQGYGFHEDGLKAGM 331
                WFC AY   GFHEDG+++ +
Sbjct:   386 NHTWFCGAYWHNGFHEDGVRSAL 408

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_VIII000723	hypothetical protein (862 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.100440002	Predicted protein (291 aa)	•		•				•		0.754
	eugene3.00110420	hypothetical protein (305 aa)	•		•						0.464
	estExt_fgenesh4_pg.C_LG_XVIII0095	hypothetical protein (355 aa)	•		•					•	0.417

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	602
COG2907	447	COG2907, COG2907, Predicted NAD/FAD-binding protei	1e-66
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	1e-37
pfam02353	273	pfam02353, CMAS, Mycolic acid cyclopropane synthet	4e-34
PRK11705	383	PRK11705, PRK11705, cyclopropane fatty acyl phosph	2e-28
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	8e-06
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	1e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-04
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	4e-04

>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]

 Score =  223 bits (570), Expect = 1e-66
 Identities = 119/361 (32%), Positives = 179/361 (49%), Gaps = 39/361 (10%)

Query: 1   VTCPNMMEFLESLGADMEISNMSFS----------------------KKNVLGPYFWQII 38
            T PN+    +++G D + S MSFS                      K+N+L P F  ++
Sbjct: 70  RTYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCML 129

Query: 39  REIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSE 98
            EI++F        +   ++     D TL Q++K R +   F + +L P+  +IWS P  
Sbjct: 130 AEILRFY-----RSDLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLA 184

Query: 99  GIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVC 158
               + A + L F  NH LL L  RP W TV   S +YV ++ A    +  +I+T   VC
Sbjct: 185 DASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAA---DIRGRIETRTPVC 241

Query: 159 SVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIF 218
            + +  +G   V  DG    +D  ++A H   AL +L ++ + EE++LLGA +Y  +   
Sbjct: 242 RLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL-DEPSPEERQLLGALRYSANTAV 300

Query: 219 LHRDKNFMPRNPAAWSAWNFLG---GLDGKACLTYWLNVLQNIGDGETGLPFLVTLN--P 273
           LH D + MPR   AW++WN+LG       +  LTYW+N LQ +        + VTLN  P
Sbjct: 301 LHTDASLMPRRLRAWASWNYLGTVQWELCQGSLTYWMNRLQALISVR---DYFVTLNNRP 357

Query: 274 DHTPNNTLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIA 333
              P + + + +  HP+    A +A  EL  +QG R  WFC AY G GFHEDGL+AG+  
Sbjct: 358 WVDPAHVIAERTYPHPLFDPEAVRAQQELWALQGARRTWFCGAYFGRGFHEDGLQAGLAV 417

Query: 334 A 334
           A
Sbjct: 418 A 418

Length = 447

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score =  140 bits (356), Expect = 1e-37
 Identities = 55/119 (46%), Positives = 72/119 (60%)

Query: 481 FLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHS 540
            LR +  R+S  +A  NI  HYDLSN+ + LF+D SMTYSC  F+D D  L+ AQ  K  
Sbjct: 3   MLRRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLD 62

Query: 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           L +EK  +  G  +L+IGCGWG  AI    + G    G+TLS EQL YAE ++   GL+
Sbjct: 63  LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121

Length = 283

>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase

 Score =  130 bits (329), Expect = 4e-34
 Identities = 46/111 (41%), Positives = 62/111 (55%)

Query: 489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV 548
           +   +   NI  HYDLSN+ FALF+D +MTYSC  F+  D  L+ AQ  K  L ++K  +
Sbjct: 1   HKKRRDFENIQAHYDLSNDFFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGL 60

Query: 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
             G  +L+IGCGWG        +   N  G+TLS  Q K+A  +V   GLQ
Sbjct: 61  KPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVAAEGLQ 111

This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273

>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional

 Score =  116 bits (294), Expect = 2e-28
 Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 34/206 (16%)

Query: 402 LRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKV-- 459
           +++HNP+F+ +V+    LGL +SY+DG +   D +               LD   S+V  
Sbjct: 39  IQVHNPRFFKRVLQEGSLGLGESYMDGWW---DCD--------------RLDEFFSRVLR 81

Query: 460 ----NQKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDE 515
                +        L    I  A  F    S++ +    +     HYDL N+LF   +D 
Sbjct: 82  AGLDEKLPHHLKDTL---RILRARLFNLQ-SKKRAWIVGKE----HYDLGNDLFEAMLDP 133

Query: 516 SMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN 575
            M YSC  +KD D  L+ AQ  K  L   K ++  G  VL+IGCGWG  A       G +
Sbjct: 134 RMQYSCGYWKDAD-TLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVS 192

Query: 576 YTGITLSAEQLKYAEMKVNEAGLQVT 601
             G+T+SAEQ K A+ +   AGL V 
Sbjct: 193 VVGVTISAEQQKLAQERC--AGLPVE 216

Length = 383

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 554 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG 597
           VL++GCG G  A+ +    G   TG+ +S   L+ A        
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL 45

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 555 LEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594
           L++GCG G  A  + R+ G   TG+ LS E L  A  +  
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP 40

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 554 VLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAG 597
           VL+IGCG G+ AIE+ R   G   TG+ LS E L+ A      A 
Sbjct: 5   VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLAL 49

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 555 LEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVTN 602
           L+IGCG GT    ++    G  YTG+ +S   L+ A  ++   GL    
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAV 49

Members of this family are SAM dependent methyltransferases. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	602
COG2907	447	Predicted NAD/FAD-binding protein [General functio	100.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	100.0
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.96
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.95
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.88
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.87
PLN02576	496	protoporphyrinogen oxidase	99.85
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.83
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.81
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.8
PLN02487	569	zeta-carotene desaturase	99.78
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.76
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.75
PLN02612	567	phytoene desaturase	99.75
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.74
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.73
PRK07233	434	hypothetical protein; Provisional	99.73
PRK07208	479	hypothetical protein; Provisional	99.71
PLN02529	738	lysine-specific histone demethylase 1	99.62
PLN02268	435	probable polyamine oxidase	99.62
PLN02244	340	tocopherol O-methyltransferase	99.6
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.46
PLN03000	881	amine oxidase	99.46
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.45
PLN02568	539	polyamine oxidase	99.4
PLN02976	1713	amine oxidase	99.38
PLN02676	487	polyamine oxidase	99.36
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.35
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.23
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.13
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.97
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.96
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.89
PRK05785	226	hypothetical protein; Provisional	98.85
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.8
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.79
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.79
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.78
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.78
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.77
PRK11207	197	tellurite resistance protein TehB; Provisional	98.76
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.75
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.75
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.75
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.68
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.67
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.66
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.66
PRK07402	196	precorrin-6B methylase; Provisional	98.66
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.65
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.65
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.64
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.64
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.64
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.64
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.63
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.62
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.62
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.59
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.57
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.57
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.56
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.55
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.55
PRK12335	287	tellurite resistance protein TehB; Provisional	98.54
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.53
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.52
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.5
PLN02336	475	phosphoethanolamine N-methyltransferase	98.47
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.46
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.45
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.43
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.42
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.42
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.4
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.4
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.4
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.4
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.39
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.39
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.38
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.37
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.37
PRK14967	223	putative methyltransferase; Provisional	98.37
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.37
PLN02490	340	MPBQ/MSBQ methyltransferase	98.37
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.37
KOG1271	227	consensus Methyltransferases [General function pre	98.37
PRK14968	188	putative methyltransferase; Provisional	98.36
TIGR03438	301	probable methyltransferase. This model represents	98.35
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.34
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.33
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.32
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.32
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.32
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.31
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.31
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.28
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.27
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.27
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.27
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.25
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.25
PRK04266	226	fibrillarin; Provisional	98.24
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.24
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.23
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.23
COG4123	248	Predicted O-methyltransferase [General function pr	98.22
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.22
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.21
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.21
PRK08317	241	hypothetical protein; Provisional	98.21
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.2
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.2
COG2890	280	HemK Methylase of polypeptide chain release factor	98.2
PRK06202	232	hypothetical protein; Provisional	98.2
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.19
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.18
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.17
PRK04148	134	hypothetical protein; Provisional	98.17
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.16
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.16
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.16
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.15
PRK06922	677	hypothetical protein; Provisional	98.15
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.13
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.12
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.1
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.1
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.1
COG3349	485	Uncharacterized conserved protein [Function unknow	98.08
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.07
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.07
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.06
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.06
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.05
KOG2904	328	consensus Predicted methyltransferase [General fun	98.04
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.04
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.03
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.02
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.01
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.01
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.01
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.0
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.0
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	97.99
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.99
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.96
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.96
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.95
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.94
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.93
PHA03411	279	putative methyltransferase; Provisional	97.93
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.91
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.9
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.89
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.89
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.88
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.88
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.86
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.86
PLN02336	475	phosphoethanolamine N-methyltransferase	97.84
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.83
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.81
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.8
COG2081	408	Predicted flavoproteins [General function predicti	97.79
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.79
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.77
PLN03075	296	nicotianamine synthase; Provisional	97.76
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.75
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.74
PLN02672	1082	methionine S-methyltransferase	97.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.7
PTZ00146	293	fibrillarin; Provisional	97.69
PF13679	141	Methyltransf_32: Methyltransferase domain	97.65
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.64
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.64
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.64
TIGR00438	188	rrmJ cell division protein FtsJ.	97.63
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.62
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.6
PRK04457	262	spermidine synthase; Provisional	97.58
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.57
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.57
PLN02476	278	O-methyltransferase	97.56
PHA03412	241	putative methyltransferase; Provisional	97.54
COG4122	219	Predicted O-methyltransferase [General function pr	97.54
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.51
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.46
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.39
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.38
KOG4300	252	consensus Predicted methyltransferase [General fun	97.37
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.36
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.31
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.31
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.31
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.28
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.28
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.28
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.23
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.22
PRK00811	283	spermidine synthase; Provisional	97.2
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.18
KOG3010	261	consensus Methyltransferase [General function pred	97.16
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.12
PLN02366	308	spermidine synthase	97.1
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.04
KOG2899	288	consensus Predicted methyltransferase [General fun	97.02
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.99
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.99
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.91
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	96.9
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.88
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	96.84
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	96.8
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.8
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.79
PRK01581	374	speE spermidine synthase; Validated	96.74
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.71
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.69
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.64
PRK03612	521	spermidine synthase; Provisional	96.61
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.54
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.53
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.5
PRK10742	250	putative methyltransferase; Provisional	96.43
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.38
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.35
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.34
KOG2730	263	consensus Methylase [General function prediction o	96.33
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.27
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.26
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.26
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	96.25
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.23
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.21
COG2520	341	Predicted methyltransferase [General function pred	96.21
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.2
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.19
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.16
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	95.9
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.82
TIGR00275	400	flavoprotein, HI0933 family. The model when search	95.69
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.64
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	95.55
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	95.51
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.37
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.23
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	95.19
KOG3115	249	consensus Methyltransferase-like protein [General	95.14
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	94.86
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	94.83
PRK11524	284	putative methyltransferase; Provisional	94.7
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	94.65
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	94.57
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	94.53
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	94.53
PRK13699	227	putative methylase; Provisional	94.45
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	94.41
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	94.41
COG0579	429	Predicted dehydrogenase [General function predicti	94.26
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.07
KOG2361	264	consensus Predicted methyltransferase [General fun	94.03
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	94.0
PLN02823	336	spermine synthase	94.0
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	93.96
KOG2078	495	consensus tRNA modification enzyme [RNA processing	93.83
PHA01634	156	hypothetical protein	93.82
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	93.77
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	93.76
COG3897	218	Predicted methyltransferase [General function pred	93.73
COG2384	226	Predicted SAM-dependent methyltransferase [General	93.73
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	93.64
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	93.62
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.51
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	93.34
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.25
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	93.1
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.92
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	92.72
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	92.56
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	92.54
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	92.41
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	92.3
PRK11728	393	hydroxyglutarate oxidase; Provisional	92.2
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	92.15
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	92.13
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	92.06
COG2521	287	Predicted archaeal methyltransferase [General func	91.86
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	91.8
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	91.57
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	91.55
PTZ00383	497	malate:quinone oxidoreductase; Provisional	91.37
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	91.26
PRK06847	375	hypothetical protein; Provisional	91.21
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	91.03
PRK09897	534	hypothetical protein; Provisional	90.67
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	90.53
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	90.4
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	90.3
KOG2940	325	consensus Predicted methyltransferase [General fun	90.3
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	90.26
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	90.18
PRK06116	450	glutathione reductase; Validated	90.06
COG4076	252	Predicted RNA methylase [General function predicti	90.06
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	89.99
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	89.95
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	89.78
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	89.63
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	89.61
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	89.33
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	89.24
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	89.04
PLN02507	499	glutathione reductase	89.03
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	88.94
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	88.71
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	88.62
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	88.55
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	88.5
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	88.47
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	88.4
PRK13339	497	malate:quinone oxidoreductase; Reviewed	88.39
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	88.25
PRK05257	494	malate:quinone oxidoreductase; Validated	88.2
COG3129	292	Predicted SAM-dependent methyltransferase [General	88.13
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	88.01
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	87.81
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	87.79
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	87.76
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	87.6
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	87.4
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	87.36
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	87.33
PRK06834	488	hypothetical protein; Provisional	87.2
PRK00536	262	speE spermidine synthase; Provisional	86.96
PRK07845	466	flavoprotein disulfide reductase; Reviewed	86.94
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	86.75
PRK07236	386	hypothetical protein; Provisional	86.74
PRK07588	391	hypothetical protein; Provisional	86.6
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	86.47
COG1565	370	Uncharacterized conserved protein [Function unknow	86.46
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	86.29
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	86.27
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	85.99
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	85.87
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	85.86
KOG2920	282	consensus Predicted methyltransferase [General fun	85.83
COG0286	489	HsdM Type I restriction-modification system methyl	85.78
PRK07190	487	hypothetical protein; Provisional	85.72
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	85.68
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	85.55
PF02036	102	SCP2: SCP-2 sterol transfer family; InterPro: IPR0	85.25
PLN02740	381	Alcohol dehydrogenase-like	85.22
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	85.18
KOG1331	293	consensus Predicted methyltransferase [General fun	85.14
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	85.05
PRK08163	396	salicylate hydroxylase; Provisional	85.04
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	85.0
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	84.87
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	84.83
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	84.68
PRK06753	373	hypothetical protein; Provisional	84.59
PRK09126	392	hypothetical protein; Provisional	84.43
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	84.37
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	84.02
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	84.02
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	83.99
PRK10157	428	putative oxidoreductase FixC; Provisional	83.96
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	83.73
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	83.7
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	83.51
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	83.22
PRK14727	479	putative mercuric reductase; Provisional	83.21
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	83.2
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	83.17
PTZ00052	499	thioredoxin reductase; Provisional	82.9
PLN02463	447	lycopene beta cyclase	82.87
PRK14694	468	putative mercuric reductase; Provisional	82.82
PRK06184	502	hypothetical protein; Provisional	82.81
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	82.7
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	82.61
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	82.58
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	82.45
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	82.24
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	82.03
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	82.01
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	82.0
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	81.9
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	81.88
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	81.62
PRK08274	466	tricarballylate dehydrogenase; Validated	81.36
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	81.13
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	81.06
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	80.9
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	80.58
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	80.57
PRK06370	463	mercuric reductase; Validated	80.3
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	80.05

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=100.00  E-value=4.6e-55  Score=427.22  Aligned_cols=339  Identities=36%  Similarity=0.625  Sum_probs=308.1

Q ss_pred             CCcHHHHHHHHHcCCCceeeceeec----------------------CccccChHHHHHHHHHHHhhHHHHHHHHhhcCC
Q 036521            1 VTCPNMMEFLESLGADMEISNMSFS----------------------KKNVLGPYFWQIIREIMKFKDDVLCYLEELENN   58 (602)
Q Consensus         1 ~~y~~~~~l~~~lGi~~~~~~~~~~----------------------~~~~~~~~~~~~~~~i~rf~~~~~~~l~~~~~~   58 (602)
                      ++|||+++||+++|+++.++.|+|+                      +.|+++|.++.++.+++||.+....    +.+ 
T Consensus        70 ~tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~----~~d-  144 (447)
T COG2907          70 RTYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLA----PSD-  144 (447)
T ss_pred             CCcchHHHHHHHcCCCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhcc----chh-
Confidence            5899999999999999999999876                      5667789999999999999884111    100 


Q ss_pred             CCCCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHH
Q 036521           59 PDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVN  138 (602)
Q Consensus        59 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~  138 (602)
                      -....++|+++||++++|++.|++.++.||+.++|+++..++..+|+.+|+.|+.+||++.+.+.+.|.++.||+..+++
T Consensus       145 ~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq  224 (447)
T COG2907         145 NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQ  224 (447)
T ss_pred             hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHH
Confidence            01235799999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             HHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeEE
Q 036521          139 KVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIF  218 (602)
Q Consensus       139 ~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~v  218 (602)
                      +|++.+   +++|.++++|..|.+-.+||.|+..+|++..||+||+||+|++|+.||++ ++|+|+++|+.|.|+.+.+|
T Consensus       225 ~laa~~---~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~e-~sp~e~qll~a~~Ys~n~aV  300 (447)
T COG2907         225 RLAADI---RGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLDE-PSPEERQLLGALRYSANTAV  300 (447)
T ss_pred             HHhccc---cceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcCC-CCHHHHHHHHhhhhhhceeE
Confidence            999999   78999999999999999999999999988899999999999999999997 99999999999999999999


Q ss_pred             EecCCCCCCCCCCcccccccccC---CCCCeEEEEeccccccCCCCCCCCCeEEEcC--CCCCCcceEEEEEccCCCCCh
Q 036521          219 LHRDKNFMPRNPAAWSAWNFLGG---LDGKACLTYWLNVLQNIGDGETGLPFLVTLN--PDHTPNNTLLKWSTGHPVPSV  293 (602)
Q Consensus       219 l~~d~~l~p~~~~~w~s~n~~~~---~~~~~~~t~~~~~~~~l~~~~~~~~v~~tl~--p~~~p~~~l~r~~~~~p~~~~  293 (602)
                      +|+|+++||.+..+|++|||...   ...+.+++||||.+|++..  . .+.++|+|  |..+|..++++..|+||+|++
T Consensus       301 lhtd~~lmPrR~~Awaswny~~~~~~e~~~~~lty~mN~lq~l~~--~-~~~~vtln~~~~~dpa~v~~~~ty~HPlf~~  377 (447)
T COG2907         301 LHTDASLMPRRLRAWASWNYLGTVQWELCQGSLTYWMNRLQALIS--V-RDYFVTLNNRPWVDPAHVIAERTYPHPLFDP  377 (447)
T ss_pred             EeecccccccccccccccceeccccccccCcceeccHHHhhcccC--C-cceEEEecCCcccChHHhhHHhhcCCcCCCH
Confidence            99999999999999999999874   3457799999999999987  4 78899999  777788889999999999999


Q ss_pred             hHHHHHHHHHhhcCCCCeEEeccccCCCCChhHHHHHHHHHHHhcCCcccccCCCCCCC
Q 036521          294 AASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMV  352 (602)
Q Consensus       294 ~~~~~~~~l~~lqg~~gl~~aG~~~g~g~~E~av~SG~~aA~~ll~~~~~~~~~~~~~~  352 (602)
                      ...++|+++.++||.+++||||+|+|.|||||+++||+.+|+++ |+.|+.....++++
T Consensus       378 ~avraqq~l~alqg~~~twfcgAy~g~GFHeDg~~aGl~va~~l-g~~w~~a~~sg~~~  435 (447)
T COG2907         378 EAVRAQQELWALQGARRTWFCGAYFGRGFHEDGLQAGLAVAEDL-GAPWEAAVPSGRAV  435 (447)
T ss_pred             HHHHHHHHHHhhhcCCCCCcchhhhccccchhhhhhHHHHHHhc-CCcccccCccchhh
Confidence            99999999999999999999999999999999999999999998 78777554444443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=100.00  E-value=3.5e-33  Score=293.89  Aligned_cols=176  Identities=31%  Similarity=0.495  Sum_probs=151.7

Q ss_pred             CcEEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCChHhHHHHHHHHHHhcccccchhhcccccCCCcchhhhhhhhh
Q 036521          398 LRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIAS  477 (602)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (602)
                      ++++|+|+|++++.+++.+|+||||||||+|+|++++    |.+++..++.|.....           ..+.     ...
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~~~----l~~~~~~~~~~~~~~~-----------~~~~-----~~~   94 (383)
T PRK11705         35 RPWDIQVHNPRFFKRVLQEGSLGLGESYMDGWWDCDR----LDEFFSRVLRAGLDEK-----------LPHH-----LKD   94 (383)
T ss_pred             CCeEEEECCHHHHHHHhccCCccHHHHHHcCCeecCC----HHHHHHHHHHccchhh-----------hhhh-----HHH
Confidence            5789999999999999999999999999999999986    9999988887741100           0000     000


Q ss_pred             HHHHH-HhhhccCchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEE
Q 036521          478 ASYFL-RHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLE  556 (602)
Q Consensus       478 ~~~~~-~~~~~~~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLD  556 (602)
                      ....+ .++.+.|++++++++|++|||++|+||+.|+|++|+|||+||++ .++|++||.++++.+++++++++|++|||
T Consensus        95 ~~~~~~~~~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLD  173 (383)
T PRK11705         95 TLRILRARLFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLD  173 (383)
T ss_pred             HHHHHHHHHhccCChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            11122 22466899999999999999999999999999999999999964 57999999999999999999999999999


Q ss_pred             EecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          557 IGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       557 iGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ||||||.++.++++++|++|+|+|+|++|++.|+++++
T Consensus       174 IGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~  211 (383)
T PRK11705        174 IGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA  211 (383)
T ss_pred             eCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            99999999999998789999999999999999999885

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=3.2e-30  Score=253.83  Aligned_cols=118  Identities=45%  Similarity=0.748  Sum_probs=112.9

Q ss_pred             hhhccCchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchH
Q 036521          484 HISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGT  563 (602)
Q Consensus       484 ~~~~~~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~  563 (602)
                      ++.+++++++++++|++|||++|+||++|+|++|+|||+||++++.+|++||.+|++.++++++++||++|||||||||+
T Consensus         6 ~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~   85 (283)
T COG2230           6 RLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG   85 (283)
T ss_pred             cccccccccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhH
Confidence            34566888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          564 FAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       564 ~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +++++|+++|++|+|||+|++|.+.+++++++.|++++
T Consensus        86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~  123 (283)
T COG2230          86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDN  123 (283)
T ss_pred             HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999999843

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.95  E-value=6e-29  Score=249.44  Aligned_cols=112  Identities=49%  Similarity=0.835  Sum_probs=88.0

Q ss_pred             chHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHH
Q 036521          490 SLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVV  569 (602)
Q Consensus       490 ~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la  569 (602)
                      ++++++++|++|||++|+||++|+|++|+|||+||++++++|++||.+|++.+++++++++|++|||||||||++++++|
T Consensus         2 ~~~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a   81 (273)
T PF02353_consen    2 SKKQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAA   81 (273)
T ss_dssp             -S---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHH
T ss_pred             ccchHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          570 RQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       570 ~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +++||+|+|||+|++|+++|+++++++|++++
T Consensus        82 ~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~  113 (273)
T PF02353_consen   82 ERYGCHVTGITLSEEQAEYARERIREAGLEDR  113 (273)
T ss_dssp             HHH--EEEEEES-HHHHHHHHHHHHCSTSSST
T ss_pred             HHcCcEEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999864

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.88  E-value=5.5e-21  Score=208.95  Aligned_cols=273  Identities=14%  Similarity=0.141  Sum_probs=184.9

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHH-hhhHHHHHHHHHhcCc-----cc--------------cCC
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIM-SFSAFSILSFYRNHHL-----LQ--------------LFG  122 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~-~~p~~~~l~~~~~~g~-----~~--------------~~~  122 (602)
                      .++|+++|++++ +++++.++++.|++.++|++++++++ ...+..+......++.     ..              ...
T Consensus       135 ~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  213 (462)
T TIGR00562       135 KDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQ  213 (462)
T ss_pred             CCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccccccccc
Confidence            469999999985 89999999999999999999988762 2111112111111110     00              011


Q ss_pred             CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHH
Q 036521          123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFE  202 (602)
Q Consensus       123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~  202 (602)
                      +..+..+.||+++|+++|++.|.  .++|+++++|++|.+++++|.|++.+|+++.||+||+|+|++++..++++ ..+.
T Consensus       214 ~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~-~~~~  290 (462)
T TIGR00562       214 GQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSE-LSNS  290 (462)
T ss_pred             CCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHHhcc-cCHH
Confidence            22378899999999999999994  26899999999999998999998888878999999999999999999985 7777


Q ss_pred             HHhhccCccccceeEEE-ecCCCCC-----------CCCC----C--ccccccccc-CCCCCeEEEEecccc-----ccC
Q 036521          203 EKRLLGAFQYVYSDIFL-HRDKNFM-----------PRNP----A--AWSAWNFLG-GLDGKACLTYWLNVL-----QNI  258 (602)
Q Consensus       203 ~~~~l~~~~y~~~~~vl-~~d~~l~-----------p~~~----~--~w~s~n~~~-~~~~~~~~t~~~~~~-----~~l  258 (602)
                      ..+.+.+++|.++.++. .++...+           |...    .  .|.+..+.. .+++...++.+++..     ...
T Consensus       291 ~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~  370 (462)
T TIGR00562       291 ASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDL  370 (462)
T ss_pred             HHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCC
Confidence            88899999999987553 4443211           2111    0  122222221 123344555555321     111


Q ss_pred             CCCCCCCCeEE---EcCCCC-CCcc-eEEEEEccCCCCChhHHHHHHHHHh-hc-CCCCeEEeccccCCCCChhHHHHHH
Q 036521          259 GDGETGLPFLV---TLNPDH-TPNN-TLLKWSTGHPVPSVAASKASLELDH-IQ-GKRGIWFCEAYQGYGFHEDGLKAGM  331 (602)
Q Consensus       259 ~~~~~~~~v~~---tl~p~~-~p~~-~l~r~~~~~p~~~~~~~~~~~~l~~-lq-g~~gl~~aG~~~g~g~~E~av~SG~  331 (602)
                      ++++..+.+..   .+.+.. .|.. .+++|+++.|+|++++...+.++.. ++ ..+++++||+|+....+|+|+.||.
T Consensus       371 ~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~  450 (462)
T TIGR00562       371 SENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGK  450 (462)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHH
Confidence            11111011111   111111 2333 5789999999999998887777654 33 3689999999995444899999999


Q ss_pred             HHHHHhcC
Q 036521          332 IAAHGVLG  339 (602)
Q Consensus       332 ~aA~~ll~  339 (602)
                      ++|++++.
T Consensus       451 ~~a~~~~~  458 (462)
T TIGR00562       451 AAASDVLT  458 (462)
T ss_pred             HHHHHHHH
Confidence            99999854

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.87  E-value=1.1e-20  Score=206.73  Aligned_cols=272  Identities=14%  Similarity=0.148  Sum_probs=186.9

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHH-hhhHHHHHHHHHhcCcc-----------ccCCCCcEEEe
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIM-SFSAFSILSFYRNHHLL-----------QLFGRPQWLTV  129 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~-~~p~~~~l~~~~~~g~~-----------~~~~~~~~~~~  129 (602)
                      .+++|+++|+++ .+++++.++++.|++.++|++++++++ ...+..++++.+.++.+           ...+..+++.+
T Consensus       143 ~~~~sv~~~l~~-~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  221 (463)
T PRK12416        143 TKDTSLALFLES-FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSF  221 (463)
T ss_pred             CCCCCHHHHHHH-hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEee
Confidence            468999999998 489999999999999999999998873 23334455555544411           01223467889


Q ss_pred             cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccC
Q 036521          130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGA  209 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~  209 (602)
                      +||+++|+++|++.|.+  .+|+++++|++|++++++|.|++.+|+++.||+||+|+|++++..|+..   +.....+.+
T Consensus       222 ~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~---~~l~~~~~~  296 (463)
T PRK12416        222 KGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQS---NELNEQFHT  296 (463)
T ss_pred             CCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcCC---cchhHHHhc
Confidence            99999999999999952  5799999999999999999998888877899999999999999999974   234455778


Q ss_pred             ccccceeEE-EecCCCC--CC---------CCC------Cccccccccc-CCCCCeEEEEecc---c----cccCCCCCC
Q 036521          210 FQYVYSDIF-LHRDKNF--MP---------RNP------AAWSAWNFLG-GLDGKACLTYWLN---V----LQNIGDGET  263 (602)
Q Consensus       210 ~~y~~~~~v-l~~d~~l--~p---------~~~------~~w~s~n~~~-~~~~~~~~t~~~~---~----~~~l~~~~~  263 (602)
                      +.|.++.++ +.++...  .|         ...      ..|.+..|.. .++....+++.++   .    +..+++++.
T Consensus       297 ~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~  376 (463)
T PRK12416        297 FKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEEL  376 (463)
T ss_pred             CCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHH
Confidence            888777544 4555321  12         111      1333333333 2333444444432   1    112222111


Q ss_pred             C----CCeEEEcCCCCCCcc-eEEEEEccCCCCChhHHHHHHHHHh-hc-CCCCeEEeccccCCCCChhHHHHHHHHHHH
Q 036521          264 G----LPFLVTLNPDHTPNN-TLLKWSTGHPVPSVAASKASLELDH-IQ-GKRGIWFCEAYQGYGFHEDGLKAGMIAAHG  336 (602)
Q Consensus       264 ~----~~v~~tl~p~~~p~~-~l~r~~~~~p~~~~~~~~~~~~l~~-lq-g~~gl~~aG~~~g~g~~E~av~SG~~aA~~  336 (602)
                      .    +++...++....|.. .+++|+++.|+|..++...++.+.. ++ ..+++++||+|+....+|+|++||.++|++
T Consensus       377 ~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~  456 (463)
T PRK12416        377 VRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANE  456 (463)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHHHHHH
Confidence            0    111111222222332 4789999999999998888777764 43 368999999998544489999999999999


Q ss_pred             hcC
Q 036521          337 VLG  339 (602)
Q Consensus       337 ll~  339 (602)
                      |+.
T Consensus       457 i~~  459 (463)
T PRK12416        457 IIA  459 (463)
T ss_pred             HHH
Confidence            964

>PLN02576 protoporphyrinogen oxidase

Probab=99.85  E-value=3.3e-20  Score=204.63  Aligned_cols=274  Identities=14%  Similarity=0.147  Sum_probs=184.3

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhh-HHHHHHHHHhcCc-----------------------
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFS-AFSILSFYRNHHL-----------------------  117 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p-~~~~l~~~~~~g~-----------------------  117 (602)
                      .+++|+++|++++ +++++.++++.|++.++|++++++++... +..+..+.+.+|.                       
T Consensus       143 ~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~  221 (496)
T PLN02576        143 GREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDP  221 (496)
T ss_pred             CCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccccc
Confidence            4689999999985 89999999999999999999998873221 1122222221211                       


Q ss_pred             -cccCCCCcEEEecCCcHhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCe-EEEEe--CCCc-EEecCEEEEecChHHH
Q 036521          118 -LQLFGRPQWLTVRSRSHSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEG-RTEVR--GDGF-QGFYDGCIMAVHAPDA  191 (602)
Q Consensus       118 -~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~g-v~v~~--~~g~-~~~ad~VI~A~p~~~a  191 (602)
                       +....+...+.++||+++|+++|++.+   + ++|++|++|++|++.+++ |.|+.  .+|+ ++.||+||+|+|++++
T Consensus       222 ~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l  298 (496)
T PLN02576        222 RLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVV  298 (496)
T ss_pred             ccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHH
Confidence             000123457889999999999999999   5 689999999999998887 76654  3453 6899999999999999


Q ss_pred             HhhccCCCCHHHHhhccCccccceeEE-EecCCCCCCC------CC-----------------Cccccccccc-CCCCCe
Q 036521          192 LRILGNQSTFEEKRLLGAFQYVYSDIF-LHRDKNFMPR------NP-----------------AAWSAWNFLG-GLDGKA  246 (602)
Q Consensus       192 ~~ll~~~~~~~~~~~l~~~~y~~~~~v-l~~d~~l~p~------~~-----------------~~w~s~n~~~-~~~~~~  246 (602)
                      ..++.+ ..++..+.+.+++|.++.++ ++++...++.      ..                 ..|.+..+.. .+++..
T Consensus       299 ~~ll~~-~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~  377 (496)
T PLN02576        299 SEMLRP-KSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRV  377 (496)
T ss_pred             HHHhcc-cCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCE
Confidence            999985 77888999999999998754 4544432211      00                 0122222222 133344


Q ss_pred             EEEEeccc-----cccCCCCCCCCCeEE----EcCCCC--CCcc-eEEEEEccCCCCChhHHHHHHHHHh-hcCC--CCe
Q 036521          247 CLTYWLNV-----LQNIGDGETGLPFLV----TLNPDH--TPNN-TLLKWSTGHPVPSVAASKASLELDH-IQGK--RGI  311 (602)
Q Consensus       247 ~~t~~~~~-----~~~l~~~~~~~~v~~----tl~p~~--~p~~-~l~r~~~~~p~~~~~~~~~~~~l~~-lqg~--~gl  311 (602)
                      .++.+++.     ...+++++..+.+.+    .+....  .|.. .+++|+++.|+|++++......+.. ++..  +++
T Consensus       378 ~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l  457 (496)
T PLN02576        378 LLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGL  457 (496)
T ss_pred             EEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCE
Confidence            45544432     111222111011111    122111  2333 3679999999999998777666655 4444  799


Q ss_pred             EEeccccCCCCChhHHHHHHHHHHHhcCC
Q 036521          312 WFCEAYQGYGFHEDGLKAGMIAAHGVLGK  340 (602)
Q Consensus       312 ~~aG~~~g~g~~E~av~SG~~aA~~ll~~  340 (602)
                      ++||+|+....+|+|+.||.++|++|+..
T Consensus       458 ~~aG~~~~g~~i~~ai~sg~~aA~~i~~~  486 (496)
T PLN02576        458 FLGGNYRGGVALGKCVESGYEAADLVISY  486 (496)
T ss_pred             EEeccccCCccHHHHHHHHHHHHHHHHHH
Confidence            99999996555899999999999999653

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.83  E-value=2.9e-19  Score=188.93  Aligned_cols=269  Identities=20%  Similarity=0.265  Sum_probs=188.5

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhh-hHHHHHHHHHhcCcc-c-c---------CCCCcEEEe
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSF-SAFSILSFYRNHHLL-Q-L---------FGRPQWLTV  129 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~-p~~~~l~~~~~~g~~-~-~---------~~~~~~~~~  129 (602)
                      .+++|+++|+++ ++++++.++++.|++.++|++++++++.. ....+.+..+.++.+ . .         .....+.++
T Consensus       132 ~~d~sv~~f~r~-~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~  210 (444)
T COG1232         132 KQDISVGEFIRR-RFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL  210 (444)
T ss_pred             CCCcCHHHHHHH-HHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence            478999999999 59999999999999999999999887322 222344444444422 0 0         112468899


Q ss_pred             cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccC
Q 036521          130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGA  209 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~  209 (602)
                      +||+++++++|++.+   ..+|+++++|+.|.++..++.+++.+|+.+.||+||+|+|++.+.+++++   ......+..
T Consensus       211 ~gG~~~l~~al~~~l---~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~---~~~~~~~~~  284 (444)
T COG1232         211 RGGLQSLIEALAEKL---EAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD---EAVSKAAKE  284 (444)
T ss_pred             CccHHHHHHHHHHHh---hhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC---cchhhhhhh
Confidence            999999999999999   45699999999999998888888888888999999999999999999994   455667788


Q ss_pred             ccccceeEE-EecCCC---CCCC--------C-----CCcccccccccC-CCCCeEEEEecccc--c---cCCCCCCCCC
Q 036521          210 FQYVYSDIF-LHRDKN---FMPR--------N-----PAAWSAWNFLGG-LDGKACLTYWLNVL--Q---NIGDGETGLP  266 (602)
Q Consensus       210 ~~y~~~~~v-l~~d~~---l~p~--------~-----~~~w~s~n~~~~-~~~~~~~t~~~~~~--~---~l~~~~~~~~  266 (602)
                      +.|....+| +..+..   ..|.        .     ...|.|..++.. +.+...++..+...  +   .+.++|....
T Consensus       285 ~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~  364 (444)
T COG1232         285 LQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAA  364 (444)
T ss_pred             ccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHH
Confidence            888665444 334332   1221        1     125555444442 33555555443211  1   1111111000


Q ss_pred             eE---EEcCCC-CCCc-ceEEEEEccCCCCChhHHHHHHHHHh-hc-CCCCeEEeccccC-CCCChhHHHHHHHHHHHhc
Q 036521          267 FL---VTLNPD-HTPN-NTLLKWSTGHPVPSVAASKASLELDH-IQ-GKRGIWFCEAYQG-YGFHEDGLKAGMIAAHGVL  338 (602)
Q Consensus       267 v~---~tl~p~-~~p~-~~l~r~~~~~p~~~~~~~~~~~~l~~-lq-g~~gl~~aG~~~g-~g~~E~av~SG~~aA~~ll  338 (602)
                      +.   ..+.+. ..|. ..+.||.++.|+|.+++.+.+..+.. ++ -++|+..+|.|.. +| +.||+.+|..+|++|+
T Consensus       365 ~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g-~~d~I~~g~~aa~~l~  443 (444)
T COG1232         365 VLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVG-LPDCIAAGKEAAEQLL  443 (444)
T ss_pred             HHHHHHHHcCcCcchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCC-chHHHHHHHHHHHHhh
Confidence            11   111221 2232 24789999999999999999888876 54 4699999999984 46 6899999999999884

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.81  E-value=1.3e-17  Score=181.80  Aligned_cols=271  Identities=15%  Similarity=0.172  Sum_probs=178.3

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHh-hhHHHHHHHHHhcCcc---------cc--CCCCcEEEe
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMS-FSAFSILSFYRNHHLL---------QL--FGRPQWLTV  129 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~-~p~~~~l~~~~~~g~~---------~~--~~~~~~~~~  129 (602)
                      .+++|+++|+++ .+++.+.+.++.|++.++|++++++++. .....+..+...++.+         ..  ..++.++.+
T Consensus       138 ~~~~s~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (451)
T PRK11883        138 GQDQSVGAFFRR-RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTL  216 (451)
T ss_pred             CCCcCHHHHHHH-hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEee
Confidence            468999999998 5899999999999999999999887632 2222233333322210         00  124578899


Q ss_pred             cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccC
Q 036521          130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGA  209 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~  209 (602)
                      ++|+++++++|++.++.+  +|+++++|++|+.++++|.|++.+|+++.||+||+|+|++++.+++.+   +...+.+.+
T Consensus       217 ~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~---~~~~~~~~~  291 (451)
T PRK11883        217 KGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVA---PPAFALFKT  291 (451)
T ss_pred             ccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhccC---hhHHHHHhC
Confidence            999999999999999421  899999999999988899888888888999999999999999999773   334667788


Q ss_pred             ccccceeEE-EecCCCC--CCCC--------C------Cccccccccc-CCCCCeEEEEecccc-----ccCCCCCCCCC
Q 036521          210 FQYVYSDIF-LHRDKNF--MPRN--------P------AAWSAWNFLG-GLDGKACLTYWLNVL-----QNIGDGETGLP  266 (602)
Q Consensus       210 ~~y~~~~~v-l~~d~~l--~p~~--------~------~~w~s~n~~~-~~~~~~~~t~~~~~~-----~~l~~~~~~~~  266 (602)
                      ++|.++.++ +.++..+  .|..        .      ..|.+..+.. .+.+...+....+..     ...++++..+.
T Consensus       292 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (451)
T PRK11883        292 IPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAF  371 (451)
T ss_pred             CCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHH
Confidence            888887543 4455442  1110        0      0121111111 122333333322211     11111101011


Q ss_pred             eEEE----cCCCCCCc-ceEEEEEccCCCCChhHHHHHHHHHh-hcCCCCeEEeccccCCCCChhHHHHHHHHHHHhc
Q 036521          267 FLVT----LNPDHTPN-NTLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVL  338 (602)
Q Consensus       267 v~~t----l~p~~~p~-~~l~r~~~~~p~~~~~~~~~~~~l~~-lqg~~gl~~aG~~~g~g~~E~av~SG~~aA~~ll  338 (602)
                      +...    ++....+. ..+.+|+++.|.+.+++......+.. +...+++++||+|+..+-+|+|+.||+.+|++|+
T Consensus       372 ~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~sg~~~a~~i~  449 (451)
T PRK11883        372 VLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIAQAKRAAARLL  449 (451)
T ss_pred             HHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHHHHHHHHHHHH
Confidence            1111    12111222 24779999999998887666555544 3335799999999964448999999999999985

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.80  E-value=1.4e-17  Score=179.39  Aligned_cols=268  Identities=19%  Similarity=0.180  Sum_probs=169.0

Q ss_pred             CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHH-HH
Q 036521           61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYV-NK  139 (602)
Q Consensus        61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~-~~  139 (602)
                      ..+++|+++|++++++++++.+.++.|++.++|+++++++   |+.+++..+... +........+..++||+++++ ++
T Consensus       127 ~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---s~~~~~~~~~~~-~~~~~~~~~~~~~~gG~~~~~~~~  202 (419)
T TIGR03467       127 ALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERA---SAALAAKVLRDS-FLAGRAASDLLLPRVPLSELFPEP  202 (419)
T ss_pred             ccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHH-HhcCCCcceeeeeCCCHHHHHHHH
Confidence            3478999999999888999999999999999999988886   344444444321 111112234566788887776 45


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEecCCeEEEEe-CCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeE-
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQYDEGRTEVR-GDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI-  217 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~-~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~-  217 (602)
                      |++.|.++|++|+++++|++|..++++|.++. .+|+++.||+||+|+|++++.+|++.   +...+.+.+++|.++.+ 
T Consensus       203 l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~---~~~~~~l~~~~~~~~~~v  279 (419)
T TIGR03467       203 ARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG---EDLGALLTALGYSPITTV  279 (419)
T ss_pred             HHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC---chHHHHHhhcCCcceEEE
Confidence            88888778999999999999999888876543 35667899999999999999999874   24566788999988764 


Q ss_pred             EEecCCCC-CCCC-------CCcccccccccCCCCCeEEEEeccc---cccCCCCCCCCCeEEE---cCCCC-CCcc---
Q 036521          218 FLHRDKNF-MPRN-------PAAWSAWNFLGGLDGKACLTYWLNV---LQNIGDGETGLPFLVT---LNPDH-TPNN---  279 (602)
Q Consensus       218 vl~~d~~l-~p~~-------~~~w~s~n~~~~~~~~~~~t~~~~~---~~~l~~~~~~~~v~~t---l~p~~-~p~~---  279 (602)
                      .++++..+ .|..       ...|... +...+.....+.+.+..   ....++++..+.+...   +.|.. .+.+   
T Consensus       280 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~  358 (419)
T TIGR03467       280 HLRLDRAVRLPAPMVGLVGGLAQWLFD-RGQLAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWA  358 (419)
T ss_pred             EEEeCCCcCCCCCeeeecCCceeEEEE-CCcCCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccce
Confidence            45677665 2322       1122111 11111111233333221   1112221111111111   11211 1111   


Q ss_pred             eEEEEEccCCCCChhHHHHHHHHHhhcCCCCeEEeccccCCC---CChhHHHHHHHHHHHhc
Q 036521          280 TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYG---FHEDGLKAGMIAAHGVL  338 (602)
Q Consensus       280 ~l~r~~~~~p~~~~~~~~~~~~l~~lqg~~gl~~aG~~~g~g---~~E~av~SG~~aA~~ll  338 (602)
                      .+.+|....+.+.++....  +....+..++++|||||+..+   .+|+|+.||.+||++|+
T Consensus       359 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~  418 (419)
T TIGR03467       359 RVIKEKRATFAATPGLNRL--RPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL  418 (419)
T ss_pred             EEEEccCCccccCCccccc--CCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence            2456655555554443211  111124568999999998544   69999999999999885

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02487 zeta-carotene desaturase

Probab=99.78  E-value=8.2e-18  Score=185.19  Aligned_cols=273  Identities=12%  Similarity=0.056  Sum_probs=173.9

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHh-HHHHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHS-YVNKV  140 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~-l~~~l  140 (602)
                      .+++|+++|+++++.++++.+++|+|++.+++++++++++...+..++.++...     .......-++||+.+ +++++
T Consensus       227 ~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~-----~~~~~l~~~~Gg~~~~l~~pl  301 (569)
T PLN02487        227 LDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATK-----TEASLLRMLKGSPDVRLSGPI  301 (569)
T ss_pred             ccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhc-----CCcceeeecCCCchHHHHHHH
Confidence            467999999999988888999999999999999999998545454455443211     222345566899995 99999


Q ss_pred             HHHHhcCCCeEEeCCceeEEEecC--Ce----EEEEe---CCCcEEecCEEEEecChHHHHhhccCCCCH--HHHhhccC
Q 036521          141 IALLESLGCQIKTGCEVCSVLQYD--EG----RTEVR---GDGFQGFYDGCIMAVHAPDALRILGNQSTF--EEKRLLGA  209 (602)
Q Consensus       141 a~~l~~~g~~v~l~t~V~~i~~~~--~g----v~v~~---~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~--~~~~~l~~  209 (602)
                      ++.|+++|++|+++++|++|..+.  +|    +.|+.   .+++.+.+|.||+|+|++.+.+|+++ ..+  .+...+..
T Consensus       302 ~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~-~~~~~~~~~~l~~  380 (569)
T PLN02487        302 AKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPE-QWREYEFFDNIYK  380 (569)
T ss_pred             HHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCc-hhhccHHHhHHhc
Confidence            999999999999999999999863  33    23444   23446789999999999999999985 322  23455666


Q ss_pred             ccccceeEE-EecCCCCCCCC--------------CC----ccccccc--c---cC------CCCCeEEEEec---cccc
Q 036521          210 FQYVYSDIF-LHRDKNFMPRN--------------PA----AWSAWNF--L---GG------LDGKACLTYWL---NVLQ  256 (602)
Q Consensus       210 ~~y~~~~~v-l~~d~~l~p~~--------------~~----~w~s~n~--~---~~------~~~~~~~t~~~---~~~~  256 (602)
                      +.+.++.++ +++|..+....              ..    ..+.|.|  .   ..      +.....+.+.+   +.+.
T Consensus       381 L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~  460 (569)
T PLN02487        381 LVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYM  460 (569)
T ss_pred             CCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCcccc
Confidence            777777544 56675442111              01    0112222  0   00      00011222222   2244


Q ss_pred             cCCCCCCCCCeE---EEcCCCCCCcce--EEEEEccCCCCChhHHHHHHHHHhhcCCCCeEEeccccCCCC---ChhHHH
Q 036521          257 NIGDGETGLPFL---VTLNPDHTPNNT--LLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGF---HEDGLK  328 (602)
Q Consensus       257 ~l~~~~~~~~v~---~tl~p~~~p~~~--l~r~~~~~p~~~~~~~~~~~~l~~lqg~~gl~~aG~~~g~g~---~E~av~  328 (602)
                      .+++++..+.+.   ..++|......+  ..+.++..++|...+.....++.+....+|+|+||||+..++   +|+||+
T Consensus       461 ~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~  540 (569)
T PLN02487        461 PLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATL  540 (569)
T ss_pred             CCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHH
Confidence            444422211111   123444322222  335567777776655333333333445789999999985554   999999


Q ss_pred             HHHHHHHHhcCC
Q 036521          329 AGMIAAHGVLGK  340 (602)
Q Consensus       329 SG~~aA~~ll~~  340 (602)
                      ||.+||+.|+..
T Consensus       541 SG~~AA~~i~~~  552 (569)
T PLN02487        541 SGRQAAAYICEA  552 (569)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.76  E-value=6.9e-17  Score=176.15  Aligned_cols=269  Identities=13%  Similarity=0.120  Sum_probs=158.5

Q ss_pred             CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCC-cHhHHHH
Q 036521           61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSR-SHSYVNK  139 (602)
Q Consensus        61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG-~~~l~~~  139 (602)
                      ..+++|+.+|++++++++.+.+.++.|++.++++.+++++   ++.+++.++..  .+....+.......|+ ++.+.++
T Consensus       144 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~---S~~~~~~~l~~--~~~~~~g~~~~~~~g~~~~~l~~~  218 (453)
T TIGR02731       144 EQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDEL---SMTVVLTALNR--FLQERHGSKMAFLDGAPPERLCQP  218 (453)
T ss_pred             hhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHH--HHhcCCCCeeEeecCCChHHHHHH
Confidence            3578999999999999999999999999999999988875   34443333321  0000111111122232 5778999


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEecCCe-E-EEEeCCCc-----EEecCEEEEecChHHHHhhccCCCC-HHHHhhccCcc
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQYDEG-R-TEVRGDGF-----QGFYDGCIMAVHAPDALRILGNQST-FEEKRLLGAFQ  211 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~~~g-v-~v~~~~g~-----~~~ad~VI~A~p~~~a~~ll~~~~~-~~~~~~l~~~~  211 (602)
                      |++.|.++|++|+++++|++|.+++++ + .|++.+|+     ++.+|+||+|+|++.+.++|+.... ....+.+.+++
T Consensus       219 l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~  298 (453)
T TIGR02731       219 IVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLE  298 (453)
T ss_pred             HHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCC
Confidence            999998889999999999999876555 3 34444443     6889999999999999999874221 34556677777


Q ss_pred             cccee-EEEecCCCCCCCC-------CC-----cccccccccCCCCCeEEEEeccc---cccCCCCCCCCCeEE---EcC
Q 036521          212 YVYSD-IFLHRDKNFMPRN-------PA-----AWSAWNFLGGLDGKACLTYWLNV---LQNIGDGETGLPFLV---TLN  272 (602)
Q Consensus       212 y~~~~-~vl~~d~~l~p~~-------~~-----~w~s~n~~~~~~~~~~~t~~~~~---~~~l~~~~~~~~v~~---tl~  272 (602)
                      |.++. +.+..+.++.+..       ..     .|+...+...+++...+.+.++.   +..+++++..+.+.+   .+.
T Consensus       299 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~  378 (453)
T TIGR02731       299 GVPVINVHIWFDRKLTTVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLF  378 (453)
T ss_pred             CCcEEEEEEEEccccCCCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhC
Confidence            76654 3445555543211       10     11111111112223444444432   222333212111221   122


Q ss_pred             CCC----CCcc-eEEEE---EccCCCCChhHHHHHHHHHhh-cCCCCeEEeccccC---CCCChhHHHHHHHHHHHh
Q 036521          273 PDH----TPNN-TLLKW---STGHPVPSVAASKASLELDHI-QGKRGIWFCEAYQG---YGFHEDGLKAGMIAAHGV  337 (602)
Q Consensus       273 p~~----~p~~-~l~r~---~~~~p~~~~~~~~~~~~l~~l-qg~~gl~~aG~~~g---~g~~E~av~SG~~aA~~l  337 (602)
                      |..    .+.. +-+.|   .++.+...++.   ....+.+ .+.++++|||+|+.   .|.+|+|+.||.+||++|
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~---~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v  452 (453)
T TIGR02731       379 PNHIKADSPAKILKYKVVKTPRSVYKTTPGR---QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI  452 (453)
T ss_pred             CcccCCCCCceEEEEEEEECCCceeccCCCC---hhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence            211    1222 22333   22322222221   1222333 45789999999984   357999999999999986

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.75  E-value=1.3e-17  Score=182.07  Aligned_cols=271  Identities=14%  Similarity=0.111  Sum_probs=165.5

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHh-HHHHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHS-YVNKV  140 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~-l~~~l  140 (602)
                      .+++|+++|+++++.++...++++.|++.+++++++++++...+..+++++...     ..+....-++||.++ +.++|
T Consensus       151 ~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~-----~~~s~~~~~~g~~~~~l~~pl  225 (474)
T TIGR02732       151 LDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAK-----TEASKLRMLKGSPDKYLTKPI  225 (474)
T ss_pred             hccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----CCcceeeeecCCcchhHHHHH
Confidence            367999999999988888899999999999999999887444443333444321     222234445677666 56779


Q ss_pred             HHHHhcCCCeEEeCCceeEEEecC--CeE----EEEeCCC---cEEecCEEEEecChHHHHhhccCCCC--HHHHhhccC
Q 036521          141 IALLESLGCQIKTGCEVCSVLQYD--EGR----TEVRGDG---FQGFYDGCIMAVHAPDALRILGNQST--FEEKRLLGA  209 (602)
Q Consensus       141 a~~l~~~g~~v~l~t~V~~i~~~~--~gv----~v~~~~g---~~~~ad~VI~A~p~~~a~~ll~~~~~--~~~~~~l~~  209 (602)
                      .+.|.++|++|+++++|++|+.++  +++    .|...+|   +++.||+||+|+|++.+.+|+++ ..  ......+.+
T Consensus       226 ~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~-~~~~~~~~~~l~~  304 (474)
T TIGR02732       226 LEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQ-EWRQFEEFDNIYK  304 (474)
T ss_pred             HHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCCh-hhhcCHHHhhHhc
Confidence            999999999999999999998854  332    2233333   45889999999999999999985 32  235667788


Q ss_pred             ccccceeEE-EecCCCCCCCC-------------CC-----ccccccccc------C----CCCCeE-EEEec---cccc
Q 036521          210 FQYVYSDIF-LHRDKNFMPRN-------------PA-----AWSAWNFLG------G----LDGKAC-LTYWL---NVLQ  256 (602)
Q Consensus       210 ~~y~~~~~v-l~~d~~l~p~~-------------~~-----~w~s~n~~~------~----~~~~~~-~t~~~---~~~~  256 (602)
                      +.|.++.++ +.+|..+....             ..     ....|.|..      +    +.+... +...+   +.+.
T Consensus       305 l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  384 (474)
T TIGR02732       305 LDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWM  384 (474)
T ss_pred             CCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhc
Confidence            888888654 46664332110             00     111222200      0    111111 11111   2233


Q ss_pred             cCCCCCCCCCeE---EEcCCCCCCcceE--EEEEccCCCCChhHHHHHHHHHhhcCCCCeEEeccccCCCC---ChhHHH
Q 036521          257 NIGDGETGLPFL---VTLNPDHTPNNTL--LKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGF---HEDGLK  328 (602)
Q Consensus       257 ~l~~~~~~~~v~---~tl~p~~~p~~~l--~r~~~~~p~~~~~~~~~~~~l~~lqg~~gl~~aG~~~g~g~---~E~av~  328 (602)
                      .+++++..+.+.   ..+.|......++  .+.++.+++|...+.....++......+|+|+||||+..++   +|+|++
T Consensus       385 ~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~  464 (474)
T TIGR02732       385 PESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATL  464 (474)
T ss_pred             CCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHH
Confidence            333322211221   2334432222222  24566666665221111122233345789999999997644   999999


Q ss_pred             HHHHHHHHhc
Q 036521          329 AGMIAAHGVL  338 (602)
Q Consensus       329 SG~~aA~~ll  338 (602)
                      ||.+||+.|+
T Consensus       465 sG~~aA~~i~  474 (474)
T TIGR02732       465 SGRQAAAAIL  474 (474)
T ss_pred             HHHHHHHHhC
Confidence            9999999874

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02612 phytoene desaturase

Probab=99.75  E-value=3.1e-17  Score=182.49  Aligned_cols=160  Identities=11%  Similarity=0.115  Sum_probs=115.1

Q ss_pred             CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCc-HhHHHH
Q 036521           61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRS-HSYVNK  139 (602)
Q Consensus        61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~-~~l~~~  139 (602)
                      ..+++|+.+|++++++++.+.+.++.||+.++++.++++++   +..++..+..  ++....+.......|+. ..+.++
T Consensus       239 ~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S---~~~~l~~l~~--~l~~~~gs~~~~~~G~~~~~l~~~  313 (567)
T PLN02612        239 AQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELS---MQCILIALNR--FLQEKHGSKMAFLDGNPPERLCMP  313 (567)
T ss_pred             hcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhh---HHHHHHHHHH--HHhccCCceEeeecCCchHHHHHH
Confidence            45789999999999999999999999999999999888763   3333322221  11111222333334443 578899


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEecCCe--EEEEeCCCcEEecCEEEEecChHHHHhhccCCC-CHHHHhhccCcccccee
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQYDEG--RTEVRGDGFQGFYDGCIMAVHAPDALRILGNQS-TFEEKRLLGAFQYVYSD  216 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~~~g--v~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~-~~~~~~~l~~~~y~~~~  216 (602)
                      |++.|.++|++|+++++|++|..++++  +.|.+.+|+++.+|+||+|+|++.+.+|++... .....+.+.++.+.++.
T Consensus       314 l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~  393 (567)
T PLN02612        314 IVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVI  393 (567)
T ss_pred             HHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeE
Confidence            999998889999999999999987666  346667787889999999999999988887422 22445556667776654


Q ss_pred             -EEEecCCCC
Q 036521          217 -IFLHRDKNF  225 (602)
Q Consensus       217 -~vl~~d~~l  225 (602)
                       +.+.+|..+
T Consensus       394 ~v~l~~dr~~  403 (567)
T PLN02612        394 NVHIWFDRKL  403 (567)
T ss_pred             EEEEEECccc
Confidence             345667664

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.74  E-value=1.2e-16  Score=162.22  Aligned_cols=273  Identities=13%  Similarity=0.129  Sum_probs=191.5

Q ss_pred             CCCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhH-HhhhHHHHHHHHHhcCcccc------------------
Q 036521           60 DIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGI-MSFSAFSILSFYRNHHLLQL------------------  120 (602)
Q Consensus        60 ~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~-~~~p~~~~l~~~~~~g~~~~------------------  120 (602)
                      +...++|+.+|++| +|++++.+++++||+.+||+.|+.++ ++..+..+.+.++.||.+..                  
T Consensus       151 ~~~~dESV~sF~~R-rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~  229 (491)
T KOG1276|consen  151 DPSADESVESFARR-RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETA  229 (491)
T ss_pred             CCCccccHHHHHHH-hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccch
Confidence            34568999999999 59999999999999999999999887 55566666677777772210                  


Q ss_pred             ------CCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecC-CeEEEEe--CCCc-EEecCEEEEecChHH
Q 036521          121 ------FGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYD-EGRTEVR--GDGF-QGFYDGCIMAVHAPD  190 (602)
Q Consensus       121 ------~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~-~gv~v~~--~~g~-~~~ad~VI~A~p~~~  190 (602)
                            .+.-.++.++||++.+++++.+.|.++...|.++-++..+.... ++|.++.  .++. ....+++..|+|+..
T Consensus       230 ~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k  309 (491)
T KOG1276|consen  230 LSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVK  309 (491)
T ss_pred             hhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHH
Confidence                  11223567999999999999999987777788999999887654 4476654  4554 357888888999999


Q ss_pred             HHhhccCCCCHHHHhhccCccccceeEEEec--CC----C------CCCCCC--------CcccccccccC-CCCCeEEE
Q 036521          191 ALRILGNQSTFEEKRLLGAFQYVYSDIFLHR--DK----N------FMPRNP--------AAWSAWNFLGG-LDGKACLT  249 (602)
Q Consensus       191 a~~ll~~~~~~~~~~~l~~~~y~~~~~vl~~--d~----~------l~p~~~--------~~w~s~n~~~~-~~~~~~~t  249 (602)
                      .+.+++. ..+.....|..++|.++.+|..+  ++    .      ++|...        ..+.|..|... +++  .+|
T Consensus       310 ~a~ll~~-~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~--~vt  386 (491)
T KOG1276|consen  310 LAKLLRG-LQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSP--KVT  386 (491)
T ss_pred             hhhhccc-cchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCCCc--eEE
Confidence            9999996 78888999999999999877643  21    1      345211        14566666553 222  344


Q ss_pred             Eeccc--ccc---CCCCCCCCCeE--------EEcCCCCCCcce-EEEEEccCCCCChhHHHHHHHHHh-hcCC--CCeE
Q 036521          250 YWLNV--LQN---IGDGETGLPFL--------VTLNPDHTPNNT-LLKWSTGHPVPSVAASKASLELDH-IQGK--RGIW  312 (602)
Q Consensus       250 ~~~~~--~~~---l~~~~~~~~v~--------~tl~p~~~p~~~-l~r~~~~~p~~~~~~~~~~~~l~~-lqg~--~gl~  312 (602)
                      +.++.  ..+   +..  ..+++.        .++.....|..+ ++-|....|||+++|-+.+..+.. ++..  .+++
T Consensus       387 vm~gg~~~~n~~~~~~--S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~  464 (491)
T KOG1276|consen  387 VMMGGGGSTNTSLAVP--SPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLF  464 (491)
T ss_pred             EEecccccccCcCCCC--CHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceE
Confidence            43321  111   111  001111        122222234433 568888999999999888877766 5543  5999


Q ss_pred             EeccccCCCCChhHHHHHHHHHHHhc
Q 036521          313 FCEAYQGYGFHEDGLKAGMIAAHGVL  338 (602)
Q Consensus       313 ~aG~~~g~g~~E~av~SG~~aA~~ll  338 (602)
                      +||+|++.--+.|||.||+.+|..++
T Consensus       465 l~G~~y~Gv~vgdcI~sg~~~A~~v~  490 (491)
T KOG1276|consen  465 LGGNHYGGVSVGDCIESGRKTAVEVI  490 (491)
T ss_pred             eeccccCCCChhHHHHhhHHHHHhhc
Confidence            99999843337899999999998764

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.73  E-value=1.2e-18  Score=166.96  Aligned_cols=200  Identities=17%  Similarity=0.208  Sum_probs=145.8

Q ss_pred             EEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc-EEecCEEEEecChHHHHhhccC---CCCHH
Q 036521          127 LTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF-QGFYDGCIMAVHAPDALRILGN---QSTFE  202 (602)
Q Consensus       127 ~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~-~~~ad~VI~A~p~~~a~~ll~~---~~~~~  202 (602)
                      +....||++|++.|+..|     +|.++++|++|.+.++.|+|++++|. ..+||.||+|+|+|++..||..   ....+
T Consensus       101 yvg~pgmsalak~LAtdL-----~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~  175 (331)
T COG3380         101 YVGEPGMSALAKFLATDL-----TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAA  175 (331)
T ss_pred             cccCcchHHHHHHHhccc-----hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHH
Confidence            677889999999999999     89999999999999999999986654 5689999999999999999953   14556


Q ss_pred             HHhhccCccccceeEE-EecCCCC-CC-------CCCCcccccccccC--CCCCeEEEEeccc---cccCCCCCCCCCeE
Q 036521          203 EKRLLGAFQYVYSDIF-LHRDKNF-MP-------RNPAAWSAWNFLGG--LDGKACLTYWLNV---LQNIGDGETGLPFL  268 (602)
Q Consensus       203 ~~~~l~~~~y~~~~~v-l~~d~~l-~p-------~~~~~w~s~n~~~~--~~~~~~~t~~~~~---~~~l~~~~~~~~v~  268 (602)
                      .+..+..+.|.||+++ +++...+ .|       .....|.+.+-+++  ......++++++.   .+|+..  ..+.+.
T Consensus       176 l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G~~vdg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~--~~e~~i  253 (331)
T COG3380         176 LRAALADVVYAPCWSAVLGYPQPLDRPWPGNFVDGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDH--PAEQVI  253 (331)
T ss_pred             HHHhhccceehhHHHHHhcCCccCCCCCCCcccCCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcC--CHHHHH
Confidence            8889999999999864 4555322 22       23458888886663  1223367777653   344444  212322


Q ss_pred             -------EEcCCCCCCcc---eEEEEEccCCCCChhHHHHHHHHHhh-cCCCCeEEeccccCCCCChhHHHHHHHHHHHh
Q 036521          269 -------VTLNPDHTPNN---TLLKWSTGHPVPSVAASKASLELDHI-QGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGV  337 (602)
Q Consensus       269 -------~tl~p~~~p~~---~l~r~~~~~p~~~~~~~~~~~~l~~l-qg~~gl~~aG~~~g~g~~E~av~SG~~aA~~l  337 (602)
                             +++.+...|++   ..++|+|++|.-...      ..... +..-+++.|||||++|++|+|+.||+.+|+.|
T Consensus       254 ~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~------~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i  327 (331)
T COG3380         254 VALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVA------GPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHI  327 (331)
T ss_pred             HHHHHhhhhccCCCCCcchHHHhhcccccccccccc------CCccccCCCCceeeecccccCcchhHHHhccHHHHHHH
Confidence                   23333222333   588999999954222      11112 45789999999999999999999999999998


Q ss_pred             cC
Q 036521          338 LG  339 (602)
Q Consensus       338 l~  339 (602)
                      +.
T Consensus       328 ~~  329 (331)
T COG3380         328 LN  329 (331)
T ss_pred             Hh
Confidence            64

>PRK07233 hypothetical protein; Provisional

Probab=99.73  E-value=2.8e-15  Score=162.43  Aligned_cols=271  Identities=16%  Similarity=0.153  Sum_probs=172.9

Q ss_pred             CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCcccc-CCCCcEEEecCCcHhHHHH
Q 036521           61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQL-FGRPQWLTVRSRSHSYVNK  139 (602)
Q Consensus        61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~-~~~~~~~~~~gG~~~l~~~  139 (602)
                      ..+++|+++|++++ +++...+.++.|++..+|+.+++++   ++..++..+...+.... ....++..++||++.++++
T Consensus       128 ~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~  203 (434)
T PRK07233        128 ALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDV---SAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDA  203 (434)
T ss_pred             ccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCcccc---CHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHH
Confidence            34679999999996 5788888999999999999988875   44445444432221100 0123466789999999999


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeE-E
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDI-F  218 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~-v  218 (602)
                      |++.+.+.|++|+++++|++|+.+++++.++..+++++.||+||+|+|++.+.++++. ..+...+.+.+++|.+..+ .
T Consensus       204 l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~  282 (434)
T PRK07233        204 LAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLVPD-LPADVLARLRRIDYQGVVCMV  282 (434)
T ss_pred             HHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhcCC-CcHHHHhhhcccCccceEEEE
Confidence            9999988899999999999999888887655556668999999999999999999874 5566667788888887765 3


Q ss_pred             EecCCCCCC-------CCCCcccc----cccccC--CCCCeE--EEEeccccc---cCCCCCCCCCeEE---EcCCCCCC
Q 036521          219 LHRDKNFMP-------RNPAAWSA----WNFLGG--LDGKAC--LTYWLNVLQ---NIGDGETGLPFLV---TLNPDHTP  277 (602)
Q Consensus       219 l~~d~~l~p-------~~~~~w~s----~n~~~~--~~~~~~--~t~~~~~~~---~l~~~~~~~~v~~---tl~p~~~p  277 (602)
                      +..+..+.+       .....+..    .++...  +++..+  +.++.....   .+++++..+.+.+   .+.|...+
T Consensus       283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~  362 (434)
T PRK07233        283 LKLRRPLTDYYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDR  362 (434)
T ss_pred             EEecCCCCCCceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCCh
Confidence            455544321       10000000    011111  122222  222322111   1111101011111   12232211


Q ss_pred             c----ceEEEEEccCCCCChhHHHHHHHHHhh-cCCCCeEEeccccC---CCCChhHHHHHHHHHHHhcC
Q 036521          278 N----NTLLKWSTGHPVPSVAASKASLELDHI-QGKRGIWFCEAYQG---YGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       278 ~----~~l~r~~~~~p~~~~~~~~~~~~l~~l-qg~~gl~~aG~~~g---~g~~E~av~SG~~aA~~ll~  339 (602)
                      .    ..+.+|.++.|.+.+++..   .+..+ +..+|+++||+++.   .+.+|+|+.||+.||++|+.
T Consensus       363 ~~~~~~~~~r~~~a~~~~~~g~~~---~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~  429 (434)
T PRK07233        363 DDVRAVRISRAPYAQPIYEPGYLD---KIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILE  429 (434)
T ss_pred             hheeeEEEEEeccccccccCchhh---cCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhh
Confidence            1    1356788888888766322   22222 34689999999642   23599999999999999965

>PRK07208 hypothetical protein; Provisional

Probab=99.71  E-value=1.5e-15  Score=166.95  Aligned_cols=274  Identities=14%  Similarity=0.178  Sum_probs=174.7

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHH-------------HHHhc-C------ccccCC
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILS-------------FYRNH-H------LLQLFG  122 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~-------------~~~~~-g------~~~~~~  122 (602)
                      +++|+++|+++ .+++++.+.++.|++.++|+++++++   ++.+++.             .+... +      ......
T Consensus       131 ~~~s~~e~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (479)
T PRK07208        131 EEDSFEDWVIN-RFGRRLYSTFFKGYTEKVWGVPCDEI---SADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSL  206 (479)
T ss_pred             CCCCHHHHHHH-hhCHHHHHHHHHHhhhhhhCCChHHC---CChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccc
Confidence            67999999998 58999999999999999999999876   2222221             11110 0      000000


Q ss_pred             CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE--EEe--CCCc--EEecCEEEEecChHHHHhhcc
Q 036521          123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT--EVR--GDGF--QGFYDGCIMAVHAPDALRILG  196 (602)
Q Consensus       123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~--v~~--~~g~--~~~ad~VI~A~p~~~a~~ll~  196 (602)
                      ...+..++||+++++++|++.+.+.|++|+++++|++|.++++++.  ++.  .+|+  .+.||+||+|+|+..+.+++.
T Consensus       207 ~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~  286 (479)
T PRK07208        207 IEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALD  286 (479)
T ss_pred             eeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcC
Confidence            1245567899999999999999888999999999999999877742  222  2353  578999999999999999887


Q ss_pred             CCCCHHHHhhccCcccccee-EEEecCCCC-CCCC-------CCc------ccccccccCCCCC-eEE--EEec-c--cc
Q 036521          197 NQSTFEEKRLLGAFQYVYSD-IFLHRDKNF-MPRN-------PAA------WSAWNFLGGLDGK-ACL--TYWL-N--VL  255 (602)
Q Consensus       197 ~~~~~~~~~~l~~~~y~~~~-~vl~~d~~l-~p~~-------~~~------w~s~n~~~~~~~~-~~~--t~~~-~--~~  255 (602)
                      +++.+...+.+..++|.+.. +.++++... .|..       ...      ...+.....|++. ..+  .+.. .  ..
T Consensus       287 ~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~  366 (479)
T PRK07208        287 PPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDL  366 (479)
T ss_pred             CCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCcc
Confidence            54566777778889988754 334555431 1111       000      0001101112222 212  1211 1  11


Q ss_pred             ccCCCCCCCCCeEE---EcCCCCCCcc---eEEEEEccCCCCChhHHHHHHHHHh-hcCCCCeEEecccc--CCCCChhH
Q 036521          256 QNIGDGETGLPFLV---TLNPDHTPNN---TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCEAYQ--GYGFHEDG  326 (602)
Q Consensus       256 ~~l~~~~~~~~v~~---tl~p~~~p~~---~l~r~~~~~p~~~~~~~~~~~~l~~-lqg~~gl~~aG~~~--g~g~~E~a  326 (602)
                      ..+++++..+.+..   .+++......   .+.+|.++.|+|+..+.+....+.. ++..+|+++||.+.  .+-.+|+|
T Consensus       367 ~~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a  446 (479)
T PRK07208        367 WNMSDEDLIALAIQELARLGLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHS  446 (479)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHH
Confidence            12222111011111   1222111111   3678999999999999888877764 46678999999764  34458999


Q ss_pred             HHHHHHHHHHhcCC
Q 036521          327 LKAGMIAAHGVLGK  340 (602)
Q Consensus       327 v~SG~~aA~~ll~~  340 (602)
                      +.||+++|+.|+..
T Consensus       447 ~~sg~~~a~~i~~~  460 (479)
T PRK07208        447 MLTAMLAVENIIAG  460 (479)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998664

>PLN02529 lysine-specific histone demethylase 1

Probab=99.62  E-value=3.2e-14  Score=160.08  Aligned_cols=154  Identities=11%  Similarity=-0.007  Sum_probs=108.6

Q ss_pred             CCCCCHHHHHHhcC------CCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHh
Q 036521           62 DRDETLGQFIKSRG------YSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHS  135 (602)
Q Consensus        62 ~~~~s~~~~l~~~~------~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~  135 (602)
                      .+++|+++|+++..      +++.. ..++...+..+..+.+.++..+++...   ....+   ...+++...+.||+++
T Consensus       286 ~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~---~~~~~---~e~~G~~~~i~GG~~~  358 (738)
T PLN02529        286 ANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYW---DQDDP---YEMGGDHCFLAGGNWR  358 (738)
T ss_pred             ccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHh---hhccc---cccCCceEEECCcHHH
Confidence            46899999998653      34443 234444554455555555554454333   22211   1234567889999999


Q ss_pred             HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh--hc-cCCCCHHHHhhccCccc
Q 036521          136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR--IL-GNQSTFEEKRLLGAFQY  212 (602)
Q Consensus       136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~--ll-~~~~~~~~~~~l~~~~y  212 (602)
                      ++++|++.+     +|+++++|++|..++++|+|++. ++++.||+||+|+|+..+.+  +. .+++++...+.+.++.|
T Consensus       359 Li~aLA~~L-----~IrLnt~V~~I~~~~dGVtV~t~-~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~y  432 (738)
T PLN02529        359 LINALCEGV-----PIFYGKTVDTIKYGNDGVEVIAG-SQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGF  432 (738)
T ss_pred             HHHHHHhcC-----CEEcCCceeEEEEcCCeEEEEEC-CEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCC
Confidence            999999877     69999999999999999998764 44789999999999999874  32 33355566788999999


Q ss_pred             ccee-EEEecCCCCCCC
Q 036521          213 VYSD-IFLHRDKNFMPR  228 (602)
Q Consensus       213 ~~~~-~vl~~d~~l~p~  228 (602)
                      .++. ++++++..+++.
T Consensus       433 G~v~KV~L~F~~~FW~~  449 (738)
T PLN02529        433 GLLNKVAMVFPSVFWGE  449 (738)
T ss_pred             ceeEEEEEEeCCccccC
Confidence            7764 667788776643

>PLN02268 probable polyamine oxidase

Probab=99.62  E-value=2.1e-14  Score=155.92  Aligned_cols=257  Identities=18%  Similarity=0.172  Sum_probs=154.7

Q ss_pred             CCCCCHHHHHHhc----------CCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecC
Q 036521           62 DRDETLGQFIKSR----------GYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRS  131 (602)
Q Consensus        62 ~~~~s~~~~l~~~----------~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~g  131 (602)
                      .+++|+++|+++.          ++++++.+.++.| +.++|+++++++   ++..+..    ..++  . +. ...+.+
T Consensus       131 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l---s~~~~~~----~~~~--~-g~-~~~~~~  198 (435)
T PLN02268        131 EEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTI---SLKSWDQ----EELL--E-GG-HGLMVR  198 (435)
T ss_pred             CCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhC---chhhcCC----cccc--C-CC-ceeecC
Confidence            4689999986442          1567777777788 456788887765   3322110    0011  1 11 235788


Q ss_pred             CcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhh-c--cCCCCHHHHhhcc
Q 036521          132 RSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRI-L--GNQSTFEEKRLLG  208 (602)
Q Consensus       132 G~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~l-l--~~~~~~~~~~~l~  208 (602)
                      |+++++++|++.+     +|+++++|++|.+++++|.|++.+|+++.||+||+|+|+..+.+. +  .+++++...+.+.
T Consensus       199 G~~~l~~~l~~~~-----~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~  273 (435)
T PLN02268        199 GYDPVINTLAKGL-----DIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAIS  273 (435)
T ss_pred             CHHHHHHHHhccC-----ceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHH
Confidence            9999999998765     799999999999999999999888878999999999999998653 2  2224556677788


Q ss_pred             Ccccccee-EEEecCCCCCCCCCC-------ccccccccc--CCCCCeEEEEeccc-----cccCCCCCCCCCeEE---E
Q 036521          209 AFQYVYSD-IFLHRDKNFMPRNPA-------AWSAWNFLG--GLDGKACLTYWLNV-----LQNIGDGETGLPFLV---T  270 (602)
Q Consensus       209 ~~~y~~~~-~vl~~d~~l~p~~~~-------~w~s~n~~~--~~~~~~~~t~~~~~-----~~~l~~~~~~~~v~~---t  270 (602)
                      +++|.++. ++++++..+++....       .+....+..  ...+...++++...     +..+++++..+.+..   .
T Consensus       274 ~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~  353 (435)
T PLN02268        274 DLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKK  353 (435)
T ss_pred             hCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            88887654 677888777654211       011111111  11223334443321     222222111011111   1


Q ss_pred             cCCC-CCCcc-eEEEEE--------ccCCCCChhH-HHHHHHHHhhcCCCCeEEeccccC---CCCChhHHHHHHHHHHH
Q 036521          271 LNPD-HTPNN-TLLKWS--------TGHPVPSVAA-SKASLELDHIQGKRGIWFCEAYQG---YGFHEDGLKAGMIAAHG  336 (602)
Q Consensus       271 l~p~-~~p~~-~l~r~~--------~~~p~~~~~~-~~~~~~l~~lqg~~gl~~aG~~~g---~g~~E~av~SG~~aA~~  336 (602)
                      +.+. ..|.. .+++|.        |+.+  .++. ......+.  +...+++|||+++.   .|++|+|+.||++||++
T Consensus       354 ~~~~~~~p~~~~~~~W~~dp~~~G~~~~~--~~g~~~~~~~~l~--~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~  429 (435)
T PLN02268        354 MLPDATEPVQYLVSRWGSDPNSLGCYSYD--LVGKPHDLYERLR--APVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEE  429 (435)
T ss_pred             HcCCCCCccEEEecccCCCCCCCccCCCC--CCCCCHHHHHHHh--CCCCCeEEeeccCCCcccccHHHHHHHHHHHHHH
Confidence            1121 12322 466775        2221  1221 11111111  34568999999973   57899999999999999


Q ss_pred             hcC
Q 036521          337 VLG  339 (602)
Q Consensus       337 ll~  339 (602)
                      |+.
T Consensus       430 v~~  432 (435)
T PLN02268        430 CRM  432 (435)
T ss_pred             HHH
Confidence            864

>PLN02244 tocopherol O-methyltransferase

Probab=99.60  E-value=7e-15  Score=153.52  Aligned_cols=110  Identities=26%  Similarity=0.351  Sum_probs=98.8

Q ss_pred             CchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCC--CccHHHHHHHHHHHHHHHccC-----CCCCeEEEEecCc
Q 036521          489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDE--DEDLKVAQMRKHSLQIEKARV-----SKGHGVLEIGCGW  561 (602)
Q Consensus       489 ~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l~l-----~~g~~vLDiGcG~  561 (602)
                      .+....+++|..|||..+++|+.++++.|+  ++||+.+  ..++.+||.++++.+++.+++     +++++|||||||+
T Consensus        52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~  129 (340)
T PLN02244         52 AATADLKEGIAEFYDESSGVWEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI  129 (340)
T ss_pred             cchhhHHHHHHHHHccchHHHHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence            445678889999999999999999998764  6888764  678999999999999999988     7889999999999


Q ss_pred             hHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          562 GTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       562 G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      |.++..++++++++|+|||+|++|++.|+++++..|+.+
T Consensus       130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~  168 (340)
T PLN02244        130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSD  168 (340)
T ss_pred             CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            999999999778999999999999999999999888753

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.46  E-value=7.5e-12  Score=141.66  Aligned_cols=208  Identities=15%  Similarity=0.123  Sum_probs=127.3

Q ss_pred             CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh--h-ccCCCC
Q 036521          124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR--I-LGNQST  200 (602)
Q Consensus       124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~--l-l~~~~~  200 (602)
                      +..+.+.||+++|+++|++.|     +|+++++|++|...+++|.|. .+|+++.||+||+|+|+..+.+  + +.++++
T Consensus       427 G~~~~v~GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~dgV~V~-~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP  500 (808)
T PLN02328        427 GDHCFIPGGNDTFVRELAKDL-----PIFYERTVESIRYGVDGVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELP  500 (808)
T ss_pred             CeEEEECCcHHHHHHHHHhhC-----CcccCCeeEEEEEcCCeEEEE-eCCeEEEcCEEEECCCHHHHhhcccccCCCCC
Confidence            457889999999999999998     599999999999999999874 4576899999999999999874  3 222356


Q ss_pred             HHHHhhccCcccccee-EEEecCCCCCCCCCC-------------cc-cccccccCCCCCeEEEEeccc-----cccCCC
Q 036521          201 FEEKRLLGAFQYVYSD-IFLHRDKNFMPRNPA-------------AW-SAWNFLGGLDGKACLTYWLNV-----LQNIGD  260 (602)
Q Consensus       201 ~~~~~~l~~~~y~~~~-~vl~~d~~l~p~~~~-------------~w-~s~n~~~~~~~~~~~t~~~~~-----~~~l~~  260 (602)
                      +...+.+.++.|..+. +++.++..+++....             .| ..+++... .+...+..++..     ...+++
T Consensus       501 ~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~-~G~~vLvafv~G~~A~~~e~lsd  579 (808)
T PLN02328        501 QRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSV-SGGPLLIALVAGDAAVKFETLSP  579 (808)
T ss_pred             HHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCC-CCCcEEEEEecChhhHHHhcCCH
Confidence            6777889999997764 566777766543211             00 00111111 122333333321     112222


Q ss_pred             CCCCCCeEEE----cCCC----CCCcc-eEEEEE--------ccCCCCChhHH-HHHHHHHhhcCCCCeEEeccccC---
Q 036521          261 GETGLPFLVT----LNPD----HTPNN-TLLKWS--------TGHPVPSVAAS-KASLELDHIQGKRGIWFCEAYQG---  319 (602)
Q Consensus       261 ~~~~~~v~~t----l~p~----~~p~~-~l~r~~--------~~~p~~~~~~~-~~~~~l~~lqg~~gl~~aG~~~g---  319 (602)
                      ++..+.+...    +.+.    ..|.. .+++|.        |+.+.  ++.. .....+.+--+.++|+|||+++.   
T Consensus       580 eE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~--pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~  657 (808)
T PLN02328        580 VESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVA--VGSSGDDYDILAESVGDGRVFFAGEATNKQY  657 (808)
T ss_pred             HHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCC--CCCchhHHHHHhccCCCCCEEEEEhhHhCCC
Confidence            1111111111    2221    12222 467886        33322  2211 11111111002468999999973   


Q ss_pred             CCCChhHHHHHHHHHHHhcCC
Q 036521          320 YGFHEDGLKAGMIAAHGVLGK  340 (602)
Q Consensus       320 ~g~~E~av~SG~~aA~~ll~~  340 (602)
                      .|++|+|+.||+++|++|+..
T Consensus       658 ~GtVhGAi~SGlRAA~eIl~~  678 (808)
T PLN02328        658 PATMHGAFLSGMREAANILRV  678 (808)
T ss_pred             CeEhHHHHHHHHHHHHHHHHH
Confidence            568999999999999999764

>PLN03000 amine oxidase

Probab=99.46  E-value=4.7e-12  Score=143.25  Aligned_cols=211  Identities=11%  Similarity=0.067  Sum_probs=127.7

Q ss_pred             CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHH--hhcc-CCCC
Q 036521          124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDAL--RILG-NQST  200 (602)
Q Consensus       124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~--~ll~-~~~~  200 (602)
                      ++.+.+.||+++|+++|++.|     +|+++++|++|.+++++|.|++.++ ++.||+||+|+|+..+.  .+.. +++.
T Consensus       371 G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~PpLP  444 (881)
T PLN03000        371 GDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPELP  444 (881)
T ss_pred             CceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHHHhhCceeeCCCCC
Confidence            456789999999999999998     5999999999999999999987644 79999999999999988  3333 2355


Q ss_pred             HHHHhhccCccccce-eEEEecCCCCCCCCCC-------------cccc-cccccCCCCCeEEEEec-cc----cccCCC
Q 036521          201 FEEKRLLGAFQYVYS-DIFLHRDKNFMPRNPA-------------AWSA-WNFLGGLDGKACLTYWL-NV----LQNIGD  260 (602)
Q Consensus       201 ~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~~~-------------~w~s-~n~~~~~~~~~~~t~~~-~~----~~~l~~  260 (602)
                      +...+.+.++.|... .+++.++..+++....             .|.. +++. +..+...+..++ +.    +..+++
T Consensus       445 ~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~s-p~~G~pVLvafv~Gd~A~~le~lSd  523 (881)
T PLN03000        445 QRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYA-PVAGGPLLIALVAGEAAHKFETMPP  523 (881)
T ss_pred             HHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCC-CCCCCcEEEEEecCchhHHhhcCCH
Confidence            667788999999765 4677777776643311             1111 1111 112223333333 21    222332


Q ss_pred             CCCCCCeEEE----cCCC--C--CCcc-eEEEEEc---cC---CCCChhHHH-HHHHHHhhcCCCCeEEeccccC---CC
Q 036521          261 GETGLPFLVT----LNPD--H--TPNN-TLLKWST---GH---PVPSVAASK-ASLELDHIQGKRGIWFCEAYQG---YG  321 (602)
Q Consensus       261 ~~~~~~v~~t----l~p~--~--~p~~-~l~r~~~---~~---p~~~~~~~~-~~~~l~~lqg~~gl~~aG~~~g---~g  321 (602)
                      ++..+.+...    +.+.  .  .|.. .+++|..   +.   ..+.++... ....+.+--+.++++|||..+.   .|
T Consensus       524 eE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~G  603 (881)
T PLN03000        524 TDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPA  603 (881)
T ss_pred             HHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCe
Confidence            1111111111    2221  1  1222 3567731   11   111122111 1112211002458999999873   57


Q ss_pred             CChhHHHHHHHHHHHhcCCc
Q 036521          322 FHEDGLKAGMIAAHGVLGKR  341 (602)
Q Consensus       322 ~~E~av~SG~~aA~~ll~~~  341 (602)
                      ++|+|+.||+++|++|+...
T Consensus       604 TVhGAieSGlRAA~eIl~~l  623 (881)
T PLN03000        604 TMHGAFVTGLREAANMAQSA  623 (881)
T ss_pred             eHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999997643

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.45  E-value=2e-14  Score=154.61  Aligned_cols=272  Identities=19%  Similarity=0.184  Sum_probs=147.9

Q ss_pred             CCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHHH
Q 036521           64 DETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIAL  143 (602)
Q Consensus        64 ~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~  143 (602)
                      ..++.+|+....+.+.+...++.++........+...........+..+...........+.+....|++..+...+++.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  221 (450)
T PF01593_consen  142 LESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEE  221 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhh
Confidence            45777777666666665554555566555544333321112111111111100000122344556677777777777766


Q ss_pred             HhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh-hccCCCCHHHHhhccCccccce-eEEEec
Q 036521          144 LESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR-ILGNQSTFEEKRLLGAFQYVYS-DIFLHR  221 (602)
Q Consensus       144 l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~-ll~~~~~~~~~~~l~~~~y~~~-~~vl~~  221 (602)
                      +   |.+|+++++|++|+.++++|.|++.+|+++.||+||+|+|+..+.+ .+.+++.....+.+..++|.+. .+++.+
T Consensus       222 ~---g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~  298 (450)
T PF01593_consen  222 L---GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGF  298 (450)
T ss_dssp             H---GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             c---CceeecCCcceeccccccccccccccceEEecceeeecCchhhhhhhhhcccccccccccccccccCcceeEEEee
Confidence            6   7799999999999999999999999998899999999999999996 3332244446777889999875 455677


Q ss_pred             CCCCCCCCC----------Cccccccccc--CC---CCCeEEEEeccc----cccCCCCCCCCCeEE---EcCCC-CCCc
Q 036521          222 DKNFMPRNP----------AAWSAWNFLG--GL---DGKACLTYWLNV----LQNIGDGETGLPFLV---TLNPD-HTPN  278 (602)
Q Consensus       222 d~~l~p~~~----------~~w~s~n~~~--~~---~~~~~~t~~~~~----~~~l~~~~~~~~v~~---tl~p~-~~p~  278 (602)
                      +....+...          ..+..+.+..  .+   ++.....+....    ...++.++..+.+..   .+.+. ..++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~  378 (450)
T PF01593_consen  299 DRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPD  378 (450)
T ss_dssp             SSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGE
T ss_pred             ecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhccccccccc
Confidence            777655431          0111111111  11   122233333221    222222111011111   11221 1122


Q ss_pred             c---eEEEEEc-cCCCCChhH---HHHHHHHHhh-cCC-CCeEEeccccCC---CCChhHHHHHHHHHHHhc
Q 036521          279 N---TLLKWST-GHPVPSVAA---SKASLELDHI-QGK-RGIWFCEAYQGY---GFHEDGLKAGMIAAHGVL  338 (602)
Q Consensus       279 ~---~l~r~~~-~~p~~~~~~---~~~~~~l~~l-qg~-~gl~~aG~~~g~---g~~E~av~SG~~aA~~ll  338 (602)
                      +   .+.+|.. ..+..+...   ......+..+ +.. ++|+|||+|+..   |.+|+|+.||.+||++||
T Consensus       379 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il  450 (450)
T PF01593_consen  379 PIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL  450 (450)
T ss_dssp             ESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence            2   3456643 223321111   1111223333 333 799999999853   479999999999999985

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PLN02568 polyamine oxidase

Probab=99.40  E-value=4.1e-12  Score=140.18  Aligned_cols=160  Identities=13%  Similarity=0.049  Sum_probs=116.9

Q ss_pred             CCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHH-HHHHHHHhcC-c-----ccc--C-----CCCcEEEe
Q 036521           64 DETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAF-SILSFYRNHH-L-----LQL--F-----GRPQWLTV  129 (602)
Q Consensus        64 ~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~-~~l~~~~~~g-~-----~~~--~-----~~~~~~~~  129 (602)
                      +.|+++|++++ +++ +.+.+..|+..++++..+.......+. .+..+...++ +     +..  .     ..+..+.+
T Consensus       160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i  237 (539)
T PLN02568        160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI  237 (539)
T ss_pred             CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence            45999999984 555 667778899999998887755332222 2333332222 1     111  0     12346789


Q ss_pred             cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh-------hccCCCCHH
Q 036521          130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR-------ILGNQSTFE  202 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~-------ll~~~~~~~  202 (602)
                      .||+++|+++|++.|+  +.+|+++++|++|.+++++|.|++.+|+++.||+||+|+|+..+.+       .+.+++++.
T Consensus       238 ~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~  315 (539)
T PLN02568        238 AKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDF  315 (539)
T ss_pred             CCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHH
Confidence            9999999999999995  5679999999999999999999998888899999999999999885       244335555


Q ss_pred             HHhhccCccccce-eEEEecCCCCCC
Q 036521          203 EKRLLGAFQYVYS-DIFLHRDKNFMP  227 (602)
Q Consensus       203 ~~~~l~~~~y~~~-~~vl~~d~~l~p  227 (602)
                      ..+.+..+.|... .+++.++..+++
T Consensus       316 k~~Ai~~l~~g~~~Ki~l~f~~~fW~  341 (539)
T PLN02568        316 KTDAISRLGFGVVNKLFVELSPRPDG  341 (539)
T ss_pred             HHHHHHhcCCceeeEEEEEecCCCCC
Confidence            6778889888654 467778777654

>PLN02976 amine oxidase

Probab=99.38  E-value=1.1e-11  Score=143.85  Aligned_cols=208  Identities=11%  Similarity=0.073  Sum_probs=125.5

Q ss_pred             cEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEec----------CCeEEEEeCCCcEEecCEEEEecChHHHH--
Q 036521          125 QWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQY----------DEGRTEVRGDGFQGFYDGCIMAVHAPDAL--  192 (602)
Q Consensus       125 ~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~----------~~gv~v~~~~g~~~~ad~VI~A~p~~~a~--  192 (602)
                      ..+.+.||+++|+++|++.|     .|+|+++|++|...          +++|.|++.+|+++.||+||+|+|+..+.  
T Consensus       927 ~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976        927 AHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred             ceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence            56779999999999999988     59999999999884          46799999899889999999999999876  


Q ss_pred             hhccCC-CCHHHHhhccCccccce-eEEEecCCCCCCCCCC----c----------ccccccccCCCCCeEEEEeccc--
Q 036521          193 RILGNQ-STFEEKRLLGAFQYVYS-DIFLHRDKNFMPRNPA----A----------WSAWNFLGGLDGKACLTYWLNV--  254 (602)
Q Consensus       193 ~ll~~~-~~~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~~~----~----------w~s~n~~~~~~~~~~~t~~~~~--  254 (602)
                      .+...| +++.....+..+.|... -+++.++..+++....    .          |..|+...+....+.+.+..+.  
T Consensus      1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aA 1081 (1713)
T PLN02976       1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAA 1081 (1713)
T ss_pred             ccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhH
Confidence            344333 44445566788888654 5778888777664211    1          2223332222223444444332  


Q ss_pred             --cccCCCCCCCCCeE----EEcCCCCCCcc---eEEEEE---ccCCCC---ChhHHH-HHHHHHhhcC-CCCeEEeccc
Q 036521          255 --LQNIGDGETGLPFL----VTLNPDHTPNN---TLLKWS---TGHPVP---SVAASK-ASLELDHIQG-KRGIWFCEAY  317 (602)
Q Consensus       255 --~~~l~~~~~~~~v~----~tl~p~~~p~~---~l~r~~---~~~p~~---~~~~~~-~~~~l~~lqg-~~gl~~aG~~  317 (602)
                        ...++.++....++    ..++....|.+   .+.+|.   |+.=-|   .++... ....+.  ++ .++|||||..
T Consensus      1082 reiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LA--ePVggRLFFAGEA 1159 (1713)
T PLN02976       1082 IDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILG--RPVENCLFFAGEA 1159 (1713)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHh--CCCCCcEEEEehh
Confidence              11222211101111    11121111222   356773   211111   122111 111111  22 2459999997


Q ss_pred             c---CCCCChhHHHHHHHHHHHhcC
Q 036521          318 Q---GYGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       318 ~---g~g~~E~av~SG~~aA~~ll~  339 (602)
                      +   ..|++++|+.||.++|++|+.
T Consensus      1160 TS~~~pGTVHGAIeSG~RAA~eIL~ 1184 (1713)
T PLN02976       1160 TCKEHPDTVGGAMMSGLREAVRIID 1184 (1713)
T ss_pred             hhCCCcchHHHHHHHHHHHHHHHHH
Confidence            6   468899999999999999964

>PLN02676 polyamine oxidase

Probab=99.36  E-value=1.9e-11  Score=133.86  Aligned_cols=209  Identities=17%  Similarity=0.159  Sum_probs=125.8

Q ss_pred             cCCcHhHHHHHHHHHhcC------CCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh--hccCC-CC
Q 036521          130 RSRSHSYVNKVIALLESL------GCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR--ILGNQ-ST  200 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~------g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~--ll~~~-~~  200 (602)
                      ++|+++++++|++.+.+.      +++|+++++|++|..++++|.|++.+|+++.||+||+|+|+....+  +...| ++
T Consensus       220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP  299 (487)
T PLN02676        220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP  299 (487)
T ss_pred             CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC
Confidence            689999999999987432      2579999999999999999999999998899999999999998875  44433 44


Q ss_pred             HHHHhhccCccccce-eEEEecCCCCCCCCCC------------cccccccc-c-CCCCCeEEEEeccc----cccCCCC
Q 036521          201 FEEKRLLGAFQYVYS-DIFLHRDKNFMPRNPA------------AWSAWNFL-G-GLDGKACLTYWLNV----LQNIGDG  261 (602)
Q Consensus       201 ~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~~~------------~w~s~n~~-~-~~~~~~~~t~~~~~----~~~l~~~  261 (602)
                      +...+.+.+++|... -+++.++..+++....            .++.|... . .+.....+.+..+.    +..++++
T Consensus       300 ~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e  379 (487)
T PLN02676        300 DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDS  379 (487)
T ss_pred             HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHH
Confidence            445677888888654 5777888877765210            01112111 1 12222333322221    1122221


Q ss_pred             CCCCCeEE----EcCCCC-CCcc-eEEEEEc---cCC---CCChhHHHHHHHHHhh-cCCCCeEEeccccC---CCCChh
Q 036521          262 ETGLPFLV----TLNPDH-TPNN-TLLKWST---GHP---VPSVAASKASLELDHI-QGKRGIWFCEAYQG---YGFHED  325 (602)
Q Consensus       262 ~~~~~v~~----tl~p~~-~p~~-~l~r~~~---~~p---~~~~~~~~~~~~l~~l-qg~~gl~~aG~~~g---~g~~E~  325 (602)
                      +..+.+..    .+++.. .|.. ..+.|..   +.=   .+.++....  ....+ +..++|+|||..+.   .|++|+
T Consensus       380 ~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~--~~~~L~~P~gri~FAGe~ts~~~~g~~eG  457 (487)
T PLN02676        380 ETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRY--EFDQIRAPVGRVYFTGEHTSEKYNGYVHG  457 (487)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChh--HHHHHhCCCCceEEeccccccccccchHH
Confidence            11111111    112111 1222 2446631   111   111221111  11222 35679999999873   688999


Q ss_pred             HHHHHHHHHHHhcCC
Q 036521          326 GLKAGMIAAHGVLGK  340 (602)
Q Consensus       326 av~SG~~aA~~ll~~  340 (602)
                      |+.||.++|++|+..
T Consensus       458 A~~SG~RaA~~I~~~  472 (487)
T PLN02676        458 AYLAGIDTANDLLEC  472 (487)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999653

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.35  E-value=3.2e-12  Score=132.68  Aligned_cols=100  Identities=18%  Similarity=0.029  Sum_probs=83.7

Q ss_pred             CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCC-CCHH
Q 036521          124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQ-STFE  202 (602)
Q Consensus       124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~-~~~~  202 (602)
                      ++.+...|||+++++++++.|   +..|+++.+|.+|.++++||+|++.+.++..+|.||+|+|+..+..|-..| ++++
T Consensus       199 ~~~~~~~GGmd~la~Afa~ql---~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~  275 (450)
T COG1231         199 TQMLQRLGGMDQLAEAFAKQL---GTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAE  275 (450)
T ss_pred             chhhccCccHHHHHHHHHHHh---hceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHH
Confidence            344444499999999999999   889999999999999999999999884479999999999999999998755 5677


Q ss_pred             HHhhccCccccce-eEEEecCCCCC
Q 036521          203 EKRLLGAFQYVYS-DIFLHRDKNFM  226 (602)
Q Consensus       203 ~~~~l~~~~y~~~-~~vl~~d~~l~  226 (602)
                      .++....++|.++ -..+.++..++
T Consensus       276 ~~~a~~~~~y~~~~K~~v~f~rpFW  300 (450)
T COG1231         276 YKQAAKGVPYGSATKIGVAFSRPFW  300 (450)
T ss_pred             HHHHhcCcCcchheeeeeecCchhh
Confidence            7888888999775 45666666554

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.23  E-value=1.6e-11  Score=119.69  Aligned_cols=89  Identities=24%  Similarity=0.434  Sum_probs=74.6

Q ss_pred             chHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHH
Q 036521          490 SLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVV  569 (602)
Q Consensus       490 ~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la  569 (602)
                      ......++|+..||+.|++.+...+..                   |+  +.+++.+++++|++|||||||+|.+++.++
T Consensus        12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~-------------------Wr--~~~i~~~~~~~g~~vLDva~GTGd~a~~~~   70 (238)
T COG2226          12 KVQKVFDKVAKKYDLMNDLMSFGLHRL-------------------WR--RALISLLGIKPGDKVLDVACGTGDMALLLA   70 (238)
T ss_pred             HHHHHHHhhHHHHHhhcccccCcchHH-------------------HH--HHHHHhhCCCCCCEEEEecCCccHHHHHHH
Confidence            456778889999999998877665443                   33  367788888899999999999999999999


Q ss_pred             hcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          570 RQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       570 ~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.. .++|+|+|+|+.||+.|++++.+.|..
T Consensus        71 k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~  101 (238)
T COG2226          71 KSVGTGEVVGLDISESMLEVAREKLKKKGVQ  101 (238)
T ss_pred             HhcCCceEEEEECCHHHHHHHHHHhhccCcc
Confidence            983 479999999999999999999987654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.13  E-value=6.6e-11  Score=116.53  Aligned_cols=88  Identities=27%  Similarity=0.442  Sum_probs=44.6

Q ss_pred             hHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHh
Q 036521          491 LAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVR  570 (602)
Q Consensus       491 ~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~  570 (602)
                      .+...+.|+..||..|++.+...+..                   +++  .+++.+.+++|.+|||+|||+|.++..+++
T Consensus         9 v~~~Fd~ia~~YD~~n~~ls~g~~~~-------------------wr~--~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~   67 (233)
T PF01209_consen    9 VRKMFDRIAPRYDRMNDLLSFGQDRR-------------------WRR--KLIKLLGLRPGDRVLDVACGTGDVTRELAR   67 (233)
T ss_dssp             -----------------------------------------------S--HHHHHHT--S--EEEEET-TTSHHHHHHGG
T ss_pred             HHHHHHHHHHHhCCCccccCCcHHHH-------------------HHH--HHHhccCCCCCCEEEEeCCChHHHHHHHHH
Confidence            45567788889999988877766554                   222  566677888999999999999999999998


Q ss_pred             cc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          571 QT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       571 ~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.  +++|+|+|+|++|++.|+++++..+..
T Consensus        68 ~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~   98 (233)
T PF01209_consen   68 RVGPNGKVVGVDISPGMLEVARKKLKREGLQ   98 (233)
T ss_dssp             GSS---EEEEEES-HHHHHHHHHHHHHTT--
T ss_pred             HCCCccEEEEecCCHHHHHHHHHHHHhhCCC
Confidence            73  479999999999999999999987653

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.97  E-value=1.7e-09  Score=107.08  Aligned_cols=60  Identities=23%  Similarity=0.464  Sum_probs=53.0

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.++..+.+++|++|||||||+|.++..+++.  .+++|+|+|+|++|++.|+++++..++.
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~   96 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH   96 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            46778889999999999999999999999986  3579999999999999999998876653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.96  E-value=1.5e-09  Score=94.41  Aligned_cols=51  Identities=35%  Similarity=0.651  Sum_probs=46.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ||.+|||||||+|.+++.++++ .+++|+|||+|++|++.|++++.+.+..+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~   52 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSD   52 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTT
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence            6789999999999999999994 79999999999999999999997776654

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.89  E-value=3.8e-09  Score=106.32  Aligned_cols=54  Identities=26%  Similarity=0.465  Sum_probs=46.9

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+++.++++++++|||+|||+|.++..++++.+  ++|+|+|+|++|++.|+++..
T Consensus        64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~  119 (261)
T PLN02233         64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQE  119 (261)
T ss_pred             HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence            345667888999999999999999999998643  699999999999999998764

>PRK05785 hypothetical protein; Provisional

Probab=98.85  E-value=4.7e-09  Score=103.29  Aligned_cols=43  Identities=14%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      ++.+|||||||+|.++..++++.+.+|+|+|+|++|++.|+++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc
Confidence            4679999999999999999986568999999999999999876

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.80  E-value=1.5e-08  Score=100.15  Aligned_cols=104  Identities=16%  Similarity=0.319  Sum_probs=68.1

Q ss_pred             CchHHHHHhhHhhhccch-HHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHc---cCCCCCeEEEEecCchHH
Q 036521          489 NSLAQARRNISYHYDLSN-ELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKA---RVSKGHGVLEIGCGWGTF  564 (602)
Q Consensus       489 ~~~~~~~~~i~~~Yd~~~-~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l---~l~~g~~vLDiGcG~G~~  564 (602)
                      +.....+..|..+||... +.++...+.      +........+........+.+++.+   +..++.+|||||||+|.+
T Consensus         4 ~~~~~~~~~v~~~~~~~~~~~w~~~y~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~   77 (230)
T PRK07580          4 FNYLEHKSEVRTYFNRTGFDRWARIYSD------APVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSL   77 (230)
T ss_pred             hhhhhchhhhhHHHhhhccchHHHhhCc------CchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHH
Confidence            344566778888888532 333332222      2221111122122233333444444   346788999999999999


Q ss_pred             HHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          565 AIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       565 ~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +..++++ +++|+|+|+|++|++.|+++....++.
T Consensus        78 ~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~  111 (230)
T PRK07580         78 SIPLARR-GAKVVASDISPQMVEEARERAPEAGLA  111 (230)
T ss_pred             HHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc
Confidence            9999985 789999999999999999999887763

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.79  E-value=1.8e-08  Score=96.69  Aligned_cols=89  Identities=18%  Similarity=0.353  Sum_probs=75.1

Q ss_pred             HHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc
Q 036521          492 AQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ  571 (602)
Q Consensus       492 ~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~  571 (602)
                      ...+++|+..||..||..++....-       |              .+....+++..+|++|||++||+|.++..+.++
T Consensus        63 ~~vF~~vA~~YD~mND~mSlGiHRl-------W--------------Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~  121 (296)
T KOG1540|consen   63 HHVFESVAKKYDIMNDAMSLGIHRL-------W--------------KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRH  121 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhHH-------H--------------HHHhhhccCCCCCCeEEEecCCcchhHHHHHHh
Confidence            5567889999999999988765332       2              346788999999999999999999999999887


Q ss_pred             -cC------CEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          572 -TG------CNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       572 -~g------~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                       ..      .+|+++|||++||+.+++|+++.++.+.
T Consensus       122 v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~  158 (296)
T KOG1540|consen  122 VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKAS  158 (296)
T ss_pred             hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC
Confidence             33      6899999999999999999988887654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.79  E-value=2.8e-08  Score=102.08  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=63.5

Q ss_pred             HHHHHhhHhhhccch-HHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccC---CCCCeEEEEecCchHHHHH
Q 036521          492 AQARRNISYHYDLSN-ELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV---SKGHGVLEIGCGWGTFAIE  567 (602)
Q Consensus       492 ~~~~~~i~~~Yd~~~-~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l---~~g~~vLDiGcG~G~~~~~  567 (602)
                      ...++.|+++||... +-+...++.........+.. ....    ...++.+++.+..   .++.+|||||||+|.+++.
T Consensus        87 ~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~-~~~~----~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~  161 (315)
T PLN02585         87 GDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDI-RLGH----AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIP  161 (315)
T ss_pred             HHHHHHHHHHhcccchhhHHHhcCCccccCceeeec-ccCh----HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHH
Confidence            456678888888752 22333333322221111111 0011    1122333444332   3578999999999999999


Q ss_pred             HHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          568 VVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       568 la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ++++ |++|+|+|+|++|++.|+++++..
T Consensus       162 la~~-g~~V~gvD~S~~ml~~A~~~~~~~  189 (315)
T PLN02585        162 LALE-GAIVSASDISAAMVAEAERRAKEA  189 (315)
T ss_pred             HHHC-CCEEEEEECCHHHHHHHHHHHHhc
Confidence            9996 899999999999999999998765

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.78  E-value=2.9e-08  Score=87.61  Aligned_cols=63  Identities=25%  Similarity=0.403  Sum_probs=54.9

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....+++.+.+.++++|||+|||+|.++..++++ .+++|+|+|+|+.+++.++++++..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~   69 (124)
T TIGR02469         6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS   69 (124)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence            34456788888888999999999999999999987 4589999999999999999999887664

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.78  E-value=8.7e-09  Score=98.92  Aligned_cols=50  Identities=32%  Similarity=0.591  Sum_probs=47.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      -+|.+|||||||.|.++..+|+. |++|||+|+|+++++.|+.++.+.|+.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~  107 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVN  107 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhcccc
Confidence            37889999999999999999996 999999999999999999999999886

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.77  E-value=1.3e-07  Score=104.32  Aligned_cols=144  Identities=13%  Similarity=0.106  Sum_probs=95.5

Q ss_pred             CCCHHHHHHhcC-CCHHHHHHHHHHHHhhhcC-CChhhHHhhhHHHH---HHHHHhcCccccCCCCcEEEecCCcHhHHH
Q 036521           64 DETLGQFIKSRG-YSELFQKAYLVPICGSIWS-CPSEGIMSFSAFSI---LSFYRNHHLLQLFGRPQWLTVRSRSHSYVN  138 (602)
Q Consensus        64 ~~s~~~~l~~~~-~~~~~~~~~~~pl~~~v~~-~~~~~~~~~p~~~~---l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~  138 (602)
                      ..|+.+|+++++ +.....+.++...+ ..++ .++.+.   ++.+.   +.+..       ...+ .+.++||+++|++
T Consensus       169 ~~s~~~~l~~~~~~~~~~lr~~l~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~G-~~~~~GG~~~l~~  236 (492)
T TIGR02733       169 LLTVADLLRLCGLGDDRRLRRFLDLQL-KLYSQEDADET---AALYGATVLQMAQ-------APHG-LWHLHGSMQTLSD  236 (492)
T ss_pred             hhhHHHHHHHhCCCccHHHHHHHHHHH-hhhccCChhhh---hHHHHHHHhhccc-------cCCC-ceeecCcHHHHHH
Confidence            589999999864 33444445554333 2233 334443   33332   22211       1112 3458999999999


Q ss_pred             HHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCC-----cEEecCEEEEecChHHHHhhccC-CCCHHHHhhccCcc
Q 036521          139 KVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDG-----FQGFYDGCIMAVHAPDALRILGN-QSTFEEKRLLGAFQ  211 (602)
Q Consensus       139 ~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g-----~~~~ad~VI~A~p~~~a~~ll~~-~~~~~~~~~l~~~~  211 (602)
                      +|++.++++|++|+++++|++|..+++++ .|...+|     +++.||+||+++|+..+.++++. ...+...+.+.+++
T Consensus       237 aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  316 (492)
T TIGR02733       237 RLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLP  316 (492)
T ss_pred             HHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCC
Confidence            99999988899999999999999876642 2222222     46889999999999999999874 23455666788888


Q ss_pred             ccceeEEE
Q 036521          212 YVYSDIFL  219 (602)
Q Consensus       212 y~~~~~vl  219 (602)
                      +++...++
T Consensus       317 ~s~~~~~v  324 (492)
T TIGR02733       317 EPSGAFVF  324 (492)
T ss_pred             CCCceEEE
Confidence            87754333

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.76  E-value=2e-08  Score=96.79  Aligned_cols=58  Identities=21%  Similarity=0.297  Sum_probs=51.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+++.+...++.+|||+|||+|..+.++|++ |++|+|+|+|++|++.++++++..++.
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~   78 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD   78 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            4556666777889999999999999999996 899999999999999999999888764

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.75  E-value=4.3e-08  Score=98.52  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++.++.+++.+. .++.+|||||||+|.++..++++ |++|+|+|+|++|++.|++++++.|+.
T Consensus        31 ~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~   92 (255)
T PRK11036         31 WQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVS   92 (255)
T ss_pred             HHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc
Confidence            445567787776 45679999999999999999996 899999999999999999999988764

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.75  E-value=3.4e-08  Score=93.89  Aligned_cols=52  Identities=21%  Similarity=0.315  Sum_probs=47.3

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++++.+|||||||+|.+++.++++ .+++|+|||+|++|++.|++++++.+++
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~   95 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK   95 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC
Confidence            456889999999999999999875 5789999999999999999999999875

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.75  E-value=2.3e-08  Score=96.21  Aligned_cols=58  Identities=14%  Similarity=0.181  Sum_probs=50.3

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+++.+.+.++.+|||+|||+|.+++++|++ |++|+|+|+|++|++.++++++..|++
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~   78 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP   78 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence            3455666656679999999999999999996 899999999999999999999887764

Part of a tellurite-reducing operon tehA and tehB

>TIGR02730 carot_isom carotene isomerase

Probab=98.68  E-value=5e-06  Score=91.84  Aligned_cols=141  Identities=12%  Similarity=0.094  Sum_probs=89.5

Q ss_pred             CCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCC-hhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHH
Q 036521           64 DETLGQFIKSRGYSELFQKAYLVPICGSIWSCP-SEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIA  142 (602)
Q Consensus        64 ~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~-~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~  142 (602)
                      ..|+.+|++++.-++.++ .++...+ ..++.. +.+.   |+.+.+..+..      .....++...||++.++++|++
T Consensus       169 ~~s~~~~~~~~~~~~~l~-~~l~~~~-~~~~~~p~~~~---p~~~~~~~~~~------~~~~g~~~~~gG~~~l~~~L~~  237 (493)
T TIGR02730       169 PQNAGDIARRYIRDPGLL-KFIDIEC-FCWSVVPADQT---PMINAGMVFSD------RHYGGINYPKGGVGQIAESLVK  237 (493)
T ss_pred             hccHHHHHHHhcCCHHHH-HHHHHHH-HhccCCCcccc---hhhhHHHhhcc------cccceEecCCChHHHHHHHHHH
Confidence            378888998875555544 3443222 122322 2232   33322222211      1112345678999999999999


Q ss_pred             HHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecChHHHH-hhccCC-CCHHHHhhccCccccce
Q 036521          143 LLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHAPDAL-RILGNQ-STFEEKRLLGAFQYVYS  215 (602)
Q Consensus       143 ~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~~~a~-~ll~~~-~~~~~~~~l~~~~y~~~  215 (602)
                      .++++|++|+++++|++|..++++ +.|.+.+|+++.+|+||+++.+..+. +|++.. ..+.....+.+++++..
T Consensus       238 ~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s  313 (493)
T TIGR02730       238 GLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPS  313 (493)
T ss_pred             HHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCc
Confidence            999999999999999999877654 45667788789999999999666554 577632 23334444456665543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.67  E-value=5.8e-08  Score=91.86  Aligned_cols=57  Identities=28%  Similarity=0.439  Sum_probs=46.8

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +++.+..-+..++||+|||.|..+++||++ |..|+++|+|+..++.+++.+++.+++
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~   78 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD   78 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce
Confidence            444555545569999999999999999996 999999999999999999999998886

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.66  E-value=8.7e-08  Score=92.95  Aligned_cols=62  Identities=19%  Similarity=0.215  Sum_probs=54.9

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ....+++.+.++++++|||||||+|..+..+++..  +.+|+|+|+|+++++.|+++++..++.
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~  123 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW  123 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            45577888889999999999999999999998863  469999999999999999999988765

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.66  E-value=8e-08  Score=93.96  Aligned_cols=63  Identities=25%  Similarity=0.252  Sum_probs=55.6

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....+++.+.+++|++|||||||+|.++..+++..  ..+|+|+|+++++++.|++++++.|++
T Consensus        64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~  128 (215)
T TIGR00080        64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD  128 (215)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC
Confidence            345678888899999999999999999999999873  346999999999999999999998874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.66  E-value=9.5e-08  Score=92.04  Aligned_cols=63  Identities=19%  Similarity=0.249  Sum_probs=54.7

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....+++.+.++++++|||+|||+|.+++.+++. .+++|+|||+|+++++.|++++++.+++
T Consensus        27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~   90 (196)
T PRK07402         27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK   90 (196)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            33345788888889999999999999999999875 4689999999999999999999888764

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.65  E-value=5.7e-08  Score=97.27  Aligned_cols=83  Identities=20%  Similarity=0.359  Sum_probs=63.1

Q ss_pred             hHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHH
Q 036521          506 NELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAE  584 (602)
Q Consensus       506 ~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~  584 (602)
                      ++.+...+++.|.|.++.+...        ...++.+ ... +.++++|||||||+|.+++.+++. |+ +|+|+|+|+.
T Consensus        85 ~~~~~i~i~p~~afgtg~h~tt--------~~~l~~l-~~~-~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~  153 (250)
T PRK00517         85 PDEINIELDPGMAFGTGTHPTT--------RLCLEAL-EKL-VLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQ  153 (250)
T ss_pred             CCeEEEEECCCCccCCCCCHHH--------HHHHHHH-Hhh-cCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHH
Confidence            4455678899999988876421        1122222 222 457899999999999999988775 55 5999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 036521          585 QLKYAEMKVNEAGLQ  599 (602)
Q Consensus       585 ~l~~a~~~~~~~gl~  599 (602)
                      +++.|+++++.+++.
T Consensus       154 ~l~~A~~n~~~~~~~  168 (250)
T PRK00517        154 AVEAARENAELNGVE  168 (250)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999999998874

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.65  E-value=1.1e-07  Score=90.98  Aligned_cols=61  Identities=20%  Similarity=0.367  Sum_probs=53.4

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...+++.+.+.++.+|||||||+|.+++.++++ .+++|+|+|+|+++++.|+++++..+++
T Consensus        20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~   81 (187)
T PRK08287         20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG   81 (187)
T ss_pred             HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            345677888889999999999999999999987 4579999999999999999999887764

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.64  E-value=9.5e-08  Score=95.81  Aligned_cols=59  Identities=25%  Similarity=0.235  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          535 QMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       535 q~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      |....+.+++.+...++.+|||||||+|.++..++++ +++|+|+|+|++|++.|+++..
T Consensus        27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~   85 (251)
T PRK10258         27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA   85 (251)
T ss_pred             HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC
Confidence            4556667788887667789999999999999999885 8999999999999999998753

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.64  E-value=1.3e-07  Score=92.76  Aligned_cols=62  Identities=21%  Similarity=0.390  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHcc--CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          536 MRKHSLQIEKAR--VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       536 ~~~~~~l~~~l~--l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ....+.+++.+.  +.++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++....+.
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~  102 (219)
T TIGR02021        39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDV  102 (219)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC
Confidence            344556666665  567899999999999999999985 88999999999999999999987664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.64  E-value=1e-07  Score=96.15  Aligned_cols=81  Identities=14%  Similarity=0.314  Sum_probs=62.6

Q ss_pred             hc-cchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEc
Q 036521          502 YD-LSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGIT  580 (602)
Q Consensus       502 Yd-~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid  580 (602)
                      |+ .+-..|+..+++....      .  ..+     .....+++.++++++.+|||||||+|..+..+++.++++|+|+|
T Consensus        16 y~~~~~~~~e~~~g~~~~~------~--gg~-----~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD   82 (263)
T PTZ00098         16 YSDEGIKAYEFIFGEDYIS------S--GGI-----EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVD   82 (263)
T ss_pred             cccccchhHHHHhCCCCCC------C--Cch-----HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEE
Confidence            44 3446787777755221      1  112     22346788999999999999999999999999887789999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 036521          581 LSAEQLKYAEMKVNE  595 (602)
Q Consensus       581 ~S~~~l~~a~~~~~~  595 (602)
                      +|++|++.|+++...
T Consensus        83 ~s~~~~~~a~~~~~~   97 (263)
T PTZ00098         83 ICEKMVNIAKLRNSD   97 (263)
T ss_pred             CCHHHHHHHHHHcCc
Confidence            999999999998653

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.64  E-value=6e-08  Score=98.28  Aligned_cols=81  Identities=23%  Similarity=0.379  Sum_probs=63.4

Q ss_pred             HhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHH
Q 036521          510 ALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKY  588 (602)
Q Consensus       510 ~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~  588 (602)
                      ...+++.|.|.+|..++         .++.-.+++++ ..+|++|||+|||+|-+++.+++. |+ +|+|+|+++..++.
T Consensus       131 ~I~idPg~AFGTG~H~T---------T~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~  199 (295)
T PF06325_consen  131 VIEIDPGMAFGTGHHPT---------TRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEA  199 (295)
T ss_dssp             EEEESTTSSS-SSHCHH---------HHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHH
T ss_pred             EEEECCCCcccCCCCHH---------HHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHH
Confidence            45689999988876643         33434445554 568899999999999999998885 76 79999999999999


Q ss_pred             HHHHHHHcCCCCC
Q 036521          589 AEMKVNEAGLQVT  601 (602)
Q Consensus       589 a~~~~~~~gl~~~  601 (602)
                      |+++++.+|++++
T Consensus       200 a~~N~~~N~~~~~  212 (295)
T PF06325_consen  200 ARENAELNGVEDR  212 (295)
T ss_dssp             HHHHHHHTT-TTC
T ss_pred             HHHHHHHcCCCee
Confidence            9999999999864

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.63  E-value=7.2e-08  Score=88.83  Aligned_cols=51  Identities=29%  Similarity=0.710  Sum_probs=45.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.+.+|||+|||+|.++..++++  .+.+++|||+|++|++.|+++++..+++
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~   54 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD   54 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc
Confidence            46789999999999999999953  4789999999999999999999998876

...

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.62  E-value=1.2e-07  Score=92.38  Aligned_cols=64  Identities=23%  Similarity=0.257  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      -.....+++.+.+++|++|||||||+|.++..+++..  +++|+|+|+++++++.|+++++..|++
T Consensus        62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~  127 (212)
T PRK13942         62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD  127 (212)
T ss_pred             HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            3455678889999999999999999999999998863  369999999999999999999988764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.62  E-value=1.7e-07  Score=96.58  Aligned_cols=48  Identities=25%  Similarity=0.490  Sum_probs=43.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      .+|.+|||||||+|.++..+++ .|++|+|||+|++|++.|+++++..+
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~  177 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDP  177 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence            4678999999999999999998 49999999999999999998876544

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.59  E-value=1.7e-07  Score=95.71  Aligned_cols=83  Identities=14%  Similarity=0.283  Sum_probs=63.7

Q ss_pred             HHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHH
Q 036521          508 LFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLK  587 (602)
Q Consensus       508 ~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~  587 (602)
                      -....+++.|.+.++....         .++...+++.. .++|++|||+|||+|.+++.+++....+|+|+|+|+.+++
T Consensus       127 ~~~i~ldpg~aFgtG~h~t---------t~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~  196 (288)
T TIGR00406       127 ALIIMLDPGLAFGTGTHPT---------TSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVE  196 (288)
T ss_pred             cEEEEECCCCcccCCCCHH---------HHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHH
Confidence            3446788999888776642         22222334443 3578999999999999999988853358999999999999


Q ss_pred             HHHHHHHHcCCCC
Q 036521          588 YAEMKVNEAGLQV  600 (602)
Q Consensus       588 ~a~~~~~~~gl~~  600 (602)
                      .|++++..+++++
T Consensus       197 ~a~~n~~~n~~~~  209 (288)
T TIGR00406       197 SARKNAELNQVSD  209 (288)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999888764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.57  E-value=2.1e-07  Score=88.18  Aligned_cols=50  Identities=22%  Similarity=0.314  Sum_probs=45.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +|++|||||||+|.+++.++.. .+++|+|||+|++|++.+++++++.+++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~   92 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN   92 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC
Confidence            4789999999999999998876 3579999999999999999999988874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.57  E-value=2.3e-07  Score=92.77  Aligned_cols=52  Identities=21%  Similarity=0.432  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++++.+|||||||+|..+..+++.   .+++|+|||+|++|++.|++++...++.
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~  108 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP  108 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            467889999999999999988873   5789999999999999999999887664

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.56  E-value=5.6e-08  Score=93.97  Aligned_cols=44  Identities=30%  Similarity=0.542  Sum_probs=40.8

Q ss_pred             CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      |++|||+|||+|-++..||+ .|+.|+|||+|+.|++.|++....
T Consensus        90 g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~  133 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKM  133 (282)
T ss_pred             CceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhc
Confidence            58899999999999999999 699999999999999999998543

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.55  E-value=1.7e-07  Score=94.45  Aligned_cols=61  Identities=21%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521          534 AQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       534 aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .|.+..+.+++.+.++++.+|||||||+|.++..++++ .+++|+|||+|+.|++.|+++..
T Consensus        15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~   76 (258)
T PRK01683         15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP   76 (258)
T ss_pred             HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC
Confidence            34555667888888899999999999999999999987 46899999999999999998753

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.55  E-value=1.5e-07  Score=94.63  Aligned_cols=57  Identities=19%  Similarity=0.335  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+....+++.++.+++.+|||||||+|.++..++++ .+++|+|+|+|+.|++.|+++
T Consensus        15 ~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~   72 (255)
T PRK14103         15 GRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER   72 (255)
T ss_pred             hCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc
Confidence            344557788888889999999999999999999987 478999999999999999764

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.54  E-value=1.9e-07  Score=95.50  Aligned_cols=49  Identities=20%  Similarity=0.404  Sum_probs=44.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++.+|||||||+|..+++++++ |++|+|+|+|+++++.++++++..++.
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~  168 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLN  168 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCc
Confidence            3449999999999999999996 899999999999999999999888763

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.53  E-value=3.5e-07  Score=88.26  Aligned_cols=59  Identities=22%  Similarity=0.428  Sum_probs=52.4

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+.++++.++++|||+|||+|.+++.+++.  .+.+|+++|+|+++++.|+++++..|+.
T Consensus        31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~   91 (198)
T PRK00377         31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL   91 (198)
T ss_pred             HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            4567889999999999999999999998875  2469999999999999999999988853

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.52  E-value=3.4e-07  Score=88.54  Aligned_cols=63  Identities=16%  Similarity=0.228  Sum_probs=49.4

Q ss_pred             ccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHH
Q 036521          529 EDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       529 ~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ..+..+....+..++..  +.++.+|||||||+|..+..+++. .+++|+|||+|++|++.|+++.
T Consensus        24 ~~~~~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~   87 (204)
T TIGR03587        24 QSLVAAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL   87 (204)
T ss_pred             HHHHHHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence            34444444555555554  346779999999999999999886 4789999999999999999865

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.50  E-value=5e-07  Score=83.92  Aligned_cols=64  Identities=23%  Similarity=0.329  Sum_probs=56.9

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ......+.+|.+++|++++|||||+|.+++.+|.. +.++|++||-+++.++..++++++.|+++
T Consensus        21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n   85 (187)
T COG2242          21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN   85 (187)
T ss_pred             HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc
Confidence            34446789999999999999999999999999954 57899999999999999999999998653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.47  E-value=4.4e-07  Score=99.68  Aligned_cols=56  Identities=23%  Similarity=0.403  Sum_probs=50.8

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+.+++.+.++++.+|||||||+|..++.++++.+++|+|+|+|++|++.|++++.
T Consensus       255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~  310 (475)
T PLN02336        255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI  310 (475)
T ss_pred             HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh
Confidence            45678888888899999999999999999998778999999999999999998875

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.46  E-value=4.3e-07  Score=98.63  Aligned_cols=82  Identities=20%  Similarity=0.334  Sum_probs=64.2

Q ss_pred             CCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          514 DESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       514 ~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      +-.+.++.+-|-+.....   ....++.+++.+.+.++++|||+|||+|.+++.+|++ +.+|+|+|+|++|++.|++++
T Consensus       264 g~~f~~~~~~F~q~n~~~---~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~  339 (443)
T PRK13168        264 GLRLAFSPRDFIQVNAQV---NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENA  339 (443)
T ss_pred             CeEEEECCCCeEEcCHHH---HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHH
Confidence            334555555553222221   2456677788888889999999999999999999986 689999999999999999999


Q ss_pred             HHcCCC
Q 036521          594 NEAGLQ  599 (602)
Q Consensus       594 ~~~gl~  599 (602)
                      +..|++
T Consensus       340 ~~~~~~  345 (443)
T PRK13168        340 RRNGLD  345 (443)
T ss_pred             HHcCCC
Confidence            988874

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.45  E-value=5.5e-07  Score=89.23  Aligned_cols=59  Identities=27%  Similarity=0.455  Sum_probs=50.8

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..+++.+...++.+|||||||+|.++..+++..  .++|+|+|+|+++++.+++++...++
T Consensus        41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~  101 (239)
T PRK00216         41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL  101 (239)
T ss_pred             HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc
Confidence            456677777788999999999999999999875  38999999999999999999876544

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.43  E-value=5.5e-07  Score=84.53  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=50.4

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      +.+++.+++.++++|||||||+|.++..++++ +++|+++|+|+.+++.+++++..
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~   57 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA   57 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc
Confidence            46788888999999999999999999999997 88999999999999999998753

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.42  E-value=5e-07  Score=91.57  Aligned_cols=57  Identities=18%  Similarity=0.271  Sum_probs=51.0

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ...+.+++.+++.++++|||||||+|.++..++++ +.+|+|+|+|++|++.++++..
T Consensus        29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~   85 (272)
T PRK00274         29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFA   85 (272)
T ss_pred             HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhc
Confidence            44567888889999999999999999999999997 6699999999999999998764

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=9.1e-07  Score=88.88  Aligned_cols=78  Identities=22%  Similarity=0.428  Sum_probs=63.3

Q ss_pred             hhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHH
Q 036521          511 LFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYA  589 (602)
Q Consensus       511 ~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a  589 (602)
                      .-+|+.|.|..|+..+         ..+.-..+++.. ++|++|||+|||+|-+++.+++. |+ +|+|+|+.|..++.|
T Consensus       133 i~lDPGlAFGTG~HpT---------T~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa  201 (300)
T COG2264         133 IELDPGLAFGTGTHPT---------TSLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAA  201 (300)
T ss_pred             EEEccccccCCCCChh---------HHHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHH
Confidence            4678888888777754         233334455543 48899999999999999998885 76 599999999999999


Q ss_pred             HHHHHHcCCC
Q 036521          590 EMKVNEAGLQ  599 (602)
Q Consensus       590 ~~~~~~~gl~  599 (602)
                      +++++.++++
T Consensus       202 ~eNa~~N~v~  211 (300)
T COG2264         202 RENARLNGVE  211 (300)
T ss_pred             HHHHHHcCCc
Confidence            9999999987

>TIGR00740 methyltransferase, putative

Probab=98.40  E-value=5.8e-07  Score=89.40  Aligned_cols=51  Identities=18%  Similarity=0.324  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +.++.+|||||||+|..+..++++   .+++|+|+|+|++|++.|+++++..+.
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~  104 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS  104 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC
Confidence            357889999999999999999885   478999999999999999999887654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.40  E-value=3.6e-07  Score=85.86  Aligned_cols=61  Identities=21%  Similarity=0.314  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHccCCC--CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          532 KVAQMRKHSLQIEKARVSK--GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       532 ~~aq~~~~~~l~~~l~l~~--g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ..-|.++.+..++.+.+++  ..-|||||||+|-.+..+... |...+|+|||+.|++.|.++-
T Consensus        30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e   92 (270)
T KOG1541|consen   30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERE   92 (270)
T ss_pred             eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhh
Confidence            3456777788889988877  557999999999999988884 899999999999999999643

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.40  E-value=4.5e-07  Score=85.06  Aligned_cols=60  Identities=23%  Similarity=0.361  Sum_probs=52.6

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      |-...++....+.+-.+|.|+|||.|..+..++++ .++.++|||-|++|++.|+++..+.
T Consensus        17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~   77 (257)
T COG4106          17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDA   77 (257)
T ss_pred             CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCC
Confidence            44456788888888889999999999999999999 7899999999999999998886544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.40  E-value=9.6e-07  Score=86.15  Aligned_cols=61  Identities=21%  Similarity=0.163  Sum_probs=53.7

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ....+++.+.++++++|||||||+|.++..+++. ..+|+++|+|+++++.|++++++.+++
T Consensus        66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~  126 (212)
T PRK00312         66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH  126 (212)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC
Confidence            3446777888999999999999999999988886 569999999999999999999887764

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.39  E-value=1e-06  Score=90.73  Aligned_cols=63  Identities=29%  Similarity=0.312  Sum_probs=55.0

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....+++.++++++++|||||||+|.++..+++..+  .+|+|||+|+++++.|+++++..|++
T Consensus        67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~  131 (322)
T PRK13943         67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE  131 (322)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            3455678888899999999999999999999998743  47999999999999999999988764

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.39  E-value=1e-06  Score=89.76  Aligned_cols=62  Identities=19%  Similarity=0.236  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ...++.+++.+++.++++|||||||+|.++..++++ +.+|+++|+++.+++.+++++...++
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~   83 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPL   83 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCC
Confidence            456678899999999999999999999999999986 78999999999999999999877653

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.38  E-value=7.1e-06  Score=88.56  Aligned_cols=119  Identities=11%  Similarity=-0.074  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCh-hhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHH
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPS-EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVI  141 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~-~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la  141 (602)
                      +.+|+.+|++++++++..++.+.. +++.....+. +.........+..|...-+..  ...+..++ .+|+++|+++++
T Consensus       164 d~~T~~d~L~~~~ls~~~~d~i~~-~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~--g~~p~~yp-~gG~g~L~qal~  239 (443)
T PTZ00363        164 KTMTMAQLYKKFGLEDNTIDFVGH-AVALYTNDDYLNKPAIETVMRIKLYMDSLSRY--GKSPFIYP-LYGLGGLPQAFS  239 (443)
T ss_pred             ccCCHHHHHHHhCCCHHHHHHHHH-HHHhhcccccccCCHHHHHHHHHHHHHHHhhc--cCCcceee-CCCHHHHHHHHH
Confidence            468999999999999987764432 2222211110 111112233333344321111  12344555 799999999999


Q ss_pred             HHHhcCCCeEEeCCceeEEEecCCe--EEEEeCCCcEEecCEEEEe
Q 036521          142 ALLESLGCQIKTGCEVCSVLQYDEG--RTEVRGDGFQGFYDGCIMA  185 (602)
Q Consensus       142 ~~l~~~g~~v~l~t~V~~i~~~~~g--v~v~~~~g~~~~ad~VI~A  185 (602)
                      +.+...|++++++++|++|..++++  +.|++.+|+++.|++||+.
T Consensus       240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~  285 (443)
T PTZ00363        240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICD  285 (443)
T ss_pred             HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEEC
Confidence            8877779999999999999887654  5688888988999999885

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.37  E-value=9.2e-07  Score=86.65  Aligned_cols=81  Identities=30%  Similarity=0.445  Sum_probs=63.3

Q ss_pred             HHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc
Q 036521          493 QARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT  572 (602)
Q Consensus       493 ~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~  572 (602)
                      ..++.|+++||..+..+..+..                     ......+++.+...++.+|||+|||+|..+..++++.
T Consensus         3 ~~~~~~~~~y~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~   61 (223)
T TIGR01934         3 EMFDRIAPKYDLLNDLLSFGLH---------------------RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA   61 (223)
T ss_pred             hHHHHHHhhhhHHHHHHhcccH---------------------HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhc
Confidence            4567888999988777654321                     1222355666666788999999999999999999875


Q ss_pred             C--CEEEEEcCCHHHHHHHHHHHH
Q 036521          573 G--CNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       573 g--~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +  ++++|+|+|+.+++.++++..
T Consensus        62 ~~~~~~~~iD~~~~~~~~~~~~~~   85 (223)
T TIGR01934        62 PDRGKVTGVDFSSEMLEVAKKKSE   85 (223)
T ss_pred             CCCceEEEEECCHHHHHHHHHHhc
Confidence            4  599999999999999998864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=1.2e-06  Score=83.31  Aligned_cols=63  Identities=22%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+...+++.|.+++|++|||||||+|..+..+|+- ..+|++|+..++..+.|+++.+..|+.+
T Consensus        59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~n  121 (209)
T COG2518          59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYEN  121 (209)
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence            35568899999999999999999999999999996 5599999999999999999999999853

>PRK14967 putative methyltransferase; Provisional

Probab=98.37  E-value=1.1e-06  Score=86.40  Aligned_cols=59  Identities=20%  Similarity=0.361  Sum_probs=51.2

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +...+..+.++++++|||+|||+|.+++.+++. ++ +|+|+|+|+++++.|+++++..++
T Consensus        25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~   84 (223)
T PRK14967         25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV   84 (223)
T ss_pred             HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence            334566677888999999999999999999986 55 999999999999999999987765

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.37  E-value=1.7e-06  Score=81.22  Aligned_cols=73  Identities=21%  Similarity=0.412  Sum_probs=55.2

Q ss_pred             ccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          521 CPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       521 ~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+.|..  ..++.+..-..+.+...    ++.+|||+|||+|.+++.++++ ...+|+++|+|+.+++.|+++++..+++
T Consensus         8 ~gvFs~--~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~   81 (170)
T PF05175_consen    8 PGVFSP--PRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE   81 (170)
T ss_dssp             TTSTTT--TSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT
T ss_pred             CCeeCC--CCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence            455532  33444444333333333    6779999999999999999997 3447999999999999999999999876

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.37  E-value=7.1e-07  Score=92.37  Aligned_cols=55  Identities=25%  Similarity=0.306  Sum_probs=46.1

Q ss_pred             HHHHHHccC-CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521          540 SLQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       540 ~~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +.+++.+.+ .++.+|||||||+|.++..++++ .+.+|+|+|+|++|++.|+++..
T Consensus       102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~  158 (340)
T PLN02490        102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP  158 (340)
T ss_pred             HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh
Confidence            345666655 46789999999999999998886 35799999999999999999764

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.37  E-value=1.2e-06  Score=90.79  Aligned_cols=61  Identities=26%  Similarity=0.394  Sum_probs=51.4

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .++.+.+.+...++.+|||+|||+|.+++.+|++ +++|+|+|+|+++++.|+++++..|++
T Consensus       161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~  221 (315)
T PRK03522        161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLT  221 (315)
T ss_pred             HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            4444445554345689999999999999999995 899999999999999999999998874

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.37  E-value=6.6e-07  Score=81.63  Aligned_cols=68  Identities=22%  Similarity=0.308  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHcc---CCCC-CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          533 VAQMRKHSLQIEKAR---VSKG-HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       533 ~aq~~~~~~l~~~l~---l~~g-~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|++++++++.+...   +.+. .+|||+|||.|.+...|+++ ...+.+|||.|++.++.|+..++..++++
T Consensus        46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n  118 (227)
T KOG1271|consen   46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN  118 (227)
T ss_pred             cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc
Confidence            577888888888776   4444 49999999999999999997 33469999999999999999999999886

>PRK14968 putative methyltransferase; Provisional

Probab=98.36  E-value=1.3e-06  Score=83.12  Aligned_cols=59  Identities=27%  Similarity=0.403  Sum_probs=51.4

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+++.+...++.+|||+|||.|.++..++++ +++|+|+|+|+++++.++++++..++.+
T Consensus        14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~   72 (188)
T PRK14968         14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRN   72 (188)
T ss_pred             HHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            3445555578889999999999999999997 8999999999999999999998887754

>TIGR03438 probable methyltransferase

Probab=98.35  E-value=1.6e-06  Score=89.26  Aligned_cols=88  Identities=20%  Similarity=0.286  Sum_probs=59.7

Q ss_pred             hhhc-cchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEE
Q 036521          500 YHYD-LSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNY  576 (602)
Q Consensus       500 ~~Yd-~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v  576 (602)
                      -+|| .+.+.|+.+..-     +.||....+  .+--....+.|++.+  +++.+|||+|||+|..+..+++..  +.+|
T Consensus        21 ~~yd~~G~~lf~~i~~~-----peYy~tr~E--~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~   91 (301)
T TIGR03438        21 YFYDARGSELFEQICEL-----PEYYPTRTE--AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARY   91 (301)
T ss_pred             hcccchHHHHHHHHHCC-----CccccHHHH--HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeE
Confidence            3566 567788877542     234432111  011122223344444  467899999999999999999873  6899


Q ss_pred             EEEcCCHHHHHHHHHHHHHc
Q 036521          577 TGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       577 ~gid~S~~~l~~a~~~~~~~  596 (602)
                      +|||+|++|++.|++++...
T Consensus        92 ~~iDiS~~mL~~a~~~l~~~  111 (301)
T TIGR03438        92 VPIDISADALKESAAALAAD  111 (301)
T ss_pred             EEEECCHHHHHHHHHHHHhh
Confidence            99999999999999987653

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.34  E-value=1.1e-06  Score=84.93  Aligned_cols=50  Identities=32%  Similarity=0.490  Sum_probs=45.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++.+|||||||+|.++..+++. .+++|+|||+|++|++.|+++++..++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~   90 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT   90 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC
Confidence            6779999999999999999987 4679999999999999999999887763

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.33  E-value=1.3e-06  Score=87.90  Aligned_cols=59  Identities=24%  Similarity=0.251  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+..+.+++.+++.++++|||||||+|.++..++++ +.+|+|||+++.+++.+++++..
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~   73 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA   73 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc
Confidence            456678889999999999999999999999999997 78999999999999999988753

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.32  E-value=1.4e-06  Score=84.77  Aligned_cols=49  Identities=18%  Similarity=0.123  Sum_probs=41.6

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .++.+.+.++.+|||+|||.|..++++|++ |++|||||+|+..++.+.+
T Consensus        26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~   74 (213)
T TIGR03840        26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFA   74 (213)
T ss_pred             HHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHH
Confidence            344444457779999999999999999996 9999999999999998643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.32  E-value=2e-06  Score=87.62  Aligned_cols=52  Identities=21%  Similarity=0.365  Sum_probs=46.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +++.+|||+|||+|.+++.++++ .+++|+|+|+|+++++.|+++++..|+.+
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~  172 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLED  172 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            44579999999999999999987 46899999999999999999999988753

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.32  E-value=1.4e-06  Score=91.45  Aligned_cols=73  Identities=11%  Similarity=0.273  Sum_probs=57.0

Q ss_pred             ccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          521 CPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       521 ~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+.|...  .++..-    +.+++.+....+.+|||+|||+|.+++.++++ ++++|+++|+|+.+++.|+++++.++.+
T Consensus       205 ~gVFs~~--~LD~Gt----rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~  278 (378)
T PRK15001        205 ANVFSRT--GLDIGA----RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE  278 (378)
T ss_pred             CCccCCC--CcChHH----HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence            5777643  333333    24666776555679999999999999999987 4789999999999999999999877643

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.31  E-value=1.4e-06  Score=82.53  Aligned_cols=56  Identities=23%  Similarity=0.208  Sum_probs=47.8

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +.+.+...++++|||+|||+|.++..+++. +.+|+|+|+|++|++.++++++..++
T Consensus        11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~   66 (179)
T TIGR00537        11 LEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV   66 (179)
T ss_pred             HHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            445555556789999999999999999986 55999999999999999999987765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.31  E-value=3.5e-07  Score=86.42  Aligned_cols=82  Identities=23%  Similarity=0.297  Sum_probs=65.9

Q ss_pred             HhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE
Q 036521          496 RNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN  575 (602)
Q Consensus       496 ~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~  575 (602)
                      .-|..-+|.-.+-|+..+-+...|+.              -.+++.++.+++..+=.++||+|||||-.+..+-.. -.+
T Consensus        85 aYVe~LFD~~Ae~Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~  149 (287)
T COG4976          85 AYVETLFDQYAERFDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADR  149 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-Hhh
Confidence            45667788888888888777767753              235567788888777789999999999999887664 568


Q ss_pred             EEEEcCCHHHHHHHHHH
Q 036521          576 YTGITLSAEQLKYAEMK  592 (602)
Q Consensus       576 v~gid~S~~~l~~a~~~  592 (602)
                      .+|||||+.|++.|.++
T Consensus       150 ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         150 LTGVDISENMLAKAHEK  166 (287)
T ss_pred             ccCCchhHHHHHHHHhc
Confidence            99999999999999875

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.28  E-value=2e-06  Score=89.67  Aligned_cols=59  Identities=24%  Similarity=0.375  Sum_probs=49.6

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+++.+......+|||+|||+|.+++.++++ .+.+|+++|+|+.+++.|+++++..+++
T Consensus       187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~  246 (342)
T PRK09489        187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE  246 (342)
T ss_pred             HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            3455555444558999999999999999987 4579999999999999999999988875

>TIGR00452 methyltransferase, putative

Probab=98.27  E-value=3.8e-06  Score=86.27  Aligned_cols=57  Identities=23%  Similarity=0.313  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          534 AQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       534 aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +..-+.+.++..++..+|++|||||||+|.++..++.. |+ .|+|||+|+.|+.+++.
T Consensus       105 ~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~  162 (314)
T TIGR00452       105 RSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEA  162 (314)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH
Confidence            33445567888888888999999999999999999886 54 79999999999987654

Known examples to date are restricted to the proteobacteria.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.27  E-value=1.4e-06  Score=83.65  Aligned_cols=50  Identities=38%  Similarity=0.595  Sum_probs=45.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...+|||||||+|.++..+|++ .+.+|+|||+|+++++.|+++++..++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~   66 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK   66 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC
Confidence            4569999999999999999987 5789999999999999999999988775

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.27  E-value=2e-06  Score=83.09  Aligned_cols=64  Identities=22%  Similarity=0.256  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      -.....+++.+.+++|++|||||||+|..+..+|+-.|  .+|++||+.++.++.|+++++..++.
T Consensus        58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~  123 (209)
T PF01135_consen   58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID  123 (209)
T ss_dssp             HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC
Confidence            34566889999999999999999999999999998633  47999999999999999999988764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.25  E-value=1.3e-06  Score=74.42  Aligned_cols=45  Identities=31%  Similarity=0.637  Sum_probs=37.5

Q ss_pred             EEEEecCchHHHHHHHhcc--C--CEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          554 VLEIGCGWGTFAIEVVRQT--G--CNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       554 vLDiGcG~G~~~~~la~~~--g--~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      |||+|||+|..+..+++..  +  .+++|||+|++|++.++++....+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~   49 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP   49 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC
Confidence            7999999999999999863  3  7999999999999999999987665

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.25  E-value=2.4e-06  Score=88.22  Aligned_cols=62  Identities=16%  Similarity=0.320  Sum_probs=54.8

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .+.+++.++++++.+|||||||+|.+++.++++ ++++++++|+ +++++.+++++++.|++++
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~r  200 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADR  200 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccce
Confidence            345777888889999999999999999999998 5789999997 7999999999999998754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK04266 fibrillarin; Provisional

Probab=98.24  E-value=2.1e-06  Score=84.29  Aligned_cols=52  Identities=17%  Similarity=0.174  Sum_probs=46.2

Q ss_pred             HHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      +++++++|++|||+|||+|.++.++++.. +.+|+|+|+|++|++.+.+++++
T Consensus        66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~  118 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE  118 (226)
T ss_pred             hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh
Confidence            46899999999999999999999999974 36899999999999988877764

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.24  E-value=1.3e-05  Score=88.76  Aligned_cols=144  Identities=15%  Similarity=0.013  Sum_probs=94.6

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHH-HHHHhcCccccCCCCcEEEecCCcHhHHHHHH
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSIL-SFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVI  141 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l-~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la  141 (602)
                      ...|+.+|+++.. ..+..+.++. +....++.+|.+.   |+.+.+ .+...       .. ..+...||++.++++|+
T Consensus       160 ~~~s~~~~~~~~~-~~~~l~~~l~-~~~~~~g~~p~~~---~~~~~l~~~~~~-------~~-g~~~~~gG~~~l~~al~  226 (502)
T TIGR02734       160 AWRSLYSKVARFF-SDERLRQAFS-FHALFLGGNPFRT---PSIYALISALER-------EW-GVWFPRGGTGALVAAMA  226 (502)
T ss_pred             CcCCHHHHHHhhc-CCHHHHHHhc-ccceeeccCcccc---hHHHHHHHHHHh-------hc-eEEEcCCCHHHHHHHHH
Confidence            4689999999864 4444444443 2233556666554   222222 22211       11 23356899999999999


Q ss_pred             HHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecChHHHHh-hccCCCCH-HHHhhccCccccceeEE
Q 036521          142 ALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHAPDALR-ILGNQSTF-EEKRLLGAFQYVYSDIF  218 (602)
Q Consensus       142 ~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~~~a~~-ll~~~~~~-~~~~~l~~~~y~~~~~v  218 (602)
                      +.+.++|++|+++++|++|..++++ +.|.+.+|+++.||+||+|+++..+.. |++....+ ...+.+.++++.....+
T Consensus       227 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~  306 (502)
T TIGR02734       227 KLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFV  306 (502)
T ss_pred             HHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeE
Confidence            9999999999999999999987765 567778887899999999999877664 55432222 23345566665554433


Q ss_pred             E
Q 036521          219 L  219 (602)
Q Consensus       219 l  219 (602)
                      +
T Consensus       307 ~  307 (502)
T TIGR02734       307 L  307 (502)
T ss_pred             E
Confidence            3

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.23  E-value=2.9e-06  Score=82.89  Aligned_cols=48  Identities=21%  Similarity=0.163  Sum_probs=41.7

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAE  590 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~  590 (602)
                      .++.+.+.++.+|||+|||.|..+++||++ |++|+|||+|+..++.+.
T Consensus        29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255         29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFF   76 (218)
T ss_pred             HHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHH
Confidence            344455667789999999999999999996 999999999999999874

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.23  E-value=3.7e-06  Score=87.15  Aligned_cols=60  Identities=23%  Similarity=0.198  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          535 QMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       535 q~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ...+.+.++..++..+|.+|||||||+|.++..+++.....|+|||+|+.|+.+++...+
T Consensus       107 s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~  166 (322)
T PRK15068        107 SDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRK  166 (322)
T ss_pred             HHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHH
Confidence            344556677777766788999999999999999999733479999999999987665443

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.22  E-value=2.4e-06  Score=83.63  Aligned_cols=61  Identities=21%  Similarity=0.335  Sum_probs=53.1

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .+.....+....+|||||||.|.+++.+|++ ..++++||++++++.+.|+++++.+++++|
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~r   96 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEER   96 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhc
Confidence            3445556666789999999999999999998 459999999999999999999999988765

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=3.1e-06  Score=84.59  Aligned_cols=61  Identities=21%  Similarity=0.462  Sum_probs=55.1

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+++.+....+.+|||+|||+|.+++.+|++ +..+||-+|+|...++.||++++.+++++
T Consensus       148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~  209 (300)
T COG2813         148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN  209 (300)
T ss_pred             HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc
Confidence            36788888877779999999999999999998 46899999999999999999999998875

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.21  E-value=4.2e-06  Score=85.46  Aligned_cols=51  Identities=20%  Similarity=0.336  Sum_probs=45.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++.+|||+|||+|.+++.+++. .+++|+|+|+|+++++.|+++++..++++
T Consensus       114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~  165 (284)
T TIGR00536       114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEH  165 (284)
T ss_pred             CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            3369999999999999999987 45899999999999999999999888753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.21  E-value=7.7e-06  Score=80.96  Aligned_cols=62  Identities=32%  Similarity=0.481  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ...++.+...+...++.+|||||||+|.++..+++. +++|+|+|+|+++++.|++++...++
T Consensus        34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~   95 (233)
T PRK05134         34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL   95 (233)
T ss_pred             HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC
Confidence            344456666666668899999999999999999985 89999999999999999998876554

>PRK08317 hypothetical protein; Provisional

Probab=98.21  E-value=3.7e-06  Score=83.18  Aligned_cols=55  Identities=31%  Similarity=0.414  Sum_probs=49.2

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~  592 (602)
                      ..+.+++.+.++++++|||||||+|.++..++++.  +++|+|+|+|+.+++.|+++
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            33567888899999999999999999999999874  47999999999999999988

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.20  E-value=3.8e-06  Score=88.43  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=48.2

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ++.+++.+  +++.+|||+|||+|.+++.++++ .+++|+|+|+|+++++.|+++++..+.
T Consensus       242 Ve~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~  300 (423)
T PRK14966        242 VEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA  300 (423)
T ss_pred             HHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            34444443  45679999999999999999875 578999999999999999999987764

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.20  E-value=3.7e-06  Score=87.71  Aligned_cols=59  Identities=27%  Similarity=0.413  Sum_probs=52.8

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+++.+++++|++|||+|||+|.+++.++. .+++|+|+|+|++|++.|+++++..|+++
T Consensus       173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~  231 (329)
T TIGR01177       173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIED  231 (329)
T ss_pred             HHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCC
Confidence            456667889999999999999999999887 59999999999999999999999988764

This family is found exclusively in the Archaea.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=3.9e-06  Score=85.05  Aligned_cols=46  Identities=24%  Similarity=0.509  Sum_probs=43.3

Q ss_pred             eEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          553 GVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       553 ~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +|||||||+|.+++.+|.+ ..++|+|+|+|+..++.|+++++..|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l  159 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL  159 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            7999999999999999997 346999999999999999999999997

>PRK06202 hypothetical protein; Provisional

Probab=98.20  E-value=2.5e-06  Score=84.49  Aligned_cols=51  Identities=25%  Similarity=0.473  Sum_probs=42.0

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-----cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~-----~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..++.+|||||||+|.++..+++.     .+++|+|+|+|++|++.|+++....++
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~  113 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV  113 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC
Confidence            356789999999999999888753     246999999999999999998754443

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.19  E-value=4.1e-06  Score=87.61  Aligned_cols=60  Identities=13%  Similarity=0.202  Sum_probs=52.4

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+++.+....+..+||||||+|.++..+|++ ++..++|||+++.+++.|.+++...|+++
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N  173 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN  173 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            4556666666789999999999999999998 57899999999999999999999988754

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.18  E-value=2.9e-06  Score=74.12  Aligned_cols=50  Identities=32%  Similarity=0.624  Sum_probs=45.3

Q ss_pred             CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      |.+|||+|||.|.+++.+++....+++|+|+++..++.|++++...++++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~   50 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDD   50 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCc
Confidence            57999999999999999998633899999999999999999999988754

...

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.17  E-value=5.6e-06  Score=89.77  Aligned_cols=63  Identities=21%  Similarity=0.349  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+++.+.+.+.++++++|||+|||.|.+++.+|+. ..+|+|||+|+++++.|+++++..|++
T Consensus       278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~  340 (431)
T TIGR00479       278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA  340 (431)
T ss_pred             HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC
Confidence            455666777778888899999999999999999985 679999999999999999999988874

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK04148 hypothetical protein; Provisional

Probab=98.17  E-value=6.8e-06  Score=72.85  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=43.8

Q ss_pred             HHHHHHccCCCCCeEEEEecCchH-HHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGT-FAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~-~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      +.+.+.+....+.+|||||||.|. ++..|++. |++|+++|+|++.++.++++.
T Consensus         6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~~   59 (134)
T PRK04148          6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKLG   59 (134)
T ss_pred             HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhC
Confidence            345566655667899999999996 99999985 999999999999888887763

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.16  E-value=6.2e-06  Score=84.87  Aligned_cols=49  Identities=22%  Similarity=0.412  Sum_probs=45.1

Q ss_pred             CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          552 HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       552 ~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+|||+|||+|.+++.++++ .+++|+|+|+|+.+++.|+++++..|+.+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~  184 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLED  184 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC
Confidence            68999999999999999987 46899999999999999999999988754

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.16  E-value=4.6e-06  Score=84.66  Aligned_cols=55  Identities=27%  Similarity=0.430  Sum_probs=47.3

Q ss_pred             HccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          545 KARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       545 ~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..++++|++|||||||+|..++.+++..+  .+|+|+|+|++|++.|+++....++.
T Consensus        72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~  128 (272)
T PRK11873         72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT  128 (272)
T ss_pred             hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC
Confidence            34678999999999999999888877644  47999999999999999998887763

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.16  E-value=6.4e-06  Score=84.58  Aligned_cols=52  Identities=21%  Similarity=0.305  Sum_probs=46.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEA-GLQVT  601 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~-gl~~~  601 (602)
                      ++.+|||||||+|.+...++.+ ++++++|+|+++..++.|+++++.. +++++
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~  167 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGA  167 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCc
Confidence            4579999999999888887765 7899999999999999999999998 78653

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.15  E-value=1.9e-06  Score=71.84  Aligned_cols=43  Identities=40%  Similarity=0.753  Sum_probs=37.6

Q ss_pred             EEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          555 LEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       555 LDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ||||||.|..+..++++.+.+|+|+|+|++|++.++++....+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~   43 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG   43 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC
Confidence            8999999999999999658899999999999999999987654

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK06922 hypothetical protein; Provisional

Probab=98.15  E-value=3.7e-06  Score=92.51  Aligned_cols=51  Identities=20%  Similarity=0.331  Sum_probs=44.1

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ...++.+|||||||+|.++..++++ .+++|+|+|+|+.|++.|+++....+
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g  466 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG  466 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence            3446889999999999999998886 57899999999999999999876544

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.13  E-value=3.6e-06  Score=78.78  Aligned_cols=50  Identities=18%  Similarity=0.387  Sum_probs=43.3

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .|.+.  ++||.||||+|||.|.+..+|.++.++++.||+++++.+..+.++
T Consensus         6 ~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r   55 (193)
T PF07021_consen    6 IIAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR   55 (193)
T ss_pred             HHHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc
Confidence            34443  578999999999999999999987899999999999998887654

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.12  E-value=6.5e-06  Score=82.61  Aligned_cols=58  Identities=22%  Similarity=0.280  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ....+.+++.+++.++++|||||||+|.++..++++ +.+|+++|+++.+++.++++..
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~   72 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLS   72 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhC
Confidence            455667888888889999999999999999999996 6789999999999999998764

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.10  E-value=5.3e-06  Score=76.63  Aligned_cols=40  Identities=33%  Similarity=0.718  Sum_probs=36.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKY  588 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~  588 (602)
                      .+++.+|||||||.|.++..+++. |++|+|+|+|+.+++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK   59 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh
Confidence            678899999999999999999885 8899999999999976

...

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.10  E-value=1e-05  Score=80.94  Aligned_cols=48  Identities=17%  Similarity=0.343  Sum_probs=42.8

Q ss_pred             CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +.+|||+|||+|.+++.++++ .+.+|+|+|+|+++++.|+++++..+.
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~  135 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG  135 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            458999999999999999876 467999999999999999999987653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.10  E-value=1.1e-05  Score=80.76  Aligned_cols=62  Identities=23%  Similarity=0.389  Sum_probs=50.9

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..++.+++.+. ..+.+|||+|||+|.++..+++. .+++|+|+|+|+++++.|+++++..+++
T Consensus        75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~  137 (251)
T TIGR03534        75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD  137 (251)
T ss_pred             HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            34445555554 34569999999999999999986 4679999999999999999999988764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=2.4e-05  Score=83.48  Aligned_cols=157  Identities=14%  Similarity=0.037  Sum_probs=102.1

Q ss_pred             CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHh-HHHH
Q 036521           61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHS-YVNK  139 (602)
Q Consensus        61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~-l~~~  139 (602)
                      +.|++|+.|||++++..+......|.|++.+.....++..+.-+.+..+..+.-..    .+.+...-+.+++.+ +..+
T Consensus       145 eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~----~~~~i~~~~~g~~~E~~~~p  220 (485)
T COG3349         145 ELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT----LEASILRNLRGSPDEVLLQP  220 (485)
T ss_pred             HHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc----cCcchhhhhcCCCcceeeeh
Confidence            34789999999999999999999999999999988888764434333333332110    122333344555443 4578


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEecC---C--eEEEEeCCCc---EEecCEEEEecChHHHHhhccCCCC-HHHHhhccCc
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQYD---E--GRTEVRGDGF---QGFYDGCIMAVHAPDALRILGNQST-FEEKRLLGAF  210 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~~---~--gv~v~~~~g~---~~~ad~VI~A~p~~~a~~ll~~~~~-~~~~~~l~~~  210 (602)
                      +.++++++|.++++..+|..|.-+.   .  .+.+... +.   ...++.++-+..-+...++++.++. .++...|...
T Consensus       221 ~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l  299 (485)
T COG3349         221 WTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGL  299 (485)
T ss_pred             hhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccc
Confidence            8999999999999999999997654   2  1223222 32   2346666666666777777775554 4455555555


Q ss_pred             cccceeEEE-ecC
Q 036521          211 QYVYSDIFL-HRD  222 (602)
Q Consensus       211 ~y~~~~~vl-~~d  222 (602)
                      ...+.+.+. .+|
T Consensus       300 ~~~p~~~~~l~~~  312 (485)
T COG3349         300 RLVPVITLHLRFD  312 (485)
T ss_pred             cccceeEEEEeec
Confidence            556665443 344

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.07  E-value=7e-06  Score=78.87  Aligned_cols=49  Identities=18%  Similarity=0.298  Sum_probs=41.7

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+.+.+  +++++|||||||+|.++..+++..++.++|||+|+++++.|++
T Consensus         6 ~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~   54 (194)
T TIGR02081         6 SILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA   54 (194)
T ss_pred             HHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH
Confidence            444443  4788999999999999999987767899999999999999865

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.07  E-value=1.2e-05  Score=85.30  Aligned_cols=80  Identities=16%  Similarity=0.251  Sum_probs=58.9

Q ss_pred             CCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          516 SMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       516 ~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+.++..-|-+......   ..+++.+.+.+...++.+|||+|||+|.+++.+|.+ +.+|+|||+|+.+++.|+++++.
T Consensus       202 ~~~~~~~~F~Q~n~~~~---~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~  277 (374)
T TIGR02085       202 PLVIRPQSFFQTNPKVA---AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQM  277 (374)
T ss_pred             EEEECCCccccCCHHHH---HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHH
Confidence            45555554533333322   233444455554445679999999999999999985 78999999999999999999999


Q ss_pred             cCCC
Q 036521          596 AGLQ  599 (602)
Q Consensus       596 ~gl~  599 (602)
                      .+++
T Consensus       278 ~~~~  281 (374)
T TIGR02085       278 LGLD  281 (374)
T ss_pred             cCCC
Confidence            8874

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.06  E-value=9.2e-06  Score=87.79  Aligned_cols=59  Identities=15%  Similarity=0.239  Sum_probs=52.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+++++|++|||+|||+|+.+.++++.. +.+|+++|+|+++++.++++++..|+.
T Consensus       235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~  294 (427)
T PRK10901        235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK  294 (427)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            45567788899999999999999999999874 369999999999999999999988764

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.06  E-value=1.1e-05  Score=88.80  Aligned_cols=51  Identities=22%  Similarity=0.301  Sum_probs=45.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++.+|||+|||+|.+++.++++ .+++|+|+|+|+++++.|+++++..++.+
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~  189 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTD  189 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCcc
Confidence            3568999999999999999876 57899999999999999999999888754

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=1.6e-05  Score=73.81  Aligned_cols=50  Identities=26%  Similarity=0.394  Sum_probs=44.0

Q ss_pred             HccCCCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521          545 KARVSKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       545 ~l~l~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ..+.=.|..|+|+|||+|.+++.++-. | .+|+|||+++++++.+++++.+
T Consensus        40 ~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~   90 (198)
T COG2263          40 LRGDLEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEE   90 (198)
T ss_pred             HcCCcCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHh
Confidence            344457889999999999999988874 6 6999999999999999999987

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.04  E-value=1e-05  Score=78.74  Aligned_cols=52  Identities=23%  Similarity=0.424  Sum_probs=47.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .+.++||+|||+|.+++.++.. ..++|++||.|+..+..|.++++..++.++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~  200 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGR  200 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence            4558999999999999999887 679999999999999999999999999875

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.04  E-value=9.8e-06  Score=87.43  Aligned_cols=59  Identities=14%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+++++|.+|||+|||+|+.+.++++..  +.+|+++|+|+++++.+++++++.|+.
T Consensus       228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~  288 (431)
T PRK14903        228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS  288 (431)
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            34456788999999999999999999999863  579999999999999999999998875

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.03  E-value=1e-05  Score=88.02  Aligned_cols=59  Identities=17%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+.+++|++|||+|||+|+.+.++++..  +++|+++|+|+++++.++++++..|++
T Consensus       241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~  301 (444)
T PRK14902        241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT  301 (444)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            44556778899999999999999999999863  579999999999999999999998875

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.02  E-value=1.4e-05  Score=80.66  Aligned_cols=57  Identities=12%  Similarity=0.075  Sum_probs=50.7

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...+++++|++|||+|||.|+.+..+|+..  ...|+++|+|+++++.++++++..|+.
T Consensus        64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~  122 (264)
T TIGR00446        64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL  122 (264)
T ss_pred             HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence            346678899999999999999999998863  358999999999999999999998874

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.01  E-value=1.3e-05  Score=87.22  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=51.8

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+..+.+.+|++|||+|||+|+.+.++++..  +.+|+|+|+|+++++.+++++++.|++
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~  301 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT  301 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            34566778899999999999999999998752  469999999999999999999998875

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.01  E-value=1.2e-05  Score=86.85  Aligned_cols=59  Identities=10%  Similarity=0.116  Sum_probs=53.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+++++|++|||+|||.|+.+.++++.. +++|+++|+|+++++.++++++..|++
T Consensus       229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~  288 (426)
T TIGR00563       229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT  288 (426)
T ss_pred             HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            56677888999999999999999999999874 479999999999999999999998875

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.01  E-value=8.1e-05  Score=81.41  Aligned_cols=209  Identities=13%  Similarity=0.089  Sum_probs=120.7

Q ss_pred             cEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecChHHHHh--hccCCCC-
Q 036521          125 QWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHAPDALR--ILGNQST-  200 (602)
Q Consensus       125 ~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~~~a~~--ll~~~~~-  200 (602)
                      ....+.+|+..++..+++.|     +|+++.+|..|...+++ +.++..++..+.+|.||+++|...+..  +...|+. 
T Consensus       210 ~~~~~~~G~~~v~~~la~~l-----~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp  284 (501)
T KOG0029|consen  210 IHLLMKGGYEPVVNSLAEGL-----DIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP  284 (501)
T ss_pred             chhHhhCCccHHHhhcCCCc-----ceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence            44678899999999999866     89999999999998777 344444454589999999999999887  5444444 


Q ss_pred             HHHHhhccCccccce-eEEEecCCCCCCCCCC-----------cccc--cccccCCCCCeEEEEeccc----cccCCCCC
Q 036521          201 FEEKRLLGAFQYVYS-DIFLHRDKNFMPRNPA-----------AWSA--WNFLGGLDGKACLTYWLNV----LQNIGDGE  262 (602)
Q Consensus       201 ~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~~~-----------~w~s--~n~~~~~~~~~~~t~~~~~----~~~l~~~~  262 (602)
                      ....+.+.++.+... .+.+.++..+++.+..           .+-.  +++.........++...+.    ...+++++
T Consensus       285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~  364 (501)
T KOG0029|consen  285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSE  364 (501)
T ss_pred             HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHH
Confidence            445667888877654 4566788777642221           1111  2222212222344443332    12222211


Q ss_pred             CCCCeEE---EcCCC-CCCcc---eEEEEEccC---CCCCh----hHHHHHHHHHhhcCCCCeEEecccc---CCCCChh
Q 036521          263 TGLPFLV---TLNPD-HTPNN---TLLKWSTGH---PVPSV----AASKASLELDHIQGKRGIWFCEAYQ---GYGFHED  325 (602)
Q Consensus       263 ~~~~v~~---tl~p~-~~p~~---~l~r~~~~~---p~~~~----~~~~~~~~l~~lqg~~gl~~aG~~~---g~g~~E~  325 (602)
                      ....++.   .+.+. ..+++   .+.+|..-.   =.|+.    .......++.. .-.+.+||+|.++   ..|.+++
T Consensus       365 ~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~-pi~~~~ffage~t~~~~~~tm~G  443 (501)
T KOG0029|consen  365 IVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAE-PIKNRVFFAGEATSRKYPGTMHG  443 (501)
T ss_pred             HHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhc-cccCcEEecchhhcccCCCchHH
Confidence            1111111   11121 11222   466774211   11111    11111122221 1123599999997   4778999


Q ss_pred             HHHHHHHHHHHhcC
Q 036521          326 GLKAGMIAAHGVLG  339 (602)
Q Consensus       326 av~SG~~aA~~ll~  339 (602)
                      |+.||+.+|..|+.
T Consensus       444 A~~sG~~~a~~i~~  457 (501)
T KOG0029|consen  444 AYLSGLRAASDILD  457 (501)
T ss_pred             HHHhhHHHHHHHHH
Confidence            99999999998854

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.00  E-value=1.4e-05  Score=78.12  Aligned_cols=52  Identities=23%  Similarity=0.321  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHccC-CCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHH
Q 036521          536 MRKHSLQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKY  588 (602)
Q Consensus       536 ~~~~~~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~  588 (602)
                      ..++..+++.+++ .+|..|||||||+|.++..++++ |+ +|+|||+|++|+..
T Consensus        60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            3466677888776 47789999999999999999996 54 89999999999886

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.00  E-value=2.3e-05  Score=75.28  Aligned_cols=51  Identities=10%  Similarity=0.059  Sum_probs=44.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .++.+|||+|||+|.+++.++.+...+|++||++++.++.++++++..|++
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~  102 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG  102 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            467899999999999999755544569999999999999999999988864

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=97.99  E-value=1.8e-05  Score=83.00  Aligned_cols=113  Identities=18%  Similarity=0.224  Sum_probs=84.4

Q ss_pred             CCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccC-CCCcEEEecCCcHhHHHHHHH
Q 036521           64 DETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLF-GRPQWLTVRSRSHSYVNKVIA  142 (602)
Q Consensus        64 ~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~-~~~~~~~~~gG~~~l~~~la~  142 (602)
                      ..|..+||+++++++.|++.++.+.++..|+.+. ++   +++        +|+.++- ..+..+.++||+.++++.|.+
T Consensus        69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i---~a~--------~G~vSla~a~~gl~sV~GGN~qI~~~ll~  136 (368)
T PF07156_consen   69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NI---HAF--------AGLVSLAGATGGLWSVEGGNWQIFEGLLE  136 (368)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-ch---hhh--------hhheeeeeccCCceEecCCHHHHHHHHHH
Confidence            4689999999999999999999999999998753 33   221        2322221 234567999999999999998


Q ss_pred             HHhcCCCeEEeCCceeEE-EecCCe---EEEEeCC--C-cEEecCEEEEecChHHHH
Q 036521          143 LLESLGCQIKTGCEVCSV-LQYDEG---RTEVRGD--G-FQGFYDGCIMAVHAPDAL  192 (602)
Q Consensus       143 ~l~~~g~~v~l~t~V~~i-~~~~~g---v~v~~~~--g-~~~~ad~VI~A~p~~~a~  192 (602)
                      .-   +.+| ++++|++| .+.+++   ++|+..+  + ....+|.||+|+|-+...
T Consensus       137 ~S---~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~  189 (368)
T PF07156_consen  137 AS---GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF  189 (368)
T ss_pred             Hc---cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence            76   8899 99999999 455554   4565432  2 234689999999996654

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.99  E-value=1.9e-05  Score=80.08  Aligned_cols=45  Identities=27%  Similarity=0.520  Sum_probs=38.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcc----CCEEEEEcCCHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQT----GCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~----g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .++.+|||||||+|.++..+++..    ++.|+|+|+|++|++.|+++.
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~  132 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY  132 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC
Confidence            455789999999999999988752    358999999999999998764

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.96  E-value=4e-07  Score=77.20  Aligned_cols=44  Identities=32%  Similarity=0.624  Sum_probs=37.1

Q ss_pred             EEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          555 LEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       555 LDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ||||||+|.++..++++ .+.+++|+|+|+.|++.|+++..+.+.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~   45 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN   45 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC
Confidence            79999999999999987 578999999999999999999887664

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.96  E-value=2.1e-05  Score=77.81  Aligned_cols=60  Identities=22%  Similarity=0.344  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHccC---CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521          535 QMRKHSLQIEKARV---SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       535 q~~~~~~l~~~l~l---~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      |......+++.+..   ..+.+|||||||+|.++..+++. ...+|+|+|+|+++++.++++..
T Consensus        16 q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~   79 (240)
T TIGR02072        16 QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS   79 (240)
T ss_pred             HHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence            33344444444432   34479999999999999999987 35689999999999999998753

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.95  E-value=3.1e-05  Score=81.41  Aligned_cols=62  Identities=16%  Similarity=0.297  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+++.+++.+...+ .+|||++||+|.+++.+++. ..+|+|||+|+++++.|+++++.+|++
T Consensus       184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~  245 (353)
T TIGR02143       184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID  245 (353)
T ss_pred             HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            345556666665434 47999999999999999986 469999999999999999999998875

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.94  E-value=2.8e-05  Score=78.92  Aligned_cols=56  Identities=21%  Similarity=0.365  Sum_probs=47.4

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+.++..+...++.+|||+|||+|.+++.+++. ..++|+|+|+|+++++.|+++++
T Consensus        97 ~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328         97 VEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             HHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            334444555667889999999999999999987 35899999999999999999987

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.93  E-value=1.9e-05  Score=80.11  Aligned_cols=58  Identities=7%  Similarity=0.058  Sum_probs=51.9

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      +++.+++.+.+++|..+||.+||.|+.+..+++..  .++|+|+|.++++++.|+++..+
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            45678899999999999999999999999999984  48999999999999999988754

>PHA03411 putative methyltransferase; Provisional

Probab=97.93  E-value=3.6e-05  Score=76.61  Aligned_cols=45  Identities=13%  Similarity=0.189  Sum_probs=39.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~  593 (602)
                      +++.+|||+|||+|.+++.++++. +.+|+|+|+|++|++.|+++.
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~  108 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL  108 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence            445699999999999999888763 679999999999999999864

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.91  E-value=2.2e-05  Score=84.99  Aligned_cols=59  Identities=17%  Similarity=0.138  Sum_probs=52.6

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+++++|++|||+|||.|+.+.++++..  ..+|+++|+|+++++.++++++..|+.
T Consensus       243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~  303 (434)
T PRK14901        243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK  303 (434)
T ss_pred             HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC
Confidence            45566788999999999999999999999863  369999999999999999999999875

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.90  E-value=2.8e-05  Score=76.86  Aligned_cols=55  Identities=18%  Similarity=0.218  Sum_probs=47.4

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      ...+.++|||||||+|..++.+|+.  .+.+|+++|+++++++.|+++++++|++++
T Consensus        65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~  121 (234)
T PLN02781         65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHK  121 (234)
T ss_pred             HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence            3445779999999999988888875  357999999999999999999999998753

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.89  E-value=1.8e-05  Score=83.09  Aligned_cols=105  Identities=14%  Similarity=0.114  Sum_probs=79.2

Q ss_pred             cEEEecCCcHhHHHHHHHHHhcC------CCeEEeCCceeEEEecC-CeEEEEeCCCcEEecCEEEEecChHHHHh----
Q 036521          125 QWLTVRSRSHSYVNKVIALLESL------GCQIKTGCEVCSVLQYD-EGRTEVRGDGFQGFYDGCIMAVHAPDALR----  193 (602)
Q Consensus       125 ~~~~~~gG~~~l~~~la~~l~~~------g~~v~l~t~V~~i~~~~-~gv~v~~~~g~~~~ad~VI~A~p~~~a~~----  193 (602)
                      .....+-|...+.+-|++.+++.      -++++++++|..|...+ +.|.|...||+.+.||+||+++|--...+    
T Consensus       214 ~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~  293 (498)
T KOG0685|consen  214 LLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHK  293 (498)
T ss_pred             hheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhh
Confidence            34455667888888888877521      12345559999999875 45899999999999999999999877776    


Q ss_pred             hccCCCCHHHHhhccCccccc-eeEEEecCCCCCCCC
Q 036521          194 ILGNQSTFEEKRLLGAFQYVY-SDIFLHRDKNFMPRN  229 (602)
Q Consensus       194 ll~~~~~~~~~~~l~~~~y~~-~~~vl~~d~~l~p~~  229 (602)
                      ++.++++..-.+++.++.+-. +-+.+-+..+++|.+
T Consensus       294 lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~  330 (498)
T KOG0685|consen  294 LFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSD  330 (498)
T ss_pred             hcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCC
Confidence            777656666778888888855 467788888887765

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.89  E-value=2.8e-05  Score=78.40  Aligned_cols=70  Identities=16%  Similarity=0.266  Sum_probs=48.3

Q ss_pred             cCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchH----HHHHHHhcc------CCEEEEEcCCHHHHHHHHHHH
Q 036521          524 FKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGT----FAIEVVRQT------GCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       524 ~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~----~~~~la~~~------g~~v~gid~S~~~l~~a~~~~  593 (602)
                      |-.+...++.-....+..+++.....++.+|||+|||+|.    +++.+++..      +.+|+|+|+|++|++.|++.+
T Consensus        73 FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       73 FFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             ccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            3333444544444444444544444556799999999996    566666641      478999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=3.9e-05  Score=74.68  Aligned_cols=61  Identities=25%  Similarity=0.313  Sum_probs=56.3

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .|+..+++.||++|||.|.|+|.++.++|..  ...+|++.++-++.++.|++++++.|+.++
T Consensus        85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~  147 (256)
T COG2519          85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDR  147 (256)
T ss_pred             HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccc
Confidence            6889999999999999999999999999975  236999999999999999999999999874

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.88  E-value=5.1e-05  Score=74.52  Aligned_cols=48  Identities=35%  Similarity=0.603  Sum_probs=43.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      .+.+|||+|||+|.++..+++. +++|+|+|+|+++++.+++++...+.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~   92 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL   92 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            4779999999999999999885 78999999999999999999887665

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.86  E-value=5e-05  Score=80.79  Aligned_cols=50  Identities=26%  Similarity=0.327  Sum_probs=45.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+|.+|||+|||+|++++.++.. |+ +|++||+|+.+++.|+++++.+|++
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~  269 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLD  269 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            36889999999999999987764 55 9999999999999999999999985

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=4.1e-05  Score=81.96  Aligned_cols=66  Identities=21%  Similarity=0.391  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          534 AQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       534 aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +...+++..++.++..++++|||+=||.|.+++.+|++ ..+|+|+++++++++.|+++++.+|+.+
T Consensus       277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N  342 (432)
T COG2265         277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN  342 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc
Confidence            33577888999999989999999999999999999985 8899999999999999999999999875

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.84  E-value=2.6e-05  Score=85.80  Aligned_cols=52  Identities=21%  Similarity=0.309  Sum_probs=45.4

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      ..+++.+...++.+|||||||.|.++..++++ +.+|+|||+|++|++.+++.
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~   78 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESI   78 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHH
Confidence            45677777777889999999999999999996 77999999999999988654

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.83  E-value=6.6e-05  Score=79.26  Aligned_cols=62  Identities=18%  Similarity=0.326  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+++.+.+.+... +.+|||++||+|.+++.+++. ..+|+|||+|+.+++.|+++++..|++
T Consensus       193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~  254 (362)
T PRK05031        193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID  254 (362)
T ss_pred             HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            34555666655433 357999999999999999985 568999999999999999999998875

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.81  E-value=7.8e-05  Score=71.20  Aligned_cols=50  Identities=12%  Similarity=0.036  Sum_probs=45.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|.+|||++||+|.+++.++.+ |+ +|++||.+++.++.++++++..++++
T Consensus        49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~~   99 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSGE   99 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCcc
Confidence            5789999999999999999997 55 89999999999999999999988764

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=5.5e-05  Score=74.77  Aligned_cols=58  Identities=22%  Similarity=0.330  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+.++.|++.+++.+++.|||||+|.|.++..++++ +.+|++|++++.+++..+++..
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~   73 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA   73 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc
Confidence            345778999999999999999999999999999996 8899999999999999998864

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.79  E-value=0.00022  Score=73.82  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             CCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCcc-ccCCCCcEEEecCCcHhHHHHHHHH
Q 036521           65 ETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLL-QLFGRPQWLTVRSRSHSYVNKVIAL  143 (602)
Q Consensus        65 ~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~-~~~~~~~~~~~~gG~~~l~~~la~~  143 (602)
                      ++..+|+.++.-...|.    .+.++           .|....++.++..+|+- ..+..+++++.....+.+++.+...
T Consensus        56 ~~~~~~ls~~p~~~~fl----~sal~-----------~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~  120 (408)
T COG2081          56 EAPDEFLSRNPGNGHFL----KSALA-----------RFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKE  120 (408)
T ss_pred             ccHHHHHHhCCCcchHH----HHHHH-----------hCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHH
Confidence            45788888865444433    33322           23334477888888743 2356789999999999999999999


Q ss_pred             HhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          144 LESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       144 l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      +++.|.+|+++++|.+|++++++..|.+.+|+++.+|.+|+|+=
T Consensus       121 ~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG  164 (408)
T COG2081         121 LEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG  164 (408)
T ss_pred             HHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence            99999999999999999999989999999998899999999984

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.79  E-value=7.7e-05  Score=73.76  Aligned_cols=63  Identities=19%  Similarity=0.274  Sum_probs=52.3

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      -+..|+..++++||++|||.|.|.|.++..+++.  ...+|+..|+.++.++.|+++++..|+.+
T Consensus        28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~   92 (247)
T PF08704_consen   28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDD   92 (247)
T ss_dssp             HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred             hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCC
Confidence            3457899999999999999999999999999986  34699999999999999999999999864

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.77  E-value=3.3e-05  Score=75.04  Aligned_cols=46  Identities=15%  Similarity=0.172  Sum_probs=38.3

Q ss_pred             HHHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCH
Q 036521          538 KHSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSA  583 (602)
Q Consensus       538 ~~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~  583 (602)
                      ++..+.++.+ +++|.+|||||||+|.++..++++.  +++|+|||+++
T Consensus        38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            4445666666 5889999999999999999999873  36999999996

>PLN03075 nicotianamine synthase; Provisional

Probab=97.76  E-value=7.5e-05  Score=75.48  Aligned_cols=57  Identities=12%  Similarity=0.124  Sum_probs=43.0

Q ss_pred             HHccCCCCCeEEEEecCchHH-HHHHHh-c-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCC
Q 036521          544 EKARVSKGHGVLEIGCGWGTF-AIEVVR-Q-TGCNYTGITLSAEQLKYAEMKVNE-AGLQV  600 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG~G~~-~~~la~-~-~g~~v~gid~S~~~l~~a~~~~~~-~gl~~  600 (602)
                      ..+...+.++|+|||||.|.+ ++.+++ . .+.+++|+|+|+++++.|++.++. .|+.+
T Consensus       117 ~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~  177 (296)
T PLN03075        117 SQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSK  177 (296)
T ss_pred             HHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccC
Confidence            333333668999999997744 444443 3 578999999999999999999964 77755

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.75  E-value=7.2e-05  Score=78.60  Aligned_cols=63  Identities=24%  Similarity=0.421  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..+++.+++.++.+++ +|||+-||.|.+++.+|++ ..+|+||++++++++.|+++++.+|+++
T Consensus       183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n  245 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDN  245 (352)
T ss_dssp             HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--S
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCc
Confidence            5777888899988777 8999999999999999995 7899999999999999999999998864

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.74  E-value=4.3e-05  Score=71.78  Aligned_cols=59  Identities=17%  Similarity=0.239  Sum_probs=45.7

Q ss_pred             HHHHHHHHH-HccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          536 MRKHSLQIE-KARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       536 ~~~~~~l~~-~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ++|.+.++. .|+-..-.++||+|||.|.++..||.+ --+++++|+|+..++.|++|+..
T Consensus        28 ~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~   87 (201)
T PF05401_consen   28 RRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG   87 (201)
T ss_dssp             HHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC
Confidence            345555554 466556679999999999999999997 35899999999999999999864

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN02672 methionine S-methyltransferase

Probab=97.71  E-value=6.5e-05  Score=88.05  Aligned_cols=49  Identities=22%  Similarity=0.411  Sum_probs=44.1

Q ss_pred             CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.+|||+|||+|.+++.++++ ..++|+|+|+|+++++.|+++++.++++
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~  168 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD  168 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence            568999999999999999987 3579999999999999999999987653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.70  E-value=9.7e-05  Score=84.69  Aligned_cols=49  Identities=27%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +|.+|||+|||+|++++.+++. |+ +|++||+|+.+++.|+++++.+|++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~  587 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLS  587 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999985 65 6999999999999999999999886

>PTZ00146 fibrillarin; Provisional

Probab=97.69  E-value=6.3e-05  Score=75.72  Aligned_cols=51  Identities=16%  Similarity=0.121  Sum_probs=41.5

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ++.+.+++|++|||+|||+|.++.++|+..  ..+|++||+|++|++...+.+
T Consensus       125 ~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a  177 (293)
T PTZ00146        125 VANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA  177 (293)
T ss_pred             cceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence            455678999999999999999999999974  358999999998664444443

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.65  E-value=0.00023  Score=64.62  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=46.1

Q ss_pred             CCCCCeEEEEecCchHHHHHHHh-----ccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVR-----QTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~-----~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ..+..+|+|+|||-|.++..++.     .++.+|+|||.+++.++.|+++.++.+
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            35678999999999999999999     689999999999999999999998876

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.64  E-value=0.00041  Score=76.42  Aligned_cols=120  Identities=19%  Similarity=0.163  Sum_probs=79.0

Q ss_pred             CCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHHHH
Q 036521           65 ETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALL  144 (602)
Q Consensus        65 ~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~l  144 (602)
                      .+..++++.. |..+..+..+.....-.+ .+|.+..   +.+.  ++...     .....+...+||++.++++|++.+
T Consensus       167 ~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~---a~~~--~~~~~-----~~~~G~~~p~GG~~al~~aL~~~~  234 (487)
T COG1233         167 TSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP---ALYL--LLSHL-----GLSGGVFYPRGGMGALVDALAELA  234 (487)
T ss_pred             hhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh---HHHH--HHHHh-----cccCCeeeeeCCHHHHHHHHHHHH
Confidence            4666777765 665555555443322122 3444432   2221  11111     112235566799999999999999


Q ss_pred             hcCCCeEEeCCceeEEEecCC-eEEEEeCCCcEEecCEEEEecChHHHHhhcc
Q 036521          145 ESLGCQIKTGCEVCSVLQYDE-GRTEVRGDGFQGFYDGCIMAVHAPDALRILG  196 (602)
Q Consensus       145 ~~~g~~v~l~t~V~~i~~~~~-gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~  196 (602)
                      +++|++|+++++|++|.-+++ ++++++.+|+.+.+|.||.+..+.....+..
T Consensus       235 ~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~  287 (487)
T COG1233         235 REHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLLG  287 (487)
T ss_pred             HHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhhh
Confidence            999999999999999997765 6788887776789999999997744444443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.64  E-value=0.00013  Score=71.25  Aligned_cols=49  Identities=18%  Similarity=0.199  Sum_probs=42.7

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      ...+.+.++.+||+.|||.|.-+.+||++ |++|+|+|+|+..++.+.++
T Consensus        36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e   84 (226)
T PRK13256         36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQ   84 (226)
T ss_pred             HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHH
Confidence            34455567789999999999999999996 99999999999999998663

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.64  E-value=0.00022  Score=68.81  Aligned_cols=65  Identities=23%  Similarity=0.221  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          534 AQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       534 aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .+-+.+..++...+   -.+||||||+.|.-++++|+.  .+++|+.||++++..+.|++.++++|++++
T Consensus        32 ~~g~lL~~l~~~~~---~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~   98 (205)
T PF01596_consen   32 ETGQLLQMLVRLTR---PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDR   98 (205)
T ss_dssp             HHHHHHHHHHHHHT----SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGG
T ss_pred             HHHHHHHHHHHhcC---CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCc
Confidence            33445555555543   359999999999999999986  368999999999999999999999998754

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.63  E-value=7.2e-05  Score=71.45  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=34.3

Q ss_pred             ccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHH
Q 036521          546 ARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQ  585 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~  585 (602)
                      ..+++|++|||||||+|+++..++++.  .++|+|+|+|+.+
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~   69 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK   69 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence            356789999999999999999998863  4589999999964

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.62  E-value=7.3e-05  Score=72.90  Aligned_cols=51  Identities=25%  Similarity=0.356  Sum_probs=43.9

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      ..++.+..+++.+||+.|||.|.-+..||++ |++|+|||+|+..++.+.+.
T Consensus        28 ~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e   78 (218)
T PF05724_consen   28 EYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEE   78 (218)
T ss_dssp             HHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHH
T ss_pred             HHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHH
Confidence            4455677888899999999999999999996 99999999999999998543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=3.7e-05  Score=81.39  Aligned_cols=94  Identities=17%  Similarity=0.193  Sum_probs=75.1

Q ss_pred             hccchHHHHhhcCCCCccccc-ccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEc
Q 036521          502 YDLSNELFALFMDESMTYSCP-IFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGIT  580 (602)
Q Consensus       502 Yd~~~~~y~~~~~~~~~ys~~-~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid  580 (602)
                      ++...-.++..++-++..|.+ +|...+...    .-.+..+-+.+++..+..+||+.||+|.+++.+|+. -.+|+||+
T Consensus       338 ~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~a----evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvE  412 (534)
T KOG2187|consen  338 VGGDPYITESLLGLTFRISPGAFFQTNTSAA----EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVE  412 (534)
T ss_pred             EccccEEEeecCCeEEEECCchhhccCcHHH----HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeee
Confidence            333345677777878888865 555443322    345566778889999999999999999999999985 67999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCC
Q 036521          581 LSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       581 ~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|++.++.|+++++.+|+++
T Consensus       413 i~~~aV~dA~~nA~~NgisN  432 (534)
T KOG2187|consen  413 ISPDAVEDAEKNAQINGISN  432 (534)
T ss_pred             cChhhcchhhhcchhcCccc
Confidence            99999999999999999876

>PRK04457 spermidine synthase; Provisional

Probab=97.58  E-value=0.00017  Score=72.63  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=41.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+..+|||||||.|.++..+++. .+++|++||+++++++.|++....
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~  112 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL  112 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC
Confidence            35679999999999999999887 578999999999999999998654

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.57  E-value=0.00017  Score=70.44  Aligned_cols=59  Identities=20%  Similarity=0.316  Sum_probs=54.0

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      .++.|+++.++++++.|||||-|+|.++..+.+. |.+|+++++++.|++...++++.-.
T Consensus        46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp  104 (315)
T KOG0820|consen   46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTP  104 (315)
T ss_pred             HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCC
Confidence            4567899999999999999999999999999995 9999999999999999999986544

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.57  E-value=0.00013  Score=69.98  Aligned_cols=49  Identities=35%  Similarity=0.620  Sum_probs=43.7

Q ss_pred             CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          552 HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       552 ~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .-+||||||.|.+.+.+|++ ++..++|||++..-+..|.+++...++++
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N   68 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN   68 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc
Confidence            38999999999999999988 78999999999999999999999998864

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02476 O-methyltransferase

Probab=97.56  E-value=0.00023  Score=71.56  Aligned_cols=54  Identities=15%  Similarity=0.128  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      ....++|||||||+|..++++|+-  .+.+|+++|.+++.++.|+++++++|++++
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~  171 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHK  171 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence            345679999999999999999984  256899999999999999999999999853

>PHA03412 putative methyltransferase; Provisional

Probab=97.54  E-value=0.00011  Score=71.50  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=38.9

Q ss_pred             CCeEEEEecCchHHHHHHHhc----cCCEEEEEcCCHHHHHHHHHHHH
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQ----TGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~----~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +.+|||+|||+|.+++.++++    ...+|++||+++.+++.|+++..
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~   97 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP   97 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence            569999999999999999875    24699999999999999998763

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.54  E-value=0.00026  Score=68.42  Aligned_cols=57  Identities=28%  Similarity=0.290  Sum_probs=50.2

Q ss_pred             HccCCCCCeEEEEecCchHHHHHHHhc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          545 KARVSKGHGVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       545 ~l~l~~g~~vLDiGcG~G~~~~~la~~-~-g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .+.+....+|||||++.|.-++++|.. . ..++|+||+++++.+.|+++.+++|++++
T Consensus        54 L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~  112 (219)
T COG4122          54 LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDR  112 (219)
T ss_pred             HHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcce
Confidence            334456779999999999999999987 3 56899999999999999999999999875

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00011  Score=64.69  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++..|-+-.+--+|++++|+|||.|-+++..+--..-.|.|+||.++.++.+++++.+..++
T Consensus        36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq   97 (185)
T KOG3420|consen   36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ   97 (185)
T ss_pred             HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh
Confidence            44455555565679999999999999996555422347999999999999999999887654

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.46  E-value=0.00031  Score=66.48  Aligned_cols=61  Identities=23%  Similarity=0.294  Sum_probs=48.5

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCN---------YTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~---------v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..++...+.++|+.|||--||+|++.+.+|.. .++.         +.|.|+++++++.|+++++.+|+++
T Consensus        18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~   88 (179)
T PF01170_consen   18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED   88 (179)
T ss_dssp             HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred             HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence            35677788899999999999999999998876 3444         8899999999999999999999864

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.39  E-value=0.00036  Score=71.00  Aligned_cols=52  Identities=23%  Similarity=0.418  Sum_probs=45.7

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +-.++.|||+|||+|-++...|+....+|++||.|. +.+.|++.++.+++++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~  109 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLED  109 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccc
Confidence            557889999999999999999996335899999887 5599999999999986

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.38  E-value=0.00023  Score=73.71  Aligned_cols=46  Identities=26%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ++.+|||+|||-|+-..-.....-..++|+|||.+.++.|++|.++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~  107 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQ  107 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            7889999999977755555553346899999999999999999943

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.37  E-value=0.00029  Score=66.03  Aligned_cols=44  Identities=23%  Similarity=0.217  Sum_probs=40.4

Q ss_pred             eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          553 GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       553 ~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      .|||+|||+|..-.++--..+++||++|.++.|-++|.++++++
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~  122 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK  122 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc
Confidence            58999999999998887667999999999999999999998776

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.36  E-value=0.00041  Score=66.87  Aligned_cols=56  Identities=23%  Similarity=0.364  Sum_probs=42.1

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE-EEEEcCCHHHHHHHHHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~~~  593 (602)
                      .+..+++++++++++..+|||||.|.....+|-..+|+ ++||++.+.-.+.|++..
T Consensus        30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~   86 (205)
T PF08123_consen   30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELL   86 (205)
T ss_dssp             HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHH
Confidence            44567889999999999999999999999988777886 999999999888887644

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.31  E-value=0.0011  Score=71.04  Aligned_cols=85  Identities=19%  Similarity=0.255  Sum_probs=62.3

Q ss_pred             hhhHHHHHHHHHhcCccc-cCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEec
Q 036521          102 SFSAFSILSFYRNHHLLQ-LFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFY  179 (602)
Q Consensus       102 ~~p~~~~l~~~~~~g~~~-~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~a  179 (602)
                      .++..-++.+|..+|+.. ....+..|+...-.+++++.|.+.+.+.|.+|+++++|.+|...+++ +.|.+.+++.+.|
T Consensus        76 ~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a  155 (409)
T PF03486_consen   76 RFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEA  155 (409)
T ss_dssp             HS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEE
T ss_pred             cCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccC
Confidence            345555778888888643 34567899999999999999999999889999999999999998887 7888866668999


Q ss_pred             CEEEEec
Q 036521          180 DGCIMAV  186 (602)
Q Consensus       180 d~VI~A~  186 (602)
                      |+||+|+
T Consensus       156 ~~vILAt  162 (409)
T PF03486_consen  156 DAVILAT  162 (409)
T ss_dssp             SEEEE--
T ss_pred             CEEEEec
Confidence            9999997

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.31  E-value=0.0005  Score=62.31  Aligned_cols=47  Identities=15%  Similarity=0.212  Sum_probs=41.7

Q ss_pred             eEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          553 GVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       553 ~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+||||||+|..+..+++. .+++|+++|.++++++.++++++..++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~   48 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP   48 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence            3899999999999999987 3458999999999999999999887764

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.31  E-value=0.00085  Score=67.36  Aligned_cols=50  Identities=26%  Similarity=0.377  Sum_probs=39.6

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAE  590 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~  590 (602)
                      +++...+.-=.|.+|||||||.|..+..++++ |+ .|+|||.+.--+.+.+
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~  155 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFE  155 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHH
Confidence            45556664447899999999999999999997 65 7999999987665543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.28  E-value=0.00038  Score=66.69  Aligned_cols=54  Identities=17%  Similarity=0.370  Sum_probs=43.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +++|+.|||+.||.|.+++.+|+. .+++|+++|++|..+++.+++++.++++++
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~  153 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENR  153 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTT
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCe
Confidence            678999999999999999999983 378999999999999999999999998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.28  E-value=0.00035  Score=73.04  Aligned_cols=106  Identities=17%  Similarity=0.186  Sum_probs=82.1

Q ss_pred             HHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc
Q 036521          493 QARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT  572 (602)
Q Consensus       493 ~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~  572 (602)
                      ...+.|.++|+...++|...|+..++.+  -+ .+....++.-.+.-....-+..++++..++|+|||-|....+++...
T Consensus        56 ~~~e~~~~~y~~~~dl~~~~w~~~~h~~--~~-~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~  132 (364)
T KOG1269|consen   56 DLPEQIAKYYNNSTDLYERNWGQSFHFG--RI-PEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK  132 (364)
T ss_pred             ccchHHHHHhcccchhhhhhhccchhcc--Cc-cchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc
Confidence            6677889999999999999888885543  33 23344444433332333334467899999999999999999999977


Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          573 GCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       573 g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      ++.++|+|.++.++..+......++++++
T Consensus       133 ~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k  161 (364)
T KOG1269|consen  133 KAGVVGLDNNAYEAFRANELAKKAYLDNK  161 (364)
T ss_pred             cCCccCCCcCHHHHHHHHHHHHHHHhhhh
Confidence            79999999999999999999988888764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.28  E-value=0.00064  Score=72.04  Aligned_cols=51  Identities=18%  Similarity=0.183  Sum_probs=45.4

Q ss_pred             CCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++.+|||++||+|.+++.+|.+.+ .+|+++|++++.++.++++++.+++++
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~  108 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN  108 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            357999999999999999988644 489999999999999999999988764

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.23  E-value=0.00063  Score=56.66  Aligned_cols=41  Identities=32%  Similarity=0.621  Sum_probs=36.2

Q ss_pred             eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          553 GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       553 ~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      +|||+|||.|.++..+++..+.+++++|+++++++.+++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   41 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAA   41 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence            58999999999999999855789999999999999998543

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.22  E-value=0.0016  Score=68.70  Aligned_cols=84  Identities=14%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             hhHHHHHHHHHhcCc-cccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC-cEEecC
Q 036521          103 FSAFSILSFYRNHHL-LQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG-FQGFYD  180 (602)
Q Consensus       103 ~p~~~~l~~~~~~g~-~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g-~~~~ad  180 (602)
                      |+..-++.||...|+ ......+++|+..+-.+++++.|...+.+.|.+|+++++|++|  +++++.|.+.++ +.+.||
T Consensus        54 f~~~d~~~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~  131 (376)
T TIGR03862        54 FDAVALQDWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEAD  131 (376)
T ss_pred             CCHHHHHHHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecC
Confidence            444557788989897 3445667899999999999999999999999999999999999  334577776433 468999


Q ss_pred             EEEEecCh
Q 036521          181 GCIMAVHA  188 (602)
Q Consensus       181 ~VI~A~p~  188 (602)
                      +||+||=.
T Consensus       132 ~vIlAtGG  139 (376)
T TIGR03862       132 AVVLALGG  139 (376)
T ss_pred             EEEEcCCC
Confidence            99999944

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK00811 spermidine synthase; Provisional

Probab=97.20  E-value=0.0012  Score=67.29  Aligned_cols=46  Identities=22%  Similarity=0.224  Sum_probs=40.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ..++||+||||+|..+..++++.+ .+|++||+++++++.|++....
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~  122 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE  122 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH
Confidence            456999999999999999998644 5899999999999999998764

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.18  E-value=0.00065  Score=69.49  Aligned_cols=60  Identities=25%  Similarity=0.367  Sum_probs=54.1

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+++...+++|+.|||==||||++.+.+.- .|++|+|+|++..|++-|+.+.+..|+++
T Consensus       187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~  246 (347)
T COG1041         187 RAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIED  246 (347)
T ss_pred             HHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCc
Confidence            3567778899999999999999999999887 59999999999999999999999888654

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.16  E-value=0.00044  Score=66.55  Aligned_cols=45  Identities=22%  Similarity=0.253  Sum_probs=37.5

Q ss_pred             CCCCC-eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          548 VSKGH-GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       548 l~~g~-~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ..++. .++|+|||+|..++.+|+. --+|+|+|+|++||+.|++.-
T Consensus        30 ~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~   75 (261)
T KOG3010|consen   30 RTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHP   75 (261)
T ss_pred             hCCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCC
Confidence            34454 7999999999888888885 568999999999999987653

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.12  E-value=0.0013  Score=61.98  Aligned_cols=50  Identities=20%  Similarity=0.296  Sum_probs=40.2

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ...++.+|||+|||+|..++.+|+. .+++|+..|.++ .++..+.+++.++
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~   92 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG   92 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred             hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc
Confidence            4567889999999999999999996 578999999999 9999999998765

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02366 spermidine synthase

Probab=97.10  E-value=0.0015  Score=67.08  Aligned_cols=47  Identities=15%  Similarity=0.163  Sum_probs=41.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ++.++||+||||.|+.+.+++++.+ .+|+.||+++++++.|++....
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~  137 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPD  137 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhh
Confidence            4567999999999999999998744 5899999999999999998754

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.04  E-value=0.0014  Score=65.72  Aligned_cols=52  Identities=19%  Similarity=0.230  Sum_probs=45.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      -.|..|||+|||.|.++..+|+....+|.+|+.|+ |.++|++.++.+.+.+|
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~r  227 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADR  227 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccce
Confidence            45778999999999999999986345899999875 99999999999988775

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.02  E-value=0.00078  Score=64.76  Aligned_cols=45  Identities=18%  Similarity=0.445  Sum_probs=41.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+..+|||||-.|.+++.+|+..|+ .|.|+||.+..+..|+++++
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence            4568999999999999999999776 69999999999999999875

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.99  E-value=0.0021  Score=63.80  Aligned_cols=62  Identities=11%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +.+..+++..+   -++|||||++.|.-++++|+.  .+.+|+++|.+++..+.|++..+++|+.++
T Consensus        69 ~lL~~l~~~~~---ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~  132 (247)
T PLN02589         69 QFLNMLLKLIN---AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHK  132 (247)
T ss_pred             HHHHHHHHHhC---CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCc
Confidence            44445554433   458999999999999999975  367999999999999999999999998764

>TIGR00417 speE spermidine synthase

Probab=96.99  E-value=0.0028  Score=64.20  Aligned_cols=46  Identities=20%  Similarity=0.204  Sum_probs=40.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ...+|||||||+|.++..++++. ..+|+++|+++++++.|++....
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~  118 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPS  118 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHh
Confidence            34599999999999999988864 46899999999999999998754

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.91  E-value=0.0011  Score=68.62  Aligned_cols=63  Identities=24%  Similarity=0.403  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--------cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--------TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--------~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ....+.+++.+...++.+|||-+||+|++...+.+.        ...+++|+|+++.++..|+-+..-.|.
T Consensus        32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~  102 (311)
T PF02384_consen   32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI  102 (311)
T ss_dssp             HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence            345557777788888999999999999999888762        467999999999999999887755543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=96.90  E-value=0.0013  Score=64.22  Aligned_cols=48  Identities=35%  Similarity=0.560  Sum_probs=45.2

Q ss_pred             CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          552 HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       552 ~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      -.+||||||.|.+.+.+|++ +...++||++...-+..|.+++.+.++.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~   98 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK   98 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC
Confidence            47999999999999999998 7789999999999999999999999983

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.88  E-value=0.002  Score=64.96  Aligned_cols=58  Identities=21%  Similarity=0.325  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+..+.|++.+++.+++.|||||+|.|.++..+++. +.+|++|++++...+..+++..
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~   73 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA   73 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh
Confidence            456678999999999999999999999999999996 6999999999999999988754

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=96.84  E-value=0.0035  Score=66.09  Aligned_cols=49  Identities=27%  Similarity=0.373  Sum_probs=46.6

Q ss_pred             CCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      |++|||+-|=||++++++|.. |+ +||+||+|...++.|+++++-+|++.
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~  267 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDG  267 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999994 88 99999999999999999999999864

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=96.80  E-value=0.0027  Score=60.21  Aligned_cols=51  Identities=18%  Similarity=0.311  Sum_probs=42.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|.+|||+-||+|.+++.+..+...+|+.||.|++.++..+++++..++++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~   92 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLED   92 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GG
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCc
Confidence            688999999999999999998733599999999999999999999988764

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.0036  Score=59.07  Aligned_cols=59  Identities=25%  Similarity=0.441  Sum_probs=49.2

Q ss_pred             HHHHHHHHcc--CCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          538 KHSLQIEKAR--VSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       538 ~~~~l~~~l~--l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +...+++.|.  ++||.+.||+|+|+|.++..++.-   .|..++||+.=++.++++++++.+-
T Consensus        68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~  131 (237)
T KOG1661|consen   68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD  131 (237)
T ss_pred             HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence            4446677777  899999999999999999888865   3455689999999999999998653

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.79  E-value=0.002  Score=64.49  Aligned_cols=93  Identities=20%  Similarity=0.288  Sum_probs=58.8

Q ss_pred             hHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHh
Q 036521          491 LAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVR  570 (602)
Q Consensus       491 ~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~  570 (602)
                      .....+.|++||....+.-..-    ...|.=+|      |.... +.+..++-.+-.++++.+||+|||-|+-.+-.-+
T Consensus        69 ~~~~~~~Va~HYN~~~e~g~e~----Rq~S~Ii~------lRnfN-NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~k  137 (389)
T KOG1975|consen   69 NESKSSEVAEHYNERTEVGREK----RQRSPIIF------LRNFN-NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDK  137 (389)
T ss_pred             ccchhHHHHHHHHHHHHHhHhh----hccCceee------hhhhh-HHHHHHHHHHHhccccccceeccCCcccHhHhhh
Confidence            3444778999997654433211    11222222      11111 1122222233357899999999999998877665


Q ss_pred             ccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521          571 QTG-CNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       571 ~~g-~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      . | ..++||||++..+++|++|.++
T Consensus       138 A-gI~~~igiDIAevSI~qa~~RYrd  162 (389)
T KOG1975|consen  138 A-GIGEYIGIDIAEVSINQARKRYRD  162 (389)
T ss_pred             h-cccceEeeehhhccHHHHHHHHHH
Confidence            3 4 4899999999999999999875

>PRK01581 speE spermidine synthase; Validated

Probab=96.74  E-value=0.0052  Score=63.80  Aligned_cols=42  Identities=21%  Similarity=0.187  Sum_probs=37.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~  591 (602)
                      ...+||+||||.|..+..+.+.. ..+|+.||+++++++.|++
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~  192 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN  192 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence            34599999999999999888863 3699999999999999996

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.71  E-value=0.0039  Score=68.78  Aligned_cols=52  Identities=19%  Similarity=0.266  Sum_probs=46.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..+..+||||||.|.++..+|++ +...++|||++..-+..|.+++.+.|+.+
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N  398 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN  398 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe
Confidence            34668999999999999999998 67899999999999999999999988864

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.69  E-value=0.0055  Score=62.06  Aligned_cols=66  Identities=15%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHccCCC-----CCeEEEEecCchHH-HHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc-CCCCC
Q 036521          536 MRKHSLQIEKARVSK-----GHGVLEIGCGWGTF-AIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA-GLQVT  601 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~-----g~~vLDiGcG~G~~-~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~-gl~~~  601 (602)
                      .+.++++.+.|....     .-++||||||.-.+ .+..++.+|++++|.|+++..++.|+++++.+ +|+++
T Consensus        83 ~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~  155 (299)
T PF05971_consen   83 LNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESR  155 (299)
T ss_dssp             HHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTT
T ss_pred             HHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccc
Confidence            345555555554322     45899999998766 44445558999999999999999999999999 88764

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.64  E-value=0.0032  Score=64.51  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSA  583 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~  583 (602)
                      +.+|+++|||||++|+.+..+.++ |++|++||.++
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~  243 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP  243 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh
Confidence            468999999999999999999996 88999999664

>PRK03612 spermidine synthase; Provisional

Probab=96.61  E-value=0.0037  Score=69.26  Aligned_cols=44  Identities=23%  Similarity=0.224  Sum_probs=39.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~  592 (602)
                      ++.++|||||||.|..+..++++.+ .+|++||+++++++.|+++
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~  340 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS  340 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC
Confidence            4567999999999999999998644 6999999999999999983

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.54  E-value=0.014  Score=54.02  Aligned_cols=48  Identities=21%  Similarity=0.265  Sum_probs=41.9

Q ss_pred             CCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      -.-+||||||+|..+-.+++.  .++...++||+++.++-..+.++.++.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~   93 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV   93 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC
Confidence            457999999999999999987  456788999999999999998877664

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.53  E-value=0.0022  Score=60.80  Aligned_cols=48  Identities=19%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             HHHHHHHHHcc-CCCC--CeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHH
Q 036521          537 RKHSLQIEKAR-VSKG--HGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAE  584 (602)
Q Consensus       537 ~~~~~l~~~l~-l~~g--~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~  584 (602)
                      -|+..+.++.+ ++++  .+|||+||+.|+++..+.++.  .++|+|||+.+.
T Consensus         7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            46778888888 6664  899999999999999999974  489999999865

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.50  E-value=0.009  Score=60.90  Aligned_cols=59  Identities=12%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +++.+++.+.+++|..++|.-||.|+.+..++++. .++|+|+|.+++.++.|+++.+..
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~   67 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF   67 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc
Confidence            45678899999999999999999999999999873 589999999999999999987653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK10742 putative methyltransferase; Provisional

Probab=96.43  E-value=0.0087  Score=58.80  Aligned_cols=56  Identities=11%  Similarity=0.138  Sum_probs=51.7

Q ss_pred             HHHHHHccCCCCC--eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          540 SLQIEKARVSKGH--GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       540 ~~l~~~l~l~~g~--~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +.+++.+++++|.  +|||+-+|.|..++.+|.. ||+|++|+-|+......++..+.+
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra  133 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARG  133 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHh
Confidence            5788999999998  9999999999999999996 999999999999999999888774

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.38  E-value=0.011  Score=57.96  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +..|+..|++.||.+|||-|+|.|.++.++++.  +-.+++..|+-+.-.+.|++..++.|+.+
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~  157 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGD  157 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCc
Confidence            346888999999999999999999999999987  34699999999999999999999998764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.35  E-value=0.011  Score=68.08  Aligned_cols=60  Identities=20%  Similarity=0.322  Sum_probs=50.3

Q ss_pred             HHHHHccC-CCCCeEEEEecCchHHHHHHHhc-------------------------------------------cCCEE
Q 036521          541 LQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQ-------------------------------------------TGCNY  576 (602)
Q Consensus       541 ~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~-------------------------------------------~g~~v  576 (602)
                      .++...+. +++..++|-+||.|.+.+.+|..                                           ...++
T Consensus       180 a~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i  259 (702)
T PRK11783        180 AILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKF  259 (702)
T ss_pred             HHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceE
Confidence            45566665 67889999999999999998762                                           02379


Q ss_pred             EEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          577 TGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       577 ~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|+|+++++++.|+++++.+|+.+
T Consensus       260 ~G~Did~~av~~A~~N~~~~g~~~  283 (702)
T PRK11783        260 YGSDIDPRVIQAARKNARRAGVAE  283 (702)
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999999875

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.34  E-value=0.049  Score=60.22  Aligned_cols=124  Identities=14%  Similarity=0.031  Sum_probs=72.3

Q ss_pred             CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHh-cCccccCCCCcEEEecCCcHhHHHH
Q 036521           61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRN-HHLLQLFGRPQWLTVRSRSHSYVNK  139 (602)
Q Consensus        61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~-~g~~~~~~~~~~~~~~gG~~~l~~~  139 (602)
                      .+++.|+.||+.++.+...|. .    +.+++++..+.-.+.....++.+|+.. +++-..  .+..++.-+-..+++.+
T Consensus       159 ~Ld~~tI~d~f~~~Ff~t~Fw-~----~w~t~FaF~~whSA~E~rry~~rf~~~~~~l~~~--s~l~ft~ynqyeSLV~P  231 (576)
T PRK13977        159 KLDDKTIEDWFSPEFFETNFW-Y----YWRTMFAFEKWHSALEMRRYMHRFIHHIGGLPDL--SGLKFTKYNQYESLVLP  231 (576)
T ss_pred             HhCCcCHHHHHhhcCchhHHH-H----HHHHHHCCchhhHHHHHHHHHHHHHHhhccCCcc--ccccCCCCCchhHHHHH
Confidence            458899999999976655433 3    444445555433222233344444332 121111  11112222234689999


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEec-CC--e-E-EEEe-CCC--c---EEecCEEEEecChHHH
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQY-DE--G-R-TEVR-GDG--F---QGFYDGCIMAVHAPDA  191 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~-~~--g-v-~v~~-~~g--~---~~~ad~VI~A~p~~~a  191 (602)
                      |.+.|+++|++|+++++|++|..+ ++  + | .|.. .+|  +   ....|.||+|+=.-..
T Consensus       232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~  294 (576)
T PRK13977        232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE  294 (576)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence            999999999999999999999875 22  2 2 2222 222  2   2368999999744333

>KOG2730 consensus Methylase [General function prediction only]

Probab=96.33  E-value=0.0043  Score=58.92  Aligned_cols=50  Identities=18%  Similarity=0.258  Sum_probs=46.2

Q ss_pred             CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      -..|+|.-||.|+.++..|.+ ++.|++||++|.-++-|+++++-.|+.+|
T Consensus        95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~r  144 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDR  144 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCce
Confidence            458999999999999999985 99999999999999999999999998874

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.27  E-value=0.022  Score=53.60  Aligned_cols=64  Identities=14%  Similarity=0.193  Sum_probs=53.1

Q ss_pred             HHHHHHHHccC--CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          538 KHSLQIEKARV--SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       538 ~~~~l~~~l~l--~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      ..+.+...+..  -+|.++||+-+|+|.+++.++.+...+|+.||.+.+.+...+++++..+++.+
T Consensus        29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~   94 (187)
T COG0742          29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGE   94 (187)
T ss_pred             HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccc
Confidence            33455555543  36889999999999999999998556999999999999999999999886543

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.26  E-value=0.013  Score=63.37  Aligned_cols=51  Identities=16%  Similarity=0.288  Sum_probs=41.0

Q ss_pred             CCeEEEEecCchHHHHHHHhcc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQT-----GCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~-----g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +..|||||||+|-++..+++..     ..+|++|+-|+......+++++..+++++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~  242 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDK  242 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTT
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCe
Confidence            5689999999999987776531     25999999999999888999888888654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.26  E-value=0.026  Score=58.15  Aligned_cols=86  Identities=16%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             hhhc-cchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-----cC
Q 036521          500 YHYD-LSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-----TG  573 (602)
Q Consensus       500 ~~Yd-~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-----~g  573 (602)
                      -+|| .+.++|+....-     +.||...++  .+--.+....|++.+  .++..|+|+|||.|.-+..+.+.     ..
T Consensus        34 ~~YD~~Gs~LFe~It~l-----pEYYptr~E--~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~  104 (319)
T TIGR03439        34 LLYDDEGLKLFEEITYS-----PEYYLTNDE--IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKS  104 (319)
T ss_pred             hhhcchHHHHHHHHHcC-----CccCChHHH--HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCC
Confidence            3575 678888887632     345532111  111123334455554  47779999999999986655443     24


Q ss_pred             CEEEEEcCCHHHHHHHHHHHH
Q 036521          574 CNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       574 ~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ++.++||+|.++|+.+.++++
T Consensus       105 ~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439       105 VDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             ceEEEEECCHHHHHHHHHhhh
Confidence            789999999999999999987

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=96.25  E-value=0.016  Score=58.63  Aligned_cols=50  Identities=24%  Similarity=0.369  Sum_probs=43.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .|++|||+-|=+|+++++++. .|+ +|++||.|...++.|+++++.+|++.
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~  173 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDL  173 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred             CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence            588999999999999999888 476 79999999999999999999999864

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.23  E-value=0.013  Score=61.08  Aligned_cols=60  Identities=20%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-----------------------------------------EEEE
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-----------------------------------------NYTG  578 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-----------------------------------------~v~g  578 (602)
                      ..|+...+-+++..++|=-||.|.+++.+|.. +.                                         .++|
T Consensus       181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G  259 (381)
T COG0116         181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG  259 (381)
T ss_pred             HHHHHHcCCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence            35677778888889999999999999999985 32                                         3779


Q ss_pred             EcCCHHHHHHHHHHHHHcCCCC
Q 036521          579 ITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       579 id~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|+++.+++.|+.+++++|+.+
T Consensus       260 ~Did~r~i~~Ak~NA~~AGv~d  281 (381)
T COG0116         260 SDIDPRHIEGAKANARAAGVGD  281 (381)
T ss_pred             ecCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999999986

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.21  E-value=0.032  Score=58.61  Aligned_cols=82  Identities=16%  Similarity=0.027  Sum_probs=66.9

Q ss_pred             CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEec-ChHHHHhhccCCCC
Q 036521          123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAV-HAPDALRILGNQST  200 (602)
Q Consensus       123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~-p~~~a~~ll~~~~~  200 (602)
                      .+.|.-+.|||.++..++++.+++.|++|.+++.|.+|.-+++. +-|...+|+.+.++.||.-+ |-++..+|++....
T Consensus       253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~L  332 (561)
T KOG4254|consen  253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEAL  332 (561)
T ss_pred             CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccC
Confidence            34577789999999999999999999999999999999887643 46778899888887777755 55566699987677


Q ss_pred             HHHH
Q 036521          201 FEEK  204 (602)
Q Consensus       201 ~~~~  204 (602)
                      |++.
T Consensus       333 Peef  336 (561)
T KOG4254|consen  333 PEEF  336 (561)
T ss_pred             Cchh
Confidence            7664

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.21  E-value=0.0093  Score=61.60  Aligned_cols=58  Identities=21%  Similarity=0.378  Sum_probs=50.3

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .+++.  .++|.+|||+=+|-|.+++.+|++ |+. |+++|++|..+++.+++++.++++++
T Consensus       181 Rva~~--v~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~~~  239 (341)
T COG2520         181 RVAEL--VKEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVEGR  239 (341)
T ss_pred             HHHhh--hcCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCccce
Confidence            34444  346999999999999999999996 665 99999999999999999999998764

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.20  E-value=0.014  Score=63.56  Aligned_cols=54  Identities=13%  Similarity=0.164  Sum_probs=49.2

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++++|++|||++||.|+-+.++|...  ...|+++|+|+.-++..++++++.|+.+
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n  165 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN  165 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe
Confidence            77899999999999999999999873  3589999999999999999999999864

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.19  E-value=0.01  Score=56.60  Aligned_cols=50  Identities=24%  Similarity=0.256  Sum_probs=43.9

Q ss_pred             CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+|||||||+|..+.++|++ +...-.-.|++++.+.-.+..+.+.++++
T Consensus        26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N   76 (204)
T PF06080_consen   26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN   76 (204)
T ss_pred             CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc
Confidence            335999999999999999998 67888899999999988898888888764

The function of this family is unknown.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.16  E-value=0.0062  Score=63.23  Aligned_cols=49  Identities=22%  Similarity=0.287  Sum_probs=44.6

Q ss_pred             eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          553 GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       553 ~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .|||||.|+|.++..+++..+-.||+++.=..|.+.|++-..+.|.+++
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~Sdk  117 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDK  117 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccc
Confidence            6999999999999999886445899999999999999999999998874

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=95.90  E-value=0.051  Score=57.55  Aligned_cols=235  Identities=12%  Similarity=0.074  Sum_probs=129.4

Q ss_pred             CCHHHHH---HhcCCCHHHHHHHHHHHHhhhcCCChhhHH-----hhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhH
Q 036521           65 ETLGQFI---KSRGYSELFQKAYLVPICGSIWSCPSEGIM-----SFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSY  136 (602)
Q Consensus        65 ~s~~~~l---~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~-----~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l  136 (602)
                      .++.+|.   .+ .+++...+.++.|-..=+|+++|.++.     .+|...  .  ...+..  .+.-|.++ ++|...+
T Consensus       129 ~~~~e~~d~~~~-~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~--~--~d~~yf--~d~~q~~P-~~Gyt~~  200 (377)
T TIGR00031       129 EELQEIADPDIQ-LLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVL--S--EDSSYF--PDRYQGLP-KGGYTKL  200 (377)
T ss_pred             CCHHHHHHHHHH-HHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEe--c--CCCCcc--cccccccc-cccHHHH
Confidence            3455554   66 489999999999999999999998862     223221  0  000000  12223444 5668889


Q ss_pred             HHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCcccccee
Q 036521          137 VNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSD  216 (602)
Q Consensus       137 ~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~  216 (602)
                      .++|++.-   +.+|+||+.+..+...++.|.+.  ++ .+. ++||.+.|.+..-.           ..++.++|....
T Consensus       201 ~~~ml~~~---~i~v~l~~~~~~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f~-----------~~~g~L~yrsl~  262 (377)
T TIGR00031       201 FEKMLDHP---LIDVKLNCHINLLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLFG-----------YRFGALQYRSLK  262 (377)
T ss_pred             HHHHHhcC---CCEEEeCCccceeeccccceeec--cc-ccc-CcEEEecCchHHHh-----------hccCcccceeEE
Confidence            99998774   56999999888877544435442  22 233 88999877765443           456778887664


Q ss_pred             EEEe-cCCCCCCCCCCcccccccccCCCCCeEEEEeccccccCCCCCCCCCeEEEcCCCCCCcc-eEEEEEccCCCCChh
Q 036521          217 IFLH-RDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNN-TLLKWSTGHPVPSVA  294 (602)
Q Consensus       217 ~vl~-~d~~l~p~~~~~w~s~n~~~~~~~~~~~t~~~~~~~~l~~~~~~~~v~~tl~p~~~p~~-~l~r~~~~~p~~~~~  294 (602)
                      .-.. .+...    ...++-.|++ ..-+...++.+    .+++.......+.   .. .-|.. ....+.+.-|+++..
T Consensus       263 f~~e~~~~~~----~q~~~~vnyp-~~~~~tRI~e~----k~f~~~~~~~t~i---~~-E~~~~~~~~~~~pyYpi~~~~  329 (377)
T TIGR00031       263 FEWERHEFKN----FQGYAVVNFP-LNVPITRIVEY----KHLTYVGSKQTIV---SK-EYPGEWKVGDPEPYYPVNDNK  329 (377)
T ss_pred             EEEEEecccc----CCCCeEEEcC-CCCCcceEEee----ecCCCCCCCCeEE---Ee-ecchhhcCCCceeeeeccCHH
Confidence            4322 23221    1112223443 11112222222    1111100001111   00 00110 001113344666666


Q ss_pred             HHHHHHHHHhhc-CCCCeEEeccccC--CCCChhHHHHHHHHHHHhc
Q 036521          295 ASKASLELDHIQ-GKRGIWFCEAYQG--YGFHEDGLKAGMIAAHGVL  338 (602)
Q Consensus       295 ~~~~~~~l~~lq-g~~gl~~aG~~~g--~g~~E~av~SG~~aA~~ll  338 (602)
                      ..+..++...+. ...+++++|=+-.  +=-|++||.+|+.+|++++
T Consensus       330 ~~~~~~~y~~la~~~~~v~~~GRlg~y~Y~nMD~~i~~al~~~~~~~  376 (377)
T TIGR00031       330 NMALFKKYLELASREDNLILLGRLAEYQYYDMDQAILAALYKAEQLL  376 (377)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeeeeeEeEeecHHHHHHHHHHHHHHhh
Confidence            666666665553 4579999998643  2228999999999999864

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.82  E-value=0.12  Score=55.68  Aligned_cols=140  Identities=16%  Similarity=0.094  Sum_probs=78.7

Q ss_pred             HHHHHhhHHHHHHHHhhc-CCCC-CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhH----HHHHHHH
Q 036521           39 REIMKFKDDVLCYLEELE-NNPD-IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSA----FSILSFY  112 (602)
Q Consensus        39 ~~i~rf~~~~~~~l~~~~-~~~~-~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~----~~~l~~~  112 (602)
                      +.+++|.+.+..+..... .... .....|+.+++++.++++...+.+...+  +++..  ++-..-|+    ..+..|+
T Consensus       138 R~lmkFl~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai--aL~~~--~~~~~~p~~~~l~ri~~yl  213 (438)
T PF00996_consen  138 RRLMKFLKFVANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAI--ALSLD--DSYLTEPAREGLERIKLYL  213 (438)
T ss_dssp             HHHHHHHHHHHHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT--S-SSS--SGGGGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhh--hhccC--cccccccHHHHHHHHHHHH
Confidence            456677776665532211 1111 2346899999999999988776543322  22222  22112222    2233444


Q ss_pred             HhcCccccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEE-EeCCCcEEecCEEEEe
Q 036521          113 RNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTE-VRGDGFQGFYDGCIMA  185 (602)
Q Consensus       113 ~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v-~~~~g~~~~ad~VI~A  185 (602)
                      ..-|-.  .++|.+++.= |.++|++..+....=.|+...|+++|.+|..+++|..+ +..+|+++.+++||..
T Consensus       214 ~Slgry--G~sPfLyP~Y-G~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d  284 (438)
T PF00996_consen  214 SSLGRY--GKSPFLYPLY-GLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD  284 (438)
T ss_dssp             HHHCCC--SSSSEEEETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred             HHHhcc--CCCCEEEEcc-CCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence            433311  2445665554 68899987776554459999999999999886655432 2347878999999954

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR00275 flavoprotein, HI0933 family

Probab=95.69  E-value=0.065  Score=57.54  Aligned_cols=85  Identities=18%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             HHHHHHHHHhcCcc-ccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEE
Q 036521          105 AFSILSFYRNHHLL-QLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCI  183 (602)
Q Consensus       105 ~~~~l~~~~~~g~~-~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI  183 (602)
                      ...+++++...|+. .....++.++..+....+.+.+.+.+.+.|.+|+++++|++|.++++++.|.+. ++.+.+|.||
T Consensus        75 ~~d~~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~-~~~i~ad~VI  153 (400)
T TIGR00275        75 NKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETS-GGEYEADKVI  153 (400)
T ss_pred             HHHHHHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEEC-CcEEEcCEEE
Confidence            33455666666642 222344566666677889999999998889999999999999887777877764 4578999999


Q ss_pred             EecChHH
Q 036521          184 MAVHAPD  190 (602)
Q Consensus       184 ~A~p~~~  190 (602)
                      +|+....
T Consensus       154 lAtG~~s  160 (400)
T TIGR00275       154 LATGGLS  160 (400)
T ss_pred             ECCCCcc
Confidence            9997644

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.64  E-value=0.023  Score=54.43  Aligned_cols=52  Identities=23%  Similarity=0.240  Sum_probs=38.2

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ..++.+.+++..   +.+|+++++|++|.+.+++|.|++.+++++.||+||+|+=
T Consensus        84 v~~yl~~~~~~~---~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG  135 (203)
T PF13738_consen   84 VLDYLQEYAERF---GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATG  135 (203)
T ss_dssp             HHHHHHHHHHHT---TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---
T ss_pred             HHHHHHHHHhhc---CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeee
Confidence            334555555555   7789999999999999999999999887889999999985

...

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=95.55  E-value=0.026  Score=58.91  Aligned_cols=69  Identities=22%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             EEEecCC---cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecChHHHHhhcc
Q 036521          126 WLTVRSR---SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHAPDALRILG  196 (602)
Q Consensus       126 ~~~~~gG---~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~~~a~~ll~  196 (602)
                      .+...+|   ...+.+.|.+.+.+.|.+|+.+++|++|..++++|+ |.+.+|+ +.+|+||+|+-+.. ..++.
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~  208 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLP  208 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHH
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeee
Confidence            4455556   788999999999888999999999999999999998 9999996 99999999985543 33444

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.51  E-value=0.035  Score=55.08  Aligned_cols=51  Identities=27%  Similarity=0.349  Sum_probs=42.3

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~  591 (602)
                      ..+.+.....+..+|||||+|.|.++..++++ ++.+++..|+ |+.++.+++
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~  141 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE  141 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc
Confidence            45566677777789999999999999999988 7899999998 888888877

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.37  E-value=0.062  Score=54.47  Aligned_cols=61  Identities=23%  Similarity=0.149  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      .+.+..+-..+.--.-.+|||+|||.|..+..+.+..  -.++++||.|+.|++.++..++..
T Consensus        19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            3444444444433233599999999998665544432  248999999999999999877543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=0.034  Score=49.46  Aligned_cols=64  Identities=17%  Similarity=0.271  Sum_probs=52.7

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +.++.++..+.-.+..+.+|+|+|-|.+...+|+. | ...+|+++++-.+.++|-++-.+|+..+
T Consensus        59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~  123 (199)
T KOG4058|consen   59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKS  123 (199)
T ss_pred             HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccc
Confidence            34456677776666558999999999999998885 6 6899999999999999999988887643

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=95.19  E-value=0.083  Score=53.81  Aligned_cols=60  Identities=15%  Similarity=0.127  Sum_probs=52.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .....+..++|++|||++++.|+-+.++|+..  ...|++.|+++.-++..++++++.|+..
T Consensus        76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~  137 (283)
T PF01189_consen   76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN  137 (283)
T ss_dssp             HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS
T ss_pred             cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce
Confidence            44566788999999999999999999999984  3799999999999999999999998764

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.14  E-value=0.019  Score=53.89  Aligned_cols=46  Identities=15%  Similarity=0.433  Sum_probs=41.7

Q ss_pred             CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          552 HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       552 ~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      -.+.|||||.|++.+.++.. +.--+.|++|-..--++.++|+++.+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR  108 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR  108 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence            46899999999999999998 67789999999999999999998765

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=94.86  E-value=0.089  Score=55.38  Aligned_cols=60  Identities=17%  Similarity=0.207  Sum_probs=53.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc---CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT---GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~---g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .....++.++|++|||+..+.|+=+.++|+..   |..|+++|+|+.=++..++++++.|+.+
T Consensus       147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n  209 (355)
T COG0144         147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN  209 (355)
T ss_pred             HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence            34567889999999999999999999999872   4678999999999999999999999874

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=94.83  E-value=0.095  Score=55.40  Aligned_cols=49  Identities=10%  Similarity=0.082  Sum_probs=43.8

Q ss_pred             CCeEEEEecCchHHHHHHHhc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~-~g-~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +-+|||+.||+|..++.++.+ .| .+|+++|+|++.++.++++++.++++
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~   95 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE   95 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            358999999999999999987 24 48999999999999999999988765

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK11524 putative methyltransferase; Provisional

Probab=94.70  E-value=0.1  Score=53.29  Aligned_cols=58  Identities=19%  Similarity=0.150  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ...++.+++..- .+|+.|||--||+|..++.+.+ .|-+.+|+|++++-++.|++|+..
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence            345556665553 6899999999999999987655 699999999999999999999753

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=94.65  E-value=0.15  Score=48.34  Aligned_cols=48  Identities=25%  Similarity=0.304  Sum_probs=42.9

Q ss_pred             eEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          553 GVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       553 ~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +++|||+|.|..++-+|=- +..+|+-+|-+..-+.+.+.-+.+.||++
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n   99 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN   99 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC
Confidence            8999999999999888765 57899999999999999999999999874

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=94.57  E-value=0.12  Score=47.68  Aligned_cols=50  Identities=24%  Similarity=0.357  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhcCCCeE-EeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          136 YVNKVIALLESLGCQI-KTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       136 l~~~la~~l~~~g~~v-~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ..+.+.+.+ ..+.+| +...+|+.|.+.++++.|.+.+|..+.||+||+||
T Consensus       103 ~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~  153 (156)
T PF13454_consen  103 RFDRLLARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLAT  153 (156)
T ss_pred             HHHHHHHhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECC
Confidence            345555555 224454 56789999999999999999999889999999997

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=94.53  E-value=0.07  Score=59.45  Aligned_cols=48  Identities=17%  Similarity=0.232  Sum_probs=40.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcc---------CCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQT---------GCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~---------g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      .+.+|||.|||+|.+...++++.         ..+++|+|+++..++.|+.++...+
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            34699999999999999888752         1578999999999999999887665

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.53  E-value=0.05  Score=52.79  Aligned_cols=53  Identities=23%  Similarity=0.331  Sum_probs=43.6

Q ss_pred             HHHHHHHHHccCC-CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHH
Q 036521          537 RKHSLQIEKARVS-KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYA  589 (602)
Q Consensus       537 ~~~~~l~~~l~l~-~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a  589 (602)
                      -|+...++...+. +|..+||||+-||+++..+.++...+|++||....|+..-
T Consensus        65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k  118 (245)
T COG1189          65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK  118 (245)
T ss_pred             HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh
Confidence            3566677777775 5789999999999999999997345899999999888654

>PRK13699 putative methylase; Provisional

Probab=94.45  E-value=0.14  Score=50.29  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=46.9

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      .++.+++.. -.+|+.|||-=||+|..++.+.+ .|-+.+|+|++++-.+.|.+|+++.
T Consensus       152 l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        152 SLQPLIESF-THPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Confidence            444555543 36899999999999999987665 6999999999999999999998764

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=94.41  E-value=0.089  Score=56.03  Aligned_cols=56  Identities=14%  Similarity=0.073  Sum_probs=48.7

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ...+...|++.+.+ |.+|+.+++|++|+.++++|.|.+.+|..+.+|+||+|+-+.
T Consensus       134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~  189 (381)
T TIGR03197       134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQ  189 (381)
T ss_pred             hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcc
Confidence            36788899888887 999999999999999888899988888668999999998654

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=94.41  E-value=0.12  Score=49.90  Aligned_cols=50  Identities=22%  Similarity=0.268  Sum_probs=44.9

Q ss_pred             CCeEEEEecCchHHHHHHH-hccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVV-RQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la-~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+++|||+|.|..++-+| -..+.+||=||-...=+.+.++-.++.||++
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n  118 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN  118 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC
Confidence            5799999999999999988 3367789999999999999999999999874

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=94.26  E-value=0.24  Score=53.11  Aligned_cols=64  Identities=14%  Similarity=0.105  Sum_probs=51.2

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcE-EecCEEEEec--ChHHHHhhcc
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQ-GFYDGCIMAV--HAPDALRILG  196 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~-~~ad~VI~A~--p~~~a~~ll~  196 (602)
                      ...+..++++.+.++|.+|++|++|+.|++.++|+ .+.+.+|++ ++|+.||.+.  -++..+++..
T Consensus       152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g  219 (429)
T COG0579         152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAG  219 (429)
T ss_pred             HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhC
Confidence            45678899999999999999999999999999864 556777765 8999999997  3444555554

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.07  E-value=0.063  Score=57.57  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHccC--CCC--CeEEEEecCchHHHHHHHhccCCEEEEEc---CCHHHHHHHHHH
Q 036521          532 KVAQMRKHSLQIEKARV--SKG--HGVLEIGCGWGTFAIEVVRQTGCNYTGIT---LSAEQLKYAEMK  592 (602)
Q Consensus       532 ~~aq~~~~~~l~~~l~l--~~g--~~vLDiGcG~G~~~~~la~~~g~~v~gid---~S~~~l~~a~~~  592 (602)
                      .......++.|.+.+.+  ..|  ..+||||||.|.++.++.++ +..+..+.   ..+.|+++|-+|
T Consensus        95 ~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR  161 (506)
T PF03141_consen   95 PHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER  161 (506)
T ss_pred             cCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc
Confidence            33344556666666655  334  36999999999999999996 65444332   334577777665

; GO: 0008168 methyltransferase activity

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=94.03  E-value=0.053  Score=52.54  Aligned_cols=42  Identities=17%  Similarity=0.394  Sum_probs=36.0

Q ss_pred             eEEEEecCchHHHHHHHhc-c--CCEEEEEcCCHHHHHHHHHHHH
Q 036521          553 GVLEIGCGWGTFAIEVVRQ-T--GCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       553 ~vLDiGcG~G~~~~~la~~-~--g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +|||||||.|....-+.+- .  +.+|.+.|.|+..++..+++..
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~  118 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG  118 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc
Confidence            7999999999999887765 3  3789999999999999887653

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=94.00  E-value=0.12  Score=50.70  Aligned_cols=51  Identities=20%  Similarity=0.483  Sum_probs=38.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+-.+|+|||||-=-++...... .++.++|+||+..+++..+.-....|..
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~  155 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP  155 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence            34569999999999999876554 5789999999999999999988776654

>PLN02823 spermine synthase

Probab=94.00  E-value=0.23  Score=51.76  Aligned_cols=44  Identities=20%  Similarity=0.263  Sum_probs=38.8

Q ss_pred             CCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHH
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ..+||.||+|.|..+.++.+.. ..+|+.||+++++++.|++...
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~  148 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLT  148 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcc
Confidence            4689999999999999988863 4689999999999999998864

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=93.96  E-value=0.15  Score=53.90  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=58.3

Q ss_pred             hccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcC
Q 036521          502 YDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITL  581 (602)
Q Consensus       502 Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~  581 (602)
                      ||+.+..|..+.+ ...|+ -.|+++.            --.+.|++.|+++||-|.+|.....-++.+. -.+|++||+
T Consensus         1 ~~~~~~~~~~~f~-~lvY~-~~WEDp~------------vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDl   65 (380)
T PF11899_consen    1 YGLLERLFTQFFR-GLVYA-QCWEDPR------------VDMEALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDL   65 (380)
T ss_pred             CchHHHHHHHhcc-ceeec-cccCCcH------------HHHHHhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeC
Confidence            6777777777665 44553 2354432            2246788999999999999988888887774 589999999


Q ss_pred             CHHHHHHHHHHHH
Q 036521          582 SAEQLKYAEMKVN  594 (602)
Q Consensus       582 S~~~l~~a~~~~~  594 (602)
                      ||.|+...+=+..
T Consensus        66 Np~Q~aLleLKlA   78 (380)
T PF11899_consen   66 NPAQNALLELKLA   78 (380)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999998876653

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=93.83  E-value=0.036  Score=57.77  Aligned_cols=53  Identities=21%  Similarity=0.426  Sum_probs=47.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .++|+.|.|+-||-|-+++-++++ +|+|++-|++++++++.+.+++...+..+
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~  299 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPS  299 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchh
Confidence            578999999999999999999996 89999999999999999999887766543

>PHA01634 hypothetical protein

Probab=93.82  E-value=0.24  Score=43.14  Aligned_cols=58  Identities=12%  Similarity=-0.011  Sum_probs=47.8

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +-...+++ .+.+|+|||.+-|..+++++-+ |+ +|++++.++...+..+++++...+-|
T Consensus        20 ~~Y~~idv-k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~D   78 (156)
T PHA01634         20 HAYGMLNV-YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICD   78 (156)
T ss_pred             HHhhheee-cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeee
Confidence            33456665 4679999999999999999997 55 89999999999999999887765433

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.77  E-value=0.15  Score=48.79  Aligned_cols=42  Identities=17%  Similarity=0.277  Sum_probs=30.3

Q ss_pred             CCCeEEEEecCchH----HHHHHHhc----c--CCEEEEEcCCHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGT----FAIEVVRQ----T--GCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       550 ~g~~vLDiGcG~G~----~~~~la~~----~--g~~v~gid~S~~~l~~a~~  591 (602)
                      +--+|+-+||++|.    +++.+.+.    .  .++|+|+|+|+..++.|++
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~   82 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA   82 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence            44699999999996    44444451    1  3699999999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.76  E-value=0.1  Score=49.92  Aligned_cols=47  Identities=17%  Similarity=0.234  Sum_probs=38.4

Q ss_pred             HHHHHHHHHccC-CCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCH
Q 036521          537 RKHSLQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSA  583 (602)
Q Consensus       537 ~~~~~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~  583 (602)
                      .|+.+|.++..+ ++|++|+|+||-.|+.+..++++.+  .+|+|||+-|
T Consensus        31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            455667777664 7789999999999999999999844  3599999976

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=93.73  E-value=0.041  Score=51.57  Aligned_cols=60  Identities=17%  Similarity=0.283  Sum_probs=50.2

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +++.+.-..-.|++|||+|+|.|-.++..|+.....|+..|+.+......+-+++.+|.+
T Consensus        69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~  128 (218)
T COG3897          69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS  128 (218)
T ss_pred             HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce
Confidence            355666566679999999999999999999863358999999999999999999888865

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.73  E-value=0.17  Score=48.65  Aligned_cols=61  Identities=15%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +..+.+..  +.+.++.||||-.|.+.+++.++. --.++..|+++.-++.|.+++++.++.++
T Consensus         7 L~~va~~V--~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~   68 (226)
T COG2384           7 LTTVANLV--KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSER   68 (226)
T ss_pred             HHHHHHHH--HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcce
Confidence            34445443  467779999999999999999973 34899999999999999999999999765

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=93.64  E-value=0.11  Score=50.81  Aligned_cols=53  Identities=21%  Similarity=0.274  Sum_probs=38.6

Q ss_pred             HHHHHHccCCCCC--eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          540 SLQIEKARVSKGH--GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       540 ~~l~~~l~l~~g~--~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      +.+++.+++++|.  +|||.-||.|.-++.+|. .||+||+++-||-.....++-.
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL  117 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGL  117 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHH
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHH
Confidence            3678888999885  899999999999999997 5999999999998877666443

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=93.62  E-value=0.34  Score=48.60  Aligned_cols=51  Identities=16%  Similarity=0.255  Sum_probs=44.7

Q ss_pred             CCeEEEEecCchHHHHHHHhcc-C--CEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQT-G--CNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~-g--~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      --+||||.||.|...+.+.++. .  .+|.-.|.|+..++.+++.+++.||++.
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i  189 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDI  189 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence            3589999999999998887763 3  5899999999999999999999999863

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.51  E-value=0.16  Score=52.46  Aligned_cols=52  Identities=31%  Similarity=0.440  Sum_probs=44.8

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +++.+++||++|+-+|+| -|.+++.+|+..|++|+++|.|++-++.|++.-.
T Consensus       159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA  211 (339)
T COG1064         159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA  211 (339)
T ss_pred             hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC
Confidence            456789999999999998 5677888888779999999999999999988643

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=93.34  E-value=0.52  Score=43.27  Aligned_cols=88  Identities=17%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             hhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEE
Q 036521          500 YHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYT  577 (602)
Q Consensus       500 ~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~  577 (602)
                      .-+|..-.|++.|++.-.+-. ++-..  .+.      ..+.+....+.+.|.-|||+|.|+|-++..+.++  ....++
T Consensus         7 ~~f~~e~~F~k~wi~~PrtVG-aI~Ps--Ss~------lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~   77 (194)
T COG3963           7 RKFDEEISFFKGWIDNPRTVG-AILPS--SSI------LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLT   77 (194)
T ss_pred             hhHHHHHHHHHHHhcCCceee-eecCC--cHH------HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceE
Confidence            345555678888887653321 12211  111      1124566777888999999999999999999886  235799


Q ss_pred             EEcCCHHHHHHHHHHHHHc
Q 036521          578 GITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       578 gid~S~~~l~~a~~~~~~~  596 (602)
                      .|+.|++-.....++....
T Consensus        78 ~iE~~~dF~~~L~~~~p~~   96 (194)
T COG3963          78 AIEYSPDFVCHLNQLYPGV   96 (194)
T ss_pred             EEEeCHHHHHHHHHhCCCc
Confidence            9999999998888775443

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.25  E-value=0.21  Score=48.56  Aligned_cols=54  Identities=26%  Similarity=0.294  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ...++.+++.. -.+|+.|||.=||.|..+..+.+ .|-+.+|+|++++-.+.|++
T Consensus       178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhh-hccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence            34555666554 47899999999999999987655 69999999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.10  E-value=0.19  Score=50.91  Aligned_cols=51  Identities=29%  Similarity=0.358  Sum_probs=44.1

Q ss_pred             HHHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+++.+++.|.+||-+|+|. |-.+...|+..|+ +|+.+|++++-++.|++
T Consensus       160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            568888999999999999995 6666666776776 89999999999999988

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.92  E-value=0.38  Score=49.65  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHccCCCC-CeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKG-HGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g-~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+.+-.++..+..-.| +.|.|+|.|-|.++..++-++|..|.+||-|....+.|++
T Consensus       138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            3344444444433333 6799999999999999999999999999999665555554

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=92.72  E-value=0.31  Score=51.68  Aligned_cols=57  Identities=23%  Similarity=0.121  Sum_probs=49.0

Q ss_pred             cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEec
Q 036521          130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~  186 (602)
                      ...+..+++.|.+.|.++|.+|+++|.|..|...++.+ .|.+.+|+++.+|+||+|+
T Consensus       169 TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~  226 (486)
T COG2509         169 TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAP  226 (486)
T ss_pred             ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEcc
Confidence            34566788999999999999999999999999887754 5567788889999999997

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=92.56  E-value=0.15  Score=47.52  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLS  582 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S  582 (602)
                      ++|+++|||+||-.|..+.-+.++  +...|.||||-
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            578999999999999999988777  45689999983

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=92.54  E-value=0.23  Score=49.10  Aligned_cols=41  Identities=15%  Similarity=0.067  Sum_probs=34.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ...++||||.|-|..+..++.. -.+|++.++|+.|....++
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~  134 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK  134 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh
Confidence            3468999999999999999985 5689999999999766554

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=92.41  E-value=0.21  Score=42.34  Aligned_cols=32  Identities=28%  Similarity=0.483  Sum_probs=27.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLS  582 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S  582 (602)
                      +-....|||||.|-+.-.|.+. |.+-.|+|+-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence            3457999999999999888885 8899999974

; GO: 0008168 methyltransferase activity

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=92.30  E-value=0.46  Score=49.23  Aligned_cols=57  Identities=23%  Similarity=0.180  Sum_probs=47.6

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEecChHH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAVHAPD  190 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~p~~~  190 (602)
                      ...+...+++.+.++|.+++.+++|++|..++++| .|.+.+| ++.||+||+|+-+..
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA  193 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence            46788888888888899999999999999887776 4666667 799999999986644

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=92.20  E-value=0.41  Score=51.17  Aligned_cols=56  Identities=16%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ...+.++|.+.+.+.|.+++++++|.++...++++.|.+.+| ++.+|+||+|+.+.
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~  203 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLM  203 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcc
Confidence            467888999888888999999999999998888888888777 69999999998654

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=92.15  E-value=0.18  Score=51.54  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +++.+++.|.++++...+|.-.|.|+.+..+.++ .+++|+|+|-++++++.|+++.+
T Consensus         8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~   65 (310)
T PF01795_consen    8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK   65 (310)
T ss_dssp             THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred             cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence            3457788888999999999999999999999987 56999999999999999988765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=92.13  E-value=0.41  Score=50.74  Aligned_cols=55  Identities=15%  Similarity=0.112  Sum_probs=45.4

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+.+.+.+.+.++|.+++.+++|++|.++++++.|.+.+| ++.+|+||+|+-+.
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~  199 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW  199 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence            45667777777667999999999999998888888877766 78999999999653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=92.06  E-value=0.28  Score=43.64  Aligned_cols=39  Identities=41%  Similarity=0.676  Sum_probs=30.6

Q ss_pred             EEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHH
Q 036521          554 VLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       554 vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~  593 (602)
                      +||+|||.|... .+++..  +..++|+|+++.+++.++...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARA   92 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence            999999999976 334332  258999999999999966554

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=91.86  E-value=0.14  Score=49.36  Aligned_cols=48  Identities=27%  Similarity=0.466  Sum_probs=41.8

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      .+...++.|.+|||.+.|-|..++.++++ |+ +|..|+.++.-++.|.-
T Consensus       127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~l  175 (287)
T COG2521         127 VELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKL  175 (287)
T ss_pred             hheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeecc
Confidence            45667788999999999999999999997 88 99999999988877653

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=91.80  E-value=0.41  Score=52.40  Aligned_cols=55  Identities=18%  Similarity=0.167  Sum_probs=44.7

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ...++..|++.+.+.|.+|+.+++|++|+. ++++.|.+.+| ++.||+||+|+-+.
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence            345778888777778999999999999985 45677888777 68999999998654

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=91.57  E-value=0.49  Score=50.88  Aligned_cols=57  Identities=19%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecChHH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHAPD  190 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~~~  190 (602)
                      ...+...+++.+.++|.+|+.+++|++|+.+++++. |.+.++ ++.+|+||+|+-+..
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            456778888888888999999999999998877764 556655 789999999997643

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=91.55  E-value=0.7  Score=46.64  Aligned_cols=60  Identities=12%  Similarity=0.080  Sum_probs=53.1

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      .++.+++.|.++++...+|.--|.|+.+..+.++.+  ++++|+|-++..++.|+++....+
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~   72 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD   72 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence            456788999999999999999999999999998843  689999999999999999986643

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=91.37  E-value=0.52  Score=51.97  Aligned_cols=55  Identities=11%  Similarity=0.022  Sum_probs=44.5

Q ss_pred             HhHHHHHHHHHhc----CC--CeEEeCCceeEEEec-CCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLES----LG--CQIKTGCEVCSVLQY-DEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~----~g--~~v~l~t~V~~i~~~-~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+...+++.+.+    +|  .+|+++++|++|++. ++.|.|.+.+| ++.||+||+|+=+.
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~  272 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGY  272 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChh
Confidence            4677888888776    67  578999999999987 44578888878 69999999998543

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.26  E-value=0.69  Score=44.75  Aligned_cols=53  Identities=21%  Similarity=0.193  Sum_probs=45.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      -..+++||||.=+|.-++..|..  .+.+|+++|++++..+.+.+..+.+|+.++
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~K  126 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHK  126 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccce
Confidence            34679999998888888877776  588999999999999999999999998754

>PRK06847 hypothetical protein; Provisional

Probab=91.21  E-value=0.62  Score=49.29  Aligned_cols=55  Identities=24%  Similarity=0.271  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      .+.+.|.+.+.+.|.+|+++++|++++.+++++.|.+.+|+++.+|.||.|.-..
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~  162 (375)
T PRK06847        108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY  162 (375)
T ss_pred             HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence            4566777776666889999999999998888888888888889999999998443

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=91.03  E-value=0.59  Score=49.43  Aligned_cols=55  Identities=15%  Similarity=0.104  Sum_probs=45.2

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+...+.+.+.+.|.+++.+++|+++.++++++.|.+++| ++.+|+||+|+-+.
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~  203 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAW  203 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcc
Confidence            34556666666667999999999999999888888888877 78999999999664

>PRK09897 hypothetical protein; Provisional

Probab=90.67  E-value=0.68  Score=51.46  Aligned_cols=53  Identities=9%  Similarity=0.131  Sum_probs=41.8

Q ss_pred             HhHHHHHHHHHhcCC--CeEEeCCceeEEEecCCeEEEEeCC-CcEEecCEEEEec
Q 036521          134 HSYVNKVIALLESLG--CQIKTGCEVCSVLQYDEGRTEVRGD-GFQGFYDGCIMAV  186 (602)
Q Consensus       134 ~~l~~~la~~l~~~g--~~v~l~t~V~~i~~~~~gv~v~~~~-g~~~~ad~VI~A~  186 (602)
                      +...+.+.+.+.+.|  .+|+.+++|++|++.++++.|++.+ |..+.||+||+|+
T Consensus       107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAt  162 (534)
T PRK09897        107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIAT  162 (534)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECC
Confidence            445566666665555  5788999999999988899988754 4578999999999

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=90.53  E-value=1.1  Score=44.72  Aligned_cols=59  Identities=20%  Similarity=0.115  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+.+.++.-.+. +..++||-||-|.|+.+..+.+.. -.+|+.|||+++.++.|++-...
T Consensus        63 ~e~l~h~~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~  122 (246)
T PF01564_consen   63 HEMLVHPPLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPE  122 (246)
T ss_dssp             HHHHHHHHHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHH
T ss_pred             HHHHhhhHhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchh
Confidence            334334333333 345799999999999999999864 36999999999999999987543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=90.40  E-value=0.48  Score=47.30  Aligned_cols=89  Identities=11%  Similarity=0.110  Sum_probs=52.2

Q ss_pred             hHHHHhhcCCCCccccc---------ccCCCCccHHHHHHHHHHHHHHHccCCCC-CeEEEEecC--chHHHHHHHhc--
Q 036521          506 NELFALFMDESMTYSCP---------IFKDEDEDLKVAQMRKHSLQIEKARVSKG-HGVLEIGCG--WGTFAIEVVRQ--  571 (602)
Q Consensus       506 ~~~y~~~~~~~~~ys~~---------~~~~~~~~l~~aq~~~~~~l~~~l~l~~g-~~vLDiGcG--~G~~~~~la~~--  571 (602)
                      ...|++|++...+|-..         .+ ........+.++.+.+..+.+--..| ...||||||  +-...-..|++  
T Consensus        15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~-P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~   93 (267)
T PF04672_consen   15 ARVYDYLLGGKDNFAVDREAAERLLAAA-PEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA   93 (267)
T ss_dssp             HHHHHHHCT-SS--HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-
T ss_pred             HHHHHHHhCCccCCHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC
Confidence            45677777766554210         00 01123444556666666666654435 579999999  44556667765  


Q ss_pred             cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          572 TGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       572 ~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+++|+-||..|--+.+++.....
T Consensus        94 P~aRVVYVD~DPvv~ah~ralL~~  117 (267)
T PF04672_consen   94 PDARVVYVDNDPVVLAHARALLAD  117 (267)
T ss_dssp             TT-EEEEEESSHHHHHCCHHHHTT
T ss_pred             CCceEEEECCCchHHHHHHhhhcC
Confidence            689999999999999999887644

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=90.30  E-value=0.86  Score=48.62  Aligned_cols=55  Identities=22%  Similarity=0.111  Sum_probs=46.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.|.+.+.+.|.+++.+++|++++.+++++.|+..+|+++.+|.||.|.=.
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~  167 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGA  167 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCC
Confidence            4567778777777789999999999999988899888888878999999999833

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=90.30  E-value=0.52  Score=45.33  Aligned_cols=42  Identities=14%  Similarity=0.152  Sum_probs=35.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ....++|||||-|.+..++-.+.--+++-+|-|-.|++.++.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~  113 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD  113 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc
Confidence            345799999999999999988632478999999999999875

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=90.26  E-value=1.2  Score=44.44  Aligned_cols=76  Identities=20%  Similarity=0.426  Sum_probs=55.5

Q ss_pred             chHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHH
Q 036521          505 SNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAE  584 (602)
Q Consensus       505 ~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~  584 (602)
                      +..+|...++. ..|+ -+|+++..+++            .+.+..|.+|.-||+|.-.+.-++++. -++|..||+++.
T Consensus        32 serlf~vlFsg-LvYp-qiwEDp~Vdme------------am~~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~a   96 (414)
T COG5379          32 SERLFGVLFSG-LVYP-QIWEDPSVDME------------AMQLGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPA   96 (414)
T ss_pred             hHHHHHHHhcc-cccc-cccCCccccHH------------HHhcCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHH
Confidence            44556554433 3453 45666555443            345668999999999999899999985 789999999999


Q ss_pred             HHHHHHHHHHH
Q 036521          585 QLKYAEMKVNE  595 (602)
Q Consensus       585 ~l~~a~~~~~~  595 (602)
                      +++..+-++..
T Consensus        97 hiAln~lklaA  107 (414)
T COG5379          97 HIALNRLKLAA  107 (414)
T ss_pred             HHHHHHHHHHH
Confidence            99988776643

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=90.18  E-value=0.64  Score=49.58  Aligned_cols=49  Identities=33%  Similarity=0.436  Sum_probs=43.2

Q ss_pred             HHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      +...+.+|.+||.+|||. |..++.+|+..|+ +|+++|.++++++.+++.
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            456778999999999998 9999999998887 699999999999998875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK06116 glutathione reductase; Validated

Probab=90.06  E-value=0.83  Score=49.83  Aligned_cols=53  Identities=21%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEec
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~  186 (602)
                      ..+.+.+.+.|.++|.+++++++|.+|+.++++ +.|.+.+|+++.+|.||+|+
T Consensus       208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~  261 (450)
T PRK06116        208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAI  261 (450)
T ss_pred             HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEee
Confidence            456778888888889999999999999987666 77777778789999999996

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=90.06  E-value=0.29  Score=45.55  Aligned_cols=47  Identities=15%  Similarity=0.255  Sum_probs=41.1

Q ss_pred             CeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          552 HGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       552 ~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.+-|+|.|+|-++..+|+. .-+|++|+.+|.-.+.|.++++-.|+.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~   80 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV   80 (252)
T ss_pred             hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc
Confidence            58999999999999988884 779999999999999999997655553

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=89.99  E-value=0.91  Score=48.53  Aligned_cols=63  Identities=22%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH-HHHhhcc
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP-DALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~-~a~~ll~  196 (602)
                      ..+.+.|.+.+.+.|.+|+.+++|++++++++++.|+..+|+++.+|.||.|.-.. ...+.+.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g  174 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLRELAG  174 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence            45777888887777899999999999999888998888888789999999997433 3444443

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=89.95  E-value=0.98  Score=47.88  Aligned_cols=63  Identities=13%  Similarity=0.006  Sum_probs=50.8

Q ss_pred             HhHHHHHHHHHhc-CCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH-HHhhcc
Q 036521          134 HSYVNKVIALLES-LGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD-ALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~-~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~-a~~ll~  196 (602)
                      ..+.+.|.+.+.+ .|.+++.+++|++|.+++++|+|+..+|+++.||.||.|..... ..+.+.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~  169 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLS  169 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence            4677888888766 38899999999999998889999888887899999999996543 444444

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=89.78  E-value=0.9  Score=48.79  Aligned_cols=57  Identities=21%  Similarity=0.239  Sum_probs=44.7

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC-----cEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG-----FQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g-----~~~~ad~VI~A~p~~  189 (602)
                      ...+...+.+.+.++|.+|+.+++|++|+.++++|.+.+.++     .++.+|+||+|+=+.
T Consensus       196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~  257 (410)
T PRK12409        196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG  257 (410)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence            345667788888888999999999999998888877654322     368999999999554

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=89.63  E-value=0.77  Score=52.80  Aligned_cols=56  Identities=18%  Similarity=0.126  Sum_probs=47.8

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ...+..++.+.+.+ |.+|+.+++|++|.+.+++|.|.+.+|..+.+|+||+|+-+.
T Consensus       407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~  462 (662)
T PRK01747        407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHD  462 (662)
T ss_pred             HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCC
Confidence            35788889888877 899999999999998888899888888667899999998654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=89.61  E-value=1  Score=48.35  Aligned_cols=63  Identities=11%  Similarity=0.033  Sum_probs=50.8

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec-ChHHHHhhcc
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV-HAPDALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~-p~~~a~~ll~  196 (602)
                      ..+.+.|.+.+.+.|.+|+.+++|+++++++++|.|+..+|+++.+|.||.|. ......+++.
T Consensus       112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg  175 (405)
T PRK05714        112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAG  175 (405)
T ss_pred             HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence            35667777777767889999999999999988999988888789999999998 3344555554

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=89.33  E-value=1.1  Score=48.07  Aligned_cols=58  Identities=14%  Similarity=-0.036  Sum_probs=46.6

Q ss_pred             CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCC--cEEecCEEEEecChH
Q 036521          131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDG--FQGFYDGCIMAVHAP  189 (602)
Q Consensus       131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g--~~~~ad~VI~A~p~~  189 (602)
                      .|+ .+.++|.+.+.++|++++.+++|.++..++++++ |.+.++  ..+.||+||+|+=+.
T Consensus       261 ~G~-RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       261 LGI-RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             cHH-HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence            355 4778899999999999999999999998888775 444554  378999999997553

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=89.24  E-value=1.3  Score=44.92  Aligned_cols=59  Identities=20%  Similarity=0.104  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+++.++.-.+-..+ .+||-||-|-|+.++.+.++. -.+++.|||.++.++.|++....
T Consensus        63 hEml~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~  122 (282)
T COG0421          63 HEMLAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPE  122 (282)
T ss_pred             HHHHHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccC
Confidence            344444443344445 599999999999999999973 36999999999999999987644

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.04  E-value=0.83  Score=36.61  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=36.7

Q ss_pred             cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC
Q 036521          130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG  174 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g  174 (602)
                      ..-...+.+.+.+.+.++|.+|++++.|.+|..++++++|+..+|
T Consensus        36 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   36 PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            334456777888888888999999999999999998877777665

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02507 glutathione reductase

Probab=89.03  E-value=1.2  Score=49.26  Aligned_cols=54  Identities=15%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.|.++|.++++++.|.+++..++++.|...+|+++.+|.||+|+.
T Consensus       244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G  297 (499)
T PLN02507        244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATG  297 (499)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeec
Confidence            456677777888889999999999999987778888777787899999999974

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=88.94  E-value=1.2  Score=48.69  Aligned_cols=54  Identities=20%  Similarity=0.074  Sum_probs=45.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      .++.+.+.+.+.++|.+|+++++|++++.+++++.++..+|+++.+|.||+|+.
T Consensus       216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G  269 (461)
T PRK05249        216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANG  269 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeec
Confidence            467778888888889999999999999987778877777777899999999964

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=88.71  E-value=1.1  Score=43.01  Aligned_cols=88  Identities=14%  Similarity=0.110  Sum_probs=47.2

Q ss_pred             cchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC---CEEEEEc
Q 036521          504 LSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG---CNYTGIT  580 (602)
Q Consensus       504 ~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g---~~v~gid  580 (602)
                      ..+.-|+.|-....-||..=|..=.-.|  | .+..++.+..+.-+..-.+.|-.||.|.+.--+.--++   ..|.|-|
T Consensus         8 ~~~~~y~DfAsG~VL~sApG~p~FPVRL--A-sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSD   84 (246)
T PF11599_consen    8 TERRDYEDFASGRVLYSAPGFPAFPVRL--A-SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASD   84 (246)
T ss_dssp             -S----CCCSTTTSS--BTTB----HHH--H-HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEE
T ss_pred             cccCChhhhcCCeEEecCCCCCCccHHH--H-HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhccc
Confidence            3344455555555555544332211111  1 22333444444434446899999999999876654333   4799999


Q ss_pred             CCHHHHHHHHHHHH
Q 036521          581 LSAEQLKYAEMKVN  594 (602)
Q Consensus       581 ~S~~~l~~a~~~~~  594 (602)
                      +++++++.|+++..
T Consensus        85 Id~~aL~lA~kNL~   98 (246)
T PF11599_consen   85 IDEDALELARKNLS   98 (246)
T ss_dssp             S-HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhh
Confidence            99999999999873

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=88.62  E-value=0.93  Score=48.79  Aligned_cols=52  Identities=15%  Similarity=0.050  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      .|.+.|.+.++  +..|+++++|++|++++++|.|+..+|+++.+|.||.|.=.
T Consensus       106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~  157 (414)
T TIGR03219       106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI  157 (414)
T ss_pred             HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence            56777877775  45789999999999988899998888888999999999733

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=88.55  E-value=1.2  Score=46.13  Aligned_cols=48  Identities=27%  Similarity=0.475  Sum_probs=40.8

Q ss_pred             HHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +...++++++||..||| .|..++.+|+..|++|+.++.|+++.+.+++
T Consensus       159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~  207 (338)
T cd08254         159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE  207 (338)
T ss_pred             hccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            34457889999999987 4888899999889999999999999988854

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=88.50  E-value=1.4  Score=46.83  Aligned_cols=53  Identities=15%  Similarity=0.145  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      .+.+.+.+.+.+.|.+++++++|.++..+++++.|...+|+++.+|.||+|+-
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G  236 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAG  236 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcC
Confidence            45566777777789999999999999987777888888888899999999974

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=88.47  E-value=0.89  Score=50.03  Aligned_cols=46  Identities=26%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             ccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          546 ARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ++..++++|+-+|||. |..++..|+..|++|+++|.+++-++++++
T Consensus       160 aG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        160 AGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4567899999999995 666777788789999999999999998876

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=88.40  E-value=1.3  Score=44.92  Aligned_cols=53  Identities=25%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      .+.+.+.+.+.+.+.++++ +.|++|...++++.|.+.+|+++.+|+||+|+=.
T Consensus        58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~  110 (300)
T TIGR01292        58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA  110 (300)
T ss_pred             HHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC
Confidence            5667777777767889999 8999999988888888877778999999999944

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=88.39  E-value=1.3  Score=48.70  Aligned_cols=55  Identities=24%  Similarity=0.254  Sum_probs=42.4

Q ss_pred             HhHHHHHHHHHhc-CCCeEEeCCceeEEEec-CCeEEEE---eCCCc--EEecCEEEEecCh
Q 036521          134 HSYVNKVIALLES-LGCQIKTGCEVCSVLQY-DEGRTEV---RGDGF--QGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~-~g~~v~l~t~V~~i~~~-~~gv~v~---~~~g~--~~~ad~VI~A~p~  188 (602)
                      ..+.+++++.+.+ .|.+|+++++|+.|+++ +++|+|.   +.+|+  ++.||.||+|+=+
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGa  245 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGG  245 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCc
Confidence            3567888887743 48999999999999988 6678775   34452  5899999999844

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=88.25  E-value=1.9  Score=46.36  Aligned_cols=82  Identities=16%  Similarity=0.155  Sum_probs=59.6

Q ss_pred             cHhHHHHHHHHHhcC-CCeEEeCCceeEEEecCCe-EEEEeC---CC--cEEecCEEEEecChHHHHhhccCCCCHHHHh
Q 036521          133 SHSYVNKVIALLESL-GCQIKTGCEVCSVLQYDEG-RTEVRG---DG--FQGFYDGCIMAVHAPDALRILGNQSTFEEKR  205 (602)
Q Consensus       133 ~~~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~g-v~v~~~---~g--~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~  205 (602)
                      ...|.+.|.+.+.+. |.+|++++.|+.|++.++| |.|...   +|  .++.|+.|++-.=. .++.|+.. ..-.|..
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG-~aL~LLqk-sgi~e~~  257 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGG-GALPLLQK-SGIPEGK  257 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCch-HhHHHHHH-cCChhhc
Confidence            457888888888766 7899999999999999887 888652   22  36899999998744 36666653 3333556


Q ss_pred             hccCcccccee
Q 036521          206 LLGAFQYVYSD  216 (602)
Q Consensus       206 ~l~~~~y~~~~  216 (602)
                      -++.||-+..+
T Consensus       258 gyggfPVsG~f  268 (488)
T PF06039_consen  258 GYGGFPVSGQF  268 (488)
T ss_pred             ccCCCcccceE
Confidence            67777766554

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=88.20  E-value=1.2  Score=49.20  Aligned_cols=57  Identities=16%  Similarity=0.185  Sum_probs=43.9

Q ss_pred             cHhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCe-EEEEe---CCCc--EEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEG-RTEVR---GDGF--QGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~g-v~v~~---~~g~--~~~ad~VI~A~p~~  189 (602)
                      ...+.+++++.+.+.| .+|+++++|++|++++++ |.|++   .+|+  ++.|++||+|+-..
T Consensus       182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~  245 (494)
T PRK05257        182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG  245 (494)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcc
Confidence            3467888888887777 599999999999987665 76653   2353  58999999998553

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.13  E-value=0.63  Score=44.93  Aligned_cols=50  Identities=22%  Similarity=0.369  Sum_probs=38.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEA-GLQ  599 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~-gl~  599 (602)
                      ++-++||||.|.--+--.+-.+ ||.+.+|.|+++..++.|+..+..+ +++
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~  129 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE  129 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh
Confidence            4568999998865444334333 8999999999999999999998776 554

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=88.01  E-value=1.5  Score=47.79  Aligned_cols=55  Identities=16%  Similarity=0.161  Sum_probs=45.5

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      .++.+.+.+.|.++|.++++++.|.+|..+++++.|...+|+++.+|.||+|+..
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~  261 (446)
T TIGR01424       207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR  261 (446)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence            4566677777888899999999999999877777777777778999999999753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=87.81  E-value=1.4  Score=44.17  Aligned_cols=40  Identities=28%  Similarity=0.297  Sum_probs=35.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAE  590 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~  590 (602)
                      ...+||-=|||-|.++..+|++ |..|.|.+.|--|+--.+
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~   95 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASN   95 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHH
Confidence            3568999999999999999996 999999999999975443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=87.79  E-value=1.5  Score=46.45  Aligned_cols=54  Identities=11%  Similarity=-0.057  Sum_probs=45.5

Q ss_pred             HhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.|.+.+.+.| .+|+.+++|+++..+++++.|++.+|+++.+|.||.|.-
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG  160 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADG  160 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCC
Confidence            357777888776666 899999999999998888988888888899999998863

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=87.76  E-value=1.6  Score=48.09  Aligned_cols=56  Identities=14%  Similarity=0.080  Sum_probs=44.1

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCC-eEEEEe---CCCc--EEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDE-GRTEVR---GDGF--QGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~-gv~v~~---~~g~--~~~ad~VI~A~p~  188 (602)
                      ...+..++++.+.++|.+|+++++|++|+++++ +|.|++   .+|+  ++.||.||+|+-.
T Consensus       177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~  238 (483)
T TIGR01320       177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGG  238 (483)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCc
Confidence            457888998888888999999999999998654 576643   2342  5899999999854

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=87.60  E-value=1.4  Score=46.22  Aligned_cols=48  Identities=25%  Similarity=0.448  Sum_probs=40.7

Q ss_pred             HHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+..+++|++||-+|||. |..++.+|+..|++|+++|.+++.++.+++
T Consensus       160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence            346788999999999975 777788888889999999999999888854

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=87.40  E-value=0.91  Score=46.18  Aligned_cols=41  Identities=15%  Similarity=0.068  Sum_probs=32.4

Q ss_pred             CeEEEEecCchHH----HHHHHhcc-----CCEEEEEcCCHHHHHHHHHH
Q 036521          552 HGVLEIGCGWGTF----AIEVVRQT-----GCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       552 ~~vLDiGcG~G~~----~~~la~~~-----g~~v~gid~S~~~l~~a~~~  592 (602)
                      -+|+..||.+|.=    |+.+.+..     ..+|+|+|||+..++.|++-
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            6999999999964    44444421     36899999999999999874

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=87.36  E-value=1.5  Score=48.02  Aligned_cols=55  Identities=11%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             HhHHHHHHHHHhcCCCe--EEeCCceeEEEecCCeEEEEeCCC--c--EEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQ--IKTGCEVCSVLQYDEGRTEVRGDG--F--QGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~--v~l~t~V~~i~~~~~gv~v~~~~g--~--~~~ad~VI~A~p~  188 (602)
                      +++.+.|.+.....+.+  |+++++|++|++.+++|.|++.++  .  +..||+||+|+=.
T Consensus       111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~  171 (461)
T PLN02172        111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGH  171 (461)
T ss_pred             HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccC
Confidence            44556665555444655  999999999999888898876532  2  3579999999853

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=87.33  E-value=1.5  Score=47.99  Aligned_cols=55  Identities=29%  Similarity=0.218  Sum_probs=44.4

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC---cEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG---FQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g---~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.|.++|.+++++++|.+|..+++++.|...+|   +.+.+|.||+|+..
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~  270 (462)
T PRK06416        213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR  270 (462)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence            45667778888888999999999999998777787766544   46889999999743

>PRK06834 hypothetical protein; Provisional

Probab=87.20  E-value=1.7  Score=47.95  Aligned_cols=52  Identities=21%  Similarity=0.089  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      .+-+.|.+.+.+.|.+|+.+++|+++++++++|.|+..+|+++.+|.||.|.
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgAD  152 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCD  152 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEec
Confidence            4555666666666889999999999999989998887777789999999997

>PRK00536 speE spermidine synthase; Provisional

Probab=86.96  E-value=2.4  Score=42.45  Aligned_cols=42  Identities=10%  Similarity=-0.137  Sum_probs=38.0

Q ss_pred             CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      -++||=||-|-|+.++.+.++ ..+|+-|||+++.++.+++-.
T Consensus        73 pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~l  114 (262)
T PRK00536         73 LKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFF  114 (262)
T ss_pred             CCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHC
Confidence            369999999999999999996 459999999999999999944

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=86.94  E-value=1.8  Score=47.46  Aligned_cols=54  Identities=17%  Similarity=0.084  Sum_probs=45.2

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.|.++|.+++++++|.+|+.+++++.|...+|+.+.+|.||+|+.
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G  271 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVG  271 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeec
Confidence            456677788888889999999999999887778877777787889999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=86.75  E-value=1.8  Score=47.22  Aligned_cols=55  Identities=20%  Similarity=0.123  Sum_probs=45.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC--cEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG--FQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g--~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.++++++.|.+|+.+++++.+...+|  +++.+|.||+|+..
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~  267 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGR  267 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCC
Confidence            45677778888888999999999999998877887776666  46899999999743

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07236 hypothetical protein; Provisional

Probab=86.74  E-value=1.6  Score=46.51  Aligned_cols=62  Identities=15%  Similarity=0.011  Sum_probs=48.0

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEe--cChHHHHhhcc
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMA--VHAPDALRILG  196 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A--~p~~~a~~ll~  196 (602)
                      ...+.+.|.+.++  +.+|+++++|+++++++++|+|+..+|+++.+|.||.|  +.+.....+++
T Consensus        99 ~~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~  162 (386)
T PRK07236         99 WNVLYRALRAAFP--AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQLLP  162 (386)
T ss_pred             HHHHHHHHHHhCC--CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCC
Confidence            4456677777774  46799999999999998899998888888999999999  45544444433

>PRK07588 hypothetical protein; Provisional

Probab=86.60  E-value=1.8  Score=46.12  Aligned_cols=52  Identities=10%  Similarity=0.050  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      .+-+.|.+.+.. +.+|+++++|++|++++++|.|++.+|+++.+|.||-|-=
T Consensus       104 ~l~~~L~~~~~~-~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG  155 (391)
T PRK07588        104 DLAAAIYTAIDG-QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG  155 (391)
T ss_pred             HHHHHHHHhhhc-CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence            455555555542 5799999999999999899999888898889998888863

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=86.47  E-value=2  Score=43.36  Aligned_cols=49  Identities=27%  Similarity=0.312  Sum_probs=30.9

Q ss_pred             CeEEEEecCchHH-HHHHHhcc--CCEEEEEcCCHHHHHHHHHHHH-HcCCCC
Q 036521          552 HGVLEIGCGWGTF-AIEVVRQT--GCNYTGITLSAEQLKYAEMKVN-EAGLQV  600 (602)
Q Consensus       552 ~~vLDiGcG~G~~-~~~la~~~--g~~v~gid~S~~~l~~a~~~~~-~~gl~~  600 (602)
                      .+|+=||||.=-+ ++.+++++  ++.|+++|++++.++.|++-++ ..||+.
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~  174 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK  174 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence            4999999995544 46677664  5789999999999999999888 455543

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=86.46  E-value=5.5  Score=41.42  Aligned_cols=67  Identities=18%  Similarity=0.175  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc---------CCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          531 LKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT---------GCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       531 l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~---------g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      +-+.-...+-.+.+.++.+..-+++|||.|.|.++..+.+..         .+++.-|++|++-.+.=+++.+...
T Consensus        58 FGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          58 FGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            444444455556666666556689999999999998877642         5799999999998888777766543

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=86.29  E-value=2.1  Score=46.40  Aligned_cols=57  Identities=16%  Similarity=0.206  Sum_probs=43.6

Q ss_pred             CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecC-Ce-E-EEEeC-CCcEEecCEEEEecC
Q 036521          131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYD-EG-R-TEVRG-DGFQGFYDGCIMAVH  187 (602)
Q Consensus       131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~-~g-v-~v~~~-~g~~~~ad~VI~A~p  187 (602)
                      ++...+++.|.+.+.+.|.+|+++++|++|..++ ++ + .|... ++..+.++.||+|+=
T Consensus       120 ~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtG  180 (432)
T TIGR02485       120 GGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAG  180 (432)
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCC
Confidence            4556788999888888899999999999998763 33 3 23332 334688999999985

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=86.27  E-value=1.8  Score=47.02  Aligned_cols=56  Identities=21%  Similarity=0.208  Sum_probs=46.1

Q ss_pred             CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc--EEecCEEEEec
Q 036521          131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF--QGFYDGCIMAV  186 (602)
Q Consensus       131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~--~~~ad~VI~A~  186 (602)
                      +--.++.+.+.+.|.+.|.+++++++|++++..++++.+..++|+  ++.+|.|++|+
T Consensus       211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAi  268 (454)
T COG1249         211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAI  268 (454)
T ss_pred             cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEcc
Confidence            334567788888887767899999999999998888888777665  68899999996

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=85.99  E-value=2  Score=44.74  Aligned_cols=49  Identities=18%  Similarity=0.147  Sum_probs=39.6

Q ss_pred             HHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      ...++++|++||-.||| .|.++..+|+..|++|++++.+++-++.|++.
T Consensus       159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~  208 (329)
T TIGR02822       159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL  208 (329)
T ss_pred             HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence            45678899999999986 45556777777899999999999988877663

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=85.87  E-value=2.6  Score=42.43  Aligned_cols=63  Identities=10%  Similarity=0.140  Sum_probs=42.2

Q ss_pred             CccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchH----HHHHHHhcc------CCEEEEEcCCHHHHHHHHH
Q 036521          528 DEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGT----FAIEVVRQT------GCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       528 ~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~----~~~~la~~~------g~~v~gid~S~~~l~~a~~  591 (602)
                      ...++.-....+..++..-.. .--+|+-+||++|.    +|+.+.+..      .++|+|+|||...|+.|++
T Consensus        75 ~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          75 PEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             cHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            344544444444444433322 34699999999995    455555542      4799999999999999986

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=85.86  E-value=2.1  Score=47.63  Aligned_cols=56  Identities=9%  Similarity=-0.069  Sum_probs=47.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+.+.+.+.+.+.|.+++++++|.+|...++++.|.+.+|+.+.+|+||+|+-+.
T Consensus       267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~  322 (515)
T TIGR03140       267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR  322 (515)
T ss_pred             HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence            45677888888777899999999999988777788888788789999999999653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=85.83  E-value=0.56  Score=46.88  Aligned_cols=38  Identities=29%  Similarity=0.329  Sum_probs=32.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQL  586 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l  586 (602)
                      -.|++|||+|||.|-..+.+..+..+.|...|.|.+-+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            36899999999999999999986338899999988766

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=85.78  E-value=2  Score=47.40  Aligned_cols=90  Identities=12%  Similarity=0.224  Sum_probs=64.7

Q ss_pred             hhccchHHHHhhcCCC---Cccc-ccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc----
Q 036521          501 HYDLSNELFALFMDES---MTYS-CPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT----  572 (602)
Q Consensus       501 ~Yd~~~~~y~~~~~~~---~~ys-~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~----  572 (602)
                      .+|...+.|++++...   ..=+ ..+|.+         +...+.|.+.+.+++..+|+|-.||+|++...+++..    
T Consensus       142 ~~d~~G~~yE~ll~~fa~~~~k~~GEfyTP---------~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~  212 (489)
T COG0286         142 DRDLFGDAYEYLLRKFAEAEGKEAGEFYTP---------REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ  212 (489)
T ss_pred             cccchhHHHHHHHHHHHHhcCCCCCccCCh---------HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc
Confidence            3466667777665431   1111 223332         4455677778777888899999999999998877652    


Q ss_pred             -CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          573 -GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       573 -g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                       .+..+|.++++..+..|+.+.--+|++
T Consensus       213 ~~~~~yGqE~~~~t~~l~~mN~~lhgi~  240 (489)
T COG0286         213 DEIFIYGQEINDTTYRLAKMNLILHGIE  240 (489)
T ss_pred             cceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence             267999999999999999998777765

>PRK07190 hypothetical protein; Provisional

Probab=85.72  E-value=2.3  Score=46.87  Aligned_cols=55  Identities=15%  Similarity=0.031  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH
Q 036521          136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD  190 (602)
Q Consensus       136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~  190 (602)
                      +-+.|.+.+.+.|.+|+.+++|++++++++++.++..+|+++.|+.||.|.=...
T Consensus       111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence            3344555566668999999999999999999888777787899999999984433

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=85.68  E-value=2.2  Score=45.12  Aligned_cols=50  Identities=22%  Similarity=0.351  Sum_probs=40.8

Q ss_pred             HHHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+...+++|++||-+||| -|.+++.+|+..|+ +|+++|.+++.++.+++
T Consensus       177 ~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~  228 (368)
T TIGR02818       177 VLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK  228 (368)
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            3455678899999999987 36667778887888 79999999999888855

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=85.55  E-value=8.7  Score=41.79  Aligned_cols=96  Identities=13%  Similarity=0.043  Sum_probs=61.2

Q ss_pred             CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHh-cCccccCCCCcEEEecCCcHhHHHH
Q 036521           61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRN-HHLLQLFGRPQWLTVRSRSHSYVNK  139 (602)
Q Consensus        61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~-~g~~~~~~~~~~~~~~gG~~~l~~~  139 (602)
                      .+++.++.||+...-|...|.     -+.+++++..+-..+.---.|+.+|+.. +++-.+  .+..++.-+-..+++.+
T Consensus       140 ~L~~~~I~d~F~~~FF~SnFW-----~~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l--~~l~~T~YNQyeSii~P  212 (500)
T PF06100_consen  140 DLGDKRIEDWFSESFFESNFW-----YMWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDL--SGLDRTKYNQYESIILP  212 (500)
T ss_pred             HhCcccHHHhcchhhhcCchh-----HhHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCc--cccccCccccHHHHHHH
Confidence            346789999987755544443     2556666666533222223455555543 222111  12233444556789999


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEec
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQY  163 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~  163 (602)
                      |...|+++|.++++++.|+.|.-+
T Consensus       213 l~~~L~~~GV~F~~~t~V~di~~~  236 (500)
T PF06100_consen  213 LIRYLKSQGVDFRFNTKVTDIDFD  236 (500)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEE
Confidence            999999999999999999999864

>PF02036 SCP2: SCP-2 sterol transfer family; InterPro: IPR003033 This domain is involved in binding sterols, and is found in proteins such as SCP2

Probab=85.25  E-value=3  Score=34.87  Aligned_cols=38  Identities=8%  Similarity=0.162  Sum_probs=26.4

Q ss_pred             CCcEEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCCh
Q 036521          397 NLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKE  436 (602)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~  436 (602)
                      .+.++|+... ..|.++ ..|.+.+.++||.|++.++|+.
T Consensus        54 ~~d~~i~~~~-~~~~~l-~~g~~~~~~a~~~gklki~Gd~   91 (102)
T PF02036_consen   54 EADVTITGSY-EDLLKL-LTGELDPMQAFMSGKLKIEGDL   91 (102)
T ss_dssp             S-SEEEEEEH-HHHHHH-HTTSS-HHHHHHTTSSEEEESH
T ss_pred             CCcEEEEEeH-HHHHHH-HcCCCCchhhhhCCcEEEEcCH
Confidence            4556666554 444454 4688999999999999999863

This domain has a 3-layer alpha/beta/alpha fold, composed of alpha/beta(3)/(crossover)/beta/(alpha)/beta. The human sterol carrier protein 2 (SCP2) is a basic protein that is believed to participate in the intracellular transport of cholesterol and various other lipids []. The Unc-24 protein of Caenorhabditis elegans contains a domain similar to part of two ion channel regulators (the erythrocyte integral membrane protein stomatin and the C. elegans neuronal protein MEC-2) juxtaposed to a domain similar to nonspecific lipid transfer protein (nsLTP; also called sterol carrier protein 2) [].; GO: 0032934 sterol binding; PDB: 2KSH_A 2KSI_A 1PZ4_A 1C44_A 2CX7_B 1WFR_A 1QND_A 2C0L_B 1IKT_A 3BKR_A ....

>PLN02740 Alcohol dehydrogenase-like

Probab=85.22  E-value=2.1  Score=45.59  Aligned_cols=49  Identities=24%  Similarity=0.373  Sum_probs=39.7

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      .+..++++|++||-+||| -|.+++.+|+..|+ +|+++|.+++.++.+++
T Consensus       191 ~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        191 WNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            345678899999999987 45566677777888 69999999999888865

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=85.18  E-value=2.6  Score=45.88  Aligned_cols=52  Identities=13%  Similarity=0.156  Sum_probs=43.4

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ..+.+.+.+.|.++|.+++++++|.+|..+++++.+.++++ .+.+|.||+|+
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~  250 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIAS  250 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEee
Confidence            56677888888888999999999999998777777766666 58899999996

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=85.14  E-value=0.67  Score=46.28  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      |.+....++...  .|..+||+|||.|-.   +-.++.|-++|.|+|..-+.-|++.
T Consensus        33 Wp~v~qfl~~~~--~gsv~~d~gCGngky---~~~~p~~~~ig~D~c~~l~~~ak~~   84 (293)
T KOG1331|consen   33 WPMVRQFLDSQP--TGSVGLDVGCGNGKY---LGVNPLCLIIGCDLCTGLLGGAKRS   84 (293)
T ss_pred             cHHHHHHHhccC--CcceeeecccCCccc---CcCCCcceeeecchhhhhccccccC
Confidence            445556666654  488999999999964   4444788999999999888777653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=85.05  E-value=2.3  Score=44.43  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=38.8

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+....+|++||-+||| .|.+++.+|+..|+ +|+++|.+++.++.+++
T Consensus       162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~  212 (343)
T PRK09880        162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE  212 (343)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence            344556689999999987 46666777777788 69999999999998875

>PRK08163 salicylate hydroxylase; Provisional

Probab=85.04  E-value=2.4  Score=45.18  Aligned_cols=51  Identities=16%  Similarity=0.070  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          136 YVNKVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       136 l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      +.+.|.+.+.+.+ .+++.+++|+++..+++++.|++.+|+++.+|.||.|.
T Consensus       111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  162 (396)
T PRK08163        111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCD  162 (396)
T ss_pred             HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECC
Confidence            5566666664444 68999999999998888899888888789999999997

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=85.00  E-value=2.6  Score=46.95  Aligned_cols=54  Identities=9%  Similarity=-0.085  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      .+.+.+.+.+.+.|.+++++++|.+|.+.++.+.|.+.+|+.+.+|+||+|+-+
T Consensus       267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~  320 (517)
T PRK15317        267 KLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA  320 (517)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC
Confidence            577788877777789999999999999987788888878878999999999965

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=84.87  E-value=1.7  Score=42.13  Aligned_cols=51  Identities=18%  Similarity=0.179  Sum_probs=36.2

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ++.+.+++|.+||-+|..+|....+++.-  ....|++|+.|+......-.-+
T Consensus        66 l~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la  118 (229)
T PF01269_consen   66 LENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA  118 (229)
T ss_dssp             -S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH
T ss_pred             ccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh
Confidence            34567899999999999999999999986  3569999999996554443333

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=84.83  E-value=3.1  Score=44.53  Aligned_cols=53  Identities=13%  Similarity=0.036  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      .+.+.+.+.+.++|.+++++++|.++.. ++.+.|...+|+++.+|.||+|+-.
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~  239 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI  239 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence            3445667777778999999999999976 4567777778888999999999854

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=84.68  E-value=2.4  Score=44.91  Aligned_cols=50  Identities=24%  Similarity=0.343  Sum_probs=40.6

Q ss_pred             HHHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||=+|+| .|.++..+|+..|+ +|+++|.+++.++.+++
T Consensus       183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence            3456678899999999987 46666777887898 69999999999988865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK06753 hypothetical protein; Provisional

Probab=84.59  E-value=2.4  Score=44.81  Aligned_cols=61  Identities=20%  Similarity=0.184  Sum_probs=45.6

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC-hHHHHhhcc
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH-APDALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p-~~~a~~ll~  196 (602)
                      ..+.+.|.+.+.  +.+|+++++|++|+++++++.|++.+|+++.+|.||-|-= -....+.+.
T Consensus        98 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~  159 (373)
T PRK06753         98 QTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVN  159 (373)
T ss_pred             HHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHHHHhC
Confidence            346667766664  4579999999999998889999888888889998888863 233444443

>PRK09126 hypothetical protein; Provisional

Probab=84.43  E-value=2.1  Score=45.62  Aligned_cols=53  Identities=17%  Similarity=0.102  Sum_probs=42.0

Q ss_pred             HHHHHHHHHh-cCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          136 YVNKVIALLE-SLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       136 l~~~la~~l~-~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      +-+.+.+.+. ..|.+|+.+++|++++..++++.|...+|+++.+|.||.|.-.
T Consensus       112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~  165 (392)
T PRK09126        112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSR  165 (392)
T ss_pred             HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCC
Confidence            4455555543 2478999999999999888888888888888999999999844

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=84.37  E-value=1.9  Score=41.71  Aligned_cols=54  Identities=15%  Similarity=0.084  Sum_probs=38.8

Q ss_pred             HHHHHccCC------CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          541 LQIEKARVS------KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       541 ~l~~~l~l~------~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ..+.++...      .-.+.||+|+|-|.++..+.-..--+|.-||.++.-++.|++...
T Consensus        40 ~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~   99 (218)
T PF05891_consen   40 NFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLG   99 (218)
T ss_dssp             HHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTC
T ss_pred             HHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhc
Confidence            455555433      246899999999999988766545689999999999999997653

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=84.02  E-value=3.1  Score=44.18  Aligned_cols=62  Identities=15%  Similarity=-0.144  Sum_probs=47.3

Q ss_pred             HhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH-HHHhhcc
Q 036521          134 HSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP-DALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~-~a~~ll~  196 (602)
                      ..+.+.|.+.+.+.| .+++ +++|++++.+++++.|++.+|+++.||.||.|.=.. ...+.+.
T Consensus       111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~  174 (388)
T PRK07608        111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQAG  174 (388)
T ss_pred             HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence            356778877777666 7788 999999998888899888888779999999998332 3444443

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=84.02  E-value=3  Score=45.01  Aligned_cols=57  Identities=19%  Similarity=0.050  Sum_probs=45.0

Q ss_pred             CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEE-eCCCc--EEecCEEEEecCh
Q 036521          131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEV-RGDGF--QGFYDGCIMAVHA  188 (602)
Q Consensus       131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~-~~~g~--~~~ad~VI~A~p~  188 (602)
                      .|+ .+.+.+.+.+.++|.+|+++++|.+++..++++.++ +.+|+  .+.+|.||+|+-.
T Consensus       257 pG~-rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr  316 (422)
T PRK05329        257 PGL-RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS  316 (422)
T ss_pred             chH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence            344 588889888988899999999999999887776543 33443  4789999999854

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=83.99  E-value=3.2  Score=44.14  Aligned_cols=62  Identities=16%  Similarity=0.092  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh-HHHHhhcc
Q 036521          135 SYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA-PDALRILG  196 (602)
Q Consensus       135 ~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~-~~a~~ll~  196 (602)
                      .+-+.|.+.+.+. |.+++.+++|+++..+++++.|...+|+++.+|.||.|.=. ....+.+.
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~  176 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQMAG  176 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence            4556676666554 77899999999999888889888888878999999999833 23444443

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=83.96  E-value=3.3  Score=44.87  Aligned_cols=53  Identities=25%  Similarity=0.193  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      +-+.|.+...+.|.+|+.+++|+++..+++++.++..+|+++.||.||.|+=.
T Consensus       110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~  162 (428)
T PRK10157        110 FDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGV  162 (428)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCC
Confidence            33445555555699999999999998877776544455667999999999843

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=83.73  E-value=3.2  Score=45.78  Aligned_cols=53  Identities=19%  Similarity=0.150  Sum_probs=43.6

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEec
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~  186 (602)
                      .++.+.+.+.|+++|.++++++.|++|...+++ ..|...+|+.+.+|.||+|+
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~  284 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAI  284 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEee
Confidence            567788888898889999999999999876554 55666667778999999986

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=83.70  E-value=3.2  Score=44.09  Aligned_cols=55  Identities=18%  Similarity=-0.035  Sum_probs=44.6

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.|.+.+.+.+..++.+++|++++.+++++.|++.+|+++.+|.||.|.=.
T Consensus       111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~  165 (388)
T PRK07494        111 WLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGR  165 (388)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCC
Confidence            3566777777765555559999999999998999998888888999999999743

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=83.51  E-value=2.8  Score=42.01  Aligned_cols=49  Identities=24%  Similarity=0.382  Sum_probs=41.1

Q ss_pred             HHccCCCCCeEEEEecCc-hHHHHHHHhccCCE-EEEEcCCHHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQLKYAEMK  592 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~-v~gid~S~~~l~~a~~~  592 (602)
                      ....+++|++||-.|||. |..++.+|+..|++ |++++.+++..+.+++.
T Consensus        91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~  141 (277)
T cd08255          91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL  141 (277)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence            356788999999999986 77778888888888 99999999998877654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=83.22  E-value=3.7  Score=41.32  Aligned_cols=56  Identities=13%  Similarity=0.039  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC-CcEEecCEEEEecChHH
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD-GFQGFYDGCIMAVHAPD  190 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~-g~~~~ad~VI~A~p~~~  190 (602)
                      .+.+.|.+.+.+.|.+++++++|+++..+++++.+...+ +.++.+|.||.|+-...
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            455666666666689999999999999888887765443 44789999999996543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK14727 putative mercuric reductase; Provisional

Probab=83.21  E-value=3.4  Score=45.49  Aligned_cols=55  Identities=15%  Similarity=0.144  Sum_probs=45.0

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.+.+.|.++|.+++++++|.+++.+++++.|.+.++ ++.+|.||+|+..
T Consensus       227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~  281 (479)
T PRK14727        227 DPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGR  281 (479)
T ss_pred             hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCC
Confidence            345667788888888999999999999988777777776666 5889999999854

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=83.20  E-value=2.8  Score=43.58  Aligned_cols=49  Identities=31%  Similarity=0.445  Sum_probs=39.1

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCCE-EEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~  591 (602)
                      +..+.+++|++||=+|+| -|.+++.+|+..|++ |++++.+++.++.+++
T Consensus       156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~  206 (339)
T cd08239         156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA  206 (339)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            456778899999999886 455556677778988 9999999999888754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=83.17  E-value=3.3  Score=45.15  Aligned_cols=54  Identities=19%  Similarity=0.068  Sum_probs=42.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCC-cEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDG-FQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g-~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.|.++|.++++++.|++|..++++ +.|...+| +.+.+|.||+|+.
T Consensus       207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G  262 (450)
T TIGR01421       207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIG  262 (450)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeC
Confidence            456677888888889999999999999876555 66666666 4689999999963

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00052 thioredoxin reductase; Provisional

Probab=82.90  E-value=3.7  Score=45.50  Aligned_cols=53  Identities=17%  Similarity=0.286  Sum_probs=43.7

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ..+.+.+.+.|.++|.++++++.|.+++..++++.|...+|+++.+|.||+|+
T Consensus       222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~  274 (499)
T PTZ00052        222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYAT  274 (499)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEee
Confidence            35667888888888999999999999987666677777677778999999986

>PLN02463 lycopene beta cyclase

Probab=82.87  E-value=3.5  Score=44.96  Aligned_cols=52  Identities=17%  Similarity=0.097  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      .+.+.|.+.+.+.|.+++ .++|++|+..++++.|++.+|+++.||.||.|+=
T Consensus       115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG  166 (447)
T PLN02463        115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATG  166 (447)
T ss_pred             HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcC
Confidence            566777777766677875 6799999998888989888888899999999983

>PRK14694 putative mercuric reductase; Provisional

Probab=82.82  E-value=3.7  Score=45.07  Aligned_cols=54  Identities=9%  Similarity=-0.020  Sum_probs=44.3

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ...+.+.+.+.+.++|.++++++.|.+|+.+++.+.+.+.++ ++.+|.||+|+-
T Consensus       217 ~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G  270 (468)
T PRK14694        217 DPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATG  270 (468)
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccC
Confidence            356778888888888999999999999988766666666555 699999999974

>PRK06184 hypothetical protein; Provisional

Probab=82.81  E-value=3.3  Score=45.85  Aligned_cols=61  Identities=20%  Similarity=0.138  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe---CCCcEEecCEEEEecChHH-HHhhcc
Q 036521          136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR---GDGFQGFYDGCIMAVHAPD-ALRILG  196 (602)
Q Consensus       136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~---~~g~~~~ad~VI~A~p~~~-a~~ll~  196 (602)
                      +-+.|.+.+.+.|.+|+++++|+++++++++|+++.   .+++++.+|.||.|.=... ..+.+.
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg  175 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALG  175 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence            445666666666889999999999999888887765   5566789999999984333 444443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=82.70  E-value=3.8  Score=44.95  Aligned_cols=54  Identities=22%  Similarity=0.208  Sum_probs=42.5

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC--CC--cEEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG--DG--FQGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~--~g--~~~~ad~VI~A~  186 (602)
                      ...+.+.+.+.|.++|.+|+++++|+++..+++++.++..  +|  +++.+|.||+|+
T Consensus       212 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~  269 (466)
T PRK07818        212 DAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAI  269 (466)
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECc
Confidence            3456788888888889999999999999877666655432  55  368999999996

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=82.61  E-value=3.5  Score=44.71  Aligned_cols=54  Identities=15%  Similarity=0.099  Sum_probs=41.6

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCC----eEEEEeCCCc--EEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDE----GRTEVRGDGF--QGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~----gv~v~~~~g~--~~~ad~VI~A~p  187 (602)
                      ..+.+.|.+.+.+.|.+|+++++|+++..+++    |+.+...+++  .+.++.||+|+=
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtG  189 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATG  189 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecC
Confidence            46788888888888999999999999998644    3445444554  357899999983

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=82.58  E-value=2.6  Score=44.78  Aligned_cols=52  Identities=17%  Similarity=0.079  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhc-CCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          136 YVNKVIALLES-LGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       136 l~~~la~~l~~-~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      +-+.|.+.+.+ .|.+|+.+++|+++..++++|.|++.+|..+.+|.||.|.=
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG  166 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADG  166 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecC
Confidence            44555555533 36799999999999988889998888887889999999983

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=82.45  E-value=3.1  Score=43.72  Aligned_cols=49  Identities=27%  Similarity=0.500  Sum_probs=39.6

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      .+...+++|++||-+|||. |..++.+|+..|+ +|+++|.+++.++.+++
T Consensus       169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~  219 (358)
T TIGR03451       169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE  219 (358)
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            3455788999999999873 6667778887888 49999999999988864

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=82.24  E-value=3.8  Score=45.06  Aligned_cols=55  Identities=15%  Similarity=0.172  Sum_probs=43.2

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC--C--cEEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD--G--FQGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~--g--~~~~ad~VI~A~p  187 (602)
                      ...+.+.+.+.|.++|.+|+++++|++|+.+++++.|...+  |  +.+.+|.||+|+.
T Consensus       223 d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G  281 (475)
T PRK06327        223 DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIG  281 (475)
T ss_pred             CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccC
Confidence            35677788888888899999999999999877777665432  4  3578999999974

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=82.03  E-value=3.7  Score=43.59  Aligned_cols=57  Identities=16%  Similarity=0.101  Sum_probs=47.9

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD  190 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~  190 (602)
                      ...+.+.+.+.+. .++.+++++.|++|+.+++++.|++.+|+++.|+.||-|.++..
T Consensus        86 ~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   86 RADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence            3467788888886 46789999999999999988888888998899999999987543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=82.01  E-value=4.2  Score=43.58  Aligned_cols=55  Identities=15%  Similarity=0.013  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEec-CCeE-EEEeCCCcEEecCEEEEecChHH
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQY-DEGR-TEVRGDGFQGFYDGCIMAVHAPD  190 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~-~~gv-~v~~~~g~~~~ad~VI~A~p~~~  190 (602)
                      .+...+++...++|.+++.+++|++|+.. ++++ .|.+.+| ++.+++||+|+-+..
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            45566777777779999999999999764 3444 4667777 699999999975543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=82.00  E-value=3  Score=43.93  Aligned_cols=53  Identities=19%  Similarity=0.103  Sum_probs=40.5

Q ss_pred             cHhHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH
Q 036521          133 SHSYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD  190 (602)
Q Consensus       133 ~~~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~  190 (602)
                      ...+...|++.+.++ |.+|+.+++|.+|+..    .|.+.+| .+.||+||+|+-+..
T Consensus       144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCCh
Confidence            345677787776554 8999999999999753    5667777 478999999996643

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=81.90  E-value=0.47  Score=49.73  Aligned_cols=77  Identities=22%  Similarity=0.283  Sum_probs=45.6

Q ss_pred             HHHHHHhcCccc-cCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCC----eEEEEeC----CCcEEe
Q 036521          108 ILSFYRNHHLLQ-LFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDE----GRTEVRG----DGFQGF  178 (602)
Q Consensus       108 ~l~~~~~~g~~~-~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~----gv~v~~~----~g~~~~  178 (602)
                      |+.|+..+|-+. .-..+...+.+.-..++.+-+++.+   +.+|+++++|++|+...+    .|+|.+.    +++++.
T Consensus        71 flnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~---~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~  147 (341)
T PF13434_consen   71 FLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQL---DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYR  147 (341)
T ss_dssp             HHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCG---TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEE
T ss_pred             HHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhC---CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEE
Confidence            667777665211 0001112233333445666777777   556999999999998654    3888772    345789


Q ss_pred             cCEEEEecC
Q 036521          179 YDGCIMAVH  187 (602)
Q Consensus       179 ad~VI~A~p  187 (602)
                      |++||+|+-
T Consensus       148 ar~vVla~G  156 (341)
T PF13434_consen  148 ARNVVLATG  156 (341)
T ss_dssp             ESEEEE---
T ss_pred             eCeEEECcC
Confidence            999999984

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=81.88  E-value=3.9  Score=43.16  Aligned_cols=49  Identities=29%  Similarity=0.381  Sum_probs=38.8

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      .+..++++|++||=.|+| .|.+++.+|+..|+ +|+++|.+++.++.+++
T Consensus       180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~  230 (369)
T cd08301         180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK  230 (369)
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            345678899999999986 45555667777888 89999999998888754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=81.62  E-value=4  Score=42.33  Aligned_cols=48  Identities=29%  Similarity=0.477  Sum_probs=41.1

Q ss_pred             HHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +...+.+|++||-.|+|. |..++.+|+..|++|++++-|+++.+.+++
T Consensus       153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~  201 (337)
T cd08261         153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE  201 (337)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence            456788999999999885 888888999889999999999999888754

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=81.36  E-value=3.9  Score=44.80  Aligned_cols=59  Identities=17%  Similarity=0.133  Sum_probs=44.1

Q ss_pred             cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEe--CCC--cEEecCEEEEecCh
Q 036521          130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVR--GDG--FQGFYDGCIMAVHA  188 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~--~~g--~~~~ad~VI~A~p~  188 (602)
                      .++...+...|.+.+.+.|.+|+++++|++|..++++|. |+.  .+|  ..+.++.||+|+-.
T Consensus       127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence            344567888898888888999999999999988666542 332  333  25789999999843

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=81.13  E-value=4  Score=42.78  Aligned_cols=48  Identities=19%  Similarity=0.314  Sum_probs=41.0

Q ss_pred             HHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAE  590 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~  590 (602)
                      .+...+++|++||=.|+  |.|.+++.+|+..|++|++++.|++..+.++
T Consensus       151 ~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~  200 (348)
T PLN03154        151 YEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK  200 (348)
T ss_pred             HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            34567889999999998  4788888899888999999999998888775

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=81.06  E-value=3.9  Score=41.33  Aligned_cols=49  Identities=27%  Similarity=0.308  Sum_probs=37.9

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCCE-EEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCN-YTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~  591 (602)
                      ++.+...+|++||-+|+| -|.++..+|+..|++ |+.+|.+++-++.+++
T Consensus       113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~  163 (280)
T TIGR03366       113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS  163 (280)
T ss_pred             HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            455566689999999986 455666677777886 9999999988877765

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=80.90  E-value=4.1  Score=41.96  Aligned_cols=52  Identities=25%  Similarity=0.375  Sum_probs=42.1

Q ss_pred             HHHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      ..++.+.+++|+.|.-+|||. |-.++.-|+..|+ ++++||++++-++.|++.
T Consensus       176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f  229 (366)
T COG1062         176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF  229 (366)
T ss_pred             HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence            346778899999999999995 4445555665665 899999999999999874

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=80.58  E-value=4.6  Score=42.64  Aligned_cols=49  Identities=24%  Similarity=0.454  Sum_probs=39.1

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      .+...+++|++||-+|+| -|.++..+|+..|+ +|+++|.+++.++.+++
T Consensus       179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~  229 (368)
T cd08300         179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK  229 (368)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            455678899999999986 45556667777888 79999999999888754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=80.57  E-value=5  Score=39.58  Aligned_cols=45  Identities=27%  Similarity=0.387  Sum_probs=38.2

Q ss_pred             CCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       548 l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      +.+|++||..|+|. |..+..+++..|++|++++.+++..+.+++.
T Consensus       132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~  177 (271)
T cd05188         132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL  177 (271)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence            47899999999995 7778888887899999999999888877543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06370 mercuric reductase; Validated

Probab=80.30  E-value=5  Score=43.89  Aligned_cols=54  Identities=17%  Similarity=0.102  Sum_probs=41.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe--C-CCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR--G-DGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~--~-~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.|.++|.+|+++++|.+|...++++.|..  . +++++.+|.||+|+.
T Consensus       212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G  268 (463)
T PRK06370        212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVG  268 (463)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcC
Confidence            34566777778778999999999999998776655433  2 344689999999974

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=80.05  E-value=4.3  Score=42.67  Aligned_cols=48  Identities=29%  Similarity=0.349  Sum_probs=38.0

Q ss_pred             ccCCCCCeEEEEecCc-hHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHH
Q 036521          546 ARVSKGHGVLEIGCGW-GTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~-G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~  593 (602)
                      ...+++.+|+-+|||. |.++..+|+..| .+|+.+|.+++-++.|++..
T Consensus       164 ~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~  213 (350)
T COG1063         164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG  213 (350)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence            3445555999999995 666677777766 58999999999999998843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	602
1tpy_A	287	Structure Of The Cyclopropane Synthase Mmaa2 From M		2e-15
1kpg_A	287	Crystal Structure Of Mycolic Acid Cyclopropane Synt		3e-15
1kp9_A	287	Crystal Structure Of Mycolic Acid Cyclopropane Synt		3e-15
1kpi_A	302	Crystal Structure Of Mycolic Acid Cyclopropane Synt		9e-15
1l1e_A	287	Crystal Structure Of Mycolic Acid Cyclopropane Synt		2e-14
2fk7_A	318	Crystal Structure Of Hma (Mmaa4) From Mycobacterium		8e-14

>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 58/107 (54%)
Query: 489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV 548
           N L     ++  HYDLS++ F LF+D + TYSC  F+ ED  L+ AQ+ K  L + K  +
Sbjct: 3   NDLTPHFEDVQAHYDLSDDFFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLGL 62
Query: 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
             G  +L+IGCGWG      + Q   N  G+TLS  Q  + +   +E
Sbjct: 63  QPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDE 109

>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 497 NISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLE 556
           N+  HYDLS++ F LF+D + TYSC  F+ +D  L+ AQ+ K  L + K  +  G  +L+
Sbjct: 11  NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDXTLQEAQIAKIDLALGKLGLQPGXTLLD 70
Query: 557 IGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593
           +GCGWG      V +   N  G+TLS  Q  + +  V
Sbjct: 71  VGCGWGATXXRAVEKYDVNVVGLTLSKNQANHVQQLV 107

>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 56/97 (57%)
Query: 497 NISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLE 556
           N+  HYDLS++ F LF+D + TYSC  F+ +D  L+ AQ+ K  L + K  +  G  +L+
Sbjct: 11  NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLD 70
Query: 557 IGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV 593
           +GCGWG   +  V +   N  G+TLS  Q  + +  V
Sbjct: 71  VGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV 107

>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 55/98 (56%)
Query: 498 ISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEI 557
           +  HYD SNE F L++D SMTYSC  F+  D  L+ AQ  K  L ++K  +  G  +L+I
Sbjct: 20  VRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDI 79
Query: 558 GCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
           GCGWG+     V +   N  G+TLS  Q  + +   +E
Sbjct: 80  GCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE 117

>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 497 NISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLE 556
           N+  HYDLS++ F LF+D + TYSC  F+ +D  L+ AQ+ K  L + K  +  G  +L+
Sbjct: 11  NVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLNLEPGMTLLD 70
Query: 557 IGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
           IGCGWG      + +   N  G+TLS  Q  + +   ++
Sbjct: 71  IGCGWGATMRRAIEKYDVNVVGLTLSENQAGHVQKMFDQ 109

>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 497 NISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLE 556
           +I  HYD+S++ FALF D + TYSC  F+  +  L+ AQ  K  L ++K  +  G  +L+
Sbjct: 37  DIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLD 96
Query: 557 IGCGWGTFAIEVVRQTGCNYTGITLSAEQ 585
           IGCGWGT     V +   N  G+TLS  Q
Sbjct: 97  IGCGWGTTMRRAVERFDVNVIGLTLSKNQ 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	602
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	2e-49
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	2e-46
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	8e-46
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-39
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	6e-31
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	6e-26
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	3e-19
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	3e-18
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	6e-16
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	9e-12
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-10
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-10
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	8e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-08
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	3e-07
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-06
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	4e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	8e-06
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	8e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	9e-06
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	9e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	2e-05
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-05
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-05
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	4e-05
3cc8_A	230	Putative methyltransferase; structural genomics, j	6e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	9e-05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	1e-04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	1e-04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	1e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	1e-04
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	1e-04
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	1e-04
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-04
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	2e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	2e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	4e-04
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	4e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	4e-04
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	6e-04
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	7e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	8e-04

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318

 Score =  173 bits (440), Expect = 2e-49
 Identities = 39/134 (29%), Positives = 59/134 (44%)

Query: 466 WTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFK 525
           +     +  +   S+                +I  HYD+S++ FALF D + TYSC  F+
Sbjct: 6   YHHHHSSGLVPRGSHMAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFE 65

Query: 526 DEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQ 585
             +  L+ AQ  K  L ++K  +  G  +L+IGCGWGT     V +   N  G+TLS  Q
Sbjct: 66  PPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQ 125

Query: 586 LKYAEMKVNEAGLQ 599
               E  +      
Sbjct: 126 HARCEQVLASIDTN 139

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287

 Score =  164 bits (417), Expect = 2e-46
 Identities = 38/111 (34%), Positives = 59/111 (53%)

Query: 489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV 548
           + L     N+  HYDLS++ F LF+D + TYSC  F+ +D  L+ AQ+ K  L + K  +
Sbjct: 3   DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGL 62

Query: 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
             G  +L++GCGWG   +  V +   N  G+TLS  Q  + +  V  +   
Sbjct: 63  QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL 113

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302

 Score =  163 bits (414), Expect = 8e-46
 Identities = 40/117 (34%), Positives = 57/117 (48%)

Query: 483 RHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQ 542
              +    L      +  HYD SNE F L++D SMTYSC  F+  D  L+ AQ  K  L 
Sbjct: 5   GDTTSGTQLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLA 64

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           ++K  +  G  +L+IGCGWG+     V +   N  G+TLS  Q  + +   +E    
Sbjct: 65  LDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP 121

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score =  148 bits (376), Expect = 2e-39
 Identities = 36/363 (9%), Positives = 97/363 (26%), Gaps = 45/363 (12%)

Query: 2   TCPNMMEFLESLGADMEISNMSFSKKNVLG--------PYFWQIIREIMKFKDDVLCYLE 53
           +   + E ++  G  ++   +     +  G        P     +   ++    +L    
Sbjct: 66  SYDTIQEIMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKY 125

Query: 54  ELENNPDI------DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFS 107
           +  +          D      +F+   G     +  ++ P     +           A  
Sbjct: 126 QGYDANGHYNKVHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYGHFDN----VPAAY 180

Query: 108 ILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR 167
           +L +     ++       W T    + +       L  +L    +   ++  + + ++G+
Sbjct: 181 VLKYLDFVTMMSFAKGDLW-TWADGTQAMFE---HLNATLEHPAERNVDITRITR-EDGK 235

Query: 168 TEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNF-- 225
             +    +    D  ++ V     L      +  +E+       +    +     K +  
Sbjct: 236 VHIHTTDWDRESDVLVLTVPLEKFLDYSD--ADDDEREYFSKIIHQQYMVDACLVKEYPT 293

Query: 226 ----------MPRNPAAWSAWNFLGGLDGKACLTYWLNV---LQNIGDGETGLPFLVTLN 272
                       R       ++       +   TY L       +    E     L  + 
Sbjct: 294 ISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRNHPDYADKTQEECRQMVLDDME 353

Query: 273 PDHTP--NNTLLKWSTGHPVPSVAASKASL--ELDHIQGKRGIWFCEAYQGYGFHEDGLK 328
               P       +     P  S    KA    +++ +QG+R  ++      +G  ++   
Sbjct: 354 TFGHPVEKIIEEQTWYYFPHVSSEDYKAGWYEKVEGMQGRRNTFYAGEIMSFGNFDEVCH 413

Query: 329 AGM 331
              
Sbjct: 414 YSK 416

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score =  121 bits (306), Expect = 6e-31
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 3/123 (2%)

Query: 478 ASYFLRHISRRNSLAQARRNI-SYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQM 536
           A Y+       N        +  +HY +     A   D   +        E   L+ AQ 
Sbjct: 46  ARYWNNEARPVNLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAELHRLESAQA 105

Query: 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA 596
               L     +      +++ GCG G   +   R+ G    G+TLSA Q  +   +  E 
Sbjct: 106 EF--LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL 163

Query: 597 GLQ 599
            + 
Sbjct: 164 RID 166

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score =  106 bits (267), Expect = 6e-26
 Identities = 28/108 (25%), Positives = 42/108 (38%)

Query: 492 AQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKG 551
           A     +   YD   + FA    E++ +        D  +  A  R     I    V  G
Sbjct: 3   APTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSG 62

Query: 552 HGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
             VL++GCG G  A+ +        TGI++S  Q+  A  +   AGL 
Sbjct: 63  DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA 110

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 86.8 bits (215), Expect = 3e-19
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 513 MDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT 572
           MD    ++    + E          K++      R+  G  +L++G G G       R  
Sbjct: 1   MDIPRIFTI--SESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH 58

Query: 573 GCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           G   TGI +S+     A+ +  E G+ 
Sbjct: 59  GITGTGIDMSSLFTAQAKRRAEELGVS 85

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 84.1 bits (208), Expect = 3e-18
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 14/117 (11%)

Query: 482 LRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSL 541
           +  I   NS  +     + + D   +++     E+   S               +     
Sbjct: 1   MTLIENLNS-DKTFLENNQYTDEGVKVYEFIFGENYISS-------------GGLEATKK 46

Query: 542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL 598
            +    +++   VL+IG G G   + +  + G +  GI + +  +  A  +V+    
Sbjct: 47  ILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNK 103

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 487 RRNSLAQARRNISYHYDLSNE---LFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQI 543
              +    + N   +YD  +     F ++  E +         + ++++ A +R      
Sbjct: 12  PAATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLA 71

Query: 544 EK----ARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
            +      + +    L++G G+G  A  +VR+ G +   + ++  Q K  E   N+AGL 
Sbjct: 72  SELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA 131

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 66.6 bits (162), Expect = 9e-12
 Identities = 46/267 (17%), Positives = 77/267 (28%), Gaps = 39/267 (14%)

Query: 4   PNMMEFLESLGADMEISNMSFSKKNVLGPYFW-------------QIIREIMKF-KDDVL 49
              +  +  LG D E+  +          + +              ++R    F K    
Sbjct: 69  ARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFW 128

Query: 50  CYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSIL 109
             L EL      + DET+  F + R   E+     +  +C  +++  S  +   S F  L
Sbjct: 129 AGLRELTKPRGKEPDETVHSFAQRRLGPEVASL-AMDSLCRGVFAGNSRELSIRSCFPSL 187

Query: 110 SFYRNHH----------------------LLQLFGRPQWLTVRSRSHSYVNKVIALLESL 147
                 H                         L  R    ++R         +   L S 
Sbjct: 188 FQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSR 247

Query: 148 GCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLL 207
           G  +  G  VC +    EGR +V         D  I A+ A     +L  ++     R L
Sbjct: 248 GVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA-PLARAL 306

Query: 208 GAFQYV-YSDIFLHRDKNFMPRNPAAW 233
            A   V  + + L      +P      
Sbjct: 307 SAITAVSVAVVNLQYQGAHLPVQGFGH 333

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 27/86 (31%)

Query: 514 DESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG 573
           D   ++ C  FK        +             ++    + +IGCG G   + +     
Sbjct: 10  DFDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK 69

Query: 574 CNYTGITLSAEQLKYAEMKVNEAGLQ 599
              TGI L  + ++       +A   
Sbjct: 70  GQITGIDLFPDFIEIFNENAVKANCA 95

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601
           +    VL+ G G     + +  + G    GI +S  QLK AE    E   ++ 
Sbjct: 22  NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLN 74

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 55.2 bits (133), Expect = 8e-09
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           I +  ++ G   ++IG G G  +I + +Q+  +   +  S    + A   + +A L 
Sbjct: 37  INRFGITAGT-CIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN 92

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 2/86 (2%)

Query: 516 SMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWG--TFAIEVVRQTG 573
                   ++     L   +   H  +  +  +  G  V  + CGW     A++     G
Sbjct: 84  LAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPG 143

Query: 574 CNYTGITLSAEQLKYAEMKVNEAGLQ 599
               GI    E L  A        L 
Sbjct: 144 VQLVGIDYDPEALDGATRLAAGHALA 169

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 546 ARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
             +++   + +IGCG G   + +        TG+   +  +        ++GLQ
Sbjct: 42  DNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ 95

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 545 KARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601
              + K   VL++ CG G F+  +    G    G+ +S + ++ A          V 
Sbjct: 33  MKYMKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESNVE 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 80/581 (13%), Positives = 141/581 (24%), Gaps = 220/581 (37%)

Query: 16  DMEISNMSFSKKNVLGPYFWQIIREIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRG 75
           D E     +  K++L   F         F D+  C           D  +     +    
Sbjct: 8   DFETGEHQYQYKDIL-SVFED------AFVDNFDCK----------DVQDMPKSILSKEE 50

Query: 76  YSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHS 135
              +                            +    R      LF    W  +  +   
Sbjct: 51  IDHIIMS-------------KDA---------VSGTLR------LF----WTLLSKQEEM 78

Query: 136 YVNKVIALLES----LGCQIKTGCEVCSVL--QYDEGRTEVRGDGFQGFYDGCIMAVHAP 189
               V  +L      L   IKT     S++   Y E R  +  D  Q F    +  +   
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPY 137

Query: 190 DALRILGNQSTFEEKRLLGAFQYVYSDIFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLT 249
             LR    Q+  E +            + +      +              G  GK  + 
Sbjct: 138 LKLR----QALLELRPAKN--------VLIDG----V-------------LGS-GKTWVA 167

Query: 250 YWLNVLQNIGDGETGLPFLV---TLNPDHTPNNTLLKWSTGHPVPSVAASKASLELDHIQ 306
             L+V  +    +  + F +    L   ++P                        L+ +Q
Sbjct: 168 --LDVCLSY-KVQCKMDFKIFWLNLKNCNSPE---------------------TVLEMLQ 203

Query: 307 GKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLGKRCASLCNPRNMVPSLMERGARLFVAR 366
                     YQ                      R     N +  + S+     RL  ++
Sbjct: 204 K-----LL--YQ---------------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 367 FLKQFVCAGCLILLEEVGT-----TFTFEGTRRYCNLRTVLRIHNPQFYWKVMTHADLGL 421
             +      CL++L  V        F        C      +I        ++T     +
Sbjct: 242 PYEN-----CLLVLLNVQNAKAWNAFNLS-----C------KI--------LLTTRFKQV 277

Query: 422 AD----------SYIDGDFSFADKE-EGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLL 470
            D          S      +    E + LL    +    +DL   V   N       P  
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTN-------PRR 329

Query: 471 FTSGIASASYFLR-HISRRNSLAQARRN-------ISYHYDLSNELFALFMDESMTYSCP 522
             S IA     +R  ++  ++      +        S +     E   +F          
Sbjct: 330 L-SIIAE---SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR------LS 379

Query: 523 IFKD------------------EDEDLKVAQMRKHSLQIEK 545
           +F                     D  + V ++ K+SL +EK
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEK 419

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 13/93 (13%)

Query: 501 HYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCG 560
             D   +L AL    +              ++  Q        E  +V  G  +LEIGCG
Sbjct: 5   RLDYITDLMALGPTANA-----------RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCG 53

Query: 561 WGTFAIEVVRQTGCN--YTGITLSAEQLKYAEM 591
            G  +  +  Q G +   TGI +++        
Sbjct: 54  QGDLSAVLADQVGSSGHVTGIDIASPDYGAPLT 86

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 497 NISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLE 556
           +    +D S E +     E                  +  R   +   +  V K   VL+
Sbjct: 15  SAEKKWDSSAEFWNQNSQEMWD---------------SGSRSTIIPFFEQYVKKEAEVLD 59

Query: 557 IGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           +GCG G    ++ R  G    G+ +S   ++  + +     L 
Sbjct: 60  VGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERGEGPDLS 101

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGL 598
           L     +++K   +++ GCG+G   + ++     G  YTGI      L  A         
Sbjct: 13  LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY 72

Query: 599 QVT 601
              
Sbjct: 73  DSE 75

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG 597
             L         G  VLE GCG G   + + +       T I +S E L+ A     + G
Sbjct: 26  EKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG 85

Query: 598 L 598
           +
Sbjct: 86  I 86

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 523 IFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLS 582
           I++   E +K        +  ++    +   VL++ CG G   +E+  + G    G+ L 
Sbjct: 15  IYRRRIERVKAEIDFVEEI-FKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLH 72

Query: 583 AEQLKYAEMKVNEAGLQVT 601
            E L+ A  K  E  L++ 
Sbjct: 73  EEMLRVARRKAKERNLKIE 91

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 527 EDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQL 586
           E++     ++ K  L+           VL+IGCG G F +E+ ++ G    G+ ++ + +
Sbjct: 18  EEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEF-LELCKEEGIESIGVDINEDMI 76

Query: 587 KYAEMKVN 594
           K+ E K N
Sbjct: 77  KFCEGKFN 84

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 545 KARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601
             +V  G  + +IGCG GT  + +        TG+ LS E L+ A+ K  E    V 
Sbjct: 28  LEQVEPGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNRHVD 82

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 530 DLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYA 589
           D  V +     L   +   +    +++  CG GT    + +       G+ +S   L+ A
Sbjct: 36  DANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIA 94

Query: 590 EMKVNEAGLQV 600
             +   A +  
Sbjct: 95  AKENTAANISY 105

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 31/280 (11%), Positives = 76/280 (27%), Gaps = 40/280 (14%)

Query: 4   PNMMEFLESLGADMEISNMSFSKKNVLGPYFWQIIRE-----------------IMKFKD 46
            +  + ++ LG +  + N +  +  VL       + +                 +     
Sbjct: 72  KSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSG 131

Query: 47  DVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLV-PICGSIWSCPSEGIMSFSA 105
                ++ +        D++LG+F + R   E+ +   L+ P+   I++   + +   S 
Sbjct: 132 KARAAMDFILPASKTKDDQSLGEFFRRRVGDEVVE--NLIEPLLSGIYAGDIDKLSLMST 189

Query: 106 F-SILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNK-------------VIALLESLGC-Q 150
           F       + H  L L  +        +  +   +             V  + + L   +
Sbjct: 190 FPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKLTK 249

Query: 151 IKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAF 210
           +  G +V  +       +    +G     D  I+      A  +L           L   
Sbjct: 250 VYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSELPAISH---LKNM 306

Query: 211 QYVYSDI--FLHRDKNFMPRNPAAWSAWNFLGGLDGKACL 248
                        + +    +       +        AC 
Sbjct: 307 HSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACT 346

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQVT 601
           +   + S    V+++GCG G     +++ +     TG+ +S   L+ A+ +++   L   
Sbjct: 22  VAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN 81

Query: 602 N 602
            
Sbjct: 82  Q 82

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 528 DEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLK 587
             D+   +     ++            L++ CG G     +  +   N   + LS E L 
Sbjct: 15  RADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLS 73

Query: 588 YAEMKVNEAGLQVT 601
            AE K    GL+  
Sbjct: 74  EAENKFRSQGLKPR 87

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 554 VLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
           VL+IGC  G      +++ G   +GI    E  + A+ K++ 
Sbjct: 36  VLDIGCSSGALG-AAIKENGTRVSGIEAFPEAAEQAKEKLDH 76

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 8/54 (14%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE 595
              +  ++   +L++G G G  +  ++ +     +T + +S + L+ A+ +   
Sbjct: 37  SIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG 90

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
           M    ++        G+ +LE+G   G F    +++   + T +  S E + +A+ ++ +
Sbjct: 29  MHPFMVRAFTPFFRPGN-LLELGSFKGDFT-SRLQEHFNDITCVEASEEAISHAQGRLKD 86

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           I    + +   +L+IGCG G  ++E+  + G + TGI +++E ++ AE      GL 
Sbjct: 23  IIHNYLQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLN 78

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 528 DEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLK 587
            + ++ A     + +           VLE+  G G      +   G   T + LS   L 
Sbjct: 60  RDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLA 118

Query: 588 YAEMKVNEAGLQV 600
               ++ EA   V
Sbjct: 119 AFRKRLAEAPADV 131

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 546 ARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601
             +  G  +LE+GCG G  A  ++   G +      S E    A  ++      + 
Sbjct: 39  GELPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLGRPVRTML 93

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 523 IFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLS 582
            +    +D   A        + ++R  +   +L++ CG GT      ++   +  G+ LS
Sbjct: 15  FYLGRGKDY--AAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKE-FGDTAGLELS 71

Query: 583 AEQLKYAEMKVNEAGLQV 600
            + L +A  ++ +A L  
Sbjct: 72  EDMLTHARKRLPDATLHQ 89

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVTN 602
           +   R    H VL++ CG G  +I +V + G + T +  S + LKYA  +      +   
Sbjct: 50  LGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAF 108

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 541 LQIEKARVSKGHGVLEIGCGWGTF-AIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL 598
            +    R  +G   + IG G      I +    G     + +  +  + +   +   G+
Sbjct: 113 NEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV 171

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594
           +      K   +++ GCG G +   ++         I ++   LK  + K +
Sbjct: 10  LPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD 60

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 514 DESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG 573
           D   T      K++    K      H   ++ A++     VL++GCG G  ++ +    G
Sbjct: 84  DLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL-G 142

Query: 574 CNYTGITLSAEQLKYAEMKVNEAGLQVT 601
            + T    +   + +      +  L ++
Sbjct: 143 YDVTSWDHNENSIAFLNETKEKENLNIS 170

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 487 RRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKA 546
           +  ++   +  I  HY+   E        S T +     +  +             + + 
Sbjct: 12  KDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKAC-----------LIRL 60

Query: 547 RVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG 597
              +G  VL++GCG G   ++  R     Y G+ ++   +  A ++     
Sbjct: 61  YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 111

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 12/51 (23%), Positives = 21/51 (41%)

Query: 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600
            G  ++++GCG+G F             G+ LS + L  A     + G+  
Sbjct: 43  GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITY 93

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 546 ARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600
             ++    VLE GCG G  A     Q    +     S E LK A      A +  
Sbjct: 44  RLLTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADVYE 97

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 14/50 (28%), Positives = 19/50 (38%)

Query: 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
               VL++GCG+G   I           GI LS   L  A+ K     + 
Sbjct: 44  NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVC 93

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601
           +   VL++GCG G     +  + G    G+      +  A           +
Sbjct: 52  QPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAAGAGEVHLAS 102

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600
           ++  A   +G  +L+ GCG G     + +Q G +  G  L    + YA+    EA   V
Sbjct: 38  RLIDAMAPRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFPEARWVV 95

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYA 589
           +   +      V+++GCG G     +++       TG+ +S   L+ A
Sbjct: 22  VAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERA 69

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL 598
           I+ A     H VL+IG G G  A+           G+  + E ++ A     E G+
Sbjct: 14  IKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	602
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.87
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.81
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.8
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.78
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.78
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.78
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.76
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.75
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.71
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.7
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.69
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.69
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.68
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.67
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.63
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.63
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.61
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.59
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.59
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.58
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.56
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.52
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.36
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.36
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.34
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.31
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.3
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.26
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.18
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.17
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.11
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.07
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.02
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.98
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.97
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.96
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.93
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.88
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.87
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.87
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.86
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.84
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.84
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.83
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.8
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.79
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.79
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.79
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.78
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.78
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.77
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.77
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.73
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.72
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.72
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.7
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.69
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.69
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.69
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.69
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.69
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.67
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.66
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.66
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.65
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.65
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.65
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.64
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.63
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.63
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.63
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.63
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.62
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.62
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.62
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.62
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.61
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.61
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.61
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.6
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.6
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.6
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.6
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.6
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.6
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.6
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.6
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.59
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.59
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.59
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.58
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.58
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.58
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.58
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.58
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.57
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.57
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.57
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.57
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.57
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.57
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.57
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.57
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.56
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.56
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.56
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.56
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.56
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.55
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.55
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.55
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.55
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.54
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.54
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.54
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.53
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.53
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.53
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.52
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.52
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.52
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.52
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.51
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.51
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.51
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.5
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.5
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.49
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.49
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.49
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.49
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.48
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.48
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.48
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.47
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.47
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.47
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.47
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.46
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.46
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.46
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.46
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.46
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.45
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.45
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.45
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.45
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.45
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.44
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.44
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.44
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.44
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.43
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.43
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.42
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.42
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.42
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.42
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.42
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.41
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.41
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.41
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.41
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.41
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.4
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.4
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.4
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.4
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.39
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.39
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.38
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.38
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.38
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.37
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.37
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.36
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.35
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.35
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.35
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.35
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.34
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.34
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.34
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.34
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.34
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.33
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.33
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.33
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.33
3ocj_A	305	Putative exported protein; structural genomics, PS	98.32
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.32
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.31
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.31
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.3
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.3
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.3
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.3
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.3
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.29
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.29
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.29
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.29
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.29
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.29
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.29
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.28
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.28
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.28
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.28
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.27
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.27
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.27
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.27
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.26
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.26
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.25
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.25
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.25
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.24
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.24
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.24
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.23
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.23
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.22
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.21
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.21
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.21
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.18
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.18
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.17
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.17
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.16
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.15
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.15
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.13
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.13
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.13
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.11
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.11
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.09
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.09
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.08
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.08
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.08
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.05
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.05
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.04
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.04
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.03
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.03
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.03
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.01
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.01
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.0
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.0
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.0
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.99
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.99
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.97
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.95
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.95
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	97.94
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.94
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.94
2o07_A	304	Spermidine synthase; structural genomics, structur	97.92
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.9
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.9
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.86
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.86
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.86
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.86
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.85
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.83
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.83
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.83
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.83
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.82
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.79
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.77
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.74
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.73
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.73
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.73
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.72
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.72
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.71
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.71
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.68
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.66
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.66
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.52
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.5
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.48
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.46
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.46
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.43
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.43
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.36
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.36
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.3
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.3
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.29
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.28
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.2
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.1
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.1
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.1
3khk_A	544	Type I restriction-modification system methylation	97.09
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.07
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.03
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.02
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.97
3lkd_A	542	Type I restriction-modification system methyltrans	96.9
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	96.86
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.66
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.61
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.4
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.39
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.14
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.14
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.08
3ufb_A	530	Type I restriction-modification system methyltran	95.99
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	95.97
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	95.92
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	95.75
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.7
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.47
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	95.43
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	95.31
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	95.24
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.03
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.01
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.01
3dme_A	369	Conserved exported protein; structural genomics, P	94.96
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.71
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.53
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.44
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	94.27
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	94.24
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.22
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	94.18
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.05
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.02
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	93.85
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.7
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.6
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.58
2e1m_C	181	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	93.53
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	93.46
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.45
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	93.43
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.31
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	93.18
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.16
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	93.09
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.09
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	93.03
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	92.87
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	92.72
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.65
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.61
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	92.55
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	92.53
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	92.45
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.4
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	92.4
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.39
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	92.29
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.29
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	92.27
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.19
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	92.16
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.13
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	92.05
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	91.87
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	91.83
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	91.76
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	91.66
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	91.64
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	91.52
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	91.42
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	91.39
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	91.32
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	91.27
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	91.27
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	91.21
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	91.2
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	90.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	90.97
1fec_A	490	Trypanothione reductase; redox-active center, oxid	90.82
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	90.68
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	90.65
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	90.65
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	90.61
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	90.54
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	90.49
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	90.43
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	90.18
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	90.17
4dna_A	463	Probable glutathione reductase; structural genomic	90.12
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	90.11
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	89.93
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	89.87
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	89.68
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	89.66
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	89.64
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	89.62
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	89.61
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	89.55
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	89.51
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	89.36
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	89.23
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	89.23
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	89.16
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	89.11
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	89.11
4eye_A	342	Probable oxidoreductase; structural genomics, niai	89.07
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	89.01
2cul_A	232	Glucose-inhibited division protein A-related PROT	88.99
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	88.98
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	88.95
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	88.73
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	88.45
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	88.36
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	88.23
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	88.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	87.96
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	87.9
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	87.84
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	87.82
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	87.78
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	87.77
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	87.73
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	87.7
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	87.69
1ojt_A	482	Surface protein; redox-active center, glycolysis,	87.64
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	87.62
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	87.6
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	87.48
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	87.47
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	87.38
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	87.37
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	87.36
3cnu_A	116	Predicted coding region AF_1534; structural GE MCS	87.29
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	87.2
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	87.16
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	87.14
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	87.13
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	87.11
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	87.06
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	86.94
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	86.88
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	86.87
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	86.79
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	86.74
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	86.25
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	86.02
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	85.99
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	85.97
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	85.85
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	85.63
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	85.62
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	85.61
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	85.57
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	85.51
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	85.09
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	84.91
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	84.88
3bkr_A	126	Sterol carrier protein-2 like-3; mosquito, fatty a	84.67
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	84.64
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	84.63
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	84.61
3atr_A	453	Conserved archaeal protein; saturating double bond	84.6
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	84.53
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	84.5
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	84.48
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	84.05
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	83.69
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	83.67
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	83.48
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	83.44
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	83.25
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	83.12
1ikt_A	120	Estradiol 17 beta-dehydrogenase 4; ALFA-beta fold,	83.03
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	83.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	82.86
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	82.72
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	82.28
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	82.24
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	82.15
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	82.12
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	82.07
4hb9_A	412	Similarities with probable monooxygenase; flavin,	82.07
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	81.77
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	81.75
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	81.73
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	81.52
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	81.32
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	81.13

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.87  E-value=3.7e-22  Score=213.94  Aligned_cols=261  Identities=13%  Similarity=0.120  Sum_probs=178.6

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHH
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIA  142 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~  142 (602)
                      +.+|+.+|+++++++ .+.+.++.|++.++|+ ++   .++|+.++++++..++++....++.+ ++.+|+++++++|++
T Consensus       141 ~~~s~~~~l~~~~~~-~~~~~~~~~~~~~~~~-~~---~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~  214 (424)
T 2b9w_A          141 LMLPFDEFLALNGCE-AARDLWINPFTAFGYG-HF---DNVPAAYVLKYLDFVTMMSFAKGDLW-TWADGTQAMFEHLNA  214 (424)
T ss_dssp             GGSBHHHHHHHTTCG-GGHHHHTTTTCCCCCC-CT---TTSBHHHHHHHSCHHHHHHHHHTCCB-CCTTCHHHHHHHHHH
T ss_pred             hccCHHHHHHhhCcH-HHHHHHHHHHHhhccC-Ch---HhcCHHHHHHhhhHhhhhcccCCceE-EeCChHHHHHHHHHH
Confidence            468999999998776 5778888898887775 33   34688777776654433322223444 689999999999999


Q ss_pred             HHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeEEEecC
Q 036521          143 LLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRD  222 (602)
Q Consensus       143 ~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~vl~~d  222 (602)
                      .+   +.+|+++++|++|.+++++|.|++.+| ++.||+||+|+|+.++.++++  +.+.+++.+++++|.+..+.+...
T Consensus       215 ~l---~~~v~~~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~  288 (424)
T 2b9w_A          215 TL---EHPAERNVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEKFLDYSD--ADDDEREYFSKIIHQQYMVDACLV  288 (424)
T ss_dssp             HS---SSCCBCSCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHHHTTSBC--CCHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             hh---cceEEcCCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHHHhhccC--CCHHHHHHHhcCCcceeEEEEEEe
Confidence            99   678999999999999888899988888 489999999999999988876  567777888999887754332221


Q ss_pred             CC------CCCCC----CCccccccccc-CC-CCCeEEEEeccccccCCCCCCCCCe-------EEEcCCCCCCcce-EE
Q 036521          223 KN------FMPRN----PAAWSAWNFLG-GL-DGKACLTYWLNVLQNIGDGETGLPF-------LVTLNPDHTPNNT-LL  282 (602)
Q Consensus       223 ~~------l~p~~----~~~w~s~n~~~-~~-~~~~~~t~~~~~~~~l~~~~~~~~v-------~~tl~p~~~p~~~-l~  282 (602)
                      ..      ++|.+    ...|..++... ++ +......|.++....+... ..+.+       ++++++. .++.+ ..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~v~~~l~~l~~~-~~~~~~~~  366 (424)
T 2b9w_A          289 KEYPTISGYVPDNMRPERLGHVMVYYHRWADDPHQIITTYLLRNHPDYADK-TQEECRQMVLDDMETFGHP-VEKIIEEQ  366 (424)
T ss_dssp             SSCCSSEEECGGGGSGGGTTSCCEEEECCTTCTTSCEEEEEECCBTTBCCC-CHHHHHHHHHHHHHHTTCC-EEEEEEEE
T ss_pred             ccCCcccccccCCCCCcCCCcceEEeeecCCCCceEEEEEeccCCCccccc-ChHHHHHHHHHHHHHcCCc-cccccccc
Confidence            11      22322    12233333322 22 2345566665543333221 10111       1234432 11111 23


Q ss_pred             EEEccCCCCChhHHHH--HHHHHhhcCCCCeEEeccccCCCCChhHHHHHHHHHHHhc
Q 036521          283 KWSTGHPVPSVAASKA--SLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVL  338 (602)
Q Consensus       283 r~~~~~p~~~~~~~~~--~~~l~~lqg~~gl~~aG~~~g~g~~E~av~SG~~aA~~ll  338 (602)
                      .|.. +|.+.......  ++++..+|+.++|||||+|+++|+||+|++||++||++|+
T Consensus       367 ~w~~-~p~~~~~~~~~G~~~~~~~~~~~~~l~~aG~~~~~g~~e~a~~Sg~~aA~~~l  423 (424)
T 2b9w_A          367 TWYY-FPHVSSEDYKAGWYEKVEGMQGRRNTFYAGEIMSFGNFDEVCHYSKDLVTRFF  423 (424)
T ss_dssp             EEEE-EEECCHHHHHTTHHHHHHHTTTGGGEEECSGGGSCSSHHHHHHHHHHHHHHHT
T ss_pred             ceee-eeccCHHHHhccHHHHHHHHhCCCCceEeccccccccHHHHHHHHHHHHHHhc
Confidence            5654 77777665554  6777888899999999999999999999999999999885

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.81  E-value=2.7e-19  Score=194.55  Aligned_cols=277  Identities=17%  Similarity=0.132  Sum_probs=190.2

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhH-HhhhHHHHHHHHHhcCccc---------------------
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGI-MSFSAFSILSFYRNHHLLQ---------------------  119 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~-~~~p~~~~l~~~~~~g~~~---------------------  119 (602)
                      .+++|+.+|+++ ++++++.+.++.|++.++|+.+++++ ....+..+......++.+.                     
T Consensus       141 ~~~~s~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~  219 (477)
T 3nks_A          141 EPDETVHSFAQR-RLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQA  219 (477)
T ss_dssp             SSCCBHHHHHHH-HHCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHH
T ss_pred             CCCcCHHHHHHH-hhCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhh
Confidence            467999999999 58999999999999999999998876 1111122333333333110                     


Q ss_pred             cCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecChHHHHhhccCC
Q 036521          120 LFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHAPDALRILGNQ  198 (602)
Q Consensus       120 ~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~  198 (602)
                      ......++.+.||+++++++|++.+.++|.+|+++++|++|++++++ |.|+++++ ++.||+||+|+|++.+.++++. 
T Consensus       220 ~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~-~~~ad~vv~a~p~~~~~~ll~~-  297 (477)
T 3nks_A          220 LAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS-SLEADHVISAIPASVLSELLPA-  297 (477)
T ss_dssp             HHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSC-EEEESEEEECSCHHHHHHHSCG-
T ss_pred             cccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCe-EEEcCEEEECCCHHHHHHhccc-
Confidence            01123578999999999999999999889999999999999998777 88877544 7999999999999999999985 


Q ss_pred             CCHHHHhhccCccccceeEE-EecCCCCCCCCC---------C------ccccccccc--CCCCCeEEEEecccc-----
Q 036521          199 STFEEKRLLGAFQYVYSDIF-LHRDKNFMPRNP---------A------AWSAWNFLG--GLDGKACLTYWLNVL-----  255 (602)
Q Consensus       199 ~~~~~~~~l~~~~y~~~~~v-l~~d~~l~p~~~---------~------~w~s~n~~~--~~~~~~~~t~~~~~~-----  255 (602)
                      ..+...+.+.+++|.++.++ +.++..++|...         .      .|.+..+..  .+++...++++++..     
T Consensus       298 ~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~  377 (477)
T 3nks_A          298 EAAPLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTL  377 (477)
T ss_dssp             GGHHHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHH
T ss_pred             cCHHHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCcccccc
Confidence            67788889999999887644 456655443210         0      122222221  122445566655421     


Q ss_pred             c----cCCCCCCCCCeE----EEcCCCCCCcc-eEEEEEccCCCCChhHHHHHHHHHh-hc-CCCCeEEeccccCCCCCh
Q 036521          256 Q----NIGDGETGLPFL----VTLNPDHTPNN-TLLKWSTGHPVPSVAASKASLELDH-IQ-GKRGIWFCEAYQGYGFHE  324 (602)
Q Consensus       256 ~----~l~~~~~~~~v~----~tl~p~~~p~~-~l~r~~~~~p~~~~~~~~~~~~l~~-lq-g~~gl~~aG~~~g~g~~E  324 (602)
                      .    .+++++..+.+.    ..++....|.. .+++|.++.|+|++++......+.. +. ..+++++||||+.+.-+|
T Consensus       378 ~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv~  457 (477)
T 3nks_A          378 EASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVN  457 (477)
T ss_dssp             HHSSCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSHH
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcHH
Confidence            0    112211101111    11232222332 4789999999999999887776654 33 356899999998433389


Q ss_pred             hHHHHHHHHHHHhcCCc
Q 036521          325 DGLKAGMIAAHGVLGKR  341 (602)
Q Consensus       325 ~av~SG~~aA~~ll~~~  341 (602)
                      +|+.||.++|++|++.+
T Consensus       458 ~a~~sg~~aA~~il~~~  474 (477)
T 3nks_A          458 DCIESGRQAAVSVLGTE  474 (477)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999998753

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.80  E-value=4e-19  Score=192.56  Aligned_cols=273  Identities=16%  Similarity=0.203  Sum_probs=180.4

Q ss_pred             CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhH-HHHHHHHHhcCcccc----------------CCC
Q 036521           61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSA-FSILSFYRNHHLLQL----------------FGR  123 (602)
Q Consensus        61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~-~~~l~~~~~~g~~~~----------------~~~  123 (602)
                      ..+++|+.+|+++. ++.++.+.++.|++.++|+.+++++..... ..+..+...++.+..                ...
T Consensus       146 ~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (470)
T 3i6d_A          146 TKDDQSLGEFFRRR-VGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQ  224 (470)
T ss_dssp             SSSCCBHHHHHHHH-SCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-----------------------------
T ss_pred             CCCCcCHHHHHHHh-cCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCC
Confidence            34689999999984 899999999999999999998887521111 111112222221100                113


Q ss_pred             CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHH
Q 036521          124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEE  203 (602)
Q Consensus       124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~  203 (602)
                      +.++.+.+|++.++++|++.+.+  ++|+++++|++|++++++|.|++.+|+++.||+||+|+|++.+.+++.. +  ..
T Consensus       225 ~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~-~--~~  299 (470)
T 3i6d_A          225 GQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSE-L--PA  299 (470)
T ss_dssp             --EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHHHHHHTTT-S--TT
T ss_pred             ceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHHHHHHcCC-c--hh
Confidence            46789999999999999999842  6999999999999998899999999988999999999999999999885 3  24


Q ss_pred             HhhccCccccceeEE-EecCCCCCCC-----------CC------Cccccccccc-CCCCCeEEEEecccc-----ccCC
Q 036521          204 KRLLGAFQYVYSDIF-LHRDKNFMPR-----------NP------AAWSAWNFLG-GLDGKACLTYWLNVL-----QNIG  259 (602)
Q Consensus       204 ~~~l~~~~y~~~~~v-l~~d~~l~p~-----------~~------~~w~s~n~~~-~~~~~~~~t~~~~~~-----~~l~  259 (602)
                      .+.+.+++|.++..+ +.++..+++.           ..      ..|.+..+.. .+++...++.+++..     ..++
T Consensus       300 ~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~  379 (470)
T 3i6d_A          300 ISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLS  379 (470)
T ss_dssp             HHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTSC
T ss_pred             hHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCCC
Confidence            577889999887654 4566554322           11      1243333332 234455555554321     1122


Q ss_pred             CCCCCCCeEE---Ec-CCCCCCc-ceEEEEEccCCCCChhHHHHHHHHHh-h-cCCCCeEEeccccCCCCChhHHHHHHH
Q 036521          260 DGETGLPFLV---TL-NPDHTPN-NTLLKWSTGHPVPSVAASKASLELDH-I-QGKRGIWFCEAYQGYGFHEDGLKAGMI  332 (602)
Q Consensus       260 ~~~~~~~v~~---tl-~p~~~p~-~~l~r~~~~~p~~~~~~~~~~~~l~~-l-qg~~gl~~aG~~~g~g~~E~av~SG~~  332 (602)
                      +++..+.+..   .+ .....|. ..+++|.++.|+|++++......+.. + +..++|++||+|+....+|+|+.||.+
T Consensus       380 ~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv~~a~~sG~~  459 (470)
T 3i6d_A          380 DNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGKA  459 (470)
T ss_dssp             HHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCHHHHHHHHHH
Confidence            2111011111   11 2211222 24789999999999988766555543 3 346799999998854348999999999


Q ss_pred             HHHHhcC
Q 036521          333 AAHGVLG  339 (602)
Q Consensus       333 aA~~ll~  339 (602)
                      +|++|+.
T Consensus       460 aA~~i~~  466 (470)
T 3i6d_A          460 AVSDALT  466 (470)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999865

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.78  E-value=3.8e-19  Score=181.87  Aligned_cols=110  Identities=36%  Similarity=0.607  Sum_probs=104.1

Q ss_pred             hHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHh
Q 036521          491 LAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVR  570 (602)
Q Consensus       491 ~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~  570 (602)
                      .+..+++|++|||+.+++|+.|+++.|.|+|++|.....+++++|.++++.+++++++++|++|||||||+|.++..+++
T Consensus        13 ~~~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~   92 (302)
T 3hem_A           13 LKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVA   92 (302)
T ss_dssp             CCCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHH
T ss_pred             ccchHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          571 QTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       571 ~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++|++|+|||+|++|++.|+++++..|+.+
T Consensus        93 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  122 (302)
T 3hem_A           93 EYDVNVIGLTLSENQYAHDKAMFDEVDSPR  122 (302)
T ss_dssp             HHCCEEEEEECCHHHHHHHHHHHHHSCCSS
T ss_pred             hCCCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            778999999999999999999999988764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.78  E-value=1.3e-18  Score=189.29  Aligned_cols=273  Identities=15%  Similarity=0.162  Sum_probs=182.9

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHH-hhhHHHHHHHHHhcCcc-c---------------cCCC-
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIM-SFSAFSILSFYRNHHLL-Q---------------LFGR-  123 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~-~~p~~~~l~~~~~~g~~-~---------------~~~~-  123 (602)
                      .+++|+.+|+++. +++++.+.++.|++.++|+++++++. ...+..+..+...++.+ .               .... 
T Consensus       146 ~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (478)
T 2ivd_A          146 GVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAP  224 (478)
T ss_dssp             TCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSC
T ss_pred             CCCCCHHHHHHHh-hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCcccccc
Confidence            4679999999994 89999999999999999999887762 22222222222222210 0               0112 


Q ss_pred             ---CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe---CCCcEEecCEEEEecChHHHHhhccC
Q 036521          124 ---PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR---GDGFQGFYDGCIMAVHAPDALRILGN  197 (602)
Q Consensus       124 ---~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~---~~g~~~~ad~VI~A~p~~~a~~ll~~  197 (602)
                         ..++.++||+++++++|++.+   |++|+++++|++|.+++++|.|++   .+|+++.||+||+|+|+..+.++++.
T Consensus       225 ~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll~~  301 (478)
T 2ivd_A          225 KLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRP  301 (478)
T ss_dssp             CCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTT
T ss_pred             cccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHHHHHhhc
Confidence               567889999999999999999   779999999999999888898887   67778999999999999999999974


Q ss_pred             CCCHHHHhhccCcccccee-EEEecCCCCCCCC-C---------------Cccccccccc-CCCCCeEEEEeccccc---
Q 036521          198 QSTFEEKRLLGAFQYVYSD-IFLHRDKNFMPRN-P---------------AAWSAWNFLG-GLDGKACLTYWLNVLQ---  256 (602)
Q Consensus       198 ~~~~~~~~~l~~~~y~~~~-~vl~~d~~l~p~~-~---------------~~w~s~n~~~-~~~~~~~~t~~~~~~~---  256 (602)
                       +.+...+.+++++|.++. +.++++..+++.. .               ..|.+..+.. .+++...++++++...   
T Consensus       302 -l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~  380 (478)
T 2ivd_A          302 -LDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPG  380 (478)
T ss_dssp             -TCHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGG
T ss_pred             -cCHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCcc
Confidence             777888889999998774 4456776544431 0               0122222221 1334455565553211   


Q ss_pred             --cCCCCCCCCCeE----EEcCCCCCCcc-eEEEEEccCCCCChhHHHHHHHHHh-hcCCCCeEEecccc-CCCCChhHH
Q 036521          257 --NIGDGETGLPFL----VTLNPDHTPNN-TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCEAYQ-GYGFHEDGL  327 (602)
Q Consensus       257 --~l~~~~~~~~v~----~tl~p~~~p~~-~l~r~~~~~p~~~~~~~~~~~~l~~-lqg~~gl~~aG~~~-g~g~~E~av  327 (602)
                        ..++++..+.+.    ..+.....|.. .+.+|....|.|++++......+.. +...++||+||+|+ +.| +|+|+
T Consensus       381 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~g-v~gA~  459 (478)
T 2ivd_A          381 LVEQDEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVG-LNDCI  459 (478)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCS-HHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCC-HHHHH
Confidence              111100000011    11222222322 4679999999998887655554433 22358999999998 555 89999


Q ss_pred             HHHHHHHHHhcCC
Q 036521          328 KAGMIAAHGVLGK  340 (602)
Q Consensus       328 ~SG~~aA~~ll~~  340 (602)
                      .||.++|++|++.
T Consensus       460 ~SG~~aA~~i~~~  472 (478)
T 2ivd_A          460 RNAAQLADALVAG  472 (478)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999663

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.78  E-value=1.3e-18  Score=189.14  Aligned_cols=272  Identities=12%  Similarity=0.144  Sum_probs=183.6

Q ss_pred             CCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHH-hhhHHHHHHHHHhcCcccc-------------------
Q 036521           61 IDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIM-SFSAFSILSFYRNHHLLQL-------------------  120 (602)
Q Consensus        61 ~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~-~~p~~~~l~~~~~~g~~~~-------------------  120 (602)
                      ..+++|+.+|++++ +++++.+.++.|++.++|+.+++++. ...+..+..+...++.+..                   
T Consensus       144 ~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  222 (475)
T 3lov_A          144 PEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTI  222 (475)
T ss_dssp             CSSCCBHHHHHHHH-HCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC------------
T ss_pred             CCCCcCHHHHHHHH-hCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcccccccccccccc
Confidence            34689999999984 89999999999999999999988762 1122234344433332110                   


Q ss_pred             CCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCC
Q 036521          121 FGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQST  200 (602)
Q Consensus       121 ~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~  200 (602)
                      ..+++++.+++|+++++++|++.+.+  ++|+++++|++|++++++|.|++.+| ++.||+||+|+|++.+.++++. +.
T Consensus       223 ~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~~-~~  298 (475)
T 3lov_A          223 KATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQLLPD-AH  298 (475)
T ss_dssp             --CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHHHCTT-SC
T ss_pred             cCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHHHcCc-cC
Confidence            12467899999999999999999942  69999999999999999999999888 7999999999999999999985 32


Q ss_pred             HHHHhhccCccccceeEE-EecCCCC----------CCCCCC------cccccccccCCCCCeEEEEeccc-----cccC
Q 036521          201 FEEKRLLGAFQYVYSDIF-LHRDKNF----------MPRNPA------AWSAWNFLGGLDGKACLTYWLNV-----LQNI  258 (602)
Q Consensus       201 ~~~~~~l~~~~y~~~~~v-l~~d~~l----------~p~~~~------~w~s~n~~~~~~~~~~~t~~~~~-----~~~l  258 (602)
                       .  +.+.+++|.++..+ +.++..+          .|....      .|.+..+....++...++.+++.     ...+
T Consensus       299 -~--~~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~~~~~~~~~~  375 (475)
T 3lov_A          299 -L--PELEQLTTHSTATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGNDHLVHE  375 (475)
T ss_dssp             -C--HHHHTCCEEEEEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECBTTBCGGGGS
T ss_pred             -H--HHHhcCCCCeEEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCCCCCCcccCC
Confidence             1  67888999887644 4555543          111110      23332232211113344444422     1112


Q ss_pred             CCCCCCCCeE----EEcCCCCCCc-ceEEEEEccCCCCChhHHHHHHHHHh-h-cCCCCeEEeccccCCCCChhHHHHHH
Q 036521          259 GDGETGLPFL----VTLNPDHTPN-NTLLKWSTGHPVPSVAASKASLELDH-I-QGKRGIWFCEAYQGYGFHEDGLKAGM  331 (602)
Q Consensus       259 ~~~~~~~~v~----~tl~p~~~p~-~~l~r~~~~~p~~~~~~~~~~~~l~~-l-qg~~gl~~aG~~~g~g~~E~av~SG~  331 (602)
                      ++++..+.+.    ..+.....|. ..+++|.+..|+|++++......+.. + +..+++++||+|+....+|+|++||.
T Consensus       376 ~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~a~~sG~  455 (475)
T 3lov_A          376 SDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVASAK  455 (475)
T ss_dssp             CHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHHHHH
Confidence            2211101111    1122222232 24789999999999998776655544 3 34679999999885434899999999


Q ss_pred             HHHHHhcCC
Q 036521          332 IAAHGVLGK  340 (602)
Q Consensus       332 ~aA~~ll~~  340 (602)
                      ++|++|++.
T Consensus       456 ~aA~~i~~~  464 (475)
T 3lov_A          456 TMIESIELE  464 (475)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.76  E-value=1.3e-18  Score=176.40  Aligned_cols=110  Identities=35%  Similarity=0.609  Sum_probs=102.9

Q ss_pred             hHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHh
Q 036521          491 LAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVR  570 (602)
Q Consensus       491 ~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~  570 (602)
                      .+.++++|++|||..++||+.|+++.|.|+|++|+.+..+++++|.++++.+++.++++++.+|||||||+|.++..+++
T Consensus         5 ~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~   84 (287)
T 1kpg_A            5 LKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVE   84 (287)
T ss_dssp             SCCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHH
T ss_pred             ccccHHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHH
Confidence            34567899999999999999999999999999999889999999999999999999999999999999999999999997


Q ss_pred             ccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          571 QTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       571 ~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.|++|+|||+|++|++.|++++++.|+.+
T Consensus        85 ~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~  114 (287)
T 1kpg_A           85 KYDVNVVGLTLSKNQANHVQQLVANSENLR  114 (287)
T ss_dssp             HHCCEEEEEESCHHHHHHHHHHHHTCCCCS
T ss_pred             HcCCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            678999999999999999999999887753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.75  E-value=2.4e-18  Score=177.18  Aligned_cols=114  Identities=33%  Similarity=0.546  Sum_probs=98.7

Q ss_pred             ccCchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHH
Q 036521          487 RRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAI  566 (602)
Q Consensus       487 ~~~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~  566 (602)
                      ++|+...++++|++|||..++||+.++++.+.|++++|+....+++++|.++++.+++.++++++.+|||||||+|.++.
T Consensus        27 ~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~  106 (318)
T 2fk8_A           27 SPTKTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMR  106 (318)
T ss_dssp             -----------CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHH
T ss_pred             ccCChhhhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHH
Confidence            78899999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             HHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          567 EVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       567 ~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .++++.|++|+|+|+|++|++.|+++++..|+.+
T Consensus       107 ~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  140 (318)
T 2fk8_A          107 RAVERFDVNVIGLTLSKNQHARCEQVLASIDTNR  140 (318)
T ss_dssp             HHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSS
T ss_pred             HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            9998768999999999999999999999888754

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=173.76  Aligned_cols=209  Identities=11%  Similarity=0.059  Sum_probs=145.2

Q ss_pred             CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccC---CC
Q 036521          123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGN---QS  199 (602)
Q Consensus       123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~---~~  199 (602)
                      ...++...+|++++++++++.+   |.+|+++++|++|++++++|+|++.+|+++.||.||+|+|++++.+|+..   .+
T Consensus       101 ~~~~~~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l  177 (342)
T 3qj4_A          101 GDCNFVAPQGISSIIKHYLKES---GAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI  177 (342)
T ss_dssp             CCEEEECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS
T ss_pred             CccceecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhccccccc
Confidence            3457888999999999999998   88999999999999999999999888877899999999999999999974   13


Q ss_pred             CHHHHhhccCccccceeE-EEecCCCC----------CCCCC-CcccccccccCC----CCCeEEEEeccc-----cccC
Q 036521          200 TFEEKRLLGAFQYVYSDI-FLHRDKNF----------MPRNP-AAWSAWNFLGGL----DGKACLTYWLNV-----LQNI  258 (602)
Q Consensus       200 ~~~~~~~l~~~~y~~~~~-vl~~d~~l----------~p~~~-~~w~s~n~~~~~----~~~~~~t~~~~~-----~~~l  258 (602)
                      .+...+.+++++|.++++ +++++...          +|... ..|..++..++.    ++...+++.++.     ...+
T Consensus       178 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~  257 (342)
T 3qj4_A          178 SECQRQQLEAVSYSSRYALGLFYEAGTKIDVPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEH  257 (342)
T ss_dssp             CHHHHHHHHTCCBCCEEEEEEECSSCC--CCSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTS
T ss_pred             CHHHHHHHhcCCccccEEEEEEECCCCccCCceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcC
Confidence            446788999999999876 56777542          12222 345444443331    122355555542     1112


Q ss_pred             CCCCCCCCeE----EEcCCCCCCcc-eEEEEEccCCCCChhHHHHHHHHHhh--cCCCCeEEeccccCCCCChhHHHHHH
Q 036521          259 GDGETGLPFL----VTLNPDHTPNN-TLLKWSTGHPVPSVAASKASLELDHI--QGKRGIWFCEAYQGYGFHEDGLKAGM  331 (602)
Q Consensus       259 ~~~~~~~~v~----~tl~p~~~p~~-~l~r~~~~~p~~~~~~~~~~~~l~~l--qg~~gl~~aG~~~g~g~~E~av~SG~  331 (602)
                      ++++..+.+.    ..+.....|.. .++||+++.|+|...     .+...+  ...++|++||||+..+.+|+||+||.
T Consensus       258 ~~~~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~-----~~~~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~  332 (342)
T 3qj4_A          258 SIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAA-----NCPGQMTLHHKPFLACGGDGFTQSNFDGCITSAL  332 (342)
T ss_dssp             CHHHHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCS-----SSCSCEEEETTTEEEECSGGGSCSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCCCceeeeccccccccccccC-----CCcceeEecCCccEEEEccccCCCCccHHHHHHH
Confidence            2211101111    11222223332 488999999998651     012222  46789999999997666899999999


Q ss_pred             HHHHHhcC
Q 036521          332 IAAHGVLG  339 (602)
Q Consensus       332 ~aA~~ll~  339 (602)
                      ++|++|+.
T Consensus       333 ~aa~~i~~  340 (342)
T 3qj4_A          333 CVLEALKN  340 (342)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99999865

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.70  E-value=2.7e-17  Score=173.86  Aligned_cols=227  Identities=8%  Similarity=-0.013  Sum_probs=155.8

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHH-HHHHHhcCccccCCCCcEE-EecCCcHhHHHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSI-LSFYRNHHLLQLFGRPQWL-TVRSRSHSYVNK  139 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~-l~~~~~~g~~~~~~~~~~~-~~~gG~~~l~~~  139 (602)
                      .+++|+++|+.++ +++++.+.++.|++.++|+++++++....+..+ +.+....+.    ...++. .++||+++++++
T Consensus       130 ~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~----~~~~~~~~p~gG~~~l~~~  204 (384)
T 2bi7_A          130 ADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNY----FNHKFQGMPKCGYTQMIKS  204 (384)
T ss_dssp             SSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCS----CCCSEEEEETTHHHHHHHH
T ss_pred             CCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhcccccccccccc----ccccccEEECcCHHHHHHH
Confidence            4678999999986 899999999999999999999988743332100 000000111    123454 889999999999


Q ss_pred             HHHHHhcCCCeEEeCCcee-EEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeEE
Q 036521          140 VIALLESLGCQIKTGCEVC-SVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIF  218 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~-~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~v  218 (602)
                      |++.+   |.+|+++++|. +|.+               .||+||+|+|++++.++           .++.++|.++.++
T Consensus       205 l~~~~---g~~I~l~~~V~~~i~~---------------~~d~VI~a~p~~~~~~~-----------~lg~l~y~s~~~v  255 (384)
T 2bi7_A          205 ILNHE---NIKVDLQREFIVEERT---------------HYDHVFYSGPLDAFYGY-----------QYGRLGYRTLDFK  255 (384)
T ss_dssp             HHCST---TEEEEESCCCCGGGGG---------------GSSEEEECSCHHHHTTT-----------TTCCCCEEEEEEE
T ss_pred             HHhcC---CCEEEECCeeehhhhc---------------cCCEEEEcCCHHHHHHh-----------hcCCCCcceEEEE
Confidence            99855   78999999999 7753               29999999999998876           3678999998765


Q ss_pred             Ee-cCCCCCCCCCCccccc-ccccCCCCCeEEEEeccccccCCCCCCCCCeEEEcCCCCCCcceEEEEE----ccCCCCC
Q 036521          219 LH-RDKNFMPRNPAAWSAW-NFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWS----TGHPVPS  292 (602)
Q Consensus       219 l~-~d~~l~p~~~~~w~s~-n~~~~~~~~~~~t~~~~~~~~l~~~~~~~~v~~tl~p~~~p~~~l~r~~----~~~p~~~  292 (602)
                      .+ .|+.+.+      .+| |+..+......++...+...++..    +....++..       ...|.    +.+|+++
T Consensus       256 ~~~~d~~~~~------~~~~n~~~~~~~~~ri~~~~~~~~~~~~----~~~~v~~e~-------~~~~~~~~~p~ypv~~  318 (384)
T 2bi7_A          256 KFTYQGDYQG------CAVMNYCSVDVPYTRITEHKYFSPWEQH----DGSVCYKEY-------SRACEENDIPYYPIRQ  318 (384)
T ss_dssp             EEEEESCSSS------SSEEEECSTTSSSSEEEEGGGGCTTSCC----SEEEEEEEE-------EEECCTTCCCCEECCC
T ss_pred             EEEeCCCCCC------CEEEEecCCCCCeeeEEEeeccCCCCCC----CCEEEEEEE-------eccccCCCccccccCC
Confidence            54 3533321      334 665322222334433222112211    122222221       12343    4588899


Q ss_pred             hhHHHHHHHHHhhcCC-CCeEEeccc--cCCCCChhHHHHHHHHHHHhcC
Q 036521          293 VAASKASLELDHIQGK-RGIWFCEAY--QGYGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       293 ~~~~~~~~~l~~lqg~-~gl~~aG~~--~g~g~~E~av~SG~~aA~~ll~  339 (602)
                      .++.+.++++..+++. +++|+||+|  +.++.||||+.||+++|+++++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~d~i~sa~~~a~~~~~  368 (384)
T 2bi7_A          319 MGEMALLEKYLSLAENETNITFVGRLGTYRYLDMDVTIAEALKTAEVYLN  368 (384)
T ss_dssp             HHHHHHHHHHHHHHTTCSSEEECHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCEEEccccEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            9999999999988776 899999997  4577799999999999999865

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.69  E-value=4.1e-17  Score=171.48  Aligned_cols=231  Identities=13%  Similarity=0.082  Sum_probs=157.3

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHH-HHHHHhcCccccCCCCcEE-EecCCcHhHHHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSI-LSFYRNHHLLQLFGRPQWL-TVRSRSHSYVNK  139 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~-l~~~~~~g~~~~~~~~~~~-~~~gG~~~l~~~  139 (602)
                      .+++|+++|+.++ +++++.+.++.|++.++|+++++++....+..+ ..+...++    ...++|. .++||+++++++
T Consensus       126 ~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~----~~~~~~~~~p~gG~~~l~~~  200 (367)
T 1i8t_A          126 KVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNN----YFSDRYQGIPVGGYTKLIEK  200 (367)
T ss_dssp             CCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCC----SCCCSEEECBTTCHHHHHHH
T ss_pred             CCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccc----cccchhhcccCCCHHHHHHH
Confidence            3678999999996 899999999999999999999988743222100 00000000    0134554 789999999999


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeEEE
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFL  219 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~vl  219 (602)
                      |++     |.+|+++++|.+|.+.   |        .+.||+||+|+|++++.++           .+++++|.++.++.
T Consensus       201 l~~-----g~~i~l~~~V~~i~~~---v--------~~~~D~VV~a~p~~~~~~~-----------~l~~l~y~s~~~v~  253 (367)
T 1i8t_A          201 MLE-----GVDVKLGIDFLKDKDS---L--------ASKAHRIIYTGPIDQYFDY-----------RFGALEYRSLKFET  253 (367)
T ss_dssp             HHT-----TSEEECSCCGGGSHHH---H--------HTTEEEEEECSCHHHHTTT-----------TTCCCCEEEEEEEE
T ss_pred             Hhc-----CCEEEeCCceeeechh---h--------hccCCEEEEeccHHHHHHH-----------hhCCCCCceEEEEE
Confidence            987     4699999999988632   2        1458999999999987643           47789999988776


Q ss_pred             e-cCCCCCCCCCCcccccccccCCCCCeEEEEeccccccCCCCCCCCCeEEEcCCCCCCcceEEEE----EccCCCCChh
Q 036521          220 H-RDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKW----STGHPVPSVA  294 (602)
Q Consensus       220 ~-~d~~l~p~~~~~w~s~n~~~~~~~~~~~t~~~~~~~~l~~~~~~~~v~~tl~p~~~p~~~l~r~----~~~~p~~~~~  294 (602)
                      + .|...+|.  ..|  +|+..+......++.+.+-... +.    +..+.+++.       ...|    .+.+|+++.+
T Consensus       254 ~~~d~~~~~~--~~~--~~~~~~~~~~~ri~~~~~~~~~-~~----~~~~v~~e~-------~~~~~~~~~p~ypv~~~~  317 (367)
T 1i8t_A          254 ERHEFPNFQG--NAV--INFTDANVPYTRIIEHKHFDYV-ET----KHTVVTKEY-------PLEWKVGDEPYYPVNDNK  317 (367)
T ss_dssp             EEESSSCSSS--SSE--EEECCTTSSCSEEEEGGGGSCC-CC----SCEEEEEEE-------EEECCTTSCCCEECCSHH
T ss_pred             EEeccccCCC--CeE--EEeCCCCCceeeEEeecccCCC-CC----CCEEEEEEE-------ecccCCCCeeecccCChh
Confidence            6 58776653  233  3333222122333433221111 11    223333321       1123    2457888889


Q ss_pred             HHHHHHHHHh-hcCCCCeEEeccc--cCCCCChhHHHHHHHHHHHhcCC
Q 036521          295 ASKASLELDH-IQGKRGIWFCEAY--QGYGFHEDGLKAGMIAAHGVLGK  340 (602)
Q Consensus       295 ~~~~~~~l~~-lqg~~gl~~aG~~--~g~g~~E~av~SG~~aA~~ll~~  340 (602)
                      +.+.++++.. +++.+++|+||.|  ++++.||||++||+++|++++..
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~Gr~~~~~y~~~~d~i~sa~~~a~~~~~~  366 (367)
T 1i8t_A          318 NMELFKKYRELASREDKVIFGGRLAEYKYYDMHQVISAALYQVKNIMST  366 (367)
T ss_dssp             HHHHHHHHHHHHHHCTTEEECSTTTTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhcCCCEEEcccceeeEecCHHHHHHHHHHHHHHHhcc
Confidence            9998888877 5788999999998  67778999999999999998754

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.69  E-value=1e-15  Score=168.40  Aligned_cols=268  Identities=14%  Similarity=0.059  Sum_probs=172.1

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCcc----ccCCCCcEEEecCCcHhHHH
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLL----QLFGRPQWLTVRSRSHSYVN  138 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~----~~~~~~~~~~~~gG~~~l~~  138 (602)
                      +++|+++|++++..++.+ +.++.+++.++++.++.++   ++.+++.++..++..    ....+.+++.+.||++++++
T Consensus       144 ~~~s~~~~l~~~~~~~~~-~~~~~~~~~~~~g~~~~~~---s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~  219 (520)
T 1s3e_A          144 DNMTMKELLDKLCWTESA-KQLATLFVNLCVTAETHEV---SALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSE  219 (520)
T ss_dssp             HTSBHHHHHHHHCSSHHH-HHHHHHHHHHHHSSCTTTS---BHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHH
T ss_pred             hccCHHHHHHhhCCCHHH-HHHHHHHHhhhcCCChHHh---HHHHHHHHHhhcCchhhhcccCCCcceEEEeCCHHHHHH
Confidence            578999999998776654 6788999999999988764   666777777655421    11234567889999999999


Q ss_pred             HHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccC-CCCHHHHhhccCcccccee-
Q 036521          139 KVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGN-QSTFEEKRLLGAFQYVYSD-  216 (602)
Q Consensus       139 ~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~-~~~~~~~~~l~~~~y~~~~-  216 (602)
                      +|++.+   |.+|+++++|++|..++++|.|++.+|+++.||+||+|+|+..+.+++.. ++.+...+.+.+++|.++. 
T Consensus       220 ~l~~~l---g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp~~~~~~i~~~~~~~~~k  296 (520)
T 1s3e_A          220 RIMDLL---GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIK  296 (520)
T ss_dssp             HHHHHH---GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCBCCEEE
T ss_pred             HHHHHc---CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcceeeCCCCCHHHHHHHHhCCCcceEE
Confidence            999999   78999999999999988899999888888999999999999999888743 2556667888999987754 


Q ss_pred             EEEecCCCCCCCCC----------Ccccccccc--cCCCCCeEEEEeccc-----cccCCCCCCCCCeEE---EcCCCC-
Q 036521          217 IFLHRDKNFMPRNP----------AAWSAWNFL--GGLDGKACLTYWLNV-----LQNIGDGETGLPFLV---TLNPDH-  275 (602)
Q Consensus       217 ~vl~~d~~l~p~~~----------~~w~s~n~~--~~~~~~~~~t~~~~~-----~~~l~~~~~~~~v~~---tl~p~~-  275 (602)
                      +.+.++..+++...          ..+..+.+.  .++.+...++.++..     +..+++++..+.+..   .+.+.. 
T Consensus       297 v~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~  376 (520)
T 1s3e_A          297 CIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLE  376 (520)
T ss_dssp             EEEECSSCGGGGGTEEEEEEECSTTCSCSEEEECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGG
T ss_pred             EEEEeCCCcccCCCCCceeeccCCCCceEEEeeCCCCCCCCCEEEEEccchhhhhhhcCCHHHHHHHHHHHHHHHhCccc
Confidence            55667765543210          011111111  112222233333221     122222111011111   111211 


Q ss_pred             --CCcc-eEEEEEc---cC----CCCChhHHHHHHHHHhh-cCCCCeEEecccc---CCCCChhHHHHHHHHHHHhcC
Q 036521          276 --TPNN-TLLKWST---GH----PVPSVAASKASLELDHI-QGKRGIWFCEAYQ---GYGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       276 --~p~~-~l~r~~~---~~----p~~~~~~~~~~~~l~~l-qg~~gl~~aG~~~---g~g~~E~av~SG~~aA~~ll~  339 (602)
                        .|.. ...+|..   ..    +.+.++.....  ...+ ++.+++||||+++   ..|.+|+|+.||.++|++|+.
T Consensus       377 ~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~--~~~l~~p~~~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~  452 (520)
T 1s3e_A          377 ALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQY--GRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH  452 (520)
T ss_dssp             GGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHH--GGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCccEEEEEeeCCCCCCCCCCccccCCCccccc--hHHHhCCCCCEEEeehhhcCcCcEEhHHHHHHHHHHHHHHHH
Confidence              1221 2345531   11    23444432211  1122 3568999999986   456799999999999999865

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.68  E-value=1.1e-16  Score=175.39  Aligned_cols=268  Identities=12%  Similarity=0.132  Sum_probs=171.6

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHh---hhHHHHHHHHHhcCc---------cccC---------
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMS---FSAFSILSFYRNHHL---------LQLF---------  121 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~---~p~~~~l~~~~~~g~---------~~~~---------  121 (602)
                      +++|+++|++++ +++++.+.++.|++.++|++++++++.   +|.  +..+.+.+|.         +...         
T Consensus       148 ~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  224 (504)
T 1sez_A          148 SHESVSGFFQRH-FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPE--LWNLEKRFGSVILGAIRSKLSPKNEKKQGPPK  224 (504)
T ss_dssp             CCCBHHHHHHHH-HCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHH--HHHHHHHTSCHHHHHHHHTTC----------C
T ss_pred             CCccHHHHHHHH-cCHHHHHHHHHHHHccccCCChHHhhHHHHhHH--HHHHHHHhCCHHHHHHHhhhcccccccccccc
Confidence            569999999985 899999999999999999999887621   222  2222222220         0000         


Q ss_pred             ------CCCcEEEecCCcHhHHHHHHHHHhcCC-CeEEeCCceeEEEecCCe------EEEEeC--CC---cEEecCEEE
Q 036521          122 ------GRPQWLTVRSRSHSYVNKVIALLESLG-CQIKTGCEVCSVLQYDEG------RTEVRG--DG---FQGFYDGCI  183 (602)
Q Consensus       122 ------~~~~~~~~~gG~~~l~~~la~~l~~~g-~~v~l~t~V~~i~~~~~g------v~v~~~--~g---~~~~ad~VI  183 (602)
                            ....++.++||+++|+++|++.|   + ++|+++++|++|..++++      |.|+..  +|   +++.||+||
T Consensus       225 ~~~~~~~~~~~~~~~GG~~~l~~~l~~~l---~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI  301 (504)
T 1sez_A          225 TSANKKRQRGSFSFLGGMQTLTDAICKDL---REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVI  301 (504)
T ss_dssp             CCSCCSTTCSCBEETTCTHHHHHHHHTTS---CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEE
T ss_pred             hhhccccCCceEeeCcHHHHHHHHHHhhc---ccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEE
Confidence                  11246778999999999999988   5 789999999999988877      776653  45   467899999


Q ss_pred             EecChHHHHhhcc----CCCCHHHHhhccCccccceeEE-EecCCCCCCCC-----------C---------Cccccccc
Q 036521          184 MAVHAPDALRILG----NQSTFEEKRLLGAFQYVYSDIF-LHRDKNFMPRN-----------P---------AAWSAWNF  238 (602)
Q Consensus       184 ~A~p~~~a~~ll~----~~~~~~~~~~l~~~~y~~~~~v-l~~d~~l~p~~-----------~---------~~w~s~n~  238 (602)
                      +|+|+..+.+++.    .+..+   ..+..++|.++.++ +.++...++..           .         ..|.+..+
T Consensus       302 ~a~p~~~l~~ll~~~~~~~~~~---~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~s~~~  378 (504)
T 1sez_A          302 MTAPLCDVKSMKIAKRGNPFLL---NFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMF  378 (504)
T ss_dssp             ECSCHHHHHTSEEESSSSBCCC---TTSCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSEEEEHHHHC
T ss_pred             ECCCHHHHHHHhhcccCCcccH---HHHhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccceEEeecccc
Confidence            9999999999983    11222   23777888765433 44443322211           0         01222222


Q ss_pred             cc-CCCCCeEEEEeccc-----cccCCCCCCCCCeEE----EcCCCCCCc-ceEEEEEccCCCCChhHHHHHHHHHh-hc
Q 036521          239 LG-GLDGKACLTYWLNV-----LQNIGDGETGLPFLV----TLNPDHTPN-NTLLKWSTGHPVPSVAASKASLELDH-IQ  306 (602)
Q Consensus       239 ~~-~~~~~~~~t~~~~~-----~~~l~~~~~~~~v~~----tl~p~~~p~-~~l~r~~~~~p~~~~~~~~~~~~l~~-lq  306 (602)
                      .. .+++...++.++..     +..+++++..+.+..    .+.....|. ..+.+|....|+|++.+......+.. .+
T Consensus       379 ~~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~  458 (504)
T 1sez_A          379 PDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEK  458 (504)
T ss_dssp             GGGSCTTEEEEEEEEESTTCGGGTTCCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHH
T ss_pred             CCcCCCCCEEEEEEeCCCCcccccCCCHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHH
Confidence            22 23444444555432     111222101000111    112211232 24679998999999988766555443 34


Q ss_pred             CCCCeEEeccccCCCCChhHHHHHHHHHHHhcC
Q 036521          307 GKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       307 g~~gl~~aG~~~g~g~~E~av~SG~~aA~~ll~  339 (602)
                      ..++|++||+|+..+.+++|+.||.++|++|+.
T Consensus       459 ~~~~l~~aG~~~~g~~v~gai~sG~~aA~~il~  491 (504)
T 1sez_A          459 NLPGLFYAGNHRGGLSVGKALSSGCNAADLVIS  491 (504)
T ss_dssp             HSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEEeecCCCCCHHHHHHHHHHHHHHHHH
Confidence            568999999998655589999999999999965

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.67  E-value=9.5e-16  Score=163.92  Aligned_cols=264  Identities=16%  Similarity=0.100  Sum_probs=168.8

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHH
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIA  142 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~  142 (602)
                      ++.|+.+|++++ ++++..+.++.|++..+++.+++++....+...+......      +  ....+.||++.++++|++
T Consensus       134 ~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~------~--~~~~~~gG~~~l~~~l~~  204 (425)
T 3ka7_A          134 SGSSLQAWIKSQ-VSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRF------G--GTGIPEGGCKGIIDALET  204 (425)
T ss_dssp             CSSBHHHHHHHH-CCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHH------C--SCEEETTSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHh-cCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhc------C--CccccCCCHHHHHHHHHH
Confidence            579999999996 6788888999999999999988776322122222211111      1  234678999999999999


Q ss_pred             HHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecChHHHHhhccCCC----CHHHHhhccCccccceeE
Q 036521          143 LLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHAPDALRILGNQS----TFEEKRLLGAFQYVYSDI  217 (602)
Q Consensus       143 ~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~----~~~~~~~l~~~~y~~~~~  217 (602)
                      .+.++|++|+++++|++|..++++|. |+++ |+++.||+||+|+|+..+.+|++...    .+...+.+.++++.+..+
T Consensus       205 ~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (425)
T 3ka7_A          205 VISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQPSAGIK  283 (425)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEE
T ss_pred             HHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhcCCcccccCCHHHHHHhhCcCCCceEE
Confidence            99999999999999999999888876 6664 66899999999999999999997421    455677778888876543


Q ss_pred             -EEecCCCCCC-------CCC-----Cccccccccc-CCCCCeEEEEeccc-cccCCC-CCCCCCeE---EEcCCCCCCc
Q 036521          218 -FLHRDKNFMP-------RNP-----AAWSAWNFLG-GLDGKACLTYWLNV-LQNIGD-GETGLPFL---VTLNPDHTPN  278 (602)
Q Consensus       218 -vl~~d~~l~p-------~~~-----~~w~s~n~~~-~~~~~~~~t~~~~~-~~~l~~-~~~~~~v~---~tl~p~~~p~  278 (602)
                       .+..+....+       ...     ..++|..++. .|++...++..... ...... ++..+.+.   ..+.|...++
T Consensus       284 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~  363 (425)
T 3ka7_A          284 ICLAADEPLVGHTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPENVKNLESEIEMGLEDLKEIFPGKRYE  363 (425)
T ss_dssp             EEEEESSCSSCSSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGGGGGGHHHHHHHHHHHHHHHSTTCCEE
T ss_pred             EEeecCCCccCcCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccccccccchHHHHHHHHHHHHHhCCCCceE
Confidence             3445544321       111     1223322222 24455554443321 111110 00001111   1223332333


Q ss_pred             c-eEEEEEccCCCCChhHHHHHHHHHhhcCCCCeEEeccccCC--CC-ChhHHHHHHHHHHHhcC
Q 036521          279 N-TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGY--GF-HEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       279 ~-~l~r~~~~~p~~~~~~~~~~~~l~~lqg~~gl~~aG~~~g~--g~-~E~av~SG~~aA~~ll~  339 (602)
                      . .+.+|+.+.|+|++++...   +....+.+|+|+||||+..  |. +|+|+.||+++|++|+|
T Consensus       364 ~~~v~~~~~~~P~~~~~~~~~---~~~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~~  425 (425)
T 3ka7_A          364 VLLIQSYHDEWPVNRAASGTD---PGNETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVLG  425 (425)
T ss_dssp             EEEEEEEBTTBCSBSSCTTCC---CCSBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC---
T ss_pred             EEEEEEECCCccccccccCCC---CCCCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhhC
Confidence            3 4779999999998763211   1112234699999999832  23 89999999999999976

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.63  E-value=1.5e-15  Score=165.96  Aligned_cols=268  Identities=14%  Similarity=0.075  Sum_probs=172.6

Q ss_pred             CCCCHHHHHHhcC--CCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcC--ccccCCCCcEEEecCCcHhHHH
Q 036521           63 RDETLGQFIKSRG--YSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHH--LLQLFGRPQWLTVRSRSHSYVN  138 (602)
Q Consensus        63 ~~~s~~~~l~~~~--~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g--~~~~~~~~~~~~~~gG~~~l~~  138 (602)
                      +++|+.+|+++.+  +++.+ ..++.|++..+++.+++++   ++..++.++...+  +.........+.+.||++++++
T Consensus       184 ~~~s~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~  259 (495)
T 2vvm_A          184 DEMSYSERIDQIRDELSLNE-RSSLEAFILLCSGGTLENS---SFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFAR  259 (495)
T ss_dssp             HTSBHHHHHHHHGGGCCHHH-HHHHHHHHHHHHSSCTTTS---BHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHH
T ss_pred             hhhhHHHHHHHhhccCCHHH-HHHHHHHHHHhcCCCcchh---hHHHHHHHHHHcCCCHHHHHhhhceEEeCCCHHHHHH
Confidence            4789999999987  78775 5788999999999888765   5555666554321  0000011245678999999999


Q ss_pred             HHHHHHhcCC-CeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccC-CCCHHHHhhccCcccccee
Q 036521          139 KVIALLESLG-CQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGN-QSTFEEKRLLGAFQYVYSD  216 (602)
Q Consensus       139 ~la~~l~~~g-~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~-~~~~~~~~~l~~~~y~~~~  216 (602)
                      +|++.+.++| .+|+++++|++|+.++++|.|++.+|+++.||+||+|+|+..+.+++.. ++.+...+.++.+.|.++.
T Consensus       260 ~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~i~~~p~lp~~~~~ai~~~~~~~~~  339 (495)
T 2vvm_A          260 RFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSMCT  339 (495)
T ss_dssp             HHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGGSEEESCCCHHHHHHHHHCCCCCCE
T ss_pred             HHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhheeeCCCCCHHHHHHHHhcCCCcee
Confidence            9999998777 7899999999999988889999888878999999999999999988632 2556667778888886654


Q ss_pred             -EEEecCCCCCC--------CCCCccccccccc--CCCCCeEEEEeccccccCCCCCCCCCeEE---EcCCC-CCCcc-e
Q 036521          217 -IFLHRDKNFMP--------RNPAAWSAWNFLG--GLDGKACLTYWLNVLQNIGDGETGLPFLV---TLNPD-HTPNN-T  280 (602)
Q Consensus       217 -~vl~~d~~l~p--------~~~~~w~s~n~~~--~~~~~~~~t~~~~~~~~l~~~~~~~~v~~---tl~p~-~~p~~-~  280 (602)
                       +++.++..+++        .....   +.+..  .+.+...+..+.+....+..++..+.+..   .+.|. ..|.. .
T Consensus       340 kv~l~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~vl~~~~~~~~~~~~~e~~~~~~~~L~~~~~~~~~~~~~~  416 (495)
T 2vvm_A          340 KVHAEVDNKDMRSWTGIAYPFNKLC---YAIGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPGTFGVKRLV  416 (495)
T ss_dssp             EEEEEESCGGGGGEEEEECSSCSSC---EEEEEEECTTSCEEEEEEECSTTCCCTTTCHHHHHHHHHTTSTTSCCEEEEE
T ss_pred             EEEEEECCccCCCceeEecCCCCcE---EEecCCCCCCCCeEEEEEeCccccCCCHHHHHHHHHHHHHhcCCCCCceEEE
Confidence             45666664321        11111   11111  12333334444332222222111111111   12232 11221 2


Q ss_pred             EEEEE---c---cCCCCChhHHHH-HHHHHhhcCCCCeEEeccccC---CCCChhHHHHHHHHHHHhcC
Q 036521          281 LLKWS---T---GHPVPSVAASKA-SLELDHIQGKRGIWFCEAYQG---YGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       281 l~r~~---~---~~p~~~~~~~~~-~~~l~~lqg~~gl~~aG~~~g---~g~~E~av~SG~~aA~~ll~  339 (602)
                      .++|.   |   +.+.+.++.... ...+  .+..++|+|||+++.   .|++|+|+.||++||++|+.
T Consensus       417 ~~~W~~dp~~~g~y~~~~~g~~~~~~~~l--~~p~~~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~  483 (495)
T 2vvm_A          417 FHNWVKDEFAKGAWFFSRPGMVSECLQGL--REKHGGVVFANSDWALGWRSFIDGAIEEGTRAARVVLE  483 (495)
T ss_dssp             ECCTTTCTTTSSSSCCCCTTHHHHHHHHH--HCCBTTEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHH
T ss_pred             EeEcCCCCCCCCCccCcCCCcchhhHHHH--hCcCCCEEEechhhhcCCceEEEhHHHHHHHHHHHHHH
Confidence            34662   1   334455554422 2222  245689999999974   57899999999999999864

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.63  E-value=2.3e-15  Score=160.98  Aligned_cols=257  Identities=12%  Similarity=0.053  Sum_probs=158.4

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHH
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIA  142 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~  142 (602)
                      +++|+.+|+++++++.+..+.++.|++..+++.++.++   |+..++..+...  .. .+  .+..+.+|++.++++|++
T Consensus       126 ~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~-~~--g~~~~~gG~~~l~~~l~~  197 (421)
T 3nrn_A          126 EEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDL---TALELAKEIRAA--LR-WG--GPGLIRGGCKAVIDELER  197 (421)
T ss_dssp             CCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGS---BHHHHHHHHHHH--HH-HC--SCEEETTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccC---CHHHHHHHHHHH--hh-cC--CcceecCCHHHHHHHHHH
Confidence            45899999999878888888999999999999988775   332222222110  00 11  234678999999999999


Q ss_pred             HHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccC-CCCHHHHhhccCccccceeEE-Ee
Q 036521          143 LLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGN-QSTFEEKRLLGAFQYVYSDIF-LH  220 (602)
Q Consensus       143 ~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~-~~~~~~~~~l~~~~y~~~~~v-l~  220 (602)
                      .+.++|++|+++++|++|..++++| |. .+|+++.||+||+|+|+..+.+|++. ...+...+.+.++.|.++.++ +.
T Consensus       198 ~~~~~G~~i~~~~~V~~i~~~~~~v-V~-~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~  275 (421)
T 3nrn_A          198 IIMENKGKILTRKEVVEINIEEKKV-YT-RDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLA  275 (421)
T ss_dssp             HHHTTTCEEESSCCEEEEETTTTEE-EE-TTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEE
T ss_pred             HHHHCCCEEEcCCeEEEEEEECCEE-EE-eCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEEEE
Confidence            9999999999999999999988888 64 45668999999999999999999972 255566677888888765433 33


Q ss_pred             cCCCCCC-------CCCC----ccccccccc-CCCCCeEEEEeccccccCCCCC---CCCCeE---EEcCCCCCCcc-eE
Q 036521          221 RDKNFMP-------RNPA----AWSAWNFLG-GLDGKACLTYWLNVLQNIGDGE---TGLPFL---VTLNPDHTPNN-TL  281 (602)
Q Consensus       221 ~d~~l~p-------~~~~----~w~s~n~~~-~~~~~~~~t~~~~~~~~l~~~~---~~~~v~---~tl~p~~~p~~-~l  281 (602)
                      .+....+       .+..    .+.+..... .|++...+....-    ++...   ..+.+.   ..+.|  ..+. .+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~s~~~p~~ap~G~~~~~~~~~----~~~~~~~~~~~~~~~~L~~~~p--~~~~~~~  349 (421)
T 3nrn_A          276 VPGEPRIGNTIVFTPGLMINGFNEPSALDKSLAREGYTLIMAHMA----LKNGNVKKAIEKGWEELLEIFP--EGEPLLA  349 (421)
T ss_dssp             EESSCSSCSSEEECTTSSSCEEECGGGTCGGGSCTTEEEEEEEEE----CTTCCHHHHHHHHHHHHHHHCT--TCEEEEE
T ss_pred             EcCCcccCCeEEEcCCcceeeEeccCCCCCCcCCCCceEEEEEEe----eccccHHHHHHHHHHHHHHHcC--CCeEEEe
Confidence            3333111       1110    111111111 2334433333221    11100   001111   12334  2222 36


Q ss_pred             EEEEccCCCCChhHHHHHHHHHhhcCCCCeEEeccccC-CCC--ChhHHHHHHHHHHHhcCCc
Q 036521          282 LKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQG-YGF--HEDGLKAGMIAAHGVLGKR  341 (602)
Q Consensus       282 ~r~~~~~p~~~~~~~~~~~~l~~lqg~~gl~~aG~~~g-~g~--~E~av~SG~~aA~~ll~~~  341 (602)
                      .+|....|++......   .+. ... +|+|+||||+. ++.  +|+|+.||++||++| |..
T Consensus       350 ~~~~~~~p~~~~~~~~---~~~-~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l-~~~  406 (421)
T 3nrn_A          350 QVYRDGNPVNRTRAGL---HIE-WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL-NLG  406 (421)
T ss_dssp             EEC----------------CCC-CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT-TSC
T ss_pred             eeccCCCCcccccCCC---CCC-CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh-CcC
Confidence            6888888887433222   233 445 99999999984 433  599999999999999 644

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.61  E-value=1.7e-15  Score=152.09  Aligned_cols=106  Identities=25%  Similarity=0.374  Sum_probs=79.8

Q ss_pred             HHHHhhHhhhccchHHHHhhcCCCCcccccccCCCC--ccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHh
Q 036521          493 QARRNISYHYDLSNELFALFMDESMTYSCPIFKDED--EDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVR  570 (602)
Q Consensus       493 ~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~--~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~  570 (602)
                      .+.++|++|||..+++|+.++++.+  +++||....  .++.+++.++.+.+++.++++++.+|||||||+|.++..+++
T Consensus         4 p~~~~~~~~Yd~~~~~y~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~   81 (273)
T 3bus_A            4 PTPEEVRQMYDDFTDPFARIWGENL--HFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLAT   81 (273)
T ss_dssp             -------------------CCGGGC--CCCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHH
T ss_pred             CcHHHHHHHHcchHHHHHHHcCCCc--eEEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHH
Confidence            3567899999999999999999875  569997765  699999999999999999999999999999999999999998


Q ss_pred             ccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          571 QTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       571 ~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+++|+|+|+|++|++.|+++++..|+.+
T Consensus        82 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  111 (273)
T 3bus_A           82 ARDVRVTGISISRPQVNQANARATAAGLAN  111 (273)
T ss_dssp             HSCCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             hcCCEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence            778999999999999999999999888754

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.59  E-value=1.8e-14  Score=156.79  Aligned_cols=267  Identities=13%  Similarity=0.117  Sum_probs=174.4

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHh------hhH---HHHHH-HHHhcCcccc-CCCCcEEEec
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMS------FSA---FSILS-FYRNHHLLQL-FGRPQWLTVR  130 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~------~p~---~~~l~-~~~~~g~~~~-~~~~~~~~~~  130 (602)
                      .+++|+++|++++ +++++.+.++.|++.++|+++++++..      +|.   ..++. .+....-... .....++++.
T Consensus       134 ~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~  212 (484)
T 4dsg_A          134 EPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQR  212 (484)
T ss_dssp             SCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESS
T ss_pred             CCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecC
Confidence            4678999999996 899999999999999999999987621      221   11222 1111100000 0112355788


Q ss_pred             CCcHhHHHHHHHHHhcCCCeEEeC--CceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccC---CCCHHHHh
Q 036521          131 SRSHSYVNKVIALLESLGCQIKTG--CEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGN---QSTFEEKR  205 (602)
Q Consensus       131 gG~~~l~~~la~~l~~~g~~v~l~--t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~---~~~~~~~~  205 (602)
                      ||+++++++|++.+.+  .+|+++  ++|++|.+++++|++  .+|+++.||+||+|+|++.+.+++.+   ++.++..+
T Consensus       213 gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~~~~v~~--~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~  288 (484)
T 4dsg_A          213 GGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDADAKTITF--SNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPA  288 (484)
T ss_dssp             SCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETTTTEEEE--TTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHH
T ss_pred             CCHHHHHHHHHhhhhh--CeEEECCCceeEEEEecCCEEEE--CCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHH
Confidence            9999999999999942  289999  579999998887654  67778999999999999999999963   25667788


Q ss_pred             hccCccccceeEE-EecCCCC-----------CCCCCC-----ccccccccc-CCCCCeEEEEec--cccccCCCCCCCC
Q 036521          206 LLGAFQYVYSDIF-LHRDKNF-----------MPRNPA-----AWSAWNFLG-GLDGKACLTYWL--NVLQNIGDGETGL  265 (602)
Q Consensus       206 ~l~~~~y~~~~~v-l~~d~~l-----------~p~~~~-----~w~s~n~~~-~~~~~~~~t~~~--~~~~~l~~~~~~~  265 (602)
                      .+++++|.++.++ +.++...           +|....     .+.+..... .+++..++....  +....+++    +
T Consensus       289 ~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g~~~l~~e~~~~~~~~~~d----~  364 (484)
T 4dsg_A          289 IADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEGHWSLMLEVSESKYKPVNH----S  364 (484)
T ss_dssp             HHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTTEEEEEEEEEEBTTBCCCT----T
T ss_pred             HHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCCeEEEEEEEecCcCCcCCH----H
Confidence            8999999887544 3444331           122111     111110111 133433333322  22222222    2


Q ss_pred             CeEE-------EcCCCCCCcc----eEEEEEccCCCCChhHHHHHHHHHh-hcCCCCeEEeccc--cCC--CCChhHHHH
Q 036521          266 PFLV-------TLNPDHTPNN----TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCEAY--QGY--GFHEDGLKA  329 (602)
Q Consensus       266 ~v~~-------tl~p~~~p~~----~l~r~~~~~p~~~~~~~~~~~~l~~-lqg~~gl~~aG~~--~g~--g~~E~av~S  329 (602)
                      ++..       .+....+.++    .+.||.++.|+|+.++....+++.. ++.. ||+++|.+  +.+  +-+++|+.|
T Consensus       365 ~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~~-~l~~~Gr~g~~~y~v~~~d~~i~s  443 (484)
T 4dsg_A          365 TLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMSR-CIYSRGRFGAWRYEVGNQDHSFMQ  443 (484)
T ss_dssp             SHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHT-TEEECSTTTTCCGGGCSHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHhC-CcEeecCCcccccCCCChHHHHHH
Confidence            2221       1111111122    2669999999999999888877766 4555 99999995  223  338999999


Q ss_pred             HHHHHHHhc
Q 036521          330 GMIAAHGVL  338 (602)
Q Consensus       330 G~~aA~~ll  338 (602)
                      |++||+.|+
T Consensus       444 g~~aa~~i~  452 (484)
T 4dsg_A          444 GVEAIDHVL  452 (484)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999998

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.59  E-value=4.4e-16  Score=165.49  Aligned_cols=235  Identities=7%  Similarity=-0.038  Sum_probs=151.1

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHH-HHHHhcCccccCCCCcEE-EecCCcHhHHHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSIL-SFYRNHHLLQLFGRPQWL-TVRSRSHSYVNK  139 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l-~~~~~~g~~~~~~~~~~~-~~~gG~~~l~~~  139 (602)
                      .+++|+++|+.+ .+++++.+.++.|++.++|+++++++....+..+. .+...++.    ....+. .++||+++++++
T Consensus       136 ~~~~s~~e~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~----~~~~~~~~p~gG~~~l~~~  210 (399)
T 1v0j_A          136 ADAQNLEEKAIS-LIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRY----FSDTYEGLPTDGYTAWLQN  210 (399)
T ss_dssp             TC----CCHHHH-HHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCS----CCCSEEECBTTHHHHHHHH
T ss_pred             CCcccHHHHHHH-HHhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccch----hhhhhcccccccHHHHHHH
Confidence            367899999998 58999999999999999999999887432221000 00000110    122443 788999999999


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEE-ecCEEEEecChHHHHhhccCCCCHHHHhhccCccccce--e
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQG-FYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYS--D  216 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~-~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~--~  216 (602)
                      |++.+   |++|+++++|++|.+.   |     +  .+ .||+||+|+|++++.++           .++.++|.+.  .
T Consensus       211 l~~~~---g~~I~l~~~V~~I~~~---v-----~--~~~~aD~VI~t~p~~~l~~~-----------~l~~l~y~s~~~~  266 (399)
T 1v0j_A          211 MAADH---RIEVRLNTDWFDVRGQ---L-----R--PGSPAAPVVYTGPLDRYFDY-----------AEGRLGWRTLDFE  266 (399)
T ss_dssp             HTCST---TEEEECSCCHHHHHHH---H-----T--TTSTTCCEEECSCHHHHTTT-----------TTCCCCEEEEEEE
T ss_pred             HHhcC---CeEEEECCchhhhhhh---h-----h--hcccCCEEEECCcHHHHHhh-----------hhCCCCcceEEEE
Confidence            99866   7899999999999753   2     1  24 69999999999987765           3678999864  3


Q ss_pred             EEEecCCCCCCCCCCcccccccccCCCCCeEEEEeccccccCCCCCCCCCeEEEcCCCCCCcceEEEE----EccCCCCC
Q 036521          217 IFLHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKW----STGHPVPS  292 (602)
Q Consensus       217 ~vl~~d~~l~p~~~~~w~s~n~~~~~~~~~~~t~~~~~~~~l~~~~~~~~v~~tl~p~~~p~~~l~r~----~~~~p~~~  292 (602)
                      .+.+ |....   ...| .+|+..+......++++.+-......+ . +....+++.       ...|    .+.+|+++
T Consensus       267 ~~~~-~~~~~---~~~~-~~~~~~~~~~~~ri~~~~~~~~~~~~~-~-~~~~v~~e~-------~~~~~~~~~~~ypv~~  332 (399)
T 1v0j_A          267 VEVL-PIGDF---QGTA-VMNYNDLDVPYTRIHEFRHFHPERDYP-T-DKTVIMREY-------SRFAEDDDEPYYPINT  332 (399)
T ss_dssp             EEEE-SSSCS---SSSS-EEEECCTTSSCSEEEEGGGGCTTSCCC-S-SCEEEEEEE-------EEECCTTSCCCEECCC
T ss_pred             EEEE-ccccC---CCCe-EEEeCCCCCCcceeEeecCCCCCCcCC-C-CCeEEEEee-------cccccCCCccccccCc
Confidence            3334 54321   1121 244443222223455554432333110 1 233333321       1123    23477888


Q ss_pred             hhHHHHHHHHHhhcC-C---CCeEEeccc--cCCCCChhHHHHHHHHHHHhcC
Q 036521          293 VAASKASLELDHIQG-K---RGIWFCEAY--QGYGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       293 ~~~~~~~~~l~~lqg-~---~gl~~aG~~--~g~g~~E~av~SG~~aA~~ll~  339 (602)
                      ..+.+.++++..++. .   +++|+||+|  +.++.||||+.||+++|++|+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~e~~i~sa~~~a~~l~~  385 (399)
T 1v0j_A          333 EADRALLATYRARAKSETASSKVLFGGRLGTYQYLDMHMAIASALNMYDNVLA  385 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCEEECHHHHHTCCCCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCEEEccceEEEEecCHHHHHHHHHHHHHHHhh
Confidence            888888888887764 5   899999997  5667799999999999999853

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.58  E-value=2.4e-15  Score=162.23  Aligned_cols=267  Identities=10%  Similarity=0.025  Sum_probs=165.6

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChh-hHHhhhHHHHHHHHHhcCccc-c--CCCCcEEEecCCcHhHHH
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSE-GIMSFSAFSILSFYRNHHLLQ-L--FGRPQWLTVRSRSHSYVN  138 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~-~~~~~p~~~~l~~~~~~g~~~-~--~~~~~~~~~~gG~~~l~~  138 (602)
                      +++|+.+|++++..++.+ ..++.+++.++|+.+++ ++   ++.+++.++...|-.. .  ..+..++.+.||++++++
T Consensus       144 ~~~s~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~  219 (453)
T 2yg5_A          144 DTVSFKQWLINQSDDAEA-RDNIGLFIAGGMLTKPAHSF---SALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSI  219 (453)
T ss_dssp             HSSBHHHHHHHHCSCHHH-HHHHHHHHCCCCCCSCTTSS---BHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHH
T ss_pred             hhccHHHHHHhhcCCHHH-HHHHHHHHHhhcccCCcccc---cHHHHHHHhccCCcHhhhccCCCcceEEEcCChHHHHH
Confidence            478999999998776664 45888999888888876 54   5666666665543110 0  012346789999999999


Q ss_pred             HHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecChHHHHhhccC-CCCHHHHhhccCcccccee
Q 036521          139 KVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHAPDALRILGN-QSTFEEKRLLGAFQYVYSD  216 (602)
Q Consensus       139 ~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~-~~~~~~~~~l~~~~y~~~~  216 (602)
                      +|++.+   |++|+++++|++|..++++ |.|++ +|+++.||+||+|+|+..+.+++.. ++.+...+.+++++|.++.
T Consensus       220 ~l~~~l---g~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l~~~p~lp~~~~~~i~~~~~~~~~  295 (453)
T 2yg5_A          220 RMAEAL---GDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSRISYDPPLPRRQHQMHQHQSLGLVI  295 (453)
T ss_dssp             HHHHHH---GGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGGSEEESCCCHHHHHHGGGEEECCEE
T ss_pred             HHHHhc---CCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhcCEeCCCCCHHHHHHHhcCCCcceE
Confidence            999999   7899999999999998888 88877 5668899999999999998888742 2556667788889887654


Q ss_pred             -EEEecCCCCCCCCC--------Cccccccccc-CCCC-CeEEEEeccc-----cccCCCCCCCCCeEEE---cCCCC--
Q 036521          217 -IFLHRDKNFMPRNP--------AAWSAWNFLG-GLDG-KACLTYWLNV-----LQNIGDGETGLPFLVT---LNPDH--  275 (602)
Q Consensus       217 -~vl~~d~~l~p~~~--------~~w~s~n~~~-~~~~-~~~~t~~~~~-----~~~l~~~~~~~~v~~t---l~p~~--  275 (602)
                       +.+.++..+++...        ..+..+.+.. .+++ ...++.+...     +..+++++..+.+...   +.+..  
T Consensus       296 kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~  375 (453)
T 2yg5_A          296 KVHAVYETPFWREDGLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAE  375 (453)
T ss_dssp             EEEEEESSCGGGGGTEEEEEECTTSSSCEEEECCCTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGG
T ss_pred             EEEEEECCCCCCCCCCCceeecCCCCeEEEEeCCCCCCCCCEEEEEeccHHHHHHhcCCHHHHHHHHHHHHHHHhCccCC
Confidence             34556655432210        0011111111 1222 2344443321     1112221111111111   11111  


Q ss_pred             CCcc-eEEEEE---cc----CCCCChhHHHHHHHHHh-hcCCCCeEEecccc---CCCCChhHHHHHHHHHHHhcC
Q 036521          276 TPNN-TLLKWS---TG----HPVPSVAASKASLELDH-IQGKRGIWFCEAYQ---GYGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       276 ~p~~-~l~r~~---~~----~p~~~~~~~~~~~~l~~-lqg~~gl~~aG~~~---g~g~~E~av~SG~~aA~~ll~  339 (602)
                      .|.. ..++|.   +.    .|.+.++......  .. .++.++|||||+++   ..|.+|+|+.||.++|++|+.
T Consensus       376 ~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~--~~~~~p~~~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~  449 (453)
T 2yg5_A          376 EPVVYYESDWGSEEWTRGCYAASFDLGGLHRYG--ADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIA  449 (453)
T ss_dssp             CCSEEEECCTTTCTTTCSSSCEEECTTHHHHHG--GGTTCCBTTEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHH
T ss_pred             CccEEEEeecCCCCCCCCCCcCcCCCCccccch--HHHhCCcCceEEeecccccccccchHHHHHHHHHHHHHHHH
Confidence            1221 234553   11    1334444332211  12 23568999999987   456799999999999999854

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.56  E-value=1.8e-13  Score=149.89  Aligned_cols=271  Identities=11%  Similarity=0.122  Sum_probs=168.5

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhh------h---HHHHHH-HHHhcCccc-cCCCCcEEEecC
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSF------S---AFSILS-FYRNHHLLQ-LFGRPQWLTVRS  131 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~------p---~~~~l~-~~~~~g~~~-~~~~~~~~~~~g  131 (602)
                      +..|+.+|+.+ .+++.+.+.++.|++..+|+.+++++...      +   ...... .+....... ......+++++|
T Consensus       141 ~~~s~~~~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  219 (513)
T 4gde_A          141 KPKTFDEWIVR-MMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARG  219 (513)
T ss_dssp             CCCSHHHHHHH-HHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSS
T ss_pred             cccCHHHHHHH-hhhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccC
Confidence            56899999988 48999999999999999999998765211      1   111111 111110000 012234677899


Q ss_pred             CcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCcc
Q 036521          132 RSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQ  211 (602)
Q Consensus       132 G~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~  211 (602)
                      |+++++++|++.|++.|++|+++++|++|..+++.+  ++.+|+++.||+||+|+|.+.+.+++.+   +........++
T Consensus       220 G~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v--~~~~G~~~~ad~vI~t~P~~~l~~~l~~---~~~~~~~~~l~  294 (513)
T 4gde_A          220 GTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTV--TLQDGTTIGYKKLVSTMAVDFLAEAMND---QELVGLTKQLF  294 (513)
T ss_dssp             HHHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTEE--EETTSCEEEEEEEEECSCHHHHHHHTTC---HHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHhcCeeeecceEEEEEEccCCEE--EEcCCCEEECCEEEECCCHHHHHHhcCc---hhhHhhhhccc
Confidence            999999999999988899999999999999876654  4678888999999999999999999984   34566678889


Q ss_pred             ccceeEEE-ecCCC----C-------CCCCC---------CcccccccccCCC-------------------CCeEEEEe
Q 036521          212 YVYSDIFL-HRDKN----F-------MPRNP---------AAWSAWNFLGGLD-------------------GKACLTYW  251 (602)
Q Consensus       212 y~~~~~vl-~~d~~----l-------~p~~~---------~~w~s~n~~~~~~-------------------~~~~~t~~  251 (602)
                      |.+..++. ..+..    +       .|...         ..|+..+.+....                   ....+.+.
T Consensus       295 y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~f~Ri~~~~n~sp~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (513)
T 4gde_A          295 YSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCPFYRATIFSNYSPYNQPEASAALPTMQLADGSRPQSTEAKEGPYWSIM  374 (513)
T ss_dssp             EEEEEEEEEEEESSCCTTTTTCCEEECCSTTCSCSEEECGGGTCGGGSCCTTCCEECCEETTSCCCSCCSEECCCEEEEE
T ss_pred             CCceEEEEEEEeccccccccccceeeccCCCCceeEEEecCCCCcccCCCCCceEEEEEeccCCCcccccCCcceEEEEE
Confidence            98765443 22211    1       11110         0111111110000                   00011111


Q ss_pred             c----cccccCCCCCCCCCeEE---EcCCCCC-Ccc---eEEEEEccCCCCChhHHHHHHHHHh-hcCCCCeEEeccc--
Q 036521          252 L----NVLQNIGDGETGLPFLV---TLNPDHT-PNN---TLLKWSTGHPVPSVAASKASLELDH-IQGKRGIWFCEAY--  317 (602)
Q Consensus       252 ~----~~~~~l~~~~~~~~v~~---tl~p~~~-p~~---~l~r~~~~~p~~~~~~~~~~~~l~~-lqg~~gl~~aG~~--  317 (602)
                      .    ..+..+++++..+.+..   .+..... ++.   .+.||.++.|+|+.++.+..+++.. ++. +||++||-+  
T Consensus       375 ~~~~~~~~~~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~~-~~l~~~GR~g~  453 (513)
T 4gde_A          375 LEVSESSMKPVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQD-KDIWSRGRFGS  453 (513)
T ss_dssp             EEEEEBTTBCCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH-TTEEECSTTTT
T ss_pred             ecccchhccCCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHhh-cCcEEecCCcc
Confidence            1    01112222111000000   1111111 221   3569999999999999888777765 444 699999953  


Q ss_pred             -cC-CCCChhHHHHHHHHHHHhcCC
Q 036521          318 -QG-YGFHEDGLKAGMIAAHGVLGK  340 (602)
Q Consensus       318 -~g-~g~~E~av~SG~~aA~~ll~~  340 (602)
                       -. ++-++.|+.||+.||+.|+..
T Consensus       454 ~~Y~~~n~D~a~~~g~~aa~~I~~g  478 (513)
T 4gde_A          454 WRYEVGNQDHSFMLGVEAVDNIVNG  478 (513)
T ss_dssp             CCGGGCSHHHHHHHHHHHHHHHHHC
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHHcC
Confidence             21 245899999999999999754

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.52  E-value=4.3e-14  Score=143.71  Aligned_cols=110  Identities=20%  Similarity=0.326  Sum_probs=96.0

Q ss_pred             CchHHHHHhhHhhhccc--hHHHHhhc-CCCCcccccccCCC--CccHHHHHHHHHHHHHHHc----cCCCCCeEEEEec
Q 036521          489 NSLAQARRNISYHYDLS--NELFALFM-DESMTYSCPIFKDE--DEDLKVAQMRKHSLQIEKA----RVSKGHGVLEIGC  559 (602)
Q Consensus       489 ~~~~~~~~~i~~~Yd~~--~~~y~~~~-~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l----~l~~g~~vLDiGc  559 (602)
                      ++...+++++.+|||..  ++||+..+ ++.++  +++|...  ...+.+++.+..+.+++.+    .++++.+||||||
T Consensus        14 ~~~~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGc   91 (297)
T 2o57_A           14 ATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIH--VGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGA   91 (297)
T ss_dssp             --CHHHHHHHHHTHHHHHHHHHHHHHHTTSCCC--SCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETC
T ss_pred             hhHHHHHHHHHHHcCCccchhHHHHHhCCCceE--EEecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCC
Confidence            44567788999999997  49997655 56654  5899887  8899999999999999999    8899999999999


Q ss_pred             CchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          560 GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       560 G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      |+|.++..++++.+++|+|+|+|++|++.|+++++..|+.+
T Consensus        92 G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  132 (297)
T 2o57_A           92 GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLAD  132 (297)
T ss_dssp             TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTT
T ss_pred             CCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence            99999999999778999999999999999999999888753

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.36  E-value=3.5e-13  Score=138.13  Aligned_cols=108  Identities=20%  Similarity=0.301  Sum_probs=92.5

Q ss_pred             CchHHHHHhh-HhhhccchHHHHhhcCCC-CcccccccCCCCccHHHHHHHHHHHHHHHcc-CCCCCeEEEEecCchHHH
Q 036521          489 NSLAQARRNI-SYHYDLSNELFALFMDES-MTYSCPIFKDEDEDLKVAQMRKHSLQIEKAR-VSKGHGVLEIGCGWGTFA  565 (602)
Q Consensus       489 ~~~~~~~~~i-~~~Yd~~~~~y~~~~~~~-~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~-l~~g~~vLDiGcG~G~~~  565 (602)
                      |...+++++| ..|||.+++++..+.++. +.|++++|.. ...+++++.   +.+++.+. ++++.+|||||||+|.++
T Consensus        57 ~~~~g~~~~i~~~~y~~~~~~~~~~~~~~~~~y~~~~f~~-~~~~~~~~~---~~l~~~l~~~~~~~~vLDiGcG~G~~~  132 (312)
T 3vc1_A           57 NLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAE-LHRLESAQA---EFLMDHLGQAGPDDTLVDAGCGRGGSM  132 (312)
T ss_dssp             HHHHHTTTTCCCCSCCCSCCCHHHHCCTTSTTHHHHHHHH-HHHHHHHHH---HHHHTTSCCCCTTCEEEEESCTTSHHH
T ss_pred             hhhcccccchhhhhcCCchhHHHhhcCCCccccchHHHhh-hhhHHHHHH---HHHHHHhccCCCCCEEEEecCCCCHHH
Confidence            4556677788 899999999999999888 9999999974 334554444   56888887 889999999999999999


Q ss_pred             HHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          566 IEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       566 ~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..++++.+++|+|+|+|++|++.|+++++..|+.+
T Consensus       133 ~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  167 (312)
T 3vc1_A          133 VMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDD  167 (312)
T ss_dssp             HHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Confidence            99999768999999999999999999999988764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.36  E-value=1.1e-12  Score=140.36  Aligned_cols=151  Identities=14%  Similarity=0.125  Sum_probs=111.9

Q ss_pred             CCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCc-c-c-cCCCCcEEEecCCcHhHHHHHH
Q 036521           65 ETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHL-L-Q-LFGRPQWLTVRSRSHSYVNKVI  141 (602)
Q Consensus        65 ~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~-~-~-~~~~~~~~~~~gG~~~l~~~la  141 (602)
                      +|+.+|+++.+.++... .++.+++..+++.++.++   ++..++.++...+. + . ... ... .+.+|++.++++++
T Consensus       141 ~s~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~l~~~~~  214 (431)
T 3k7m_X          141 IPLNEYVDKLDLPPVSR-QFLLAWAWNMLGQPADQA---SALWMLQLVAAHHYSILGVVLS-LDE-VFSNGSADLVDAMS  214 (431)
T ss_dssp             SBHHHHHHHHTCCHHHH-HHHHHHHHHHHSSCTTTS---BHHHHHHHHHHTTSCHHHHHHT-CCE-EETTCTHHHHHHHH
T ss_pred             CCHHHHHHhcCCCHHHH-HHHHHHHHHhcCCChhhh---hHHHHHHHHHhcCCccceeecc-hhh-hcCCcHHHHHHHHH
Confidence            89999999988777654 467788888888876654   55566666554321 0 0 111 223 78999999999998


Q ss_pred             HHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhcc-CCCCHHHHhhccCccccce-eEEE
Q 036521          142 ALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILG-NQSTFEEKRLLGAFQYVYS-DIFL  219 (602)
Q Consensus       142 ~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~-~~~~~~~~~~l~~~~y~~~-~~vl  219 (602)
                      +.+   | +|+++++|++|++++++|.|++.+|+++.||+||+|+|++.+.++.. +++++...+.+....|... .+.+
T Consensus       215 ~~~---g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~  290 (431)
T 3k7m_X          215 QEI---P-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILI  290 (431)
T ss_dssp             TTC---S-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEE
T ss_pred             hhC---C-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEE
Confidence            776   7 99999999999998889999998887799999999999999888853 3355556666777766554 3445


Q ss_pred             ecCCCC
Q 036521          220 HRDKNF  225 (602)
Q Consensus       220 ~~d~~l  225 (602)
                      .+++.+
T Consensus       291 ~~~~~~  296 (431)
T 3k7m_X          291 HVRGAE  296 (431)
T ss_dssp             EEESCC
T ss_pred             EECCCC
Confidence            666553

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.34  E-value=1.4e-13  Score=150.06  Aligned_cols=122  Identities=14%  Similarity=-0.007  Sum_probs=92.5

Q ss_pred             hHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC---c
Q 036521           99 GIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG---F  175 (602)
Q Consensus        99 ~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g---~  175 (602)
                      ++..++...++.++..+  ........++.++||+++|+++|++.|.+  ++|+++++|++|.+++++|.|++.+|   +
T Consensus       206 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~  281 (489)
T 2jae_A          206 AMQEVIRSGIGRNFSFD--FGYDQAMMMFTPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKK  281 (489)
T ss_dssp             CHHHHHHHTTTTTGGGG--GCTTTSSSEEEETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEE
T ss_pred             CHHHHhhhhHHHHHhhh--hccccCccEEeecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEE
Confidence            44444444444443322  11233467899999999999999999931  78999999999999999999887765   5


Q ss_pred             EEecCEEEEecChHHHHhhccCCCCHHHHhhccCccccceeEE-EecCCCC
Q 036521          176 QGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIF-LHRDKNF  225 (602)
Q Consensus       176 ~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~~v-l~~d~~l  225 (602)
                      ++.||+||+|+|+..+.+++. ++++...+.+++++|.+...+ +.++..+
T Consensus       282 ~~~ad~vI~a~p~~~l~~l~~-~l~~~~~~~l~~~~~~~~~kv~l~~~~~~  331 (489)
T 2jae_A          282 SITADYAICTIPPHLVGRLQN-NLPGDVLTALKAAKPSSSGKLGIEYSRRW  331 (489)
T ss_dssp             EEEESEEEECSCHHHHTTSEE-CCCHHHHHHHHTEECCCEEEEEEEESSCH
T ss_pred             EEECCEEEECCCHHHHHhCcc-CCCHHHHHHHHhCCCccceEEEEEeCCCC
Confidence            789999999999999988887 478888899999999876543 4555543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.31  E-value=6.5e-12  Score=136.25  Aligned_cols=100  Identities=14%  Similarity=0.019  Sum_probs=81.2

Q ss_pred             ecCCcHhHHHHHHHHHhcC--------CCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhc---cC
Q 036521          129 VRSRSHSYVNKVIALLESL--------GCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRIL---GN  197 (602)
Q Consensus       129 ~~gG~~~l~~~la~~l~~~--------g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll---~~  197 (602)
                      +.||+++++++|++.+.+.        +.+|+++++|++|..++++|.|++.+|+++.||+||+|+|+..+.+++   .+
T Consensus       201 ~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p  280 (472)
T 1b37_A          201 DQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKP  280 (472)
T ss_dssp             CTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEES
T ss_pred             cCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHHhccCCeeECC
Confidence            4799999999999998654        568999999999999989999999999889999999999999998864   22


Q ss_pred             CCCHHHHhhccCccccce-eEEEecCCCCCCC
Q 036521          198 QSTFEEKRLLGAFQYVYS-DIFLHRDKNFMPR  228 (602)
Q Consensus       198 ~~~~~~~~~l~~~~y~~~-~~vl~~d~~l~p~  228 (602)
                      ++.+...+.+.+++|.+. .+.+.++..+++.
T Consensus       281 ~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~  312 (472)
T 1b37_A          281 KLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPE  312 (472)
T ss_dssp             CCCHHHHHHHHHSEEECEEEEEEECSSCCSCC
T ss_pred             CCCHHHHHHHHhcCCcceeEEEEECCCcCCCC
Confidence            355666777888888765 3456777666543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.30  E-value=1e-11  Score=135.55  Aligned_cols=101  Identities=14%  Similarity=0.062  Sum_probs=81.7

Q ss_pred             CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc----EEecCEEEEecChHHHHhhcc-C
Q 036521          123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF----QGFYDGCIMAVHAPDALRILG-N  197 (602)
Q Consensus       123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~----~~~ad~VI~A~p~~~a~~ll~-~  197 (602)
                      ..+++.+.||+++++++|++.+.   .+|+++++|++|..++++|.|++.+|+    ++.||+||+|+|+..+.++.. +
T Consensus       230 ~~~~~~~~gG~~~l~~~l~~~l~---~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p  306 (498)
T 2iid_A          230 EKRFDEIVDGMDKLPTAMYRDIQ---DKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNP  306 (498)
T ss_dssp             CCCEEEETTCTTHHHHHHHHHTG---GGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEES
T ss_pred             CcceEEeCCcHHHHHHHHHHhcc---cccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhheecCC
Confidence            35678999999999999999994   489999999999999889988876654    479999999999998888753 3


Q ss_pred             CCCHHHHhhccCcccccee-EEEecCCCCC
Q 036521          198 QSTFEEKRLLGAFQYVYSD-IFLHRDKNFM  226 (602)
Q Consensus       198 ~~~~~~~~~l~~~~y~~~~-~vl~~d~~l~  226 (602)
                      ++++...+.+.+++|.+.. +++.++..++
T Consensus       307 ~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w  336 (498)
T 2iid_A          307 PLLPKKAHALRSVHYRSGTKIFLTCTTKFW  336 (498)
T ss_dssp             CCCHHHHHHHHHCCEECEEEEEEEESSCGG
T ss_pred             CCCHHHHHHHHhCCCcceeEEEEEeCCCCc
Confidence            3666777888999987764 4456666554

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.18  E-value=1.1e-10  Score=127.23  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=60.5

Q ss_pred             EEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecChHHHHh-hccCC-CCHH
Q 036521          126 WLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHAPDALR-ILGNQ-STFE  202 (602)
Q Consensus       126 ~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~~~a~~-ll~~~-~~~~  202 (602)
                      .+.++||+++++++|++.++++|++|+++++|++|..++++++ |++.+|+++.||.||+++++..+.+ |++.. ....
T Consensus       213 ~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~~  292 (501)
T 4dgk_A          213 VWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVK  292 (501)
T ss_dssp             EEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC-----------------
T ss_pred             eEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccchh
Confidence            3467999999999999999999999999999999999988875 7888999999999999998777654 55431 2233


Q ss_pred             HHhhccCccccceeEEE
Q 036521          203 EKRLLGAFQYVYSDIFL  219 (602)
Q Consensus       203 ~~~~l~~~~y~~~~~vl  219 (602)
                      ..+.+.+.++.....++
T Consensus       293 ~~~~~~~~~~~~s~~~~  309 (501)
T 4dgk_A          293 QSNKLQTKRMSNSLFVL  309 (501)
T ss_dssp             ----------CCEEEEE
T ss_pred             hhhhhhccccCCceeEE
Confidence            45556666666554443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.17  E-value=3.1e-11  Score=120.89  Aligned_cols=115  Identities=12%  Similarity=0.087  Sum_probs=82.8

Q ss_pred             hhhccCchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCC-CCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCch
Q 036521          484 HISRRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKD-EDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWG  562 (602)
Q Consensus       484 ~~~~~~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~-~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G  562 (602)
                      +..+..+.....+.+.++|+...++|+..+...+..+..-+.. ..-...+...+..+.-...+++++|++|||||||+|
T Consensus        55 ~vl~~~~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G  134 (298)
T 3fpf_A           55 HILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPL  134 (298)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSS
T ss_pred             HHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCcc
Confidence            3444456777889999999999999999887765333211100 000111122333334445788999999999999998


Q ss_pred             HHH-HHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          563 TFA-IEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       563 ~~~-~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +++ +.+|+..|++|+|||+|++|++.|++++++.|+
T Consensus       135 ~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl  171 (298)
T 3fpf_A          135 PLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV  171 (298)
T ss_dssp             CHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC
Confidence            765 556665799999999999999999999999887

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.11  E-value=6.4e-11  Score=133.69  Aligned_cols=100  Identities=15%  Similarity=0.033  Sum_probs=81.1

Q ss_pred             CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC------CcEEecCEEEEecChHHHHhh---
Q 036521          124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD------GFQGFYDGCIMAVHAPDALRI---  194 (602)
Q Consensus       124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~------g~~~~ad~VI~A~p~~~a~~l---  194 (602)
                      +.++++.||+++|+++|++.+     +|++|++|++|..++++|+|++.+      |+++.||+||+|+|+..+.++   
T Consensus       391 g~~~~~~gG~~~l~~~La~~l-----~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~  465 (662)
T 2z3y_A          391 GSHLTVRNGYSCVPVALAEGL-----DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA  465 (662)
T ss_dssp             SCCEEETTCTTHHHHHHTTTC-----EEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCS
T ss_pred             CceeeecCcHHHHHHHHHhcC-----ceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCc
Confidence            457899999999999998765     899999999999999999988654      457899999999999999873   


Q ss_pred             --ccCCCCHHHHhhccCccccce-eEEEecCCCCCCC
Q 036521          195 --LGNQSTFEEKRLLGAFQYVYS-DIFLHRDKNFMPR  228 (602)
Q Consensus       195 --l~~~~~~~~~~~l~~~~y~~~-~~vl~~d~~l~p~  228 (602)
                        +.+++++...+.+.+++|.+. .+++.++..+++.
T Consensus       466 i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~  502 (662)
T 2z3y_A          466 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDP  502 (662)
T ss_dssp             SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCT
T ss_pred             eEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccccC
Confidence              333356666778899998765 4567788777654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.07  E-value=5.5e-11  Score=122.06  Aligned_cols=91  Identities=22%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             HhhcCCCCcccccccCCCCccHHHH---HH----HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEc
Q 036521          510 ALFMDESMTYSCPIFKDEDEDLKVA---QM----RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGIT  580 (602)
Q Consensus       510 ~~~~~~~~~ys~~~~~~~~~~l~~a---q~----~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid  580 (602)
                      +.|+++.+.|+++|++....+++.+   |.    .+.+.+++.+.+++|++|||||||+|.++..+++..  +++|+|+|
T Consensus        28 ~~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD  107 (317)
T 1dl5_A           28 EEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVE  107 (317)
T ss_dssp             GGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEE
Confidence            3578889999999987654244444   33    677789999999999999999999999999999872  35699999


Q ss_pred             CCHHHHHHHHHHHHHcCCCC
Q 036521          581 LSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       581 ~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|++|++.|+++++..|+++
T Consensus       108 ~s~~~~~~a~~~~~~~g~~~  127 (317)
T 1dl5_A          108 YSRKICEIAKRNVERLGIEN  127 (317)
T ss_dssp             SCHHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999888753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.02  E-value=2.2e-10  Score=131.55  Aligned_cols=100  Identities=15%  Similarity=0.033  Sum_probs=80.6

Q ss_pred             CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC------CcEEecCEEEEecChHHHHhh---
Q 036521          124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD------GFQGFYDGCIMAVHAPDALRI---  194 (602)
Q Consensus       124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~------g~~~~ad~VI~A~p~~~a~~l---  194 (602)
                      +.++++.||+++|+++|++.+     +|++|++|++|..++++|.|++.+      |+++.||+||+|+|+..+.++   
T Consensus       562 g~~~~~~gG~~~L~~aLa~~l-----~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~  636 (852)
T 2xag_A          562 GSHLTVRNGYSCVPVALAEGL-----DIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPA  636 (852)
T ss_dssp             SCCEEETTCTTHHHHHHTTTC-----CEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCS
T ss_pred             CceEEecCcHHHHHHHHHhCC-----CEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcc
Confidence            457899999999999998766     799999999999999999888644      457899999999999999874   


Q ss_pred             --ccCCCCHHHHhhccCccccce-eEEEecCCCCCCC
Q 036521          195 --LGNQSTFEEKRLLGAFQYVYS-DIFLHRDKNFMPR  228 (602)
Q Consensus       195 --l~~~~~~~~~~~l~~~~y~~~-~~vl~~d~~l~p~  228 (602)
                        +.+++.+...+.+.+++|..+ .+++.++..+++.
T Consensus       637 I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~  673 (852)
T 2xag_A          637 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDP  673 (852)
T ss_dssp             SEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCT
T ss_pred             cccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCC
Confidence              233355566777889998765 4567788777654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.98  E-value=1.3e-09  Score=119.58  Aligned_cols=98  Identities=14%  Similarity=0.071  Sum_probs=78.5

Q ss_pred             ecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEec-CCeEEEEeCCCcEEecCEEEEecChHHHHh-----------h-c
Q 036521          129 VRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQY-DEGRTEVRGDGFQGFYDGCIMAVHAPDALR-----------I-L  195 (602)
Q Consensus       129 ~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~-~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~-----------l-l  195 (602)
                      ..+ +++++++|++.++  +++|+++++|++|..+ +++|.|++.+|+++.||+||+|+|+..+..           + +
T Consensus       198 ~~g-~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f  274 (516)
T 1rsg_A          198 ALN-YDSVVQRIAQSFP--QNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEF  274 (516)
T ss_dssp             ESC-HHHHHHHHHTTSC--GGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEE
T ss_pred             hhC-HHHHHHHHHHhCC--CCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEe
Confidence            456 9999999999884  3579999999999986 667999998898899999999999998863           2 2


Q ss_pred             cCCCCHHHHhhccCccccce-eEEEecCCCCCCCC
Q 036521          196 GNQSTFEEKRLLGAFQYVYS-DIFLHRDKNFMPRN  229 (602)
Q Consensus       196 ~~~~~~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~  229 (602)
                      .+++++...+.+.+++|.+. .+++.++..+++..
T Consensus       275 ~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~  309 (516)
T 1rsg_A          275 QPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNE  309 (516)
T ss_dssp             ESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCS
T ss_pred             cCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCCCC
Confidence            22367777889999999775 45677888776543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.97  E-value=5.2e-10  Score=111.95  Aligned_cols=72  Identities=26%  Similarity=0.358  Sum_probs=65.9

Q ss_pred             CccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHH------HHHHHHHHHHHcCCC
Q 036521          528 DEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAE------QLKYAEMKVNEAGLQ  599 (602)
Q Consensus       528 ~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~------~l~~a~~~~~~~gl~  599 (602)
                      ..+++.+|.++...+++.++++++++|||||||+|.++..++++.|  ++|+|+|+|++      |++.|+++++..++.
T Consensus        21 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~  100 (275)
T 3bkx_A           21 ARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG  100 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG
T ss_pred             chHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC
Confidence            4688999999999999999999999999999999999999999744  89999999998      999999999887763

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.96  E-value=6.2e-10  Score=127.00  Aligned_cols=99  Identities=11%  Similarity=0.025  Sum_probs=80.6

Q ss_pred             CcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHh--h-ccCCCC
Q 036521          124 PQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALR--I-LGNQST  200 (602)
Q Consensus       124 ~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~--l-l~~~~~  200 (602)
                      +....+.+|++.+++++++.+     +|+++++|++|+.++++|.|++.+|+++.||+||+|+|+..+.+  + +.+++.
T Consensus       524 G~~~~~~~G~~~l~~aLa~gl-----~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp  598 (776)
T 4gut_A          524 GDHTLLTPGYSVIIEKLAEGL-----DIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLS  598 (776)
T ss_dssp             SCEEECTTCTHHHHHHHHTTS-----CEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCC
T ss_pred             CCeEEECChHHHHHHHHHhCC-----cEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCC
Confidence            456788999999999998655     89999999999999999999998888899999999999999865  2 233366


Q ss_pred             HHHHhhccCccccce-eEEEecCCCCCC
Q 036521          201 FEEKRLLGAFQYVYS-DIFLHRDKNFMP  227 (602)
Q Consensus       201 ~~~~~~l~~~~y~~~-~~vl~~d~~l~p  227 (602)
                      +...+.+.+++|... .+++.++..+++
T Consensus       599 ~~~~~ai~~l~~g~~~KV~l~f~~~FW~  626 (776)
T 4gut_A          599 EKKMKAINSLGAGIIEKIALQFPYRFWD  626 (776)
T ss_dssp             HHHHHHHHHEEEECCEEEEEECSSCTTH
T ss_pred             HHHHHHHHhCCCeeEEEEEEecCccccc
Confidence            677788888888765 466778776653

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.93  E-value=2.2e-09  Score=106.83  Aligned_cols=62  Identities=19%  Similarity=0.370  Sum_probs=52.1

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+..++++. +++|.+|||||||+|.+++.++++   .|++|+|||+|++|++.|+++++..++..
T Consensus        59 ~i~~l~~~~-~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~  123 (261)
T 4gek_A           59 MIGMLAERF-VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPT  123 (261)
T ss_dssp             HHHHHHHHH-CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSS
T ss_pred             HHHHHHHHh-CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCc
Confidence            333444443 789999999999999999999986   47899999999999999999999887653

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.88  E-value=2.9e-09  Score=102.99  Aligned_cols=51  Identities=22%  Similarity=0.365  Sum_probs=46.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++.+|||||||+|.++..+|++ .+++|+|||+|++|++.|+++++..|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n   85 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN   85 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc
Confidence            5779999999999999999987 46899999999999999999999988753

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.87  E-value=6.5e-10  Score=108.82  Aligned_cols=100  Identities=13%  Similarity=0.003  Sum_probs=66.3

Q ss_pred             hhHhhhccchHHHHhhcCCCCcccc--c-ccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC
Q 036521          497 NISYHYDLSNELFALFMDESMTYSC--P-IFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG  573 (602)
Q Consensus       497 ~i~~~Yd~~~~~y~~~~~~~~~ys~--~-~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g  573 (602)
                      ..+.+|+.++++...|.+..+.|+.  . +.......+..-....++.+.+.+ .+++.+|||||||+|.++..+++...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~   83 (236)
T 1zx0_A            5 SATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPI   83 (236)
T ss_dssp             ---CCSCTTCBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCE
T ss_pred             CCCCccCCcCCCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCC
Confidence            3455778888888888877777752  1 111111111111122333344433 56888999999999999999988534


Q ss_pred             CEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          574 CNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       574 ~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      .+|+|||+|++|++.|+++++..+
T Consensus        84 ~~v~gvD~s~~~l~~a~~~~~~~~  107 (236)
T 1zx0_A           84 DEHWIIECNDGVFQRLRDWAPRQT  107 (236)
T ss_dssp             EEEEEEECCHHHHHHHHHHGGGCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhcC
Confidence            499999999999999999887655

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.87  E-value=4.8e-09  Score=103.62  Aligned_cols=64  Identities=25%  Similarity=0.324  Sum_probs=58.0

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..++.+++.+.++++.+|||||||+|.++..++++.+++|+|+|+|++|++.|+++++..|+.+
T Consensus        23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~   86 (256)
T 1nkv_A           23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSE   86 (256)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence            4556788888999999999999999999999998778899999999999999999999988753

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.86  E-value=5.8e-09  Score=99.75  Aligned_cols=59  Identities=20%  Similarity=0.348  Sum_probs=55.0

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+++.+.++++++|||||||+|.+++.+|++ +++|+|||+|+++++.|+++++..|+.
T Consensus        45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~  103 (204)
T 3njr_A           45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLS  103 (204)
T ss_dssp             HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            45778889999999999999999999999997 999999999999999999999998876

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.84  E-value=2.8e-09  Score=105.53  Aligned_cols=57  Identities=14%  Similarity=0.114  Sum_probs=51.8

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      .+.+++.++++++.+|||||||+|.+++.+|++ |++|+|||+|++|++.|+++++..
T Consensus        34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc
Confidence            356788889999999999999999999999996 899999999999999999987543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.84  E-value=3.4e-09  Score=101.29  Aligned_cols=53  Identities=21%  Similarity=0.113  Sum_probs=48.0

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+++.+.++++.+|||+|||+|..+..+|++ |++|+|||+|++|++.|+++..
T Consensus        13 ~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~   65 (203)
T 1pjz_A           13 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERG   65 (203)
T ss_dssp             HHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHC
T ss_pred             HHHHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHcc
Confidence            4566777888999999999999999999996 9999999999999999998864

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.83  E-value=6.5e-09  Score=97.40  Aligned_cols=52  Identities=10%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             ccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          546 ARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..+++|++|||||||+|.++..++++ +++|+|||+|++|++.|++++++.|+
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~   69 (185)
T 3mti_A           18 EVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI   69 (185)
T ss_dssp             TTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             HhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            35678999999999999999999997 99999999999999999999998887

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.80  E-value=1.4e-08  Score=101.21  Aligned_cols=62  Identities=16%  Similarity=0.267  Sum_probs=54.3

Q ss_pred             HHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          539 HSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       539 ~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ...+++.+. ++++.+|||||||+|.++..+++..+++|+|||+|++|++.|+++++..|+++
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~   96 (267)
T 3kkz_A           34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN   96 (267)
T ss_dssp             HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence            344566665 78899999999999999999999866799999999999999999999988764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.79  E-value=1e-08  Score=95.05  Aligned_cols=63  Identities=21%  Similarity=0.242  Sum_probs=56.2

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....+++.+.++++++|||||||+|.++..++++ .+++|+|+|+|+++++.|+++++..|+.
T Consensus        12 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~   75 (178)
T 3hm2_A           12 HVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS   75 (178)
T ss_dssp             HHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            34457788888999999999999999999999987 3789999999999999999999988876

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.79  E-value=5.1e-09  Score=105.76  Aligned_cols=99  Identities=18%  Similarity=0.266  Sum_probs=50.5

Q ss_pred             CchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHH
Q 036521          489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEV  568 (602)
Q Consensus       489 ~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~l  568 (602)
                      ++.....+++.+|||.....|.........|          .+.... +.+...+....++++.+|||||||+|.++..+
T Consensus        14 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l   82 (298)
T 1ri5_A           14 QAMEGKKEEIREHYNSIRERGRESRQRSKTI----------NIRNAN-NFIKACLIRLYTKRGDSVLDLGCGKGGDLLKY   82 (298)
T ss_dssp             ---------------------------CCSH----------HHHHHH-HHHHHHHHHHHCCTTCEEEEETCTTTTTHHHH
T ss_pred             chhhhhHHHHHHHHHHhhcccccccccchhh----------hHHHHH-HHHHHHHHHHhCCCCCeEEEECCCCCHHHHHH
Confidence            4555667789999998755443221111111          111111 22222333334678899999999999999999


Q ss_pred             HhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          569 VRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       569 a~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ++....+|+|+|+|+++++.|++++...++
T Consensus        83 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~  112 (298)
T 1ri5_A           83 ERAGIGEYYGVDIAEVSINDARVRARNMKR  112 (298)
T ss_dssp             HHHTCSEEEEEESCHHHHHHHHHHHHTSCC
T ss_pred             HHCCCCEEEEEECCHHHHHHHHHHHHhcCC
Confidence            886334999999999999999999987765

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.79  E-value=9e-09  Score=101.43  Aligned_cols=62  Identities=24%  Similarity=0.385  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ...+..++..+..+++.+|||||||+|.++..++++ |++|+|+|+|++|++.|+++++..++
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~   88 (252)
T 1wzn_A           27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL   88 (252)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC
Confidence            445566777777778889999999999999999996 89999999999999999999987765

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.78  E-value=1.1e-08  Score=114.57  Aligned_cols=119  Identities=12%  Similarity=0.071  Sum_probs=87.1

Q ss_pred             hhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCcee--EEEecCCe-------EEE-EeC
Q 036521          103 FSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVC--SVLQYDEG-------RTE-VRG  172 (602)
Q Consensus       103 ~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~--~i~~~~~g-------v~v-~~~  172 (602)
                      .+++.++.+.-.      ....+++.+.||+++|+++|++.+.. |+.|+++++|+  +|.+++++       |+| .+.
T Consensus       322 ~S~le~L~~~~~------~~~~~~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~  394 (721)
T 3ayj_A          322 ISLVEMMRLILW------DYSNEYTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANACHSGTASARAQLLSYDS  394 (721)
T ss_dssp             BBHHHHHHHHHT------TTTCEECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEET
T ss_pred             hhHHHHHHHHhc------CCccceeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECCCCCccccceEEEEEec
Confidence            455555555421      23456889999999999999999732 56899999999  99987665       888 446


Q ss_pred             CCc--EEecCEEEEecChHHHHh------hc----------------------cCC-C-C-------HHHHhhccCcccc
Q 036521          173 DGF--QGFYDGCIMAVHAPDALR------IL----------------------GNQ-S-T-------FEEKRLLGAFQYV  213 (602)
Q Consensus       173 ~g~--~~~ad~VI~A~p~~~a~~------ll----------------------~~~-~-~-------~~~~~~l~~~~y~  213 (602)
                      +|+  ++.||+||+|+|...+..      |-                      .++ + +       +...++++++.|.
T Consensus       395 ~G~~~~~~aD~VIvTvP~~~L~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~  474 (721)
T 3ayj_A          395 HNAVHSEAYDFVILAVPHDQLTPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMA  474 (721)
T ss_dssp             TCCEEEEEESEEEECSCHHHHHHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEE
T ss_pred             CCceEEEEcCEEEECCCHHHHhhccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcc
Confidence            676  689999999999998854      31                      122 2 4       5678889999997


Q ss_pred             ce-eEEEec-----CCCCCCC
Q 036521          214 YS-DIFLHR-----DKNFMPR  228 (602)
Q Consensus       214 ~~-~~vl~~-----d~~l~p~  228 (602)
                      +. -+.+.+     +..++..
T Consensus       475 ~s~Kv~l~~~~~~~~~~fW~~  495 (721)
T 3ayj_A          475 RSSKVFATVKTAALDQPWVPQ  495 (721)
T ss_dssp             CEEEEEEEEEGGGGGSTTSCE
T ss_pred             cceEEEEEEccccCCCCcccc
Confidence            65 466777     6666654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.78  E-value=1.4e-08  Score=100.30  Aligned_cols=94  Identities=13%  Similarity=0.017  Sum_probs=62.8

Q ss_pred             hHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccC--CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCC
Q 036521          506 NELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV--SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLS  582 (602)
Q Consensus       506 ~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l--~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S  582 (602)
                      ..+...+.+..+..+.+.|-....+-.+ ....++.+++.+..  .++.+|||+|||+|.++..++++ .+++|+|+|+|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~p~~~~r~~-~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s   98 (254)
T 2h00_A           20 CTLLREDFGLSIDIPLERLIPTVPLRLN-YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVD   98 (254)
T ss_dssp             HHHHHHHHCCCCCCCTTSCCCCHHHHHH-HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESC
T ss_pred             HHHHHHcCCeeeecCccccCCCccchHH-HHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECC
Confidence            3344444455544445544322111111 12334444544432  25789999999999999999886 47899999999


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 036521          583 AEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       583 ~~~l~~a~~~~~~~gl~~  600 (602)
                      ++|++.|+++++..++++
T Consensus        99 ~~~~~~a~~~~~~~~~~~  116 (254)
T 2h00_A           99 DMCFNYAKKNVEQNNLSD  116 (254)
T ss_dssp             HHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHcCCCc
Confidence            999999999999988764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.77  E-value=1.7e-08  Score=93.78  Aligned_cols=58  Identities=10%  Similarity=0.301  Sum_probs=49.9

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+...+  .+.++|||||||||.+++.++.. .+++|+++|+|+.|++.+++++...|+.+
T Consensus        42 ~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~  100 (200)
T 3fzg_A           42 YVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTI  100 (200)
T ss_dssp             HHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSS
T ss_pred             HHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence            444554  45679999999999999999776 57899999999999999999999998874

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.77  E-value=7.7e-09  Score=104.05  Aligned_cols=62  Identities=21%  Similarity=0.246  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++.+..+++.+..+ +.+|||||||+|.++..++++ +++|+|+|+|++|++.|+++++..|+.
T Consensus        55 ~~~l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~  116 (285)
T 4htf_A           55 WQDLDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVS  116 (285)
T ss_dssp             HHHHHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCG
T ss_pred             HHHHHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            34466777777654 679999999999999999996 999999999999999999999887764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.73  E-value=2.6e-08  Score=94.90  Aligned_cols=62  Identities=13%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ....+++.++++++.+|||||||+|.+++.+++.. +++|+|+|+|+++++.|+++++..|+.
T Consensus        28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~   90 (204)
T 3e05_A           28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR   90 (204)
T ss_dssp             HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            33567888899999999999999999999999972 489999999999999999999988763

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.72  E-value=2.7e-08  Score=98.18  Aligned_cols=62  Identities=16%  Similarity=0.220  Sum_probs=54.1

Q ss_pred             HHHHHHHc-cCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          539 HSLQIEKA-RVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       539 ~~~l~~~l-~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ...+++.+ .++++.+|||||||+|.++..++++.+++|+|+|+|+++++.|+++++..|+.+
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~   96 (257)
T 3f4k_A           34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCAD   96 (257)
T ss_dssp             HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            33456665 678899999999999999999999866699999999999999999999988765

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.72  E-value=1.8e-08  Score=93.65  Aligned_cols=62  Identities=15%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             HHHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          538 KHSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       538 ~~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+.+++.+. ..++.+|||+|||+|.+++.++++...+|+|+|+|+++++.|+++++..++.
T Consensus        18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~   80 (177)
T 2esr_A           18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE   80 (177)
T ss_dssp             CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG
T ss_pred             HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            3445666665 6688899999999999999999873469999999999999999999988765

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.70  E-value=1.6e-08  Score=100.27  Aligned_cols=65  Identities=20%  Similarity=0.187  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          534 AQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       534 aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++...++.+++.+.++++.+|||||||+|.++..++++ +.+|+|+|+|++|++.|++++++.|+.
T Consensus        21 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~   85 (260)
T 1vl5_A           21 AKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ   85 (260)
T ss_dssp             --CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            33444567888888889999999999999999999986 679999999999999999999888764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.69  E-value=1.8e-08  Score=100.65  Aligned_cols=81  Identities=23%  Similarity=0.336  Sum_probs=55.4

Q ss_pred             ccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          519 YSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       519 ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      |..+|+......+........+.+.....++++.+|||||||+|.++..++++. +++|+|+|+|+.+++.|++++...+
T Consensus         6 Y~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~   85 (276)
T 3mgg_A            6 YVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG   85 (276)
T ss_dssp             -----------------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             cccCCCHHHHhhHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            444555444455555555555556666677899999999999999999999973 7899999999999999999998887


Q ss_pred             CC
Q 036521          598 LQ  599 (602)
Q Consensus       598 l~  599 (602)
                      +.
T Consensus        86 ~~   87 (276)
T 3mgg_A           86 IK   87 (276)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.69  E-value=8.9e-09  Score=100.83  Aligned_cols=51  Identities=22%  Similarity=0.069  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..+|.+|||||||+|..+.+++++.+.+|||||+|++|++.|+++++..+.
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~  108 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH  108 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC
Confidence            468889999999999999999987667999999999999999999887764

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.69  E-value=4.5e-08  Score=90.92  Aligned_cols=62  Identities=16%  Similarity=0.340  Sum_probs=55.2

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...+.+++.+.+.++.+|||+|||+|.++..+++ .+.+|+|+|+|+++++.|+++++..|++
T Consensus        22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~   83 (183)
T 2yxd_A           22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK   83 (183)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            3445677778888999999999999999999999 6899999999999999999999988873

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.69  E-value=1.6e-08  Score=99.08  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=46.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .++.+|||+|||+|.+++.++++ +.+|+|+|+|+.|++.|+++++..|++
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~  126 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIA  126 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCG
T ss_pred             cCCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            37889999999999999999996 899999999999999999999988873

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.69  E-value=3.9e-08  Score=93.69  Aligned_cols=81  Identities=16%  Similarity=0.150  Sum_probs=55.9

Q ss_pred             HHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHH
Q 036521          509 FALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKY  588 (602)
Q Consensus       509 y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~  588 (602)
                      +..++++.+.|+++...        ......+.+...  ++++.+|||||||+|.++..+++....+|+|+|+|+++++.
T Consensus        29 ~~~~~~~~~~f~~~~~~--------~~~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~   98 (205)
T 3grz_A           29 EIIRLDPGLAFGTGNHQ--------TTQLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA   98 (205)
T ss_dssp             EEEEESCC-----CCHH--------HHHHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             eeEEecCCcccCCCCCc--------cHHHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            34556777766655331        112222222222  56889999999999999999998634599999999999999


Q ss_pred             HHHHHHHcCCC
Q 036521          589 AEMKVNEAGLQ  599 (602)
Q Consensus       589 a~~~~~~~gl~  599 (602)
                      |+++++..++.
T Consensus        99 a~~~~~~~~~~  109 (205)
T 3grz_A           99 AEENAALNGIY  109 (205)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999988865

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.67  E-value=4.4e-08  Score=93.64  Aligned_cols=62  Identities=16%  Similarity=0.072  Sum_probs=56.2

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....+++.+.++++++|||||||+|.++..+++. +.+|+|+|+|+++++.|+++++..|+.
T Consensus        64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~  125 (210)
T 3lbf_A           64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH  125 (210)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence            44556788889999999999999999999999996 899999999999999999999988765

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.66  E-value=2.7e-08  Score=95.71  Aligned_cols=54  Identities=26%  Similarity=0.235  Sum_probs=47.6

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ..+++.+..+++.+|||||||+|.++..++++ +++|+|+|+|+++++.|+++..
T Consensus        35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~   88 (220)
T 3hnr_A           35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP   88 (220)
T ss_dssp             HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC
T ss_pred             HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC
Confidence            34566666678899999999999999999996 8999999999999999998864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.66  E-value=6.4e-08  Score=93.89  Aligned_cols=55  Identities=24%  Similarity=0.342  Sum_probs=49.4

Q ss_pred             HHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          544 EKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ....++++.+|||+||| +|.+++.+++..+.+|+|+|+|+++++.|+++++..++
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  104 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS  104 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            33446789999999999 99999999986588999999999999999999998876

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.65  E-value=3.4e-08  Score=100.20  Aligned_cols=62  Identities=19%  Similarity=0.288  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ....+.+++.+++.++++|||||||+|.++..++++ +++|+|||+|+.+++.|+++++..++
T Consensus        28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~   89 (299)
T 2h1r_A           28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY   89 (299)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            345667888888999999999999999999999996 88999999999999999999987665

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.65  E-value=3e-08  Score=104.96  Aligned_cols=62  Identities=16%  Similarity=0.343  Sum_probs=54.6

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHH-------HHHHHHcCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYA-------EMKVNEAGL  598 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a-------~~~~~~~gl  598 (602)
                      ..+..+++.+++++|++|||||||+|.+++.+|+..++ +|+|||+|+++++.|       +++++..|+
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl  298 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM  298 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC
Confidence            34557788899999999999999999999999997564 899999999999999       899888884

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.65  E-value=4.6e-08  Score=91.98  Aligned_cols=50  Identities=16%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      .++.+|||+|||+|.+++.++++...+|+|||+|++|++.|+++++..++
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   92 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL   92 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            57889999999999999988886445899999999999999999998887

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.64  E-value=2.5e-08  Score=96.13  Aligned_cols=83  Identities=11%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             HHhhHhhhccchHHHHhhcC-CCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC
Q 036521          495 RRNISYHYDLSNELFALFMD-ESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG  573 (602)
Q Consensus       495 ~~~i~~~Yd~~~~~y~~~~~-~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g  573 (602)
                      .+.+.++||...+.|..... ....              .........+++.+...++.+|||||||+|.++..++++ +
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~   74 (227)
T 3e8s_A           10 EDALLDSWHQNAQAWIDAVRHGAIE--------------SRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR-G   74 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCH--------------HHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-T
T ss_pred             HHHHHHHHHhhHHHHHHHhcccccc--------------cccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-C
Confidence            45677888877666655332 2111              111122334566666667789999999999999999996 8


Q ss_pred             CEEEEEcCCHHHHHHHHHH
Q 036521          574 CNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       574 ~~v~gid~S~~~l~~a~~~  592 (602)
                      ++|+|+|+|+++++.|+++
T Consensus        75 ~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           75 IEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             CEEEEEESCHHHHHHHHHT
T ss_pred             CEEEEEcCCHHHHHHHHHh
Confidence            9999999999999999987

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.63  E-value=5.1e-08  Score=95.21  Aligned_cols=48  Identities=29%  Similarity=0.345  Sum_probs=44.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ++.+|||||||+|.++..++++ +.+|+|+|+|++|++.|+++....++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~   84 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL   84 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC
Confidence            7789999999999999999996 89999999999999999999987654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.63  E-value=6.1e-08  Score=100.74  Aligned_cols=58  Identities=21%  Similarity=0.373  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE-EEEEcCCHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN-YTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~-v~gid~S~~~l~~a~~~~  593 (602)
                      ...+..+++.+++++|++|||||||+|.+++.+|.+.++. |+|||+|+++++.|++++
T Consensus       159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~  217 (438)
T 3uwp_A          159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMD  217 (438)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence            4566778999999999999999999999999999876774 999999999999998864

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.63  E-value=3.5e-08  Score=109.18  Aligned_cols=56  Identities=20%  Similarity=0.371  Sum_probs=47.9

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..+...++  .+.+|||||||+|.++..+|++ |++|||||+|+++++.|+.++.+.|.
T Consensus        58 ~~~~~~~~--~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~  113 (569)
T 4azs_A           58 DNLSRALG--RPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPD  113 (569)
T ss_dssp             HHHHHHHT--SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTT
T ss_pred             HHHHhhcC--CCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCC
Confidence            34444443  4569999999999999999996 99999999999999999999988773

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.63  E-value=4.3e-08  Score=92.71  Aligned_cols=57  Identities=18%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      .+....++++++|||+|||+|.++..++++.  +++|+|+|+|+++++.|+++++..|+
T Consensus        14 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   72 (197)
T 3eey_A           14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL   72 (197)
T ss_dssp             HHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3445567899999999999999999999973  47999999999999999999998877

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.62  E-value=8.5e-08  Score=89.82  Aligned_cols=61  Identities=21%  Similarity=0.426  Sum_probs=55.0

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+.+++.+..+++.+|||+|||+|.++..++++ +++|+|+|+|+++++.|++++...++++
T Consensus        41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~  101 (194)
T 1dus_A           41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDN  101 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            346778888889999999999999999999997 8999999999999999999999888764

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.62  E-value=5.5e-08  Score=90.86  Aligned_cols=61  Identities=18%  Similarity=0.089  Sum_probs=50.9

Q ss_pred             HHHHHHHc-cCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          539 HSLQIEKA-RVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       539 ~~~l~~~l-~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+.+++.+ ...++.+|||+|||+|.+++.++++...+|+|+|+|+++++.|+++++..++.
T Consensus        32 ~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~   93 (187)
T 2fhp_A           32 KESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP   93 (187)
T ss_dssp             HHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            34455555 34578899999999999999998864479999999999999999999988764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.62  E-value=5e-08  Score=93.84  Aligned_cols=63  Identities=19%  Similarity=0.376  Sum_probs=53.4

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...+.+++.+...++.+|||||||+|.++..++++.+ ++|+|+|+|+++++.|+++++..++.
T Consensus        16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~   79 (217)
T 3jwh_A           16 QRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLP   79 (217)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCC
Confidence            3445666777767888999999999999999999733 79999999999999999999877764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.62  E-value=4.1e-08  Score=97.22  Aligned_cols=60  Identities=18%  Similarity=0.349  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+..+.+++.++++++.+|||||||+|.++..++++.+++|+|+|+|++|++.|++++..
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~  100 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG  100 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc
Confidence            344567888999999999999999999999999997689999999999999999988643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.61  E-value=1e-07  Score=92.22  Aligned_cols=65  Identities=15%  Similarity=0.145  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          535 QMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       535 q~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.+.+..++...+.+++.+|||||||+|..++.+|+.  .+++|++||+|+++++.|+++++.+|++
T Consensus        41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~  107 (221)
T 3dr5_A           41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS  107 (221)
T ss_dssp             HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            3456667777766666779999999999999999986  3789999999999999999999999986

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.61  E-value=5.1e-08  Score=93.37  Aligned_cols=63  Identities=19%  Similarity=0.305  Sum_probs=55.5

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ...+.+++.+.++++ +|||||||+|.++..++++.+++|+|+|+|+++++.|+++++..++.+
T Consensus        31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~   93 (219)
T 3dlc_A           31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLND   93 (219)
T ss_dssp             HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccC
Confidence            445677888888777 999999999999999999767899999999999999999999888753

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.61  E-value=5.6e-08  Score=96.21  Aligned_cols=78  Identities=22%  Similarity=0.394  Sum_probs=56.0

Q ss_pred             hhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHH
Q 036521          511 LFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAE  590 (602)
Q Consensus       511 ~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~  590 (602)
                      ..+++.+.|..+....         .+.....+++. ++++.+|||+|||+|.+++.+++. |++|+|+|+|+.+++.|+
T Consensus        91 ~~l~p~~~fgtg~~~t---------t~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~  159 (254)
T 2nxc_A           91 LVIEPGMAFGTGHHET---------TRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAE  159 (254)
T ss_dssp             EECCCC-----CCSHH---------HHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHH
T ss_pred             EEECCCccccCCCCHH---------HHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHH
Confidence            4567777776554421         11222233333 578899999999999999999985 779999999999999999


Q ss_pred             HHHHHcCCC
Q 036521          591 MKVNEAGLQ  599 (602)
Q Consensus       591 ~~~~~~gl~  599 (602)
                      ++++..+++
T Consensus       160 ~n~~~~~~~  168 (254)
T 2nxc_A          160 ANAKRNGVR  168 (254)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHcCCc
Confidence            999988763

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.60  E-value=6.1e-06  Score=88.61  Aligned_cols=122  Identities=11%  Similarity=-0.038  Sum_probs=80.9

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCC-h-hhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCP-S-EGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNK  139 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~-~-~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~  139 (602)
                      .+.+|+.+|+++++.++.+++.+...+.  +...+ . ......++..+..+....+  . .+.+.|..+.||+++++++
T Consensus       173 ~~~~s~~~~l~~~~~~~~l~~~l~~~~~--l~~~~~~~~~p~~~~~~~~~~~~~s~~--~-~~~~~~~~p~gG~~~l~~a  247 (453)
T 2bcg_G          173 LDKNTMDEVYYKFGLGNSTKEFIGHAMA--LWTNDDYLQQPARPSFERILLYCQSVA--R-YGKSPYLYPMYGLGELPQG  247 (453)
T ss_dssp             TTTSBHHHHHHHTTCCHHHHHHHHHHTS--CCSSSGGGGSBHHHHHHHHHHHHHHHH--H-HSSCSEEEETTCTTHHHHH
T ss_pred             cccCCHHHHHHHhCCCHHHHHHHHHHHH--hccCccccCCchHHHHHHHHHHHHHHH--h-hcCCceEeeCCCHHHHHHH
Confidence            3678999999999889887764432221  11110 0 0111222222222222111  0 1234566778999999999


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEec--CCeE-EEEeCCCcEEecCEEEEecChH
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQY--DEGR-TEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~--~~gv-~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      |++.+.+.|++|+++++|++|..+  ++++ .|.+ +|+++.||+||+|+++.
T Consensus       248 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          248 FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred             HHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence            999998889999999999999987  6665 4555 47689999999998775

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.60  E-value=1.6e-08  Score=98.38  Aligned_cols=57  Identities=16%  Similarity=0.320  Sum_probs=48.2

Q ss_pred             HHHHHHcc-CCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          540 SLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       540 ~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +.+++.+. ..++.+|||||||+|.++..+++.. +++|+|+|+|+++++.|++++...
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   91 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN   91 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC
Confidence            44555554 5678899999999999999999974 889999999999999999987543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.60  E-value=5.9e-08  Score=97.70  Aligned_cols=63  Identities=19%  Similarity=0.240  Sum_probs=53.2

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .++.+++.+...++.+|||||||+|.+++.++++.+++|+|+|+|+++++.|+++++..|+++
T Consensus       111 lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~  173 (284)
T 1nv8_A          111 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSD  173 (284)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            344555555445678999999999999999998657899999999999999999999998865

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.60  E-value=1.6e-08  Score=98.97  Aligned_cols=48  Identities=15%  Similarity=0.173  Sum_probs=43.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +++.+|||||||+|.++..++++.+.+|+|+|+|++|++.|++++...
T Consensus        78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  125 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE  125 (241)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhc
Confidence            368899999999999999999875569999999999999999998665

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.60  E-value=1.3e-08  Score=102.56  Aligned_cols=56  Identities=9%  Similarity=0.006  Sum_probs=43.4

Q ss_pred             HHHHHHHccC--CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          539 HSLQIEKARV--SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       539 ~~~l~~~l~l--~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +..+.+.+..  .++.+|||||||+|..+..++...+.+|+|||+|++|++.|+++++
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence            3444444432  3778999999999996665555457899999999999999998764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.60  E-value=5.3e-08  Score=94.11  Aligned_cols=54  Identities=26%  Similarity=0.293  Sum_probs=48.2

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ...++.+|||||||+|..++.+|+.  .+++|+|||+|+++++.|+++++..|+.+
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  110 (221)
T 3u81_A           55 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQD  110 (221)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGG
T ss_pred             HhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCC
Confidence            3446789999999999999999985  37899999999999999999999988764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.60  E-value=1.3e-08  Score=99.00  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=44.0

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCC-HHHHHHH---HHHHHHcCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLS-AEQLKYA---EMKVNEAGLQ  599 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S-~~~l~~a---~~~~~~~gl~  599 (602)
                      .+++++|||||||+|.++..+|++ .+++|+|||+| +.|++.|   ++++++.|+.
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~   78 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS   78 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC
Confidence            468889999999999999999965 68899999999 6666666   8888777765

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.60  E-value=5.7e-08  Score=93.11  Aligned_cols=80  Identities=16%  Similarity=0.070  Sum_probs=58.0

Q ss_pred             HHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhc
Q 036521          493 QARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQ  571 (602)
Q Consensus       493 ~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~  571 (602)
                      ...+.+..+||.....|+..+...                  .......+++.+. ++++.+|||||||+|.++..++++
T Consensus         6 ~~~~~~~~~~~~~a~~y~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~   67 (218)
T 3ou2_A            6 GLIESQLSYYRARASEYDATFVPY------------------MDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGL   67 (218)
T ss_dssp             HHHHHHHHHHHHHGGGHHHHHHHH------------------HTTTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhH------------------HHHHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc
Confidence            345556677877666665522111                  0011234445554 678889999999999999999996


Q ss_pred             cCCEEEEEcCCHHHHHHHHH
Q 036521          572 TGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       572 ~g~~v~gid~S~~~l~~a~~  591 (602)
                       +++|+|+|+|+++++.|++
T Consensus        68 -~~~v~~~D~s~~~~~~a~~   86 (218)
T 3ou2_A           68 -ADRVTALDGSAEMIAEAGR   86 (218)
T ss_dssp             -SSEEEEEESCHHHHHHHGG
T ss_pred             -CCeEEEEeCCHHHHHHHHh
Confidence             8999999999999999987

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.59  E-value=4.6e-08  Score=94.40  Aligned_cols=53  Identities=23%  Similarity=0.255  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +++|++|||||||+|.+++.+|+.. ..+|+++|+|+.+++.|+++++.+|+++
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~   66 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKE   66 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            4688999999999999999999972 4589999999999999999999999976

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.59  E-value=6.9e-08  Score=88.70  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=45.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +++.+|||+|||+|.++..++++ +.+|+|+|+|+++++.|+++++..++
T Consensus        40 ~~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~   88 (171)
T 1ws6_A           40 PRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL   88 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC
T ss_pred             cCCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            37889999999999999999996 78899999999999999999988775

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.59  E-value=3.1e-08  Score=94.09  Aligned_cols=81  Identities=11%  Similarity=0.104  Sum_probs=57.9

Q ss_pred             HhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE
Q 036521          496 RNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN  575 (602)
Q Consensus       496 ~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~  575 (602)
                      +.+.++||...+.|+..+.....+.. .           ....+..++..    .+.+|||||||+|.++..++++ |++
T Consensus         3 ~~~~~~y~~~a~~y~~~~~~~~~~~~-~-----------~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~-~~~   65 (203)
T 3h2b_A            3 DDVSKAYSSPTFDAEALLGTVISAED-P-----------DRVLIEPWATG----VDGVILDVGSGTGRWTGHLASL-GHQ   65 (203)
T ss_dssp             CHHHHHHHCTTTCHHHHTCSSCCTTC-T-----------THHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHT-TCC
T ss_pred             HHHHHHHhhHHHHHHHHhhhhccccH-H-----------HHHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhc-CCe
Confidence            35678888888777665543321110 0           02222333332    2779999999999999999996 889


Q ss_pred             EEEEcCCHHHHHHHHHHH
Q 036521          576 YTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       576 v~gid~S~~~l~~a~~~~  593 (602)
                      |+|+|+|++|++.|+++.
T Consensus        66 v~gvD~s~~~~~~a~~~~   83 (203)
T 3h2b_A           66 IEGLEPATRLVELARQTH   83 (203)
T ss_dssp             EEEECCCHHHHHHHHHHC
T ss_pred             EEEEeCCHHHHHHHHHhC
Confidence            999999999999999873

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.58  E-value=5.6e-08  Score=96.07  Aligned_cols=47  Identities=17%  Similarity=0.128  Sum_probs=42.5

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .++++.+|||+|||+|..+..||++ |++|+|||+|+.|++.|+++..
T Consensus        65 ~~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~  111 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQN  111 (252)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTT
T ss_pred             cCCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcc
Confidence            4467889999999999999999996 9999999999999999987753

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.58  E-value=6.6e-08  Score=95.54  Aligned_cols=59  Identities=15%  Similarity=0.191  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ....+.+++.+++.++++|||||||+|.++..++++ +++|+|||+|++|++.+++++..
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~   73 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ   73 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh
Confidence            345667899999999999999999999999999996 78999999999999999998854

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.58  E-value=5.1e-08  Score=95.02  Aligned_cols=54  Identities=15%  Similarity=0.215  Sum_probs=48.7

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +++|++|||||||+|.+++.+|+.. ..+|+++|+|+.+++.|+++++.+|++++
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~   73 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQ   73 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            4688999999999999999999972 34899999999999999999999999763

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.58  E-value=9.9e-08  Score=93.33  Aligned_cols=62  Identities=26%  Similarity=0.346  Sum_probs=55.1

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....+++.++++++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++++..|+.
T Consensus         8 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~   69 (239)
T 1xxl_A            8 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE   69 (239)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             CCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            33446788889999999999999999999999986 779999999999999999999887764

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.58  E-value=6.1e-08  Score=93.31  Aligned_cols=64  Identities=17%  Similarity=0.327  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ....+.+++.+...++.+|||||||+|.++..++++.. .+|+|||+|+++++.|++++...++.
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~   79 (219)
T 3jwg_A           15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLP   79 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSC
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccc
Confidence            34445566666666788999999999999999998732 79999999999999999998776654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.57  E-value=6.3e-08  Score=101.87  Aligned_cols=100  Identities=20%  Similarity=0.208  Sum_probs=53.5

Q ss_pred             HHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHcc----------CCCCCeEEEEecCch
Q 036521          493 QARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKAR----------VSKGHGVLEIGCGWG  562 (602)
Q Consensus       493 ~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~----------l~~g~~vLDiGcG~G  562 (602)
                      ..++.+.+||+....-|..+    ..+.|.+.........+........+++.+.          +.++.+|||||||+|
T Consensus        20 ~~~~~v~~~Y~~~~~~~~~~----~~~~~~~~~~~p~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlGcG~G   95 (383)
T 4fsd_A           20 SIRDHVADYYGKTLQSSADL----KTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTG   95 (383)
T ss_dssp             ----------------------------------CCHHHHHHHHTSCHHHHHHCCSCCCCCSCGGGGTTCEEEEESCTTS
T ss_pred             HHHHHHHHHHHHHhcchhhc----ccccccCCCCCCHHHHHHHHHhhHHHHHHhcCCCCccccccCCCCCEEEEecCccC
Confidence            44556777776654444322    2334444443333344444444445555542          568899999999999


Q ss_pred             HHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          563 TFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       563 ~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      .++..+++.  .+++|+|+|+|++|++.|+++++..
T Consensus        96 ~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~  131 (383)
T 4fsd_A           96 RDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYH  131 (383)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence            999999987  3679999999999999999998754

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.57  E-value=1.2e-07  Score=89.40  Aligned_cols=57  Identities=21%  Similarity=0.295  Sum_probs=51.0

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      .+++.+...++.+|||||||+|.++..++++ +++|+|+|+|+++++.|+++++..++
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~   79 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL   79 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC
Confidence            4556667778889999999999999999996 89999999999999999999988776

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.57  E-value=8.4e-08  Score=92.26  Aligned_cols=51  Identities=29%  Similarity=0.399  Sum_probs=46.6

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .++.+|||||||+|.+++.+|++ .+++|+|||+|+++++.|+++++..|+.
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~   88 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ   88 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC
Confidence            36789999999999999999987 4789999999999999999999988874

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.57  E-value=5.6e-08  Score=93.92  Aligned_cols=54  Identities=20%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +++|++|||||||+|.+++.+|+.. ..+|+++|+|+.+++.|+++++.+|++++
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~   73 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSK   73 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTT
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence            4688999999999999999999972 35899999999999999999999999763

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.57  E-value=1.3e-07  Score=90.73  Aligned_cols=63  Identities=25%  Similarity=0.258  Sum_probs=55.1

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....+++.+.++++.+|||||||+|.++..+++..+  .+|+|+|+|+++++.|++++...|+.
T Consensus        64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  128 (215)
T 2yxe_A           64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD  128 (215)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            3445677888889999999999999999999999754  89999999999999999999887754

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.57  E-value=2.9e-08  Score=98.54  Aligned_cols=56  Identities=20%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      +..+.+++.+.++++.+|||||||+|.++..+++ .+++|+|+|+|+.|++.|+++.
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~   76 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP   76 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc
Confidence            4556778888888999999999999999999998 5899999999999999887653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.57  E-value=6.2e-08  Score=92.28  Aligned_cols=49  Identities=12%  Similarity=0.095  Sum_probs=44.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ++.+|||+|||+|.+++.++++...+|+|||+|++|++.|+++++..|+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~  101 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC  101 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            6789999999999999988776335999999999999999999999887

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.57  E-value=1.7e-07  Score=92.85  Aligned_cols=85  Identities=20%  Similarity=0.135  Sum_probs=60.5

Q ss_pred             ccCchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHH
Q 036521          487 RRNSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAI  566 (602)
Q Consensus       487 ~~~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~  566 (602)
                      .++++....+.++++||...+...             |        ....+.+..++..+- +++.+|||||||+|.++.
T Consensus        13 ~~~~~~~~~~~~a~~Yd~~~~~~~-------------~--------~~~~~~~~~~l~~~~-~~~~~vLDiGcG~G~~~~   70 (260)
T 2avn_A           13 MKLRSWEFYDRIARAYDSMYETPK-------------W--------KLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSL   70 (260)
T ss_dssp             EECCHHHHHHHHHHHHGGGGCSHH-------------H--------HHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHH
T ss_pred             hhhhhcchhhHHHHHHHHhccccc-------------h--------hHHHHHHHHHHHHhc-CCCCeEEEeCCCcCHHHH
Confidence            356677777788888876541100             0        111223333444432 377899999999999999


Q ss_pred             HHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          567 EVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       567 ~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .++++ +++|+|+|+|++|++.|+++..
T Consensus        71 ~l~~~-~~~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           71 FLQER-GFEVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             HHHTT-TCEEEEEESCHHHHHHHHHHTC
T ss_pred             HHHHc-CCeEEEEeCCHHHHHHHHhhcC
Confidence            99996 8999999999999999998853

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.56  E-value=8.9e-08  Score=96.27  Aligned_cols=54  Identities=19%  Similarity=0.370  Sum_probs=48.0

Q ss_pred             HHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          544 EKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +.+...++.+|||||||+|.++..++++ |++|+|+|+|+.+++.|++++...|+
T Consensus       114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~  167 (286)
T 3m70_A          114 DAAKIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL  167 (286)
T ss_dssp             HHHHHSCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            3444447889999999999999999996 89999999999999999999998876

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.56  E-value=5.1e-08  Score=98.81  Aligned_cols=58  Identities=22%  Similarity=0.299  Sum_probs=49.9

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ....+++.+..+++ +|||||||+|.++..++++ |++|+|||+|++|++.|++++...+
T Consensus        71 ~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~  128 (299)
T 3g2m_A           71 EAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAP  128 (299)
T ss_dssp             HHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcc
Confidence            34456677765555 9999999999999999996 8999999999999999999998765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.56  E-value=4.5e-08  Score=94.97  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ++.++++||++|||+|||+|.++.++|+.  ...+|+|+|+|++|++.+++++++.
T Consensus        70 l~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~  125 (233)
T 4df3_A           70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR  125 (233)
T ss_dssp             CSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC
T ss_pred             hhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh
Confidence            45678999999999999999999999997  3579999999999999999988664

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.56  E-value=8.8e-08  Score=94.68  Aligned_cols=46  Identities=24%  Similarity=0.414  Sum_probs=43.3

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .++++.+|||||||+|.++..++++ +++|+|+|+|++|++.|++++
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~   81 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI   81 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh
Confidence            5678899999999999999999996 899999999999999999987

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.56  E-value=1e-07  Score=93.03  Aligned_cols=63  Identities=22%  Similarity=0.327  Sum_probs=55.5

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....+++.+.++++++|||||||+|.++..+++..+.+|+|+|+|+++++.|+++++..|+.
T Consensus        78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  140 (235)
T 1jg1_A           78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK  140 (235)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            344567778888999999999999999999999974489999999999999999999988764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.55  E-value=1.1e-07  Score=95.74  Aligned_cols=57  Identities=28%  Similarity=0.374  Sum_probs=48.8

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      +.+.+.+...++.+|||||||+|.++..++++ |++|+|+|+|++|++.|++++...+
T Consensus        47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~  103 (293)
T 3thr_A           47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRR  103 (293)
T ss_dssp             HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcc
Confidence            45556666667889999999999999999996 8899999999999999999875543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.55  E-value=7.9e-08  Score=96.80  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ....+.+++.+++.++++|||||||+|.++..++++ +++|+|||+|+.|++.+++++...++
T Consensus        14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~   75 (285)
T 1zq9_A           14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPV   75 (285)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCC
Confidence            455678889999999999999999999999999996 88999999999999999999876554

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.55  E-value=8.6e-08  Score=91.33  Aligned_cols=49  Identities=12%  Similarity=0.082  Sum_probs=44.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ++.+|||+|||+|.+++.++++...+|+|||+|++|++.|+++++..++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~  102 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA  102 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            6789999999999999998876335999999999999999999998886

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.55  E-value=8.7e-08  Score=93.86  Aligned_cols=53  Identities=11%  Similarity=0.153  Sum_probs=47.3

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .++++.+|||||||+|.+++.+|+. .+++|+|||+|++|++.|+++++..|++
T Consensus        67 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~  120 (240)
T 1xdz_A           67 DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE  120 (240)
T ss_dssp             CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            3457889999999999999999964 5789999999999999999999988875

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.54  E-value=1.7e-07  Score=92.42  Aligned_cols=61  Identities=20%  Similarity=0.241  Sum_probs=55.6

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~-g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..++..++++++++|||+|||+|.++..+++. . +.+|+|+|+|+++++.|+++++..|+.+
T Consensus        83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~  145 (255)
T 3mb5_A           83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDD  145 (255)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCC
Confidence            46788889999999999999999999999987 2 7899999999999999999999988765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.54  E-value=2.2e-07  Score=86.82  Aligned_cols=60  Identities=23%  Similarity=0.369  Sum_probs=53.8

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ....+++.+.+.++.+|||+|||+|.++..+++. +++|+|+|+|+++++.|+++++..++
T Consensus        21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~   80 (192)
T 1l3i_A           21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGL   80 (192)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHh-cCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3446677788899999999999999999999996 59999999999999999999988876

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.54  E-value=1.3e-07  Score=93.78  Aligned_cols=60  Identities=13%  Similarity=0.215  Sum_probs=52.8

Q ss_pred             HHHHHccCC-CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVS-KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~-~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+...+.++ ++.+|||+|||+|.+++.++++...+|+|||+|+++++.|+++++..++++
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~   99 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED   99 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcc
Confidence            345556777 899999999999999999999754599999999999999999999998864

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.53  E-value=8.8e-08  Score=94.19  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ....+.+++.+++.++++|||||||+|.++..++++ +++|+|||+|++|++.++++.+
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~   73 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLV   73 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhc
Confidence            455678889999999999999999999999999996 7999999999999999999875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.53  E-value=1.1e-07  Score=92.70  Aligned_cols=58  Identities=17%  Similarity=0.255  Sum_probs=50.2

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ...+.+.++.+|||||||+|..++.+|+. .+++|+|||+|+++++.|+++++..|+.+
T Consensus        64 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  122 (232)
T 3ntv_A           64 KQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFEN  122 (232)
T ss_dssp             HHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            33344457889999999999999999985 37899999999999999999999998864

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.53  E-value=8.4e-08  Score=102.03  Aligned_cols=65  Identities=15%  Similarity=0.109  Sum_probs=58.4

Q ss_pred             CCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          527 EDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       527 ~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      ....+.+...+..+.+++.+.++++.+|||||||+|.++..++++ |++|+|||+|++|++.|+++
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           84 GSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             GCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc
Confidence            345667777888899999999999999999999999999999995 88999999999999999876

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.52  E-value=1.8e-07  Score=90.69  Aligned_cols=44  Identities=32%  Similarity=0.453  Sum_probs=41.3

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      ++++.+|||||||+|.++..++++ +++|+|+|+|+.|++.|+++
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~   89 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN   89 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh
Confidence            367889999999999999999996 89999999999999999988

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.52  E-value=1.7e-07  Score=89.51  Aligned_cols=75  Identities=19%  Similarity=0.222  Sum_probs=57.2

Q ss_pred             HhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE
Q 036521          496 RNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN  575 (602)
Q Consensus       496 ~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~  575 (602)
                      +.+..+||...+.|......                    ...+..++..  ++++.+|||||||+|.++..++++ +++
T Consensus        11 ~~~~~~~~~~~~~y~~~~~~--------------------~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~   67 (211)
T 3e23_A           11 DDTLRFYRGNATAYAERQPR--------------------SATLTKFLGE--LPAGAKILELGCGAGYQAEAMLAA-GFD   67 (211)
T ss_dssp             HHHHHHHHHSHHHHTTCCCC--------------------CHHHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHT-TCE
T ss_pred             HHHHHHHHHHHHHHhhccch--------------------hHHHHHHHHh--cCCCCcEEEECCCCCHHHHHHHHc-CCe
Confidence            34556777777666554332                    1223344444  457889999999999999999996 899


Q ss_pred             EEEEcCCHHHHHHHHHHH
Q 036521          576 YTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       576 v~gid~S~~~l~~a~~~~  593 (602)
                      |+|+|+|+++++.|++++
T Consensus        68 v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           68 VDATDGSPELAAEASRRL   85 (211)
T ss_dssp             EEEEESCHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHhc
Confidence            999999999999999986

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.52  E-value=1.1e-07  Score=91.34  Aligned_cols=60  Identities=25%  Similarity=0.370  Sum_probs=53.6

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.+++.++++++.+|||||||+|.++..+++..  +++|+|+|+|+++++.|++++...++.
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~   88 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK   88 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            356778888999999999999999999999873  479999999999999999999888764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.52  E-value=1.8e-07  Score=96.28  Aligned_cols=52  Identities=19%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..++.+|||+|||+|.+++.+|+. |++|+|||+|+.+++.|+++++..++++
T Consensus       151 ~~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~  202 (332)
T 2igt_A          151 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQ  202 (332)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTT
T ss_pred             cCCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            457789999999999999999995 8899999999999999999999998865

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.51  E-value=1.8e-07  Score=92.01  Aligned_cols=63  Identities=11%  Similarity=0.068  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          533 VAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       533 ~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ..+......+++.+...++.+|||||||+|.++..++++...+|+|+|+|+.+++.|++++..
T Consensus        76 ~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~  138 (254)
T 1xtp_A           76 DVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG  138 (254)
T ss_dssp             HHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc
Confidence            344555567888888888999999999999999999987556899999999999999998753

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.51  E-value=1.6e-07  Score=97.31  Aligned_cols=61  Identities=20%  Similarity=0.258  Sum_probs=52.9

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+.+++.+.+.++++|||||||+|.++..+++...++|+|||+|+ |++.|+++++.+|+++
T Consensus        39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~   99 (348)
T 2y1w_A           39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTD   99 (348)
T ss_dssp             HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTT
T ss_pred             HHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCC
Confidence            346777788888999999999999999999996345999999996 9999999999988754

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.51  E-value=1.3e-07  Score=94.10  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ....+.+++.+++.++ +|||||||+|.++..++++ +++|+|||+|++|++.+++++.
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~   89 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLS   89 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcC
Confidence            4566788999999999 9999999999999999996 7899999999999999999875

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.50  E-value=9.1e-08  Score=91.29  Aligned_cols=62  Identities=23%  Similarity=0.332  Sum_probs=39.1

Q ss_pred             HHHHHHHHHccC-CCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          537 RKHSLQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       537 ~~~~~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..++.+++.+.. .++.+|||+|||+|.++..++++. +++|+|+|+|+++++.|++++...++
T Consensus        16 ~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   79 (215)
T 4dzr_A           16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA   79 (215)
T ss_dssp             HHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------
T ss_pred             HHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence            455667777765 788999999999999999999973 67999999999999999999887664

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.50  E-value=1.9e-07  Score=90.62  Aligned_cols=60  Identities=18%  Similarity=0.299  Sum_probs=53.4

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ...+.+++.+.++++.+|||||||+|.++..+++. +++|+|+|+|+++++.|+++....+
T Consensus        57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~  116 (231)
T 1vbf_A           57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN  116 (231)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC
Confidence            45567788888999999999999999999999996 6999999999999999999986553

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.49  E-value=1.4e-07  Score=94.43  Aligned_cols=57  Identities=18%  Similarity=0.273  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE----EEEEcCCHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN----YTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~----v~gid~S~~~l~~a~~~~  593 (602)
                      ....+.+++.++++++++|||||||+|.++..++++ +.+    |+|||+|++|++.++++.
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~   88 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF   88 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc
Confidence            345567899999999999999999999999999996 555    999999999999999983

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.49  E-value=2e-07  Score=90.01  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ...++.+|||||||+|..+..+|+..  +++|+|+|+|+++++.|+++++..|+++
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  110 (223)
T 3duw_A           55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLND  110 (223)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            34567899999999999999999973  7899999999999999999999998865

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.49  E-value=3.5e-07  Score=89.17  Aligned_cols=76  Identities=26%  Similarity=0.443  Sum_probs=56.6

Q ss_pred             hhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEc
Q 036521          501 HYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGIT  580 (602)
Q Consensus       501 ~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid  580 (602)
                      +||...+.|+...... .|                ....+.+.+.+  +++.+|||||||+|.++..+++.  .+|+|+|
T Consensus         3 ~y~~~a~~yd~~~~~~-~~----------------~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD   61 (243)
T 3d2l_A            3 AYEQFAYVYDELMQDV-PY----------------PEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVD   61 (243)
T ss_dssp             ---CTTHHHHHHTTTC-CH----------------HHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEE
T ss_pred             hHHHHHHHHHHhhhcc-cH----------------HHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEE
Confidence            5777777777765322 12                22334555554  46789999999999999999985  8999999


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 036521          581 LSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       581 ~S~~~l~~a~~~~~~~g  597 (602)
                      +|++|++.|++++...+
T Consensus        62 ~s~~~~~~a~~~~~~~~   78 (243)
T 3d2l_A           62 LSEEMLEIAQEKAMETN   78 (243)
T ss_dssp             SCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhhhhcC
Confidence            99999999999988765

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.49  E-value=3e-08  Score=97.02  Aligned_cols=44  Identities=30%  Similarity=0.569  Sum_probs=40.8

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      ++++.+|||||||+|.++..++++ |++|+|||+|++|++.|+++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh
Confidence            567899999999999999999996 89999999999999999876

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.48  E-value=1.9e-07  Score=94.13  Aligned_cols=58  Identities=24%  Similarity=0.257  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ....+.+++.++++++++|||||||+|.++..++++ +.+|+|||+|+++++.+++++.
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~   93 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKE   93 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhc
Confidence            456678899999999999999999999999999996 8899999999999999999986

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.48  E-value=1.9e-07  Score=94.77  Aligned_cols=50  Identities=16%  Similarity=0.075  Sum_probs=42.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +++.+|||||||+|..+..+++..+.+|+|||+|++|++.|++++.+.++
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~   96 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNS   96 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccc
Confidence            35789999999999866666655468999999999999999999887654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.48  E-value=3.9e-08  Score=94.66  Aligned_cols=52  Identities=21%  Similarity=0.303  Sum_probs=44.0

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .++.+.++++.+|||||||+|.++..++++. +++|+|||+|++|++.+.+++
T Consensus        19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a   71 (218)
T 3mq2_A           19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKA   71 (218)
T ss_dssp             HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHH
T ss_pred             HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            4556667889999999999999999999974 789999999999998754443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.47  E-value=1.5e-07  Score=98.54  Aligned_cols=59  Identities=20%  Similarity=0.288  Sum_probs=52.2

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+.+.+.+.++.+|||||||+|.+++.++++ |+ +|+|||+| +|++.|+++++..|+.+
T Consensus        53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~  112 (376)
T 3r0q_C           53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDH  112 (376)
T ss_dssp             HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTT
T ss_pred             HHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCC
Confidence            44555567788999999999999999999996 66 99999999 99999999999998875

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.47  E-value=1.6e-07  Score=92.70  Aligned_cols=53  Identities=15%  Similarity=0.198  Sum_probs=48.1

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.++.+|||||||+|..++.+|.. .+++|+|||+|+++++.|+++++..|+++
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~  131 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG  131 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc
Confidence            357889999999999999999986 57899999999999999999999998863

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.47  E-value=2.3e-07  Score=97.47  Aligned_cols=52  Identities=27%  Similarity=0.360  Sum_probs=48.1

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .++|++|||+|||+|.+++.+|+. |++|+|+|+|+.+++.|+++++.+|+++
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~  263 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRV  263 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCC
T ss_pred             hcCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCC
Confidence            457999999999999999999995 8889999999999999999999998864

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.47  E-value=1.5e-07  Score=95.15  Aligned_cols=59  Identities=25%  Similarity=0.364  Sum_probs=52.8

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ++.+++.+.+++|.+|||+|||+|+++..++++. +++|+|||+|++|++.|+++++..|
T Consensus        15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g   74 (301)
T 1m6y_A           15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS   74 (301)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            3466788888999999999999999999999974 6899999999999999999987765

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.46  E-value=1.6e-07  Score=92.56  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+..+.+++.+++.++++|||||||+|.++..++++..++|+|||+|+.+++.++++
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc
Confidence            455678899999999999999999999999999996338999999999999999876

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.46  E-value=2e-07  Score=92.40  Aligned_cols=83  Identities=20%  Similarity=0.269  Sum_probs=57.2

Q ss_pred             hHhhhc-cchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEE
Q 036521          498 ISYHYD-LSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNY  576 (602)
Q Consensus       498 i~~~Yd-~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v  576 (602)
                      ...+|+ ...++|+.+....           ............+.+...  ++++.+|||||||+|.++..++++ +.+|
T Consensus        10 ~~~~y~~~~a~~yd~~~~~~-----------~~~~~~~~~~~~~~l~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~v   75 (263)
T 3pfg_A           10 PQADYSGEIAELYDLVHQGK-----------GKDYHREAADLAALVRRH--SPKAASLLDVACGTGMHLRHLADS-FGTV   75 (263)
T ss_dssp             CBCSCCHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHHHHH--CTTCCEEEEETCTTSHHHHHHTTT-SSEE
T ss_pred             cccccchhHHHHHHHHhhcC-----------CCCHHHHHHHHHHHHHhh--CCCCCcEEEeCCcCCHHHHHHHHc-CCeE
Confidence            345677 6677777665311           011112222333333333  346789999999999999999996 8899


Q ss_pred             EEEcCCHHHHHHHHHHHH
Q 036521          577 TGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       577 ~gid~S~~~l~~a~~~~~  594 (602)
                      +|+|+|++|++.|+++..
T Consensus        76 ~gvD~s~~~~~~a~~~~~   93 (263)
T 3pfg_A           76 EGLELSADMLAIARRRNP   93 (263)
T ss_dssp             EEEESCHHHHHHHHHHCT
T ss_pred             EEEECCHHHHHHHHhhCC
Confidence            999999999999998753

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.46  E-value=2e-07  Score=97.54  Aligned_cols=59  Identities=10%  Similarity=0.242  Sum_probs=53.4

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+++.+...++.+|||+|||+|.+++.++++. +++|+|||+|+.+++.|+++++..|++
T Consensus       213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~  272 (375)
T 4dcm_A          213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE  272 (375)
T ss_dssp             HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCC
Confidence            46778887788899999999999999999974 789999999999999999999998865

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.46  E-value=2.2e-07  Score=89.17  Aligned_cols=50  Identities=18%  Similarity=0.134  Sum_probs=43.3

Q ss_pred             ccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          546 ARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      +.+++|++|||||||+|..+..+++.. +.+|+|||+|++|++.+.++++.
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~  103 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE  103 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc
Confidence            567899999999999999999999874 37999999999998877776654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.46  E-value=1.3e-07  Score=92.00  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=47.2

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ++.+.++++.+|||||||+|.++..+++..+ .+|+|||+|+++++.|+++++.
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~  120 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE  120 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc
Confidence            5666788899999999999999999999744 7999999999999999998754

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.45  E-value=2.4e-07  Score=88.88  Aligned_cols=51  Identities=33%  Similarity=0.506  Sum_probs=46.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .++.+|||||||+|.+++.+|++ .+++|+|||+|+++++.|+++++..|+.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~   91 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP   91 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCC
Confidence            46789999999999999999987 4789999999999999999999988874

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.45  E-value=1.9e-07  Score=88.89  Aligned_cols=50  Identities=16%  Similarity=0.302  Sum_probs=45.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++.+|||||||+|.++..+++. .+++|+|+|+|+++++.|+++++..+++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~  115 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE  115 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999986 4789999999999999999999988775

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.45  E-value=2.6e-07  Score=99.69  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=53.4

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..+.+++.+...++.+|||||||+|.+++.+++...++|+|||+|+ |++.|+++++..|+++
T Consensus       146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~  207 (480)
T 3b3j_A          146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTD  207 (480)
T ss_dssp             HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCC
Confidence            3455677777778899999999999999999986456999999999 9999999999998854

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.45  E-value=2.8e-07  Score=90.74  Aligned_cols=54  Identities=22%  Similarity=0.274  Sum_probs=48.7

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+.++.+|||||||+|..+..+|+..  +++|+|||+|+++++.|+++++..|+.+
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~  115 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQ  115 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTT
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            34568899999999999999999973  6899999999999999999999998864

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.45  E-value=1.6e-07  Score=90.07  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=48.1

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ..+...+...++.+|||||||+|.++..++++ +.+|+|+|+|+++++.|++++...
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~   96 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW   96 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC
Confidence            34444667778889999999999999999996 789999999999999999987653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.44  E-value=3e-07  Score=88.81  Aligned_cols=53  Identities=19%  Similarity=0.142  Sum_probs=47.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..++.+|||||||+|..++.+++..  +++|+|+|+|+++++.|+++++..|+.+
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  116 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSD  116 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC
Confidence            3467899999999999999999862  7899999999999999999999998864

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.44  E-value=2.5e-07  Score=90.04  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=50.8

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +...+.+.++.+|||||||+|..+..+++.. +++|+|+|+|+++++.|+++++..|+.+
T Consensus        46 l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  105 (233)
T 2gpy_A           46 LLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLES  105 (233)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            3444455678899999999999999999974 6899999999999999999999988753

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.44  E-value=4.3e-07  Score=86.45  Aligned_cols=56  Identities=13%  Similarity=0.093  Sum_probs=47.5

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +......++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++..++
T Consensus        42 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   97 (207)
T 1wy7_A           42 AYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG   97 (207)
T ss_dssp             HHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT
T ss_pred             HHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            33445668899999999999999999996234899999999999999999887765

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.44  E-value=4.6e-07  Score=91.68  Aligned_cols=55  Identities=24%  Similarity=0.315  Sum_probs=47.1

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      .+... ..+++.+|||||||+|.++..++++  .+++|+|||+|+.|++.|+++++..
T Consensus        28 ~l~~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~   84 (299)
T 3g5t_A           28 MIDEY-HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS   84 (299)
T ss_dssp             HHHHH-CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC
T ss_pred             HHHHH-hcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            34433 3468899999999999999999963  5889999999999999999999876

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.43  E-value=1.9e-07  Score=93.67  Aligned_cols=52  Identities=12%  Similarity=0.178  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +++|++|||+|||+|.+++.+|+. ++ +|+|+|+|+++++.|+++++.+|+++
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~-~~~~V~~vD~s~~~~~~a~~n~~~n~~~~  175 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVED  175 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTT
T ss_pred             CCCCCEEEEecccCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            467999999999999999999996 55 69999999999999999999998864

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.43  E-value=5.4e-07  Score=88.22  Aligned_cols=59  Identities=20%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+++.+++.++++|||+|||+|.++..+++. +.+|+++|+|+++++.|+++.+..+++
T Consensus        81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~  139 (248)
T 2yvl_A           81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLG  139 (248)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC
Confidence            46778888999999999999999999999997 899999999999999999999888774

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.42  E-value=4.4e-07  Score=96.88  Aligned_cols=82  Identities=20%  Similarity=0.282  Sum_probs=64.6

Q ss_pred             CCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          514 DESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       514 ~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      +-.+.++.+-|-....   ......++.+++.+++.++.+|||+|||+|.+++.+|++ +.+|+|+|+|+++++.|++++
T Consensus       253 g~~~~~~~~~f~q~n~---~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~  328 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNA---GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNA  328 (433)
T ss_dssp             TEEEECCSSSCCCSBH---HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECcccccccCH---HHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHH
Confidence            3344555554433221   223456677888888888899999999999999999996 889999999999999999999


Q ss_pred             HHcCCC
Q 036521          594 NEAGLQ  599 (602)
Q Consensus       594 ~~~gl~  599 (602)
                      +..|++
T Consensus       329 ~~~~~~  334 (433)
T 1uwv_A          329 RLNGLQ  334 (433)
T ss_dssp             HHTTCC
T ss_pred             HHcCCC
Confidence            988875

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.42  E-value=2.7e-07  Score=90.13  Aligned_cols=48  Identities=17%  Similarity=0.413  Sum_probs=42.1

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ..++.+|||||||+|.+++.+|++ .+++|+|||+|+.|++.|+++++.
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~   92 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRA   92 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH
Confidence            456779999999999999999987 468999999999999999998864

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.42  E-value=5.1e-07  Score=90.30  Aligned_cols=62  Identities=11%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..++.+++.+. .++.+|||||||+|.+++.++++ .+++|+|+|+|+++++.|+++++..|++
T Consensus        97 ~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~  159 (276)
T 2b3t_A           97 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK  159 (276)
T ss_dssp             HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            34456677765 67789999999999999999976 4789999999999999999999988865

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.42  E-value=1.6e-07  Score=92.45  Aligned_cols=60  Identities=8%  Similarity=0.014  Sum_probs=50.0

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ..++.+++.+...++.+|||+|||+|.+++.+++.   .+.+|+|+|+|+++++.|++++...
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            45556666665556789999999999999999985   3679999999999999999988765

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.42  E-value=4.8e-07  Score=87.44  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=49.9

Q ss_pred             HHHHHcc--CCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          541 LQIEKAR--VSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       541 ~l~~~l~--l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      .+++.+.  ++++++|||||||+|..+..+++..+  .+|+|+|+|+++++.|+++++..|+
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  127 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP  127 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Confidence            4555654  78899999999999999999998644  6999999999999999999987653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.41  E-value=1.4e-07  Score=93.46  Aligned_cols=50  Identities=18%  Similarity=0.166  Sum_probs=41.7

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ++.+.+..+  .+.+|||||||+|.++..++++ +.+|+|||+|++|++.|++
T Consensus        30 ~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~   79 (257)
T 4hg2_A           30 FRWLGEVAP--ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALR   79 (257)
T ss_dssp             HHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCC
T ss_pred             HHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhh
Confidence            345555543  4569999999999999999985 8999999999999998864

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.41  E-value=7.8e-07  Score=85.69  Aligned_cols=64  Identities=19%  Similarity=0.320  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          531 LKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       531 l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      +.+......+.+.+.+  +++.+|||||||+|.++..++++ +.+|+|+|+|+++++.|+++.+..+
T Consensus        21 ~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~   84 (227)
T 1ve3_A           21 YRSRIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE   84 (227)
T ss_dssp             HHHHHHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC
Confidence            3333344444555444  45889999999999999999996 6799999999999999999987765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.41  E-value=2.8e-07  Score=90.60  Aligned_cols=49  Identities=20%  Similarity=0.428  Sum_probs=44.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ++++.+|||||||+|.+++.+|+.. +++|+|||+|+.+++.|+++++..
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~   96 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIAL   96 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHH
Confidence            4578899999999999999999973 579999999999999999998775

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.41  E-value=3.3e-07  Score=89.07  Aligned_cols=44  Identities=23%  Similarity=0.438  Sum_probs=40.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .++.+|||||||+|.++..++++ +.+|+|+|+|++|++.|+++.
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~   82 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL   82 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC
Confidence            67789999999999999999996 569999999999999999874

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.41  E-value=1.1e-07  Score=92.63  Aligned_cols=56  Identities=18%  Similarity=0.303  Sum_probs=47.6

Q ss_pred             HHHHHHHHccCC-CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHH
Q 036521          538 KHSLQIEKARVS-KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       538 ~~~~l~~~l~l~-~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~  594 (602)
                      +++.+++.+.+. +|.+|||||||+|.++..++++ |+ +|+|||+|++|++.|+++..
T Consensus        24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~   81 (232)
T 3opn_A           24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDE   81 (232)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCT
T ss_pred             HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCc
Confidence            566777888765 4679999999999999999997 74 99999999999999887543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.40  E-value=5e-07  Score=93.32  Aligned_cols=59  Identities=22%  Similarity=0.343  Sum_probs=51.0

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+.+.+.+.++.+|||||||+|.++..+++. |+ +|+|||+|+ |++.|+++++..|+++
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~  113 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLED  113 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTT
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCC
Confidence            45556666788999999999999999999996 54 999999996 9999999999988753

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.40  E-value=5.4e-07  Score=87.12  Aligned_cols=58  Identities=10%  Similarity=0.310  Sum_probs=50.1

Q ss_pred             HHHHHHc--cCCCCCeEEEEecCchHHHHHHHhccC------CEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          540 SLQIEKA--RVSKGHGVLEIGCGWGTFAIEVVRQTG------CNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       540 ~~l~~~l--~l~~g~~vLDiGcG~G~~~~~la~~~g------~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ..+++.+  .++++++|||||||+|.++..+++..+      ++|+|+|+|+++++.|+++++..+
T Consensus        68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  133 (227)
T 2pbf_A           68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK  133 (227)
T ss_dssp             HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            3455555  578899999999999999999998644      599999999999999999998876

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.40  E-value=3.7e-07  Score=91.64  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcC-CHHHHHHHHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITL-SAEQLKYAEMKV  593 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~-S~~~l~~a~~~~  593 (602)
                      ...+.+.+...+.++.+|||||||+|.+++.+++. |+ +|+|+|+ |+++++.|++++
T Consensus        66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHH
Confidence            44455565555678899999999999999999985 66 9999999 899999999999

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.40  E-value=2.3e-07  Score=92.50  Aligned_cols=54  Identities=9%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +++|++|||+|||+|.+++.+|++..++|+++|+|+..++.++++++.+|++++
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~  176 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDR  176 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTT
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence            568999999999999999999997447999999999999999999999999864

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.39  E-value=1.9e-07  Score=90.90  Aligned_cols=56  Identities=18%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ..++..+.++++ +|||||||+|.++..+++ .+++|+|+|+|+++++.|++++...+
T Consensus        57 ~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~  112 (235)
T 3lcc_A           57 VHLVDTSSLPLG-RALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSP  112 (235)
T ss_dssp             HHHHHTTCSCCE-EEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSG
T ss_pred             HHHHHhcCCCCC-CEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccC
Confidence            345566666565 999999999999999998 48999999999999999999987643

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.39  E-value=3.6e-07  Score=88.43  Aligned_cols=51  Identities=31%  Similarity=0.696  Sum_probs=46.7

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++++.+|||||||+|.++..++++ +++|+|+|+|+++++.|++++...++.
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~   78 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLN   78 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCc
Confidence            458889999999999999999996 899999999999999999998877763

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.38  E-value=4.4e-07  Score=90.76  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=48.9

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHc-CC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEA-GL  598 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~-gl  598 (602)
                      ..+++.+.++++++|||+|||+|.++..+++.  .+++|+|+|+|+++++.|+++++.. |+
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~  161 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI  161 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            36678888999999999999999999999986  3789999999999999999999877 64

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.38  E-value=2e-07  Score=91.01  Aligned_cols=45  Identities=27%  Similarity=0.452  Sum_probs=41.5

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ++++.+|||||||+|.++..++++ +++|+|+|+|+++++.|+++.
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~   95 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG   95 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc
Confidence            357889999999999999999996 899999999999999999874

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.38  E-value=3.9e-07  Score=89.04  Aligned_cols=55  Identities=20%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             ccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          546 ARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+.++.+|||||||+|..+..+++..  +++|+|+|+|+++++.|+++++..|+.+
T Consensus        56 ~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~  112 (239)
T 2hnk_A           56 TKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLEN  112 (239)
T ss_dssp             HHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGG
T ss_pred             HHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            345578899999999999999999874  6899999999999999999999888754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.37  E-value=3.9e-07  Score=91.07  Aligned_cols=55  Identities=15%  Similarity=0.131  Sum_probs=49.3

Q ss_pred             ccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          546 ARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..++++++|||+|||+|.+++.+|++ .+++|+|+|+|+++++.|+++++.+|+++
T Consensus       115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~  170 (272)
T 3a27_A          115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN  170 (272)
T ss_dssp             TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSS
T ss_pred             HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Confidence            34678999999999999999999997 35699999999999999999999988754

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.37  E-value=2.9e-07  Score=95.73  Aligned_cols=52  Identities=27%  Similarity=0.367  Sum_probs=46.3

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +.+|++|||||||+|.+++.+|+. |+ +|+|||.|+ |++.|++.++.+|++++
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~~~~  133 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGLEDR  133 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCTTT
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCCCce
Confidence            347889999999999999999985 64 899999996 99999999999999864

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.36  E-value=3.5e-07  Score=90.18  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=49.8

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~  592 (602)
                      +....+++.+.+.++.+|||||||+|.++..++++ .+++|+|+|+|++|++.|+++
T Consensus        20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~   76 (259)
T 2p35_A           20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR   76 (259)
T ss_dssp             HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh
Confidence            34456788888889999999999999999999987 378999999999999999987

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.35  E-value=2.4e-07  Score=91.90  Aligned_cols=59  Identities=15%  Similarity=0.186  Sum_probs=51.1

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH---cCCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE---AGLQV  600 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~---~gl~~  600 (602)
                      +...+.++++.+|||||||+|.+++.++++. +++|+|||+|+++++.|+++++.   .++++
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~   90 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSA   90 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGG
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcc
Confidence            4455667788999999999999999999974 67999999999999999999987   77653

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.35  E-value=3.4e-07  Score=89.34  Aligned_cols=45  Identities=20%  Similarity=0.233  Sum_probs=41.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .++.+|||||||+|.++..++++ +.+|+|||+|+++++.|+++..
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~   85 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK   85 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhh
Confidence            46779999999999999999986 7899999999999999998864

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.35  E-value=1.7e-07  Score=93.11  Aligned_cols=49  Identities=12%  Similarity=0.154  Sum_probs=42.2

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHc
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +..+|++|||||||+|.++..++.. ++ +|+|+|+|+.|++.|+++++..
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~  101 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcC
Confidence            5668899999999999888877774 65 6999999999999999987654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.35  E-value=2.3e-07  Score=87.97  Aligned_cols=49  Identities=24%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ++++ +|||||||+|.++..+++. |++|+|+|+|+++++.|+++.+..++
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~   76 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV   76 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC
Confidence            3567 9999999999999999996 89999999999999999999987654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.34  E-value=5.3e-07  Score=94.33  Aligned_cols=98  Identities=29%  Similarity=0.335  Sum_probs=67.9

Q ss_pred             hhHhhhccchHHHHhhcCCC---CcccccccC-CCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc
Q 036521          497 NISYHYDLSNELFALFMDES---MTYSCPIFK-DEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT  572 (602)
Q Consensus       497 ~i~~~Yd~~~~~y~~~~~~~---~~ys~~~~~-~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~  572 (602)
                      ++.-++++.++.+..++|.+   ..+..+|-. .....+.+...   ..++..+ .+++.+|||+|||+|.+++.+|+. 
T Consensus       164 ~~~i~~~~~~d~~~~~ld~~g~~~l~~rgyr~~~~~a~l~~~la---~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~-  238 (373)
T 3tm4_A          164 AVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIA---NAMIELA-ELDGGSVLDPMCGSGTILIELALR-  238 (373)
T ss_dssp             SEEEEEEEETTEEEEEEESSCSSCTTCCTTCCSCCTTCCCHHHH---HHHHHHH-TCCSCCEEETTCTTCHHHHHHHHT-
T ss_pred             CeEEEEEEECCEEEEEEEccCCcccccCCcccccCCCCccHHHH---HHHHHhh-cCCCCEEEEccCcCcHHHHHHHHh-
Confidence            44456666677666666543   222233211 11223332222   2344555 678999999999999999999996 


Q ss_pred             CC--EEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          573 GC--NYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       573 g~--~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.  +|+|+|+|++|++.|+++++.+|++
T Consensus       239 ~~~~~v~g~Dis~~~l~~A~~n~~~~gl~  267 (373)
T 3tm4_A          239 RYSGEIIGIEKYRKHLIGAEMNALAAGVL  267 (373)
T ss_dssp             TCCSCEEEEESCHHHHHHHHHHHHHTTCG
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            54  9999999999999999999999984

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.34  E-value=1e-06  Score=86.77  Aligned_cols=58  Identities=22%  Similarity=0.227  Sum_probs=52.8

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHc-C
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEA-G  597 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~-g  597 (602)
                      ..+++.++++++++|||+|||+|.++..+++..  +++|+|+|+|+++++.|+++++.. |
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g  146 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ  146 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC
Confidence            467888899999999999999999999999872  689999999999999999999877 6

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.34  E-value=4.8e-07  Score=87.67  Aligned_cols=58  Identities=21%  Similarity=0.358  Sum_probs=49.6

Q ss_pred             HHHHHHc--cCCCCCeEEEEecCchHHHHHHHhccC-------CEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          540 SLQIEKA--RVSKGHGVLEIGCGWGTFAIEVVRQTG-------CNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       540 ~~l~~~l--~l~~g~~vLDiGcG~G~~~~~la~~~g-------~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ..+++.+  .++++++|||||||+|.++..+++..+       .+|+|+|+|+++++.|+++++..+
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  138 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD  138 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC
Confidence            3556666  478899999999999999999998644       599999999999999999987654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.34  E-value=1e-06  Score=88.20  Aligned_cols=59  Identities=22%  Similarity=0.286  Sum_probs=53.8

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..++..+++.++.+|||+|||+|.++..+++..  +++|+++|+|+++++.|+++++..|+
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  162 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL  162 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC
Confidence            467888899999999999999999999999872  68999999999999999999988876

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.34  E-value=4.3e-07  Score=94.16  Aligned_cols=57  Identities=25%  Similarity=0.342  Sum_probs=48.9

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+...+.++.+|||||||+|.++..+++. |+ +|+|||+| +|++.|+++++..|+++
T Consensus        58 i~~~~~~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~  115 (349)
T 3q7e_A           58 MFHNRHLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDH  115 (349)
T ss_dssp             HHTCHHHHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTT
T ss_pred             HHhccccCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCC
Confidence            333344568899999999999999999997 55 99999999 59999999999998875

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.33  E-value=2.5e-07  Score=92.69  Aligned_cols=54  Identities=15%  Similarity=0.165  Sum_probs=45.8

Q ss_pred             HHHHHHHHccCC-CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          538 KHSLQIEKARVS-KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       538 ~~~~l~~~l~l~-~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ++..+++.+++. +|.+|||||||+|.++..++++...+|+|||+|++|++.+.+
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            666778888875 578999999999999999999633499999999999998644

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.33  E-value=8.1e-07  Score=89.21  Aligned_cols=61  Identities=21%  Similarity=0.389  Sum_probs=50.8

Q ss_pred             HHHHHHHHc-cCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          538 KHSLQIEKA-RVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       538 ~~~~l~~~l-~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      .+..+++.+ .+.++.+|||||||+|.++..+++..  +++|+|+|+|+.|++.|++++...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~   72 (284)
T 3gu3_A            9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY   72 (284)
T ss_dssp             HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC
Confidence            334555554 56788999999999999999999873  58999999999999999999876553

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.33  E-value=6.7e-07  Score=89.48  Aligned_cols=52  Identities=19%  Similarity=0.371  Sum_probs=47.2

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .+++.+.+.++.+|||||||+|.++..+++ .+++|+|+|+|++|++.|+++.
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~   99 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY   99 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC
Confidence            456777788899999999999999999999 6899999999999999999875

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.33  E-value=5.7e-07  Score=85.94  Aligned_cols=52  Identities=17%  Similarity=0.147  Sum_probs=46.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .++.+|||||||+|..++.+++..  +++|+|+|+|+++++.|+++++..|+.+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  108 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLID  108 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGG
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCc
Confidence            356799999999999999999873  7899999999999999999999887643

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.32  E-value=3.3e-07  Score=93.09  Aligned_cols=56  Identities=21%  Similarity=0.315  Sum_probs=48.7

Q ss_pred             HccCCCCCeEEEEecCchHHHHHHH--hccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          545 KARVSKGHGVLEIGCGWGTFAIEVV--RQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       545 ~l~l~~g~~vLDiGcG~G~~~~~la--~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ...++++.+|||||||+|.++..+|  ...+++|+|+|+|+++++.|+++++..|+.+
T Consensus       113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  170 (305)
T 3ocj_A          113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG  170 (305)
T ss_dssp             HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGG
T ss_pred             HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            4456789999999999999999985  3367899999999999999999998887753

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.32  E-value=5e-07  Score=87.87  Aligned_cols=53  Identities=15%  Similarity=0.134  Sum_probs=46.6

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ++.+.++++++|||+|||+|.++..++++.  +.+|+|||+|++|++.+.++++.
T Consensus        70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~  124 (233)
T 2ipx_A           70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK  124 (233)
T ss_dssp             CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred             HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc
Confidence            446678899999999999999999999974  47999999999999888888876

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.31  E-value=8.1e-07  Score=91.26  Aligned_cols=58  Identities=24%  Similarity=0.445  Sum_probs=49.6

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+.+.+.+.++.+|||||||+|.++..+++. |+ +|+|+|+| +|++.|+++++..|+++
T Consensus        29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~   87 (328)
T 1g6q_1           29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSD   87 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTT
T ss_pred             HHHhhHhhcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCC
Confidence            4444555668899999999999999999996 54 99999999 69999999999988864

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.31  E-value=2.1e-07  Score=85.66  Aligned_cols=51  Identities=18%  Similarity=0.223  Sum_probs=46.1

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+++.++++++.+|||||||+|.++..++++ +.+|+|+|+|+++++.|+++
T Consensus         8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A            8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEF-ATKLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             TTHHHHHSSCCEEEEEETCTTCTTHHHHHTT-EEEEEEECSCHHHHHHHHHH
T ss_pred             HHHHhcCcCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEeCCHHHHHHHHHh
Confidence            4567778889999999999999999999997 45999999999999999987

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.30  E-value=4.1e-07  Score=89.72  Aligned_cols=55  Identities=18%  Similarity=0.111  Sum_probs=48.3

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCE--EEEEcCCHHHHHHHHHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN--YTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~--v~gid~S~~~l~~a~~~~~  594 (602)
                      ...+.+++.++++++++|||||||+|.++. +++  +.+  |+|||+|++|++.++++..
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~   64 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPF   64 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTT
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhc
Confidence            456678899999999999999999999999 754  567  9999999999999998764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.30  E-value=6.1e-07  Score=88.30  Aligned_cols=52  Identities=13%  Similarity=0.180  Sum_probs=46.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .++.+|||||||+|..++.+|+..  +++|++||+|+++++.|+++++.+|+.+
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~  131 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDH  131 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGG
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            456799999999999999999872  7899999999999999999999988753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.30  E-value=1.1e-06  Score=86.36  Aligned_cols=54  Identities=28%  Similarity=0.378  Sum_probs=47.4

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~  594 (602)
                      ..+++.+...++.+|||||||+|.++..++++ +. +|+|+|+|+++++.|++++.
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~   88 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTT   88 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCC
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhc
Confidence            35666777778899999999999999999997 65 99999999999999998864

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.30  E-value=2.6e-06  Score=91.02  Aligned_cols=124  Identities=7%  Similarity=-0.024  Sum_probs=84.2

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcC-CChhhH-HhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWS-CPSEGI-MSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNK  139 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~-~~~~~~-~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~  139 (602)
                      .+.+|+.+|+++++.++.+++.+..++  +++. .++.+. ....+..+..|....+   ..+...+....||+++++++
T Consensus       165 ~~~~s~~~~l~~~~~~~~l~~~l~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~s~~---~~g~~~~~~p~gG~~~l~~~  239 (433)
T 1d5t_A          165 PQNTSMRDVYRKFDLGQDVIDFTGHAL--ALYRTDDYLDQPCLETINRIKLYSESLA---RYGKSPYLYPLYGLGELPQG  239 (433)
T ss_dssp             TTTSBHHHHHHHTTCCHHHHHHHHHHT--SCCSSSGGGGSBSHHHHHHHHHHHHSCC---SSSCCSEEEETTCTTHHHHH
T ss_pred             cccCCHHHHHHHcCCCHHHHHHHHHHH--HhccCCCccCCCHHHHHHHHHHHHHHHH---hcCCCcEEEeCcCHHHHHHH
Confidence            467899999999988888776443221  1222 222221 1111122223333211   11234566788999999999


Q ss_pred             HHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHH
Q 036521          140 VIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPD  190 (602)
Q Consensus       140 la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~  190 (602)
                      |++.+.+.|++|+++++|++|..+++++.++..+|+++.||+||+|+++..
T Consensus       240 l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          240 FARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             HHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             HHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCc
Confidence            999988889999999999999988888764445677899999999997763

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.30  E-value=1.2e-06  Score=91.83  Aligned_cols=63  Identities=17%  Similarity=0.347  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHcc--CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKAR--VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~--l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...++.+.+.+.  ..++.+|||+|||+|.+++.++++ +++|+|||+|+.+++.|+++++..+++
T Consensus       217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~~  281 (381)
T 3dmg_A          217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANALK  281 (381)
T ss_dssp             HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            344455555442  346789999999999999999996 899999999999999999999988764

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.29  E-value=2.8e-07  Score=91.29  Aligned_cols=57  Identities=11%  Similarity=0.113  Sum_probs=48.4

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCH-------HHHHHHHHHHHHcCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSA-------EQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~-------~~l~~a~~~~~~~gl~  599 (602)
                      +.+.+.+.++.+|||+|||+|.+++.+|++ |++|+|+|+|+       ++++.|+++++.+++.
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~  138 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA  138 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc
Confidence            344445667889999999999999999996 89999999999       9999999988766553

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.29  E-value=1.1e-06  Score=85.05  Aligned_cols=53  Identities=11%  Similarity=0.064  Sum_probs=47.5

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.++.+|||||||+|..++.+++..  +++|+++|+|+++++.|+++++.+|+.+
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~  121 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEH  121 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTT
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC
Confidence            4567899999999999999999862  6899999999999999999999988753

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.29  E-value=1.4e-06  Score=82.56  Aligned_cols=47  Identities=19%  Similarity=0.310  Sum_probs=42.2

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHH
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~  594 (602)
                      +..++.+|||+|||+|.++..+++. ++ +|+|||+|+++++.|+++++
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~   95 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG   95 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC
Confidence            5667889999999999999999986 65 79999999999999999864

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.29  E-value=1.8e-06  Score=90.17  Aligned_cols=62  Identities=15%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..++..+++.+..+ +.+|||+|||+|.+++.+|+. ..+|+|||+|+++++.|+++++.+|++
T Consensus       200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~  261 (369)
T 3bt7_A          200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID  261 (369)
T ss_dssp             HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            45667778887765 578999999999999999984 779999999999999999999998874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.29  E-value=1.5e-06  Score=86.88  Aligned_cols=58  Identities=19%  Similarity=0.307  Sum_probs=52.5

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ...+++.++++++.+|||+|||+|.++..+++.  .+.+|+|+|+|+++++.|+++++..
T Consensus        88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  147 (280)
T 1i9g_A           88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC  147 (280)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            346788889999999999999999999999986  3689999999999999999999876

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.29  E-value=5.1e-07  Score=87.35  Aligned_cols=54  Identities=26%  Similarity=0.266  Sum_probs=46.7

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ++.+.++++++|||+|||+|.++..++++.  +.+|+|+|+|++|++.++++++..
T Consensus        66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~  121 (227)
T 1g8a_A           66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER  121 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC
T ss_pred             HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc
Confidence            445558899999999999999999999874  479999999999999999988643

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.29  E-value=1e-06  Score=91.49  Aligned_cols=61  Identities=23%  Similarity=0.202  Sum_probs=54.4

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...++..++.+++.+|||+|||+|.+++.+|...  +++|+|+|+|++|++.|+++++.+|++
T Consensus       192 a~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~  254 (354)
T 3tma_A          192 AQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS  254 (354)
T ss_dssp             HHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC
Confidence            3456777888899999999999999999999963  389999999999999999999999975

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.28  E-value=9.7e-07  Score=90.13  Aligned_cols=59  Identities=8%  Similarity=0.080  Sum_probs=52.4

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+++++|++|||+|||+|+.+..+|+..  +++|+|+|+|+.+++.++++++..|+.
T Consensus       109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~  169 (315)
T 1ixk_A          109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL  169 (315)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC
Confidence            34566788999999999999999999999863  479999999999999999999998874

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.28  E-value=1e-06  Score=85.52  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             HccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          545 KARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       545 ~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+.+++|++|||+|||+|..+.++|+.  ...+|+|+|+|+.|++...+.+++
T Consensus        71 ~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~  123 (232)
T 3id6_C           71 TNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR  123 (232)
T ss_dssp             CCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh
Confidence            345899999999999999999999986  356999999999998666555543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.28  E-value=9.7e-07  Score=90.97  Aligned_cols=58  Identities=16%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHc
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ...+++.+.+.+|++|||||||+|.++..+++..|  .+|+|+|+|+++++.|+++++..
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~  153 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW  153 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHh
Confidence            34567778899999999999999999999998644  89999999999999999999863

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.28  E-value=5e-07  Score=91.24  Aligned_cols=49  Identities=16%  Similarity=0.410  Sum_probs=41.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ++.+|||||||+|.+++.+++++ +++|+|||+|+.|++.|+++++..++
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~   95 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLS   95 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhh
Confidence            68899999999999999999974 68999999999999999998876553

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.27  E-value=2.5e-07  Score=90.76  Aligned_cols=53  Identities=19%  Similarity=0.105  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..++.+|||||||+|..++.+|+.  .+++|+|||+|+++++.|+++++.+|+++
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~  112 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEH  112 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTT
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            345679999999999999999986  26899999999999999999999999864

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.27  E-value=1.2e-06  Score=87.67  Aligned_cols=58  Identities=10%  Similarity=0.102  Sum_probs=51.4

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g-~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +...+++++|++|||+|||+|+.+..+++. .+ .+|+|+|+|+++++.++++++..|+.
T Consensus        75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~  134 (274)
T 3ajd_A           75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL  134 (274)
T ss_dssp             HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC
Confidence            345567889999999999999999999985 34 79999999999999999999998875

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.27  E-value=8.5e-07  Score=84.58  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=40.6

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~  593 (602)
                      .+++.+.. ++.+|||||||+|.++..+    ++ +|+|+|+|++|++.|+++.
T Consensus        28 ~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~   76 (211)
T 2gs9_A           28 RALKGLLP-PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA   76 (211)
T ss_dssp             HHHHTTCC-CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC
T ss_pred             HHHHHhcC-CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC
Confidence            44555543 7889999999999999877    56 9999999999999999875

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.27  E-value=1.6e-06  Score=92.07  Aligned_cols=59  Identities=22%  Similarity=0.338  Sum_probs=50.6

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ++++.+++   +.++.+|||+|||+|.+++.+|++ +.+|+|||+|+++++.|+++++.+|++
T Consensus       280 ~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~  338 (425)
T 2jjq_A          280 NLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD  338 (425)
T ss_dssp             HHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc
Confidence            34444554   567889999999999999999996 889999999999999999999988764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.26  E-value=1.2e-06  Score=90.03  Aligned_cols=62  Identities=19%  Similarity=0.268  Sum_probs=53.5

Q ss_pred             HHHHHHHHccC--CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          538 KHSLQIEKARV--SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       538 ~~~~l~~~l~l--~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ....+++.++.  +++.+|||||||+|.++..++++ .+.+++|+|+| ++++.|++++.+.|+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~  215 (335)
T 2r3s_A          151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVAS  215 (335)
T ss_dssp             HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGG
T ss_pred             hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCc
Confidence            34466777777  78899999999999999999987 47899999999 99999999998887653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.26  E-value=1.2e-06  Score=97.81  Aligned_cols=60  Identities=17%  Similarity=0.329  Sum_probs=50.3

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC--CEEEEEcCCHHHHHHHHHHHHHc
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG--CNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g--~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ..++.+++.+...++.+|||||||+|.++..++++.+  .+|+|||+|++|++.|+++++..
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~  769 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK  769 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhc
Confidence            3445566666666889999999999999999999732  79999999999999999987643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.25  E-value=1.1e-06  Score=85.44  Aligned_cols=52  Identities=21%  Similarity=0.167  Sum_probs=46.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .++.+|||||||+|..++.+++..  +++|+++|+|+++++.|+++++.+|+.+
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~  124 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAE  124 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGG
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            457799999999999999999873  6899999999999999999999888753

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.25  E-value=1.4e-06  Score=84.88  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=47.1

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+.+.+...++.+|||||||+|.++..++++ +. +|+|+|+|+++++.|+++...
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~   88 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD   88 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc
Confidence            4566667778899999999999999999996 77 999999999999999987643

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.25  E-value=4.1e-07  Score=89.94  Aligned_cols=49  Identities=12%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHc
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +..++.+|||||||+|.++..+++. +. +|+|+|+|+.|++.|+++++..
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~  102 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKE  102 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred             cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcC
Confidence            5567889999999999999999985 66 9999999999999999988654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.24  E-value=9.5e-07  Score=86.39  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=41.8

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ++++.+|||||||+|.++..++++ +.+|+|||+|++|++.|+++.
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~   98 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKEN   98 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhC
Confidence            568889999999999999999996 669999999999999999986

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.24  E-value=7.7e-07  Score=82.20  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=35.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKY  588 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~  588 (602)
                      .++.+|||+|||+|.++..++++ + +|+|+|+|++|++.
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~   59 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES   59 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT
T ss_pred             CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc
Confidence            46779999999999999999996 6 99999999999987

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.24  E-value=1.3e-06  Score=85.32  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=47.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-T-GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~-g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .++.+|||||||+|..++.+|+. . +++|+++|+|+++++.|+++++++|+.+
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~  122 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEH  122 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGG
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            45679999999999999999986 2 7899999999999999999999998854

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.23  E-value=5.2e-08  Score=95.89  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=50.9

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +..+.+++.++++++++|||||||+|.++..++++ +++|+|||+|++|++.|+++++
T Consensus        16 ~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~   72 (245)
T 1yub_A           16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK   72 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc
Confidence            34567889999999999999999999999999996 7999999999999999987764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.23  E-value=7.7e-07  Score=92.04  Aligned_cols=60  Identities=20%  Similarity=0.367  Sum_probs=52.0

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.+++.+...++.+|||+|||+|.++..++++ .+++|+|+|+|+.+++.|+++++..++.
T Consensus       186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~  246 (343)
T 2pjd_A          186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE  246 (343)
T ss_dssp             HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            35677776667789999999999999999987 3479999999999999999999988765

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.22  E-value=1.3e-05  Score=86.03  Aligned_cols=119  Identities=12%  Similarity=0.068  Sum_probs=80.0

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHH----HHHHHHhcCccccCCCCcEEEecCCcHhHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFS----ILSFYRNHHLLQLFGRPQWLTVRSRSHSYV  137 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~----~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~  137 (602)
                      .+.+|+.+|++++++++.+.+.++.++.  ++..+  +..+.|+..    +..|...-+   ..+...+.-..||+++++
T Consensus       187 l~~~s~~e~l~~~gls~~l~~fl~~ala--L~~~~--~~~~~~a~~~l~ri~~y~~Sl~---~yg~s~~~yp~gG~~~L~  259 (475)
T 3p1w_A          187 PYKLTMLEIYKHFNLCQLTIDFLGHAVA--LYLND--DYLKQPAYLTLERIKLYMQSIS---AFGKSPFIYPLYGLGGIP  259 (475)
T ss_dssp             TTTSBHHHHHHHTTCCHHHHHHHHHHTS--CCSSS--GGGGSBHHHHHHHHHHHHHHHH---HHSSCSEEEETTCTTHHH
T ss_pred             ccCCCHHHHHHHcCCCHHHHHHHHHHHH--hhcCC--CcccCCHHHHHHHHHHHHHHHh---hcCCCceEEECCCHHHHH
Confidence            3578999999999999998876544443  22211  111112222    222321100   012234455789999999


Q ss_pred             HHHHHHHhcCCCeEEeCCceeEEEe-cCCe-EEEEeCCCcEEecCEEEEecC
Q 036521          138 NKVIALLESLGCQIKTGCEVCSVLQ-YDEG-RTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       138 ~~la~~l~~~g~~v~l~t~V~~i~~-~~~g-v~v~~~~g~~~~ad~VI~A~p  187 (602)
                      +++++.+.++|++|+++++|++|.. .+++ +.|.+.+|+++.||+||+++.
T Consensus       260 ~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~  311 (475)
T 3p1w_A          260 EGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPS  311 (475)
T ss_dssp             HHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGG
T ss_pred             HHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCC
Confidence            9999999999999999999999998 4444 467788888899999999973

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.21  E-value=1.6e-06  Score=88.39  Aligned_cols=48  Identities=15%  Similarity=0.262  Sum_probs=42.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +++.+|||||||+|.++..+++..+.+|+|+|+|++|++.|+++....
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~   80 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDM   80 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            477899999999999999999865789999999999999999998754

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.21  E-value=1.7e-06  Score=82.17  Aligned_cols=49  Identities=31%  Similarity=0.289  Sum_probs=41.6

Q ss_pred             CCCCCeEEEEecCchHHHH-HHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          548 VSKGHGVLEIGCGWGTFAI-EVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~-~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ..++.+|||||||+|.++. .+++ .+++|+|+|+|++|++.|+++++..+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~   70 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENN   70 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            4578899999999999844 4444 68999999999999999999987765

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.21  E-value=2.2e-06  Score=80.14  Aligned_cols=51  Identities=25%  Similarity=0.490  Sum_probs=44.7

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +++.+ ++++.+|||||||+|.++..+++. +++|+|+|+|+++++.|+++..
T Consensus        39 ~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~   89 (195)
T 3cgg_A           39 LIDAM-APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFP   89 (195)
T ss_dssp             HHHHH-SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT
T ss_pred             HHHHh-ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCC
Confidence            44444 568899999999999999999996 8999999999999999998753

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.18  E-value=2.1e-06  Score=90.18  Aligned_cols=51  Identities=16%  Similarity=0.216  Sum_probs=47.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+|++|||+|||+|.+++.+|+. |+ +|+|||+|+++++.|+++++.+|+++
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~  262 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDM  262 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            57889999999999999999985 65 89999999999999999999999863

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.18  E-value=2.8e-06  Score=84.85  Aligned_cols=63  Identities=6%  Similarity=-0.010  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHccC-CCCCeEEEEecCc---hHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521          532 KVAQMRKHSLQIEKARV-SKGHGVLEIGCGW---GTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       532 ~~aq~~~~~~l~~~l~l-~~g~~vLDiGcG~---G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ..+++..++.+++.+.. ....+|||||||+   |.++..+++. .+++|+|||+|++|++.|++++.
T Consensus        58 a~~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~  125 (274)
T 2qe6_A           58 AIENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA  125 (274)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC
Confidence            34556666667766653 3447999999999   9988776664 57899999999999999999874

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.17  E-value=4.3e-06  Score=79.56  Aligned_cols=47  Identities=19%  Similarity=0.317  Sum_probs=42.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ++++.+|||||||+|.++..++++ +. +|+|+|+|+.+++.|+++...
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~   87 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAH   87 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTT
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhccc
Confidence            468889999999999999999996 54 899999999999999998753

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.17  E-value=3.3e-06  Score=89.05  Aligned_cols=50  Identities=22%  Similarity=0.181  Sum_probs=45.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      .+|++|||+|||+|.+++.+|+....+|+|||+|+++++.|+++++.+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl  268 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL  268 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            47889999999999999999996234999999999999999999999887

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.16  E-value=1.7e-06  Score=90.71  Aligned_cols=67  Identities=15%  Similarity=0.060  Sum_probs=52.2

Q ss_pred             cHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc--CC
Q 036521          530 DLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA--GL  598 (602)
Q Consensus       530 ~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~--gl  598 (602)
                      .++++....+..... ..+++|.+|||+|||+|..++.+|+. +.+|+|||+|+++++.|+++++..  |+
T Consensus        74 ~~eQat~e~vA~~~a-~~l~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl  142 (410)
T 3ll7_A           74 SLEQSSGAVTSSYKS-RFIREGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG  142 (410)
T ss_dssp             HHHHSCCHHHHHHGG-GGSCTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT
T ss_pred             ChhhcCHHHHHHHHH-HhcCCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC
Confidence            455544333332221 22446899999999999999999985 889999999999999999999987  76

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.15  E-value=3.2e-06  Score=87.91  Aligned_cols=61  Identities=16%  Similarity=0.326  Sum_probs=54.3

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ...+++.++.+++.+|||||||+|.++..++++ .+.+|+|+|+ +++++.|++++++.++.+
T Consensus       179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~  240 (359)
T 1x19_A          179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVAD  240 (359)
T ss_dssp             HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTT
T ss_pred             HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCC
Confidence            346778888888899999999999999999987 4789999999 999999999999888764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.15  E-value=3.5e-06  Score=88.01  Aligned_cols=59  Identities=22%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+++.++++++.+|||||||+|.++..++++ .+++++++|+ +++++.|++++...|+.+
T Consensus       173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~  232 (374)
T 1qzz_A          173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLAD  232 (374)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCC
Confidence            5677778888999999999999999999987 4789999999 999999999999888753

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.13  E-value=2.4e-06  Score=86.12  Aligned_cols=55  Identities=24%  Similarity=0.275  Sum_probs=40.9

Q ss_pred             HHHHcc-CCCCCeEEEEecCchHHHHHH----Hhc-cCCEE--EEEcCCHHHHHHHHHHHHHc
Q 036521          542 QIEKAR-VSKGHGVLEIGCGWGTFAIEV----VRQ-TGCNY--TGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       542 l~~~l~-l~~g~~vLDiGcG~G~~~~~l----a~~-~g~~v--~gid~S~~~l~~a~~~~~~~  596 (602)
                      ++..++ .+++.+|||||||+|.++..+    +.+ .+++|  +|||+|++|++.|++++...
T Consensus        43 ~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~  105 (292)
T 2aot_A           43 IIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT  105 (292)
T ss_dssp             HSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC
T ss_pred             HHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc
Confidence            333344 357789999999999876543    332 35654  99999999999999998754

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.13  E-value=5.4e-06  Score=87.09  Aligned_cols=223  Identities=8%  Similarity=0.085  Sum_probs=132.7

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCC----CCcE-EEecCCcHhH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFG----RPQW-LTVRSRSHSY  136 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~----~~~~-~~~~gG~~~l  136 (602)
                      .+++|+++|+.+ .+++++.+.++.|++.++|+++++++.   +.++ .   .-......+    ...+ ..++||.+++
T Consensus       154 ~~~~s~~e~~~~-~~G~~~~e~~~~py~~k~~~~~~~~Ls---a~~~-~---Rvp~~~~~d~~yf~~~~qg~P~gGy~~l  225 (397)
T 3hdq_A          154 EQVRTSEDVVVS-KVGRDLYNKFFRGYTRKQWGLDPSELD---ASVT-A---RVPTRTNRDNRYFADTYQAMPLHGYTRM  225 (397)
T ss_dssp             SSCCBHHHHHHH-HHHHHHHHHHTHHHHHHHHSSCGGGSB---TTTG-G---GSCCCSSCCCBSCCCSEEEEETTCHHHH
T ss_pred             CCCcCHHHHHHH-hcCHHHHHHHHHHHhCchhCCCHHHHH---HHHH-H---hcCcccccCccchhhhheeccCCCHHHH
Confidence            467999999998 489999999999999999999998873   2211 1   111111111    1233 2478999999


Q ss_pred             HHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCCCCHHHHhhccCcccccee
Q 036521          137 VNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSD  216 (602)
Q Consensus       137 ~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~~~~~~~~~l~~~~y~~~~  216 (602)
                      +++|++..   |.+|+++++|.++             +..+.+|+||+|+|.+.....           .++.++|.+..
T Consensus       226 ~e~l~~~~---g~~V~l~~~v~~~-------------~~~~~~d~vI~T~P~d~~~~~-----------~~g~L~yrsl~  278 (397)
T 3hdq_A          226 FQNMLSSP---NIKVMLNTDYREI-------------ADFIPFQHMIYTGPVDAFFDF-----------CYGKLPYRSLE  278 (397)
T ss_dssp             HHHHTCST---TEEEEESCCGGGT-------------TTTSCEEEEEECSCHHHHTTT-----------TTCCCCEEEEE
T ss_pred             HHHHHhcc---CCEEEECCeEEec-------------cccccCCEEEEcCCHHHHHHH-----------hcCCCCCceEE
Confidence            99998765   8899999999832             334579999999998776321           36788888765


Q ss_pred             EE-EecCCCCCCCCCCcccccccccCCCCCeEEEEeccccccCCCCCCCCCeEEEcCCCCCCcceEEEEE--ccC---CC
Q 036521          217 IF-LHRDKNFMPRNPAAWSAWNFLGGLDGKACLTYWLNVLQNIGDGETGLPFLVTLNPDHTPNNTLLKWS--TGH---PV  290 (602)
Q Consensus       217 ~v-l~~d~~l~p~~~~~w~s~n~~~~~~~~~~~t~~~~~~~~l~~~~~~~~v~~tl~p~~~p~~~l~r~~--~~~---p~  290 (602)
                      ++ +..+..-..  ...|  .||.... ....++.+-+- ...+.  . ..++            ...+.  -.-   |+
T Consensus       279 ~~~~~~~~~~~~--~~~~--vn~~d~~-p~tRi~e~k~~-~~~~~--~-~t~i------------~~Ey~~~~~~pyYpv  337 (397)
T 3hdq_A          279 FRHETHDTEQLL--PTGT--VNYPNDY-AYTRVSEFKHI-TGQRH--H-QTSV------------VYEYPRAEGDPYYPV  337 (397)
T ss_dssp             EEEEEESSSCSC--SSSE--EECSSSS-SCSEEEEHHHH-HCCCC--S-SEEE------------EEEEEESSSSCCEEC
T ss_pred             EEEEEeccccCC--CCeE--EEeCCCC-cceEEEeeccc-CCCCC--C-CEEE------------EEEECCCCCcccccc
Confidence            44 344532111  1223  2332222 22233322111 00000  0 1111            11111  112   33


Q ss_pred             CChhHHHHHHHHHhh-cCCCCeEEecccc--CCCCChhHHHHHHHHHHHhcCC
Q 036521          291 PSVAASKASLELDHI-QGKRGIWFCEAYQ--GYGFHEDGLKAGMIAAHGVLGK  340 (602)
Q Consensus       291 ~~~~~~~~~~~l~~l-qg~~gl~~aG~~~--g~g~~E~av~SG~~aA~~ll~~  340 (602)
                      ++.......++-..+ +..++++++|=+-  .+--+..++.+|+.+|+.++..
T Consensus       338 ~~~~~~~~~~~y~~~a~~~~~v~~~GRlg~y~Y~~md~~i~~al~~~~~~~~~  390 (397)
T 3hdq_A          338 PRPENAELYKKYEALADAAQDVTFVGRLATYRYYNMDQVVAQALATFRRLQGQ  390 (397)
T ss_dssp             CSHHHHHHHHHHHHHHHHCTTEEECSTTTTTCCCCHHHHHHHHHHHHHHHHC-
T ss_pred             CchhHHHHHHHHHHHHhcCCCEEEcccceEEEeccHHHHHHHHHHHHHHHhcc
Confidence            444444333333333 4578999999863  3333889999999999998764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.13  E-value=2.3e-06  Score=84.69  Aligned_cols=90  Identities=11%  Similarity=0.087  Sum_probs=61.4

Q ss_pred             chHHHHhhcCCCCccccc---------ccCCCCccHHHHHHHHHHHHHHHccCCCC-CeEEEEecCc--hHHHHHHHhc-
Q 036521          505 SNELFALFMDESMTYSCP---------IFKDEDEDLKVAQMRKHSLQIEKARVSKG-HGVLEIGCGW--GTFAIEVVRQ-  571 (602)
Q Consensus       505 ~~~~y~~~~~~~~~ys~~---------~~~~~~~~l~~aq~~~~~~l~~~l~l~~g-~~vLDiGcG~--G~~~~~la~~-  571 (602)
                      ....|++|++...+|-..         .+. .-.....+.+..+...++.+....| .+|||||||.  ++....++++ 
T Consensus        24 ~aR~yd~~LgGk~n~~~Dr~~~~~~~~~~P-~~~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~  102 (277)
T 3giw_A           24 SARIYDYIIGGKDYYPADKEAGDAMSREWP-ALPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSV  102 (277)
T ss_dssp             HHHHHHHHTTCSCCCHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHH
T ss_pred             cchhheeecCCccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHH
Confidence            346777888877665320         011 1124445566777777777753334 6899999997  4444555554 


Q ss_pred             -cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          572 -TGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       572 -~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                       .+++|++||.|+.|++.|+++...
T Consensus       103 ~P~arVv~VD~sp~mLa~Ar~~l~~  127 (277)
T 3giw_A          103 APESRVVYVDNDPIVLTLSQGLLAS  127 (277)
T ss_dssp             CTTCEEEEEECCHHHHHTTHHHHCC
T ss_pred             CCCCEEEEEeCChHHHHHHHHHhcc
Confidence             689999999999999999998854

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.11  E-value=8.1e-06  Score=85.16  Aligned_cols=62  Identities=18%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ....+++.++.+++.+|||||||+|.++..++++ .+.+++++|+ +++++.|++++.+.++.+
T Consensus       190 ~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~  252 (369)
T 3gwz_A          190 EAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLAD  252 (369)
T ss_dssp             HHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTT
T ss_pred             hHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCC
Confidence            3456778888888899999999999999999987 5789999999 999999999999888754

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.11  E-value=1.3e-06  Score=85.05  Aligned_cols=51  Identities=10%  Similarity=0.259  Sum_probs=45.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +-.+|||||||||-+++.++.. ..++|+++|+++.|++.+++++...|+..
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~  183 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPH  183 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCE
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence            3459999999999999999887 57899999999999999999999988763

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.09  E-value=5.2e-06  Score=87.55  Aligned_cols=50  Identities=26%  Similarity=0.351  Sum_probs=46.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +++++|||+|||+|.+++.+|+. |+ +|+|+|+|+++++.|+++++.+|++
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~  266 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVE  266 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCG
T ss_pred             hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999996 65 9999999999999999999998875

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.09  E-value=2.8e-06  Score=89.13  Aligned_cols=50  Identities=26%  Similarity=0.262  Sum_probs=46.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++++|||+|||+|.+++.+|+. +.+|+|+|+|+++++.|+++++.+|+++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~  258 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN  258 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            7889999999999999999997 7899999999999999999999988753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.08  E-value=4.7e-06  Score=88.98  Aligned_cols=59  Identities=10%  Similarity=0.017  Sum_probs=52.0

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+.+++|++|||+|||+|+.+.++|+..  +.+|+++|+|+++++.++++++..|+.
T Consensus        92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~  152 (464)
T 3m6w_A           92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP  152 (464)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe
Confidence            34556678899999999999999999999863  369999999999999999999998874

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.08  E-value=3e-06  Score=81.47  Aligned_cols=51  Identities=24%  Similarity=0.404  Sum_probs=44.6

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .+++.+. .++.+|||||||+|.++..++++ +.+|+|+|+|+++++.++++.
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~   74 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL   74 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC
Confidence            4555555 67889999999999999999997 899999999999999998764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.08  E-value=2.6e-06  Score=80.28  Aligned_cols=46  Identities=26%  Similarity=0.367  Sum_probs=39.7

Q ss_pred             HHHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHH
Q 036521          538 KHSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAE  584 (602)
Q Consensus       538 ~~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~  584 (602)
                      |+..+.++.. +++|++|||+|||+|.++..++++ +++|+|||+|+.
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~   58 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEM   58 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCC
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccc
Confidence            5556677765 478999999999999999999997 899999999974

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.05  E-value=6.4e-06  Score=86.50  Aligned_cols=63  Identities=22%  Similarity=0.221  Sum_probs=54.1

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cC--------------------------------------CEEEE
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TG--------------------------------------CNYTG  578 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g--------------------------------------~~v~g  578 (602)
                      ....++...+.+++..|||.+||+|.+++.+|.. .+                                      .+|+|
T Consensus       189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            3345677888889999999999999999999875 12                                      45999


Q ss_pred             EcCCHHHHHHHHHHHHHcCCCC
Q 036521          579 ITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       579 id~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|+|++|++.|+++++.+|+++
T Consensus       269 vDid~~al~~Ar~Na~~~gl~~  290 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLGD  290 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTT
T ss_pred             EECCHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.05  E-value=5.8e-06  Score=85.85  Aligned_cols=59  Identities=22%  Similarity=0.293  Sum_probs=52.7

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+++.++++++.+|||||||+|.++..++++ .+++++++|+ +++++.|+++++..|+.+
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~  233 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSD  233 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTT
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCC
Confidence            5677888888999999999999999999987 4689999999 999999999999888753

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.04  E-value=5.2e-06  Score=85.24  Aligned_cols=59  Identities=17%  Similarity=0.113  Sum_probs=51.4

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+++.++.+++.+|||||||+|.++..++++ .+.+++++|+ +++++.|++++.+.++.+
T Consensus       160 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~  219 (332)
T 3i53_A          160 GIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSG  219 (332)
T ss_dssp             TGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCc
Confidence            4556666677789999999999999999987 5789999999 999999999999888754

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.04  E-value=6.4e-06  Score=87.85  Aligned_cols=59  Identities=14%  Similarity=0.114  Sum_probs=52.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+.+++|++|||+|||+|+.+.++|+..  +.+|+++|+|+++++.++++++..|++
T Consensus        96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~  156 (456)
T 3m4x_A           96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS  156 (456)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            34556778999999999999999999999862  369999999999999999999999886

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.04  E-value=7.3e-06  Score=83.17  Aligned_cols=58  Identities=14%  Similarity=0.101  Sum_probs=51.9

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +...+.+++|++|||+|||.|+.+.++|+..  ..+|+++|+|+++++.++++++..|+.
T Consensus        94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~  153 (309)
T 2b9e_A           94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS  153 (309)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            4556688999999999999999999999862  479999999999999999999999875

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.03  E-value=4.6e-06  Score=85.91  Aligned_cols=51  Identities=18%  Similarity=0.290  Sum_probs=46.5

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +++|.+|||+|||+|.+++. |+ .+++|+|+|+|+++++.|+++++.+|+++
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~  243 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEH  243 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             cCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            35789999999999999999 88 47899999999999999999999998853

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.03  E-value=5.3e-06  Score=86.97  Aligned_cols=63  Identities=21%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cC--------------------------------------CEEEE
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TG--------------------------------------CNYTG  578 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g--------------------------------------~~v~g  578 (602)
                      ....++...+.+++.+|||.+||+|.+++.+|.. .+                                      .+|+|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            3345677788889999999999999999999875 11                                      57999


Q ss_pred             EcCCHHHHHHHHHHHHHcCCCC
Q 036521          579 ITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       579 id~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|+|+++++.|+++++.+|+++
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~  284 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDE  284 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGG
T ss_pred             EECCHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999863

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.03  E-value=8.3e-06  Score=80.86  Aligned_cols=45  Identities=27%  Similarity=0.436  Sum_probs=41.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      +++.+|||||||+|.++..+++. .+++|+|+|+|+++++.|+++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~  129 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY  129 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC
Confidence            57889999999999999999997 3789999999999999998874

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.01  E-value=1.2e-05  Score=90.83  Aligned_cols=49  Identities=24%  Similarity=0.317  Sum_probs=45.8

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +|.+|||+|||+|.+++.+|+. |+ +|++||+|+.+++.|+++++.+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~  588 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLT  588 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            6889999999999999999985 65 6999999999999999999999987

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.01  E-value=9.1e-06  Score=84.99  Aligned_cols=61  Identities=21%  Similarity=0.315  Sum_probs=53.3

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cC--------------------------------------CEEEEEc
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TG--------------------------------------CNYTGIT  580 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g--------------------------------------~~v~gid  580 (602)
                      ..++...+.+++..|||.+||+|.+++.+|.. .+                                      .+|+|+|
T Consensus       184 aall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvD  263 (384)
T 3ldg_A          184 AAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFD  263 (384)
T ss_dssp             HHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred             HHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence            45677788889999999999999999999875 12                                      4599999


Q ss_pred             CCHHHHHHHHHHHHHcCCCC
Q 036521          581 LSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       581 ~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +|++|++.|+++++.+|+++
T Consensus       264 id~~al~~Ar~Na~~~gl~~  283 (384)
T 3ldg_A          264 FDGRMVEIARKNAREVGLED  283 (384)
T ss_dssp             SCHHHHHHHHHHHHHTTCTT
T ss_pred             CCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999875

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.00  E-value=6.5e-06  Score=88.65  Aligned_cols=58  Identities=10%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             HHHHccCC--CCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          542 QIEKARVS--KGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       542 l~~~l~l~--~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +...+.++  +|++|||+|||+|+.+.++|+..  +.+|+++|+|+++++.++++++..|+.
T Consensus       107 ~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~  168 (479)
T 2frx_A          107 PVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS  168 (479)
T ss_dssp             HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            34456666  99999999999999999999873  479999999999999999999998875

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.00  E-value=1e-05  Score=84.25  Aligned_cols=112  Identities=15%  Similarity=0.123  Sum_probs=72.6

Q ss_pred             CCCCCHHHHHH-hcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHH
Q 036521           62 DRDETLGQFIK-SRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKV  140 (602)
Q Consensus        62 ~~~~s~~~~l~-~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~l  140 (602)
                      +|.+|+++||+ +.++++.+++.+- .+    ++.  +.....+++.++.+   .  .......+++++.||+++|+++|
T Consensus       259 lD~~S~~~~L~~~~g~s~~~~~~~~-~~----~~~--~~~~~~s~l~~l~~---~--~~~~~~~~~~~i~GG~~~l~~~l  326 (376)
T 2e1m_A          259 FDGYSMGRFLREYAEFSDEAVEAIG-TI----ENM--TSRLHLAFFHSFLG---R--SDIDPRATYWEIEGGSRMLPETL  326 (376)
T ss_dssp             HTTCBHHHHHHHTSCCCHHHHHHHH-HH----TTC--TTTTTSBHHHHHHH---C--SCSCTTCCEEEETTCTTHHHHHH
T ss_pred             HhCCCHHHHHhhccCCCHHHHHHHH-hh----cCc--cccchhhHHHHHHH---h--hhhccCCceEEECCcHHHHHHHH
Confidence            47899999998 8899999887542 12    222  22223454444432   2  11234578999999999999999


Q ss_pred             HHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          141 IALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       141 a~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ++.|   +++|+++++|++|++.++|+.|...+.....--+|.++|-|
T Consensus       327 ~~~l---~~~i~l~~~V~~I~~~~~gv~v~~~~~~~~~g~~~~~~~~~  371 (376)
T 2e1m_A          327 AKDL---RDQIVMGQRMVRLEYYDPGRDGHHGELTGPGGPAVAIQTVP  371 (376)
T ss_dssp             HHHG---GGTEECSEEEEEEEECCCC-------------CCEEEEEEE
T ss_pred             HHhc---CCcEEecCeEEEEEECCCceEEEeCCCcCCCCCeeEEEecC
Confidence            9999   67899999999999999998776544323345678887744

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.00  E-value=5.4e-06  Score=81.71  Aligned_cols=56  Identities=11%  Similarity=0.144  Sum_probs=48.3

Q ss_pred             HHHHHHccCCCC--CeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          540 SLQIEKARVSKG--HGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       540 ~~l~~~l~l~~g--~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +.+.+.+++++|  .+|||+|||.|..++.+|++ |++|++||+|+.+.+.+++.++.+
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a  133 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARG  133 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHH
Confidence            456777888888  99999999999999999996 889999999999888887776543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.99  E-value=3.8e-06  Score=79.34  Aligned_cols=47  Identities=23%  Similarity=0.254  Sum_probs=39.1

Q ss_pred             HHHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhcc---CCEEEEEcCCHH
Q 036521          538 KHSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQT---GCNYTGITLSAE  584 (602)
Q Consensus       538 ~~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~---g~~v~gid~S~~  584 (602)
                      ++..+.++.. ++++.+|||||||+|.++..++++.   +++|+|+|+|+.
T Consensus         9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~   59 (201)
T 2plw_A            9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM   59 (201)
T ss_dssp             HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred             HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence            4445666665 5789999999999999999999874   489999999983

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.99  E-value=1.1e-06  Score=85.69  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=37.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-----cCCEEEEEcCCHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQLKYAE  590 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-----~g~~v~gid~S~~~l~~a~  590 (602)
                      ++++|||||||+|..+..+|+.     .+++|+|||+|++|++.|+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~  126 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA  126 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh
Confidence            5679999999999999999985     3789999999999998886

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.97  E-value=9e-06  Score=87.16  Aligned_cols=59  Identities=10%  Similarity=0.113  Sum_probs=52.3

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc-C-CEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-G-CNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g-~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+++++|++|||+|||+|+.+..+++.. + ++|+|+|+|+.+++.++++++..|+.
T Consensus       250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~  310 (450)
T 2yxl_A          250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK  310 (450)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence            34556688999999999999999999999863 4 79999999999999999999998874

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.95  E-value=1.4e-05  Score=82.10  Aligned_cols=49  Identities=18%  Similarity=0.148  Sum_probs=43.3

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ..+++.+|||||||+|.+++.++++. +.+|++||+|+++++.|++++..
T Consensus       117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~  166 (334)
T 1xj5_A          117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD  166 (334)
T ss_dssp             TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            34566899999999999999999873 57999999999999999998765

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.95  E-value=7.2e-06  Score=84.85  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             HHHHHHccCCC-CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          540 SLQIEKARVSK-GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       540 ~~l~~~l~l~~-g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..+++.+++.+ +.+|||||||+|.++..++++ .+.+++++|+ +++++.|++++.+.++.+
T Consensus       168 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~  229 (352)
T 3mcz_A          168 VDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGG  229 (352)
T ss_dssp             HHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGG
T ss_pred             HHHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCC
Confidence            46777888777 889999999999999999987 4789999999 889999999999887754

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=97.94  E-value=8.5e-06  Score=84.81  Aligned_cols=51  Identities=20%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ....+|||||||+|.++..++++ .+.+|+++|+ +++++.|++++++.++.+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~  229 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSE  229 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGG
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCccc
Confidence            45679999999999999999987 5789999999 999999999998877643

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.94  E-value=1.7e-05  Score=80.21  Aligned_cols=58  Identities=21%  Similarity=0.159  Sum_probs=50.8

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ..++.+++... .+|+.|||++||+|..++.+++ .|.+++|||+++++++.|+++++..
T Consensus       223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~-~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAAR-WGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            45556676665 6899999999999999999888 4999999999999999999999875

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.94  E-value=9e-06  Score=78.32  Aligned_cols=49  Identities=16%  Similarity=0.141  Sum_probs=43.3

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+..+|||||||.|-++..+.  .+.+|+|+|||+.|++.+++++...|..
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~  152 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWD  152 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCE
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            456699999999999999877  5789999999999999999999887653

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.92  E-value=2e-05  Score=79.86  Aligned_cols=48  Identities=19%  Similarity=0.175  Sum_probs=42.6

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ..++.+|||||||+|.+++.++++. ..+|++||+|+++++.|+++...
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~  141 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG  141 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence            3466899999999999999999873 47999999999999999998765

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.90  E-value=1.2e-05  Score=75.57  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=36.6

Q ss_pred             HHHHHcc-CCCCCeEEEEecCchHHHHHHHhccC----------CEEEEEcCCHH
Q 036521          541 LQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQTG----------CNYTGITLSAE  584 (602)
Q Consensus       541 ~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~g----------~~v~gid~S~~  584 (602)
                      .+.++.. ++++++|||||||+|.++..++++.+          ++|+|+|+|+.
T Consensus        12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            3444444 57899999999999999999999744          79999999984

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.90  E-value=8.7e-06  Score=86.73  Aligned_cols=59  Identities=8%  Similarity=0.162  Sum_probs=52.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+...+.+++|++|||+|||+|+.+.++++.. +++|+|+|+|+.+++.++++++..|+.
T Consensus       237 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~  296 (429)
T 1sqg_A          237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK  296 (429)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC
Confidence            45566788999999999999999999999973 379999999999999999999988864

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.86  E-value=6e-06  Score=81.94  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=40.2

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQL  586 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l  586 (602)
                      .++..++++..+++|++|||||||+|+++..++++  .+|+|||+|+ |+
T Consensus        61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~  107 (265)
T 2oxt_A           61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LG  107 (265)
T ss_dssp             HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CC
T ss_pred             HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hh
Confidence            34566777766789999999999999999999996  7899999998 64

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.86  E-value=0.00012  Score=81.03  Aligned_cols=118  Identities=11%  Similarity=0.033  Sum_probs=79.6

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVI  141 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la  141 (602)
                      .+..|+.+|++++++++..++.+...+  +++.... ......+..+..|....+-   .+...+....||+++|+++|+
T Consensus       312 ~d~~S~~d~L~~~~ls~~L~~~L~~~l--al~~~~~-~pa~~~l~~i~~~l~sl~~---yg~sg~~yp~GG~g~L~qaL~  385 (650)
T 1vg0_A          312 YEGTTFSEYLKTQKLTPNLQYFVLHSI--AMTSETT-SCTVDGLKATKKFLQCLGR---YGNTPFLFPLYGQGELPQCFC  385 (650)
T ss_dssp             TTTSBHHHHHTTSSSCHHHHHHHHHHT--TC--CCS-CBHHHHHHHHHHHHHHTTS---SSSSSEEEETTCTTHHHHHHH
T ss_pred             hccCCHHHHHHHhCCCHHHHHHHHHHH--hccCCCC-CchhHHHHHHHHHHHHHHh---hccCceEEeCCchhHHHHHHH
Confidence            468999999999999999777655433  3332221 1111122222333332111   122356677899999999999


Q ss_pred             HHHhcCCCeEEeCCceeEEEecC--CeEE-EEeCCCcEEecCEEEEe
Q 036521          142 ALLESLGCQIKTGCEVCSVLQYD--EGRT-EVRGDGFQGFYDGCIMA  185 (602)
Q Consensus       142 ~~l~~~g~~v~l~t~V~~i~~~~--~gv~-v~~~~g~~~~ad~VI~A  185 (602)
                      +.+...|++|+++++|.+|..++  +.+. |+..+|+++.||+||++
T Consensus       386 r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~  432 (650)
T 1vg0_A          386 RMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE  432 (650)
T ss_dssp             HHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred             HHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC
Confidence            99988999999999999998776  4453 44567888999999983

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.86  E-value=2.1e-05  Score=79.77  Aligned_cols=47  Identities=23%  Similarity=0.229  Sum_probs=41.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+++.+|||||||+|.++..+++.. ..+|++||+|+++++.|+++..
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~  140 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFP  140 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhH
Confidence            3567899999999999999999873 5799999999999999999874

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.85  E-value=1.1e-05  Score=82.49  Aligned_cols=47  Identities=15%  Similarity=0.191  Sum_probs=42.2

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .++.+|||||||+|.+++.++++ .+.+|+++|+|+++++.|+++++.
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~  162 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  162 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            45679999999999999999987 368999999999999999998764

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.83  E-value=6.4e-06  Score=82.22  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=41.4

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYA  589 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a  589 (602)
                      .++..+.++..+++|++|||+|||+|+++..++++  .+|+|||+|+ |+..+
T Consensus        69 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a  118 (276)
T 2wa2_A           69 AKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSG  118 (276)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTT
T ss_pred             HHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhh
Confidence            34566677766789999999999999999999996  6899999998 64433

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.83  E-value=1.2e-05  Score=77.14  Aligned_cols=37  Identities=27%  Similarity=0.379  Sum_probs=34.2

Q ss_pred             CCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      +.+|||||||+|.++..++++     +|+|+|+++++.|+++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~   84 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR   84 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc
Confidence            789999999999999998874     9999999999999876

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.83  E-value=1e-05  Score=83.10  Aligned_cols=59  Identities=8%  Similarity=0.054  Sum_probs=50.7

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...+++.++.++ .+|||||||+|..+..++++ .+.+++++|+ +++++.|++++.+.|+.
T Consensus       157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~  216 (334)
T 2ip2_A          157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG  216 (334)
T ss_dssp             HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT
T ss_pred             HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC
Confidence            346677777777 89999999999999999987 4789999999 99999999998776553

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.83  E-value=1.6e-05  Score=79.68  Aligned_cols=45  Identities=20%  Similarity=0.201  Sum_probs=40.7

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .++.+|||||||+|.+++.++++...+|++||+|+++++.|+++.
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~  118 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI  118 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            456799999999999999999873469999999999999999987

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.82  E-value=3.4e-05  Score=77.88  Aligned_cols=47  Identities=19%  Similarity=0.117  Sum_probs=41.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ..+.+|||||||+|.+++.++++. ..+|++||+|+++++.|++++..
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~  136 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQ  136 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHh
Confidence            345799999999999999999873 57999999999999999998754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.79  E-value=5.3e-05  Score=75.55  Aligned_cols=46  Identities=17%  Similarity=0.258  Sum_probs=41.3

Q ss_pred             CCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+.+|||||||+|.+++.++++. ..+|++||+|+++++.|+++...
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~  121 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPS  121 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHh
Confidence            46799999999999999999874 47999999999999999998754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.77  E-value=2e-05  Score=72.02  Aligned_cols=49  Identities=18%  Similarity=0.156  Sum_probs=40.0

Q ss_pred             HHHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHH
Q 036521          538 KHSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLK  587 (602)
Q Consensus       538 ~~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~  587 (602)
                      ++..+++.+. ++++.+|||+|||+|.++..++++.  +++|+|+|+|+ +++
T Consensus         9 ~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~   60 (180)
T 1ej0_A            9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP   60 (180)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC
T ss_pred             HHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc
Confidence            3445566665 6788999999999999999999873  58999999998 653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.74  E-value=2.7e-05  Score=80.32  Aligned_cols=60  Identities=17%  Similarity=0.265  Sum_probs=49.1

Q ss_pred             HHHHHHHc-cCCCCCeEEEEecCchHHHHHHHhccC------CEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          539 HSLQIEKA-RVSKGHGVLEIGCGWGTFAIEVVRQTG------CNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       539 ~~~l~~~l-~l~~g~~vLDiGcG~G~~~~~la~~~g------~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +..+++.+ ..+++.+|||+|||+|.+++.++++..      .+|+|+|+|+.+++.|+.++...|+
T Consensus       118 ~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~  184 (344)
T 2f8l_A          118 VAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ  184 (344)
T ss_dssp             HHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC
Confidence            34455544 445678999999999999999988632      7899999999999999999987776

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.73  E-value=3.3e-05  Score=82.61  Aligned_cols=63  Identities=16%  Similarity=0.223  Sum_probs=53.8

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--------------cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--------------TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--------------~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...+.+++.+..+++.+|||.|||+|++.+.+++.              .+.+++|+|+++.+++.|+.+....|+.
T Consensus       158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            34556777777888999999999999999998874              2468999999999999999999888874

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.73  E-value=0.00012  Score=72.74  Aligned_cols=44  Identities=16%  Similarity=0.120  Sum_probs=37.2

Q ss_pred             CCCeEEEEecCchH----HHHHHHhcc-----CCEEEEEcCCHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGT----FAIEVVRQT-----GCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       550 ~g~~vLDiGcG~G~----~~~~la~~~-----g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ++.+|||+|||+|.    +++.+++..     +++|+|+|+|++|++.|++.+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            45799999999998    677777652     469999999999999999864

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.73  E-value=2.1e-05  Score=80.02  Aligned_cols=47  Identities=21%  Similarity=0.153  Sum_probs=41.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .++.+|||||||+|.+++.++++. +.+|++||+|+++++.|+++...
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~  154 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG  154 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            456799999999999999999873 57999999999999999998754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.72  E-value=3.1e-05  Score=78.81  Aligned_cols=47  Identities=23%  Similarity=0.266  Sum_probs=42.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .++.+|||||||+|.++..++++ .+.+|++||+|+++++.|+++...
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~  123 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE  123 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHh
Confidence            45679999999999999999987 357999999999999999998764

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.72  E-value=6e-05  Score=78.63  Aligned_cols=47  Identities=13%  Similarity=-0.013  Sum_probs=43.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ++.+|||+|||+|.+++.+|++ .+.+|+++|+|++.++.++++++.+
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n   94 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN   94 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            6889999999999999999997 4579999999999999999999988

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.71  E-value=9.8e-05  Score=77.03  Aligned_cols=52  Identities=13%  Similarity=0.170  Sum_probs=45.8

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...+|.+||||| |+|.+++.+++.. +.+|+|+|+|++|++.|+++++..|++
T Consensus       169 ~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~  221 (373)
T 2qm3_A          169 GDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE  221 (373)
T ss_dssp             TCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            344688999999 9999999999862 369999999999999999999988874

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.71  E-value=4.2e-05  Score=75.39  Aligned_cols=52  Identities=15%  Similarity=0.155  Sum_probs=48.4

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ++.+++.+.+++|..+||.+||.|+.+..++++ +++|+|+|.++++++.|++
T Consensus        11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A           11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh
Confidence            457788889999999999999999999999997 8899999999999999987

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.68  E-value=6.8e-05  Score=75.86  Aligned_cols=43  Identities=19%  Similarity=0.130  Sum_probs=39.5

Q ss_pred             CeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521          552 HGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       552 ~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+|||||||+|.++.+++++ .+++|++||+|+++++.|+++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~  134 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFD  134 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcc
Confidence            39999999999999999995 57899999999999999999864

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.66  E-value=0.0001  Score=73.81  Aligned_cols=48  Identities=15%  Similarity=0.171  Sum_probs=42.3

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ..++.+|||||||.|.++..+++.. +.+|++||+|+++++.|+++...
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~  124 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  124 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence            4566899999999999999999873 57999999999999999998754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.66  E-value=5.4e-05  Score=79.07  Aligned_cols=52  Identities=10%  Similarity=0.029  Sum_probs=47.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TG-CNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g-~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++|.+|||++||+|.+++.+|++ .| .+|+++|+|++.++.++++++.+|+++
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~  104 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPE  104 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCG
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCC
Confidence            56889999999999999999986 35 589999999999999999999999875

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.52  E-value=0.0001  Score=64.84  Aligned_cols=47  Identities=13%  Similarity=0.126  Sum_probs=36.8

Q ss_pred             HHHHHHHccCCCCCeEEEEecCch-HHHHHHHhccCCEEEEEcCCHHHHH
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWG-TFAIEVVRQTGCNYTGITLSAEQLK  587 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G-~~~~~la~~~g~~v~gid~S~~~l~  587 (602)
                      .+.|.+..  +++.+|||||||.| ..|.+|+++.|+.|+++|+|+..++
T Consensus        26 aeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           26 AVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             HHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             HHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            33444443  45679999999999 6999999856999999999986543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.50  E-value=3e-05  Score=78.53  Aligned_cols=47  Identities=19%  Similarity=0.260  Sum_probs=38.1

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcC----CHHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITL----SAEQL  586 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~----S~~~l  586 (602)
                      ++..+.++..+++|++|||+|||+|+++..++++  .+|+|||+    |+.++
T Consensus        70 KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~  120 (305)
T 2p41_A           70 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHE  120 (305)
T ss_dssp             HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSC
T ss_pred             HHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHH
Confidence            3445666655688999999999999999999996  58999999    66554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.48  E-value=0.00011  Score=83.00  Aligned_cols=62  Identities=21%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-------------------------------------------CCE
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-------------------------------------------GCN  575 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-------------------------------------------g~~  575 (602)
                      ...++...+.+++..|||.+||+|.+++.+|...                                           ..+
T Consensus       179 Aa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~  258 (703)
T 3v97_A          179 AAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH  258 (703)
T ss_dssp             HHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence            3456777788889999999999999999988641                                           258


Q ss_pred             EEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          576 YTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       576 v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      |+|+|+++.+++.|+++++.+|+++
T Consensus       259 i~G~Did~~av~~A~~N~~~agv~~  283 (703)
T 3v97_A          259 FYGSDSDARVIQRARTNARLAGIGE  283 (703)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCGG
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999875

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.46  E-value=4.6e-05  Score=80.75  Aligned_cols=53  Identities=21%  Similarity=0.410  Sum_probs=43.9

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYA  589 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a  589 (602)
                      ...+.+++.+...++.+|||+|||+|.+++.++++  .+.+|+|+|+++++++.|
T Consensus        26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a   80 (421)
T 2ih2_A           26 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP   80 (421)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred             HHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC
Confidence            34456777777656779999999999999999986  358999999999988765

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.46  E-value=0.0001  Score=72.95  Aligned_cols=44  Identities=9%  Similarity=-0.117  Sum_probs=39.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ..+.+|||||||+|.++..++++ +.+|++||+|+++++.|+++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~  114 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFF  114 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTS
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHH
Confidence            35579999999999999999987 689999999999999998865

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.43  E-value=0.00023  Score=70.24  Aligned_cols=60  Identities=25%  Similarity=0.269  Sum_probs=49.5

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..++.+++.. ..+|+.|||..||+|..++.+.+ .|.+++|+|++++.++.|++|++.+++
T Consensus       200 ~l~~~~i~~~-~~~~~~vlD~f~GsGtt~~~a~~-~gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          200 DLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            4555666655 37899999999999999998877 599999999999999999999988765

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.43  E-value=4.6e-05  Score=78.68  Aligned_cols=48  Identities=21%  Similarity=0.327  Sum_probs=40.4

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHH
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLK  587 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~  587 (602)
                      ...+++.++++++.+|||||||+|.++..++++ .+.+++++|++ ++++
T Consensus       173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~  221 (348)
T 3lst_A          173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA  221 (348)
T ss_dssp             HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT
T ss_pred             HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh
Confidence            346778888888999999999999999999987 46799999994 4544

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.36  E-value=0.00015  Score=75.51  Aligned_cols=52  Identities=17%  Similarity=0.199  Sum_probs=43.7

Q ss_pred             HHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHH
Q 036521          539 HSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       539 ~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~  591 (602)
                      ...+++.+. +.++.+|||||||+|.++..++++ ++.+++++|+ +++++.|++
T Consensus       191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  244 (368)
T 3reo_A          191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA  244 (368)
T ss_dssp             HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh
Confidence            345666665 677889999999999999999987 5789999999 889887764

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.36  E-value=0.00018  Score=74.93  Aligned_cols=52  Identities=12%  Similarity=0.073  Sum_probs=44.2

Q ss_pred             HHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHH
Q 036521          539 HSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       539 ~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~  591 (602)
                      ...+++.+. ++++.+|||||||+|.++..++++ .+.+++++|+ +++++.|++
T Consensus       197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~  250 (372)
T 1fp1_D          197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP  250 (372)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh
Confidence            456677775 677889999999999999999997 4789999999 999988764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.30  E-value=0.00028  Score=77.16  Aligned_cols=90  Identities=14%  Similarity=0.113  Sum_probs=54.5

Q ss_pred             hccchHHHHhhcCCCCc----ccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-----
Q 036521          502 YDLSNELFALFMDESMT----YSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-----  572 (602)
Q Consensus       502 Yd~~~~~y~~~~~~~~~----ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-----  572 (602)
                      .|...+.|+.++.....    -...+|.+         ....+.+++.+...++.+|||.+||+|++.+.+++..     
T Consensus       126 ~d~lG~~YE~ll~~~a~~~~~~~G~fyTP---------~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~  196 (541)
T 2ar0_A          126 RDDFGDMYEGLLQKNANETKSGAGQYFTP---------RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN  196 (541)
T ss_dssp             ------------------------CCCCC---------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTT
T ss_pred             hhHHHHHHHHHHHHHHHhccccCCeeeCC---------HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhc
Confidence            35556677776654311    11224432         2344456777777889999999999999999887641     


Q ss_pred             --------------CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          573 --------------GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       573 --------------g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                                    ..+++|+|+++.+++.|+.++...|+..
T Consensus       197 ~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~  238 (541)
T 2ar0_A          197 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG  238 (541)
T ss_dssp             TTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred             ccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence                          2479999999999999999988777653

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.30  E-value=3.3e-05  Score=73.61  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=28.5

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAE  584 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~  584 (602)
                      ..++.+|||||||+|.++..++    .+|+|+|+|+.
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~   97 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIR----NPVHCFDLASL   97 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS
T ss_pred             cCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC
Confidence            4577899999999999988763    68999999986

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.29  E-value=0.00024  Score=73.81  Aligned_cols=52  Identities=12%  Similarity=0.115  Sum_probs=44.1

Q ss_pred             HHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHH
Q 036521          539 HSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       539 ~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~  591 (602)
                      ...+++.+. .+++.+|||||||+|.++..++++ ++.+++++|+ +++++.|++
T Consensus       189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  242 (364)
T 3p9c_A          189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ  242 (364)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh
Confidence            445677776 777899999999999999999987 5789999999 889887764

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.28  E-value=0.00014  Score=75.23  Aligned_cols=44  Identities=11%  Similarity=0.083  Sum_probs=38.8

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHH
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~  591 (602)
                      .++++.+|||||||+|.++..++++ .+.+|+|+|+ +++++.|++
T Consensus       185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  229 (352)
T 1fp2_A          185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG  229 (352)
T ss_dssp             HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc
Confidence            4567789999999999999999987 4789999999 999988764

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.20  E-value=0.00029  Score=69.06  Aligned_cols=48  Identities=21%  Similarity=0.320  Sum_probs=41.3

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAE  584 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~  584 (602)
                      -|+..|.++..++++++|||+|||+|+++.+++++.++ .|+|+|++..
T Consensus        77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence            46777888888999999999999999999999976554 7999999864

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.10  E-value=0.00028  Score=73.18  Aligned_cols=49  Identities=20%  Similarity=0.347  Sum_probs=38.3

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecC------chHHHHHHHhc--cCCEEEEEcCCHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCG------WGTFAIEVVRQ--TGCNYTGITLSAEQL  586 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG------~G~~~~~la~~--~g~~v~gid~S~~~l  586 (602)
                      ..++.++..+.. ++.+|||||||      +|+.++.++++  .+++|+|||+|++|.
T Consensus       204 ~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~  260 (419)
T 3sso_A          204 PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH  260 (419)
T ss_dssp             HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG
T ss_pred             HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh
Confidence            345566766653 45799999999      77888888876  478999999999983

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.10  E-value=0.00044  Score=71.50  Aligned_cols=57  Identities=19%  Similarity=0.195  Sum_probs=47.9

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ..+++..+..+..+|||||||.|.+++.++++ ++.+++..|+ |++++.|++++...+
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~  226 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE  226 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc
Confidence            45677777788889999999999999999998 6789999997 889999998875443

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.10  E-value=0.00041  Score=67.86  Aligned_cols=47  Identities=26%  Similarity=0.385  Sum_probs=39.8

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSA  583 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~  583 (602)
                      -|+..+.++..++++.+|||+|||+|+++.+++++.++ .|+|+|++.
T Consensus        61 ~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv  108 (277)
T 3evf_A           61 AKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR  108 (277)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             HHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec
Confidence            46677888878899999999999999999999987554 788999884

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.09  E-value=0.00075  Score=73.67  Aligned_cols=88  Identities=17%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             hccchHHHHhhcCC----CCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-----
Q 036521          502 YDLSNELFALFMDE----SMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-----  572 (602)
Q Consensus       502 Yd~~~~~y~~~~~~----~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-----  572 (602)
                      .|...+.|+.++..    ...-...+|.+         ....+.|++.+..+++ +|||.+||+|++.+.+++..     
T Consensus       202 ~D~lG~~yE~ll~~~a~~~~k~~G~fyTP---------~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~  271 (544)
T 3khk_A          202 KDILGHVYEYFLGQFALAEGKQGGQYYTP---------KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHAN  271 (544)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTCCSTTTCCC---------HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhCccCCeEeCC---------HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhcc
Confidence            46666777766532    11112234433         4455677777777777 99999999999998876531     


Q ss_pred             -----------CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          573 -----------GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       573 -----------g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                                 ..+++|+|+++.+++.|+.+....|++
T Consensus       272 ~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  309 (544)
T 3khk_A          272 VKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID  309 (544)
T ss_dssp             HHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC
T ss_pred             ccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC
Confidence                       468999999999999999999888875

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.07  E-value=0.00048  Score=65.29  Aligned_cols=47  Identities=21%  Similarity=0.340  Sum_probs=41.3

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSA  583 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~  583 (602)
                      -|+..+.++..++++++|||+||++|+.+.+++.+.|+ +|.|+|+-.
T Consensus        65 ~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~  112 (267)
T 3p8z_A           65 AKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGG  112 (267)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCS
T ss_pred             HHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCC
Confidence            46778888888999999999999999999999988665 699999864

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.02  E-value=0.00047  Score=67.61  Aligned_cols=48  Identities=21%  Similarity=0.349  Sum_probs=41.9

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAE  584 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~  584 (602)
                      -|+..+.++..++++++|||+||++|+++.+++.+.|+ +|.|+|+-..
T Consensus        81 ~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           81 AKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            46777888888999999999999999999999988776 5999999754

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.97  E-value=0.00084  Score=63.22  Aligned_cols=48  Identities=13%  Similarity=0.135  Sum_probs=42.0

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ++.++|||||||  .-++.+|+..+.+|++||.+++..+.|++..+++|+
T Consensus        29 ~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~   76 (202)
T 3cvo_A           29 EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPP   76 (202)
T ss_dssp             HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred             hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            356799999995  678888884478999999999999999999999997

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.90  E-value=0.00099  Score=72.61  Aligned_cols=62  Identities=19%  Similarity=0.260  Sum_probs=50.8

Q ss_pred             HHHHHHHHcc----CCCCCeEEEEecCchHHHHHHHhcc----CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          538 KHSLQIEKAR----VSKGHGVLEIGCGWGTFAIEVVRQT----GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       538 ~~~~l~~~l~----l~~g~~vLDiGcG~G~~~~~la~~~----g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+.+++.+.    ..++.+|||.+||+|++.+.++++.    ..+++|+|+++.+++.|+.++...|+.
T Consensus       205 Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  274 (542)
T 3lkd_A          205 VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP  274 (542)
T ss_dssp             HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence            3445555554    4578899999999999999888752    579999999999999999999888874

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=96.86  E-value=0.00047  Score=71.31  Aligned_cols=50  Identities=10%  Similarity=0.073  Sum_probs=40.7

Q ss_pred             HHHHHc--cCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHH
Q 036521          541 LQIEKA--RVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       541 ~l~~~l--~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+++.+  .++++.+|||||||+|.++..++++ .+.+++++|+ +.+++.|++
T Consensus       182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  234 (358)
T 1zg3_A          182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG  234 (358)
T ss_dssp             HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC
T ss_pred             HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc
Confidence            345555  4556789999999999999999997 4689999999 789877653

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.66  E-value=0.0024  Score=63.83  Aligned_cols=38  Identities=18%  Similarity=0.126  Sum_probs=29.7

Q ss_pred             HccCCCCCeEEEEec------CchHHHHHHHhcc--CCEEEEEcCCHH
Q 036521          545 KARVSKGHGVLEIGC------GWGTFAIEVVRQT--GCNYTGITLSAE  584 (602)
Q Consensus       545 ~l~l~~g~~vLDiGc------G~G~~~~~la~~~--g~~v~gid~S~~  584 (602)
                      .+.+++|++|||+||      |+|.  ..+++..  +++|+|+|+|+.
T Consensus        58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC
T ss_pred             hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC
Confidence            346889999999999      5587  4455543  589999999986

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.61  E-value=0.0023  Score=64.48  Aligned_cols=53  Identities=9%  Similarity=0.061  Sum_probs=47.4

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAE  590 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~  590 (602)
                      +++.+++.|.++||..++|..||.|+.+..++++  ..++|+|+|.++++++.|+
T Consensus        45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            3457889999999999999999999999999987  3579999999999999984

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.40  E-value=0.0027  Score=65.03  Aligned_cols=35  Identities=11%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSA  583 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~  583 (602)
                      +++|++|||+||..|+.+..++++ |++|++||+.+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~  243 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP  243 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh
Confidence            679999999999999999999997 89999999874

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.39  E-value=0.0032  Score=69.32  Aligned_cols=50  Identities=8%  Similarity=0.101  Sum_probs=41.0

Q ss_pred             CCeEEEEecCchHH---HHHHHhccCC--EEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          551 GHGVLEIGCGWGTF---AIEVVRQTGC--NYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       551 g~~vLDiGcG~G~~---~~~la~~~g~--~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +..|||+|||+|-+   ++.++++.+.  +|++|+-|+ |...|++.++++|++++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dk  412 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQ  412 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGG
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCe
Confidence            35799999999999   6666665444  789999997 88899999999998764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.14  E-value=0.0053  Score=60.54  Aligned_cols=47  Identities=28%  Similarity=0.407  Sum_probs=37.9

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAE  584 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~  584 (602)
                      |+..+.++--+++|++|||+||++|+++..++++.++ .|+|+|++..
T Consensus        69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            5566667734578999999999999999999986454 7999999753

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.14  E-value=0.0058  Score=68.45  Aligned_cols=44  Identities=9%  Similarity=0.078  Sum_probs=37.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccC----CEEEEEcCCHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTG----CNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g----~~v~gid~S~~~l~~a~~  591 (602)
                      .+++.+|||.|||+|.+++.++++.+    .+++|+|+++.+++.|+.
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~  366 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSI  366 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHH
Confidence            34688999999999999999998643    579999999999999943

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.08  E-value=0.01  Score=60.81  Aligned_cols=58  Identities=16%  Similarity=0.121  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHccCCC------CCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSK------GHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~------g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .+.++.|++.+++++      ++.|||||.|.|.++..|+++. ..+|++|++++..+...++..
T Consensus        38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            456678899998874      5899999999999999999852 469999999999999988765

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.99  E-value=0.013  Score=63.84  Aligned_cols=88  Identities=18%  Similarity=0.262  Sum_probs=64.5

Q ss_pred             ccchHHHHhhcCC---CCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--------
Q 036521          503 DLSNELFALFMDE---SMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--------  571 (602)
Q Consensus       503 d~~~~~y~~~~~~---~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--------  571 (602)
                      |...+.|+.++..   ...-...||.+         +...+.+++.+..++|++|+|-+||+|++.+.+.++        
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP---------~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~  246 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTP---------RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTV  246 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCC---------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSH
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCc---------HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccch
Confidence            5556677766532   11112335544         556678888888899999999999999999877653        


Q ss_pred             ------cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          572 ------TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       572 ------~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                            ....++|+|+++.+...|+-+.--+|++
T Consensus       247 ~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~  280 (530)
T 3ufb_A          247 EDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE  280 (530)
T ss_dssp             HHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred             hHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence                  1246999999999999999888777765

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=95.97  E-value=0.028  Score=59.20  Aligned_cols=83  Identities=11%  Similarity=0.087  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhcCccc-cCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEE
Q 036521          105 AFSILSFYRNHHLLQ-LFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCI  183 (602)
Q Consensus       105 ~~~~l~~~~~~g~~~-~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI  183 (602)
                      ...++.++...|+.. ....+..++ ......+.+.+.+.+.+.|.+|+++++|++|..++++|.|.+.+| ++.||.||
T Consensus       103 ~~~~~~~~~~~Gi~~~~~~~g~~~~-~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VI  180 (417)
T 3v76_A          103 PQDFVALVERHGIGWHEKTLGQLFC-DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLV  180 (417)
T ss_dssp             HHHHHHHHHHTTCCEEECSTTEEEE-SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEE
T ss_pred             HHHHHHHHHHcCCCcEEeeCCEEee-CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEE
Confidence            334556666666421 123344444 556678889999988888999999999999999888999988888 79999999


Q ss_pred             EecChH
Q 036521          184 MAVHAP  189 (602)
Q Consensus       184 ~A~p~~  189 (602)
                      +|+=..
T Consensus       181 lAtG~~  186 (417)
T 3v76_A          181 VASGGK  186 (417)
T ss_dssp             ECCCCS
T ss_pred             ECCCCc
Confidence            999443

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=95.92  E-value=0.0094  Score=61.30  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=51.3

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .....|++++|++|||+++|.|+-+.++|+. .+..|+++|+|+.-++..+++++..|..
T Consensus       139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~  198 (359)
T 4fzv_A          139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPE  198 (359)
T ss_dssp             HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhh
Confidence            3456678999999999999999999999986 2347999999999999999999988764

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=95.75  E-value=0.01  Score=65.46  Aligned_cols=50  Identities=8%  Similarity=0.032  Sum_probs=35.6

Q ss_pred             CCeEEEEecCchHHHH---HHHhccC-----------CEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          551 GHGVLEIGCGWGTFAI---EVVRQTG-----------CNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~---~la~~~g-----------~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +..|||||||+|-++.   .+++..+           .+|++|+.|+..+...+.+.. .|++++
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~  473 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRR  473 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCe
Confidence            4579999999999963   3333223           399999999977666555554 777653

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.70  E-value=0.0091  Score=57.56  Aligned_cols=46  Identities=22%  Similarity=0.336  Sum_probs=35.2

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLS  582 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S  582 (602)
                      -|+..|-++--++||++|||+||+.|+.+.+++++.+. .|.|.++.
T Consensus        60 yKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig  106 (269)
T 2px2_A           60 AKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKG  106 (269)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCC
T ss_pred             HHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEc
Confidence            35667777777899999999999999999999987333 44455443

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.47  E-value=0.015  Score=59.12  Aligned_cols=60  Identities=12%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .++.+++.. .++|+.|||--||+|..++.+.+ .|.+.+|+|+++...+.|++|++.++.+
T Consensus       241 l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~-~gr~~ig~e~~~~~~~~~~~r~~~~~~~  300 (323)
T 1boo_A          241 LPEFFIRML-TEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLDNNIS  300 (323)
T ss_dssp             HHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSCSCSC
T ss_pred             HHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhcccc
Confidence            444556544 47899999999999999987766 5999999999999999999999877653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=95.43  E-value=0.02  Score=58.89  Aligned_cols=56  Identities=11%  Similarity=-0.066  Sum_probs=49.4

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ...+...|++.+.++|.+|+++++|++|.+++++|.|.+.+| ++.||+||+|+-+.
T Consensus       153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~  208 (381)
T 3nyc_A          153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAW  208 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChh
Confidence            357888898888888999999999999999888899988888 79999999998654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=95.31  E-value=0.033  Score=58.72  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=50.2

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCC---ceeEEEecCCeEE-EEeCCCcEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGC---EVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t---~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ...+...|.+.+.++|.+|++++   +|++|..++++|. |++.+|+++.||+||+|+-+.
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~  220 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGAS  220 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCC
Confidence            45788888888888899999999   9999999888887 888888789999999999665

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=95.24  E-value=0.065  Score=56.83  Aligned_cols=80  Identities=19%  Similarity=0.267  Sum_probs=59.1

Q ss_pred             HHHHHHhcCcc-ccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEe
Q 036521          108 ILSFYRNHHLL-QLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMA  185 (602)
Q Consensus       108 ~l~~~~~~g~~-~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A  185 (602)
                      ++.++...|+. .....+..++..+....+.+.|.+.+.+.|.+|+++++|++|..++++ +.|.+.+|+++.||.||+|
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlA  186 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIA  186 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEEC
Confidence            44555555531 111223455545556788899999988889999999999999987777 6788888867999999999


Q ss_pred             cC
Q 036521          186 VH  187 (602)
Q Consensus       186 ~p  187 (602)
                      +=
T Consensus       187 tG  188 (447)
T 2i0z_A          187 VG  188 (447)
T ss_dssp             CC
T ss_pred             CC
Confidence            83

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.03  E-value=0.039  Score=61.92  Aligned_cols=56  Identities=14%  Similarity=0.048  Sum_probs=50.0

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+...|.+.+.++|.+|+++++|++|.+++++|.|.+.+|+++.||.||+|+-..
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~  472 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ  472 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcc
Confidence            57888888888888999999999999999999999988887789999999999654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.01  E-value=0.03  Score=58.55  Aligned_cols=49  Identities=27%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      ++.+++++|++||.+|||. |.+++.+|+..|+ +|+++|.|++.++.+++
T Consensus       178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            3677899999999999987 8889999988898 99999999999988764

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.01  E-value=0.026  Score=57.12  Aligned_cols=60  Identities=18%  Similarity=0.154  Sum_probs=47.0

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCH---HHHHHHHHHHHHcCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSA---EQLKYAEMKVNEAGL  598 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~---~~l~~a~~~~~~~gl  598 (602)
                      ..++.+++.. ..+|+.|||--||.|..++.+.+ .|.+.+|+|+++   +.++.|++|++++|+
T Consensus       230 ~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~-~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~~  292 (319)
T 1eg2_A          230 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFLQDDGL  292 (319)
T ss_dssp             HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHH-cCCcEEEEECCccHHHHHHHHHHHHHHccC
Confidence            3445566554 47899999999999999988776 599999999999   999999999988774

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=94.96  E-value=0.039  Score=56.21  Aligned_cols=57  Identities=19%  Similarity=-0.028  Sum_probs=48.6

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCC--cEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDG--FQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g--~~~~ad~VI~A~p~~  189 (602)
                      ...+.+.|.+.+.++|.+|+++++|++|..++++ +.|.+.+|  .++.||.||+|+=+.
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~  208 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLH  208 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcc
Confidence            4578888998888889999999999999998776 88888777  378999999999554

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=94.71  E-value=0.045  Score=61.61  Aligned_cols=56  Identities=13%  Similarity=0.082  Sum_probs=49.3

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc-EEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF-QGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~-~~~ad~VI~A~p~~  189 (602)
                      ..+.+.|.+.+.++|.+|+++++|++|.+++++|.|.+.+|+ ++.||.||+|+-+.
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~  468 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHR  468 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence            578888988888889999999999999999889999888886 79999999999665

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.53  E-value=0.053  Score=55.98  Aligned_cols=51  Identities=18%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      +.+..++++|++||-+|||. |.+++.+|+..|+ +|+++|.|++.++.+++.
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            44677899999999999986 8888899988898 799999999999988753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.44  E-value=0.062  Score=54.68  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=44.2

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .++..++++|++||-+|+|. |.+++.+|+..|++|+++|.|++.++.+++
T Consensus       158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            34667889999999999985 999999999889999999999999998865

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=94.27  E-value=0.078  Score=54.95  Aligned_cols=55  Identities=13%  Similarity=0.213  Sum_probs=46.7

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+...|.+.+.+.|.+|+.+++|++|.+++++|.|.+.+| ++.||.||+|+=+.
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence            45777888877777999999999999999888898887766 79999999999553

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=94.24  E-value=0.17  Score=52.77  Aligned_cols=77  Identities=14%  Similarity=0.034  Sum_probs=56.6

Q ss_pred             HHHHHHhcCccc-cCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEec----CCeEEEEeCCCcEEecCEE
Q 036521          108 ILSFYRNHHLLQ-LFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQY----DEGRTEVRGDGFQGFYDGC  182 (602)
Q Consensus       108 ~l~~~~~~g~~~-~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~----~~gv~v~~~~g~~~~ad~V  182 (602)
                      +++++...|+.. ....+..++.. ....+.+.+.+.+.+.|.+|+++++|++|..+    +++|.|.+.+| ++.||+|
T Consensus        83 ~~~~~~~~Gi~~~~~~~g~~~p~~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~V  160 (401)
T 2gqf_A           83 FISLVAEQGITYHEKELGQLFCDE-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNL  160 (401)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEETT-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEE
T ss_pred             HHHHHHhCCCceEECcCCEEccCC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEE
Confidence            445555555321 12234444433 56678888888888789999999999999977    56788888777 7999999


Q ss_pred             EEec
Q 036521          183 IMAV  186 (602)
Q Consensus       183 I~A~  186 (602)
                      |+|+
T Consensus       161 VlAt  164 (401)
T 2gqf_A          161 IVAT  164 (401)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9999

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.22  E-value=0.073  Score=54.61  Aligned_cols=49  Identities=31%  Similarity=0.392  Sum_probs=42.8

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      ++.+++++|++||-+|+|. |.+++.+|+..|+ +|+++|.|++.++.+++
T Consensus       164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            3667899999999999985 8888888987898 99999999999888864

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=94.18  E-value=0.078  Score=54.29  Aligned_cols=55  Identities=22%  Similarity=0.277  Sum_probs=47.7

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+.+.|.+.+.+.|.+|+.+++|++|..++++|.|.+.+| ++.||.||+|+-+.
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~  203 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTW  203 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCcc
Confidence            46778888888778999999999999999888898888888 59999999999764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.05  E-value=0.094  Score=47.68  Aligned_cols=52  Identities=13%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.+.|.+++++ +|++++.+++++.|.+.+| ++.+|.||+|+-
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G  107 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTH  107 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCT
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCC
Confidence            467788888888889999999 9999998888888888888 799999999984

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.02  E-value=0.086  Score=54.93  Aligned_cols=49  Identities=27%  Similarity=0.196  Sum_probs=42.8

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +..+++++|++||-+|||. |.+++.+|+..|+ +|+++|.|++.++.+++
T Consensus       178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          178 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            3467899999999999986 8888999988898 79999999999998865

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=93.85  E-value=0.1  Score=53.60  Aligned_cols=56  Identities=13%  Similarity=-0.031  Sum_probs=47.8

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ...+.+.|.+.+.++|.+|+.+++|++|..++++|. |.+.+| ++.||.||+|+=+.
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~  204 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAW  204 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchh
Confidence            356778888888888999999999999999888887 888777 79999999999554

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.70  E-value=0.093  Score=54.02  Aligned_cols=55  Identities=16%  Similarity=0.079  Sum_probs=48.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+.+.|.+.+.++|.+|+.+++|++|+.++++|.|.+.+| ++.||.||+|+-+.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~  204 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAW  204 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence            57888888888888999999999999999888888888766 79999999999654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.60  E-value=0.079  Score=54.69  Aligned_cols=49  Identities=20%  Similarity=0.305  Sum_probs=42.7

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +..+++++|++||-+|+|. |.+++.+|+..|++|++++.|++.++.+++
T Consensus       187 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          187 LRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4456889999999999985 888888888789999999999999998875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.58  E-value=0.07  Score=54.54  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=43.4

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+...++++|++||-+|+|. |.+++.+|+..|++|+++|.|++.++.+++
T Consensus       168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh
Confidence            34566899999999999985 888888898889999999999999988865

>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=93.53  E-value=0.042  Score=50.69  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=30.8

Q ss_pred             cCCCCeEEeccccC--CCCChhHHHHHHHHHHHhcCC
Q 036521          306 QGKRGIWFCEAYQG--YGFHEDGLKAGMIAAHGVLGK  340 (602)
Q Consensus       306 qg~~gl~~aG~~~g--~g~~E~av~SG~~aA~~ll~~  340 (602)
                      +..++|+|||+++.  .|++|+|+.||.++|++|+..
T Consensus       115 ~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~~~  151 (181)
T 2e1m_C          115 RPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVNEA  151 (181)
T ss_dssp             SCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHHHH
Confidence            35679999999985  888999999999999999764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=93.46  E-value=0.083  Score=54.29  Aligned_cols=55  Identities=15%  Similarity=0.036  Sum_probs=48.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+.+.|.+.+.++|.+|+++++|++|..++++|.|.+.+| ++.||.||+|+.+.
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~  218 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVW  218 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChh
Confidence            56888888888888999999999999998888888888777 79999999999664

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.45  E-value=0.12  Score=52.77  Aligned_cols=49  Identities=27%  Similarity=0.304  Sum_probs=42.6

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ++..++++|++||-+|+|. |.+++.+|+..|++|+++|.|++.++.+++
T Consensus       161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            3667899999999999985 788888888789999999999999988864

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=93.43  E-value=0.16  Score=52.41  Aligned_cols=55  Identities=27%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+++++++|.+|+.+++++.|++.+|+++.+|.||+|+..
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~  241 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGL  241 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCC
Confidence            4567888888888899999999999999888888888888888999999999843

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=93.31  E-value=0.045  Score=52.27  Aligned_cols=54  Identities=20%  Similarity=0.244  Sum_probs=39.0

Q ss_pred             eEEEEEccCCCCChhHHHHHHHHHhhcCCCCeEEeccccCCCCChhHHHHHHHHHHHhcC
Q 036521          280 TLLKWSTGHPVPSVAASKASLELDHIQGKRGIWFCEAYQGYGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       280 ~l~r~~~~~p~~~~~~~~~~~~l~~lqg~~gl~~aG~~~g~g~~E~av~SG~~aA~~ll~  339 (602)
                      ..++|+++.|......      .......+++++||||+..+.+++|+.||..||+.|+.
T Consensus       272 ~~~~w~~a~~~~~~~~------~~~~~~~~~v~l~GDa~~g~gv~~A~~sG~~aA~~I~~  325 (336)
T 3kkj_A          272 LAHRWLYARPAGAHEW------GALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLE  325 (336)
T ss_dssp             EEEEEEEEEESSCCCC------SSEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHHHH
T ss_pred             eccceeecccccccCc------cceeeCCCCEEEEecccCCcCHHHHHHHHHHHHHHHHH
Confidence            4678988766432210      01123568999999999666689999999999999854

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=93.18  E-value=0.14  Score=53.64  Aligned_cols=49  Identities=14%  Similarity=0.137  Sum_probs=43.6

Q ss_pred             cCCCCCeEEEEecCchHHHHHHH-hccC--CEEEEEcCCHHHHHHHHHHHHH
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVV-RQTG--CNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la-~~~g--~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+++++.|+|||++.|..+..++ +..+  ++|++++.+++..+..+++++.
T Consensus       223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            56899999999999999999988 4333  7999999999999999999987

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.16  E-value=0.11  Score=53.27  Aligned_cols=50  Identities=26%  Similarity=0.365  Sum_probs=43.5

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+..++++|++||-+|||. |.+++.+|+..|++|++++.+++.++.+++.
T Consensus       182 ~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          182 VEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             TTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc
Confidence            3567889999999999985 8888888888899999999999999988653

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=93.09  E-value=0.15  Score=50.35  Aligned_cols=62  Identities=11%  Similarity=-0.043  Sum_probs=45.8

Q ss_pred             HHHHHHHHHcc--CCCCCeEEEEecCchHHHHHHHhc------cCCEEEEEcCCH-------------------------
Q 036521          537 RKHSLQIEKAR--VSKGHGVLEIGCGWGTFAIEVVRQ------TGCNYTGITLSA-------------------------  583 (602)
Q Consensus       537 ~~~~~l~~~l~--l~~g~~vLDiGcG~G~~~~~la~~------~g~~v~gid~S~-------------------------  583 (602)
                      ..+..+++.+.  -.|| +||||||..|..++.+|+-      .+.+|+++|..+                         
T Consensus        92 ~~L~~l~~~v~~~~~pg-~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~  170 (282)
T 2wk1_A           92 ENIRQCVEDVIGNNVPG-DLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVL  170 (282)
T ss_dssp             HHHHHHHHHHHHTTCCC-EEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHH
T ss_pred             HHHHHHHHHHHhcCCCC-cEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccc
Confidence            34445555543  3355 9999999999999998764      167899999642                         


Q ss_pred             -HHHHHHHHHHHHcCCC
Q 036521          584 -EQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       584 -~~l~~a~~~~~~~gl~  599 (602)
                       ..++.++++.++.|+.
T Consensus       171 ~~~~~~ar~n~~~~gl~  187 (282)
T 2wk1_A          171 AVSEEEVRRNFRNYDLL  187 (282)
T ss_dssp             CCCHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHHHcCCC
Confidence             1478899999999984

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.09  E-value=0.13  Score=52.44  Aligned_cols=50  Identities=20%  Similarity=0.173  Sum_probs=44.0

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      ++..++++|++||-+|+|. |.+++.+|+..|+ +|+++|.+++.++.+++.
T Consensus       159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          159 AELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            4778899999999999985 8888889988898 899999999999888764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=93.03  E-value=0.13  Score=50.10  Aligned_cols=41  Identities=17%  Similarity=0.118  Sum_probs=30.4

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc--------c-----CCEEEEEcCCH---HHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ--------T-----GCNYTGITLSA---EQLKYA  589 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~--------~-----g~~v~gid~S~---~~l~~a  589 (602)
                      +++.+|||||||+|..++.+++.        .     ..++++++..+   ++++.|
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a  115 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALA  115 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHH
Confidence            45579999999999999886542        1     14899999765   666633

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=92.87  E-value=0.17  Score=54.31  Aligned_cols=55  Identities=13%  Similarity=0.058  Sum_probs=46.6

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+|+++++|++|+.+++++.|.+.+|+++.+|.||+|+-.
T Consensus       223 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~  277 (499)
T 1xdi_A          223 ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGS  277 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCC
Confidence            3566777888888899999999999999877778888888878999999999743

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=92.72  E-value=0.18  Score=54.79  Aligned_cols=56  Identities=18%  Similarity=0.106  Sum_probs=47.6

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.|.+.+.+.|.+|+++++|++|..+++++ .|++.+|+++.||.||+|+=.
T Consensus       219 ~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~  275 (549)
T 3nlc_A          219 LVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGH  275 (549)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCT
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCC
Confidence            35678888888888899999999999999887765 477888888999999999843

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.65  E-value=0.15  Score=52.26  Aligned_cols=50  Identities=24%  Similarity=0.356  Sum_probs=44.4

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCCE-EEEEcCCHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQLKYAEMK  592 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~-v~gid~S~~~l~~a~~~  592 (602)
                      ++..++++|++||-+|+|. |.+++.+|+..|++ |+++|.|++.++.+++.
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            4677899999999999985 88888899888997 99999999999999876

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.61  E-value=0.18  Score=53.96  Aligned_cols=56  Identities=14%  Similarity=0.053  Sum_probs=47.7

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.+.+.+.++|.+|+++++|.+|+.+++++.|++.+|+++.+|.||+|+..
T Consensus       231 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~  286 (484)
T 3o0h_A          231 DYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGR  286 (484)
T ss_dssp             CHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCC
Confidence            34567777777777799999999999999988888888888888999999999853

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=92.55  E-value=0.13  Score=53.03  Aligned_cols=50  Identities=20%  Similarity=0.357  Sum_probs=42.6

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||-+|+|. |.+++.+|+..|+ +|+++|.|++.++.+++
T Consensus       184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            34567889999999999975 7788888887898 89999999999988864

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=92.53  E-value=0.12  Score=53.19  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=42.6

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||-+|+|. |.+++.+|+..|+ +|+++|.|++.++.+++
T Consensus       183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            44567889999999999984 7788888887898 89999999999888864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=92.45  E-value=0.14  Score=52.91  Aligned_cols=50  Identities=26%  Similarity=0.365  Sum_probs=42.6

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||-+|+|. |.+++.+|+..|+ +|+++|.|++.++.+++
T Consensus       187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            44567889999999999984 7888888888898 89999999999888864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.40  E-value=0.12  Score=52.96  Aligned_cols=49  Identities=18%  Similarity=0.211  Sum_probs=42.1

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +..+++++|++||-+|+|. |.+++.+|+..|++|++++.|++.++.+++
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          172 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            4457899999999999874 777888888789999999999999988875

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=92.40  E-value=0.19  Score=52.07  Aligned_cols=63  Identities=13%  Similarity=-0.063  Sum_probs=51.3

Q ss_pred             HhHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeE--EEEeCCCcEEecCEEEEecCh-HHHHhhcc
Q 036521          134 HSYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGR--TEVRGDGFQGFYDGCIMAVHA-PDALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv--~v~~~~g~~~~ad~VI~A~p~-~~a~~ll~  196 (602)
                      ..+.+.|.+.+.+. |.+|+++++|++++.++++|  .|++.+|+++.+|.||.|+=. ....+.+.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg  173 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLL  173 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTS
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhC
Confidence            46778888888776 78999999999999988888  888888888999999999833 33445554

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.39  E-value=0.23  Score=52.93  Aligned_cols=56  Identities=21%  Similarity=0.047  Sum_probs=47.6

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.+.+.+.++|.+++++++|.+|+.+++++.|+..+|+++.+|.||+|+..
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~  256 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGV  256 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence            45677788888888899999999999999877778887778888999999999853

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=92.29  E-value=0.29  Score=51.05  Aligned_cols=55  Identities=15%  Similarity=0.027  Sum_probs=46.3

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ...+.+.+.+.+.++|.+|+++++|.+|..+++++ .|.+.+|+++.||.||+|+.
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G  248 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIG  248 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCC
Confidence            35667777788888899999999999999876666 67788888899999999985

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.29  E-value=0.22  Score=51.25  Aligned_cols=50  Identities=22%  Similarity=0.321  Sum_probs=43.7

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      ++..++++|++||-+|+|. |.+++.+|+..|+ +|+++|.+++.++.+++.
T Consensus       175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            4677899999999999985 8888888888898 999999999999888763

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=92.27  E-value=0.15  Score=52.59  Aligned_cols=50  Identities=20%  Similarity=0.359  Sum_probs=42.5

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||-+|+|. |.+++.+|+..|+ +|+++|.|++.++.+++
T Consensus       183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            34567889999999999985 7788888887898 89999999999988864

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.19  E-value=0.25  Score=50.10  Aligned_cols=49  Identities=22%  Similarity=0.378  Sum_probs=41.8

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +...++++|++||-+|+| .|..++.+|+..|++|++++.|++.++.+++
T Consensus       157 l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            445578999999999997 4788888888789999999999999988864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=92.16  E-value=0.15  Score=52.61  Aligned_cols=50  Identities=18%  Similarity=0.317  Sum_probs=42.6

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||-+|+|. |.+++.+|+..|+ +|+++|.|++.++.+++
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            34567889999999999885 7788888887898 89999999999998875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.13  E-value=0.1  Score=53.00  Aligned_cols=51  Identities=12%  Similarity=0.148  Sum_probs=44.7

Q ss_pred             HHHHHccCCCCCeEEEEecC--chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG--~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+.+.+++++|++||-+|||  .|..+..+|+..|++|++++.|++.++.+++
T Consensus       135 ~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             HHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            44567889999999999997  7888888888889999999999999988876

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=92.05  E-value=0.28  Score=51.92  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=47.4

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.+.+.+.++|.+|+++++|++|+.+++++.|.+.+|+++.+|.||+|+-.
T Consensus       207 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~  262 (455)
T 2yqu_A          207 DLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGR  262 (455)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCC
Confidence            45677778888877799999999999999888888888777878999999999753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=91.87  E-value=0.24  Score=45.85  Aligned_cols=48  Identities=23%  Similarity=0.254  Sum_probs=38.9

Q ss_pred             HHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +..++++|++||.+|+  |.|..+..+++..|++|++++.+++.++.+++
T Consensus        32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            4568899999999994  56777777777679999999999998877653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=91.83  E-value=0.35  Score=50.28  Aligned_cols=56  Identities=13%  Similarity=0.063  Sum_probs=46.9

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.+.+.+.++|.+++++++|.+|..+++++ .|.+.+|+++.+|.||+|+..
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence            45677788888888899999999999999877665 577888888999999999853

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=91.76  E-value=0.12  Score=51.88  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=42.5

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ++..++++|++||-+|+| .|.+++.+|+..|++|++++ |++.++.+++
T Consensus       135 l~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~  183 (315)
T 3goh_A          135 FEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK  183 (315)
T ss_dssp             HTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH
Confidence            377889999999999997 48888889988899999999 9999888866

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=91.66  E-value=0.37  Score=48.29  Aligned_cols=55  Identities=9%  Similarity=0.027  Sum_probs=45.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+.+.+++++++|.+|..+++.+.|.+.+|+++.+|+||+|+=.
T Consensus        65 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~  119 (335)
T 2zbw_A           65 KDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGV  119 (335)
T ss_dssp             HHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCC
Confidence            4566777777766688999999999999887788888888878999999999843

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=91.64  E-value=0.26  Score=50.04  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=39.2

Q ss_pred             cCCCCCeEEEEecCc-hHHHHHHHhcc--CCEEEEEcCCHHHHHHHHH
Q 036521          547 RVSKGHGVLEIGCGW-GTFAIEVVRQT--GCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~-G~~~~~la~~~--g~~v~gid~S~~~l~~a~~  591 (602)
                      ++ +|++||-+|+|. |.+++.+|+..  |++|++++.|++.++.+++
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            77 999999999985 77888888887  9999999999999988875

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=91.52  E-value=0.14  Score=52.88  Aligned_cols=50  Identities=24%  Similarity=0.358  Sum_probs=43.2

Q ss_pred             HHHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||-+|+| .|.+++.+|+..|+ +|+++|.|++.++.|++
T Consensus       185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            4566789999999999998 48888888888898 89999999999988864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=91.42  E-value=0.25  Score=53.40  Aligned_cols=54  Identities=15%  Similarity=0.169  Sum_probs=45.7

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe----EEEEeCCCc-EEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG----RTEVRGDGF-QGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g----v~v~~~~g~-~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.+|+++++|++|..++++    +.|.+.+|+ ++.+|.||+|+-
T Consensus       255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G  313 (523)
T 1mo9_A          255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  313 (523)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcC
Confidence            456778888888889999999999999986666    778888886 789999999984

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=91.39  E-value=0.2  Score=50.67  Aligned_cols=48  Identities=25%  Similarity=0.461  Sum_probs=42.2

Q ss_pred             HHHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYA  589 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a  589 (602)
                      +.+..++++|++||-+||  |.|..+..+++..|++|++++.|++.++.+
T Consensus       141 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  190 (336)
T 4b7c_A          141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFL  190 (336)
T ss_dssp             HHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            346778999999999998  578888888887899999999999988887

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=91.32  E-value=0.38  Score=51.06  Aligned_cols=54  Identities=20%  Similarity=0.198  Sum_probs=46.4

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc-EEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF-QGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~-~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.+++++++|.+|..+++++.|++.+|+ ++.+|.||+|+.
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G  261 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVG  261 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCC
Confidence            356677778888889999999999999987778888888887 799999999974

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=91.27  E-value=0.38  Score=50.90  Aligned_cols=55  Identities=16%  Similarity=0.098  Sum_probs=46.6

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.+.+.+.++|.+|+++++|++|+..++++.|.+++| ++.+|.||+|+.-
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~  242 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNL  242 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCC
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCC
Confidence            356778888888888999999999999998777887777777 7999999999753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=91.27  E-value=0.32  Score=48.95  Aligned_cols=54  Identities=13%  Similarity=0.055  Sum_probs=45.0

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+.|.+++++++|++|...+++|. |.+.+| ++.||+||+|+=.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~  130 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCC
Confidence            45566666666666889999999999999999998 988888 7999999999854

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=91.21  E-value=0.3  Score=50.43  Aligned_cols=49  Identities=31%  Similarity=0.388  Sum_probs=41.8

Q ss_pred             HHHcc-CCCCCeEEEEecC-chHHHHHHHhccC-CEEEEEcCCHHHHHHHHH
Q 036521          543 IEKAR-VSKGHGVLEIGCG-WGTFAIEVVRQTG-CNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~-l~~g~~vLDiGcG-~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~  591 (602)
                      ++.++ +++|++||-+||| .|.+++.+|+..| ++|++++.|++.++.+++
T Consensus       187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          187 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             HHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence            35678 8999999999987 4778888888789 599999999999988864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=91.20  E-value=0.33  Score=50.14  Aligned_cols=54  Identities=15%  Similarity=0.116  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecChH
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      .+.+.|.+.+.+.|.+|+.+++|++|..++++ +.|.+.+| ++.+|.||+|+-+.
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~  229 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGH  229 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchh
Confidence            67788888888889999999999999987666 46777777 79999999999553

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=90.97  E-value=0.44  Score=51.06  Aligned_cols=55  Identities=18%  Similarity=0.003  Sum_probs=46.5

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+|+++++|++|..+++++.|+..+|+++.+|.||+|+..
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~  280 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  280 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCC
Confidence            3466777888888899999999999998877777788888888999999999853

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=90.97  E-value=0.3  Score=49.37  Aligned_cols=50  Identities=24%  Similarity=0.397  Sum_probs=41.6

Q ss_pred             HHHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||..||  |.|..+..+++..|++|++++.+++.++.+++
T Consensus       137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~  188 (333)
T 1v3u_A          137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ  188 (333)
T ss_dssp             HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            346678899999999998  57777777777779999999999999888743

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=90.82  E-value=0.42  Score=51.16  Aligned_cols=55  Identities=20%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+|+++++|.+|+.++++ +.|++.+|+++.+|.||+|+..
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  286 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  286 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence            456777888888889999999999999987654 7788888878999999999743

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=90.68  E-value=0.77  Score=45.47  Aligned_cols=45  Identities=24%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             CCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .-++||-||-|.|+.+..+.+.. ..+|+.|||+++.++.|++...
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp  128 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP  128 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCc
Confidence            34699999999999999999874 4699999999999999998754

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=90.65  E-value=0.39  Score=48.80  Aligned_cols=49  Identities=24%  Similarity=0.520  Sum_probs=41.8

Q ss_pred             HHHccCCCCCeEEEEecC--chHHHHHHHhcc-CCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG--WGTFAIEVVRQT-GCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG--~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~  591 (602)
                      +++.++++|++||-+|+|  .|..+..+++.. |++|+++|.|++.++.+++
T Consensus       163 l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          163 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            355788999999999998  677777888777 9999999999999988864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=90.65  E-value=0.38  Score=50.19  Aligned_cols=54  Identities=22%  Similarity=0.211  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      .+.+.+.+.+.++|.+++++++|.+|..++....|++.+|+++.+|.||+|+..
T Consensus       186 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~  239 (410)
T 3ef6_A          186 RIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGA  239 (410)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence            455667777777799999999999998766445778888888999999999854

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=90.61  E-value=0.49  Score=50.74  Aligned_cols=54  Identities=20%  Similarity=0.148  Sum_probs=45.4

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.+|+++++|.+|+.++++ +.|++.+|+++.+|.||+|+.
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G  289 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIG  289 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCC
Confidence            456777888888889999999999999987654 778788887899999999974

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=90.54  E-value=0.39  Score=48.76  Aligned_cols=45  Identities=22%  Similarity=0.415  Sum_probs=40.0

Q ss_pred             cCCCCCeEEEEecCc-hHHHHHHHhcc-CCEEEEEcCCHHHHHHHHH
Q 036521          547 RVSKGHGVLEIGCGW-GTFAIEVVRQT-GCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~-G~~~~~la~~~-g~~v~gid~S~~~l~~a~~  591 (602)
                      .+++|++||-+|+|. |.+++.+|+.. +++|+++|.|++.++.+++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            688999999999985 88888888875 7899999999999998865

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=90.49  E-value=0.37  Score=50.69  Aligned_cols=56  Identities=16%  Similarity=0.116  Sum_probs=46.4

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEe---------------cCCeE-EEEeCCCcEE--ecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQ---------------YDEGR-TEVRGDGFQG--FYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~---------------~~~gv-~v~~~~g~~~--~ad~VI~A~p~~  189 (602)
                      ...+.+.|.+.+.++|.+|+.+++|++|..               +++++ .|.+.+| ++  .||.||+|+-+.
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~  253 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVW  253 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcC
Confidence            347888888888888999999999999988               55554 6777777 68  999999999665

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=90.43  E-value=0.44  Score=50.38  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=44.8

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.+++++++|.+|+.++++ +.|++.+|+++.+|.||+|+-
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G  262 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  262 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCC
Confidence            356677777777779999999999999987655 778888887899999999974

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=90.18  E-value=0.48  Score=48.47  Aligned_cols=46  Identities=24%  Similarity=0.390  Sum_probs=39.5

Q ss_pred             ccCCCCCeEEEEecC-chHHHHHHHhcc-CCEEEEEcCCHHHHHHHHH
Q 036521          546 ARVSKGHGVLEIGCG-WGTFAIEVVRQT-GCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       546 l~l~~g~~vLDiGcG-~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~  591 (602)
                      .++++|++||-+|+| .|.+++.+|+.. |++|+++|.|++.++.+++
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~  229 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER  229 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            788999999999986 466677778877 9999999999999888864

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=90.17  E-value=0.44  Score=49.30  Aligned_cols=51  Identities=18%  Similarity=-0.001  Sum_probs=44.3

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ..+.+.|.+.+.  +.+|+++++|++|+.++++|.|++.+|+++.+|.||.|.
T Consensus        99 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  149 (397)
T 2vou_A           99 DSIYGGLYELFG--PERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGAD  149 (397)
T ss_dssp             HHHHHHHHHHHC--STTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECC
T ss_pred             HHHHHHHHHhCC--CcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECC
Confidence            456677777764  789999999999999988999998888889999999997

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=90.12  E-value=0.48  Score=50.21  Aligned_cols=55  Identities=20%  Similarity=0.160  Sum_probs=46.4

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEE-eCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEV-RGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~-~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.+.+.+.++|.+|+++++|.+|+.++++ +.|. +.+|+ +.+|.||+|+..
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~  266 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGR  266 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCE
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCc
Confidence            4567788888888889999999999999987666 6788 88886 999999999853

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=90.11  E-value=0.28  Score=49.92  Aligned_cols=50  Identities=22%  Similarity=0.338  Sum_probs=41.4

Q ss_pred             HHHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+..+++++|++||.+|+  |.|..+..+++..|++|++++.|++.++.+++
T Consensus       161 ~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          161 ALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence            345568899999999999  57888888887779999999999988877754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=89.93  E-value=0.48  Score=50.52  Aligned_cols=54  Identities=13%  Similarity=0.020  Sum_probs=44.2

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe--EEEEeCCC-cEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG--RTEVRGDG-FQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g--v~v~~~~g-~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.+++++++|.+|+.++++  +.|++.+| +++.+|.||+|+.
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G  282 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIG  282 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCC
Confidence            456677777787779999999999999886655  67877888 6789999999974

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=89.87  E-value=0.34  Score=49.20  Aligned_cols=49  Identities=18%  Similarity=0.271  Sum_probs=42.0

Q ss_pred             HHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+..++++|++||-+||  |.|..+..+++..|++|++++.|++.++.+++
T Consensus       148 ~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~  198 (345)
T 2j3h_A          148 YEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKT  198 (345)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            35678899999999997  57888888888789999999999999888763

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=89.68  E-value=0.53  Score=47.82  Aligned_cols=53  Identities=13%  Similarity=0.013  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      .+.+.+.+.+.+.|.+|+++++|++|..++++|.|.+.+| ++.||+||+|+=.
T Consensus        89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~  141 (369)
T 3d1c_A           89 TYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGD  141 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCC
Confidence            3444444444445889999999999998877899988777 6899999999854

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=89.66  E-value=0.58  Score=47.45  Aligned_cols=51  Identities=20%  Similarity=0.305  Sum_probs=40.3

Q ss_pred             HHHHccCCCCCeEEEEecCch-HHHHHHHhc-cCCEEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGWG-TFAIEVVRQ-TGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G-~~~~~la~~-~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .++..++++|++||-+|+|.+ .++..++++ .|++|+++|.|++-++.+++.
T Consensus       155 ~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~  207 (348)
T 4eez_A          155 AIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI  207 (348)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT
T ss_pred             eecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc
Confidence            456678899999999999864 555566665 588999999999988877653

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=89.64  E-value=0.43  Score=48.43  Aligned_cols=46  Identities=24%  Similarity=0.326  Sum_probs=41.0

Q ss_pred             ccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          546 ARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       546 l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .++++|++||-+|+  |.|..+..+++..|++|++++.+++.++.+++
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            57889999999998  68888888888789999999999999988864

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=89.62  E-value=0.36  Score=48.57  Aligned_cols=50  Identities=22%  Similarity=0.256  Sum_probs=42.4

Q ss_pred             HHHHccCCCCCeEEEEe-c-CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIG-C-GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiG-c-G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||-+| + |.|..+..+|+..|++|++++.|++.++.+++
T Consensus       132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34556889999999999 4 46888888888889999999999999998875

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=89.61  E-value=0.58  Score=48.46  Aligned_cols=51  Identities=18%  Similarity=0.061  Sum_probs=44.3

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ..+.+.|.+.+.+  .+|+++++|++|+.++++|.|++.+|+++.+|.||.|.
T Consensus       127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~Ad  177 (407)
T 3rp8_A          127 AELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAAD  177 (407)
T ss_dssp             HHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECC
T ss_pred             HHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECC
Confidence            4566777777753  78999999999999999999999999889999999997

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=89.55  E-value=0.72  Score=48.66  Aligned_cols=56  Identities=16%  Similarity=0.171  Sum_probs=44.2

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.+.+.+.++|.+|+++++|++|+..++++.....+|+++.+|.||+|+..
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~  245 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGF  245 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCC
Confidence            34677788888888899999999999998766666533336778999999999854

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=89.51  E-value=0.39  Score=48.81  Aligned_cols=48  Identities=23%  Similarity=0.280  Sum_probs=40.8

Q ss_pred             HHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      ++.+++ +|++||-+|+|. |..++.+|+..|+ +|++++.|++.++.+++
T Consensus       161 l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  210 (348)
T 2d8a_A          161 VLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK  210 (348)
T ss_dssp             HTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred             HHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            356778 999999999974 7778888887898 99999999999888865

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=89.36  E-value=0.5  Score=49.20  Aligned_cols=47  Identities=19%  Similarity=0.258  Sum_probs=40.8

Q ss_pred             ccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          546 ARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      .++++|++||-+|+|. |.+++.+|+..|+ +|+++|.|++.++.+++.
T Consensus       209 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          209 GGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            3688999999999974 7788888888898 999999999999988754

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=89.23  E-value=0.6  Score=47.81  Aligned_cols=49  Identities=27%  Similarity=0.437  Sum_probs=42.1

Q ss_pred             HHHccCCCCCeEEEEe--cCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiG--cG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+..++++|++||-+|  .|.|..++.+|+..|++|++++.+++.++.+++
T Consensus       156 ~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          156 KELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             HHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            3456789999999999  457888999998889999999999999888865

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=89.23  E-value=0.72  Score=46.78  Aligned_cols=55  Identities=13%  Similarity=0.019  Sum_probs=45.6

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCC-eEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDE-GRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~-gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+.+.+++++++|++|...++ .|.|.+.+|+++.+|.||+|+=.
T Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~  129 (360)
T 3ab1_A           74 IDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGL  129 (360)
T ss_dssp             HHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCC
Confidence            45677777777766889999999999998765 68888888878999999999844

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.16  E-value=0.69  Score=49.62  Aligned_cols=55  Identities=18%  Similarity=0.152  Sum_probs=46.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcE-EecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQ-GFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~-~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.|.++|.+|+++++|.+|+.++++ +.|...+|++ +.+|.||+|+.-
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~  273 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR  273 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC
Confidence            467778888888889999999999999886544 7787788877 899999999854

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=89.11  E-value=0.61  Score=53.51  Aligned_cols=57  Identities=18%  Similarity=0.022  Sum_probs=47.8

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEecChHH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAVHAPD  190 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~p~~~  190 (602)
                      ...+...|++.+.++|.+|+.+++|++|..+++++ .|.+.+| ++.||+||+|+-+..
T Consensus       150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            34688889888888899999999999999887776 5777777 799999999995543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=89.11  E-value=0.51  Score=48.14  Aligned_cols=48  Identities=29%  Similarity=0.313  Sum_probs=40.8

Q ss_pred             HHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +..++++|++||-+|+  |.|..+..+++..|++|++++.+++.++.+++
T Consensus       164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  213 (351)
T 1yb5_A          164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ  213 (351)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence            4678899999999997  56778888888789999999999998887654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=89.07  E-value=0.3  Score=49.60  Aligned_cols=51  Identities=20%  Similarity=0.389  Sum_probs=43.7

Q ss_pred             HHHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      +.+..++++|++||-+|+  |.|..+..+|+..|++|++++.+++.++.+++.
T Consensus       151 l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  203 (342)
T 4eye_A          151 YARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV  203 (342)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            346678899999999997  578888889988899999999999988888763

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=89.01  E-value=0.62  Score=46.34  Aligned_cols=54  Identities=13%  Similarity=0.081  Sum_probs=45.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCC-eEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDE-GRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~-gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+.+.+++++++|.++...++ .|.|.+.+|+ +.+|+||+|+=.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           67 QELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             HHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence            56778888888777899999999999998876 7888888885 999999999844

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=88.99  E-value=0.78  Score=43.57  Aligned_cols=54  Identities=15%  Similarity=0.104  Sum_probs=43.1

Q ss_pred             HhHHHHHHHHHhcC-CCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESL-GCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+. |.+++ +++|++|..+++++ .|.+.+|+++.+|.||+|+-.
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~  123 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGS  123 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCC
Confidence            45667788888765 77888 67999999887775 577777878999999999855

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=88.98  E-value=0.82  Score=49.62  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=50.4

Q ss_pred             cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      .+--.++.+.+.+.|.++|.++++++.|.+++..++++.|...+++.+.+|.|++|+
T Consensus       259 ~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAv  315 (542)
T 4b1b_A          259 RGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAI  315 (542)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECS
T ss_pred             cccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcc
Confidence            444567888899999999999999999999999999999988888788999999996

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=88.95  E-value=0.47  Score=49.10  Aligned_cols=53  Identities=11%  Similarity=-0.063  Sum_probs=43.6

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.|.+.+.  +.+|+++++|++|+.++++|+|++.+|+++.||.||.|.=.
T Consensus       128 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~  180 (398)
T 2xdo_A          128 NDLRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGG  180 (398)
T ss_dssp             HHHHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCT
T ss_pred             HHHHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCc
Confidence            345666766664  46899999999999988889999888888999999999843

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=88.73  E-value=0.46  Score=50.09  Aligned_cols=54  Identities=13%  Similarity=0.067  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC---Cc---EEecCEEEEecCh
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD---GF---QGFYDGCIMAVHA  188 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~---g~---~~~ad~VI~A~p~  188 (602)
                      .+.+.+.+...+.+..|+++++|++|...+++|.|++.+   |+   ++.||.||+|+=.
T Consensus       116 ~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~  175 (447)
T 2gv8_A          116 TIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGH  175 (447)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCS
T ss_pred             HHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCC
Confidence            455555555544466899999999999988888887654   65   6899999999854

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=88.45  E-value=0.52  Score=47.58  Aligned_cols=48  Identities=27%  Similarity=0.374  Sum_probs=40.9

Q ss_pred             HHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +..++++|++||-+|+  |.|..+..+|+..|++|++++.+++.++.+++
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4457899999999994  57888888888789999999999999988765

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=88.36  E-value=0.87  Score=47.77  Aligned_cols=55  Identities=20%  Similarity=0.157  Sum_probs=44.2

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEe--cCCeE-EEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQ--YDEGR-TEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~--~~~gv-~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+++++++|.+|..  .++++ .|.+.+|+++.+|.||+|+..
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~  248 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL  248 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence            45666777777777999999999999987  44555 677778888999999999854

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=88.23  E-value=0.83  Score=45.11  Aligned_cols=54  Identities=7%  Similarity=-0.066  Sum_probs=44.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+.|.++++ ++|.+|..+++.+.|.+.+|+.+.+|+||+|+=.
T Consensus        70 ~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~  123 (323)
T 3f8d_A           70 SDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGV  123 (323)
T ss_dssp             HHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCC
Confidence            45677777777777889999 9999999988889998888878999999999843

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=88.00  E-value=0.49  Score=48.26  Aligned_cols=50  Identities=28%  Similarity=0.335  Sum_probs=42.3

Q ss_pred             HHHHccCCCCCeEEEEe-c-CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIG-C-GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiG-c-G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|++||-+| + |.|..++.+|+..|++|++++.|++.++.+++
T Consensus       159 l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  210 (353)
T 4dup_A          159 LFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER  210 (353)
T ss_dssp             HTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            33667889999999994 3 46888888888889999999999999998876

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=87.96  E-value=0.79  Score=48.60  Aligned_cols=54  Identities=17%  Similarity=0.131  Sum_probs=44.5

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC-C--Cc--EEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG-D--GF--QGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~-~--g~--~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.+|+++++|++|..+++++.|+.. +  |+  ++.+|.||+|+-
T Consensus       210 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G  268 (464)
T 2eq6_A          210 PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVG  268 (464)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCC
Confidence            456677778888889999999999999988777777654 5  65  789999999974

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=87.90  E-value=0.83  Score=46.78  Aligned_cols=60  Identities=15%  Similarity=0.065  Sum_probs=46.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh-HHHHhhcc
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA-PDALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~-~~a~~ll~  196 (602)
                      ..+.+.|.+.+.+.|.+|+++++|++|+.  ++ .|++.+|+++.+|.||.|+=. ....+.+.
T Consensus       107 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~  167 (379)
T 3alj_A          107 SHLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQTGEVLEADLIVGADGVGSKVRDSIG  167 (379)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEETTSCEEECSEEEECCCTTCHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEECCCCEEEcCEEEECCCccHHHHHHhc
Confidence            45667777777777899999999999988  45 777788878999999999833 33444444

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=87.84  E-value=0.83  Score=49.86  Aligned_cols=54  Identities=13%  Similarity=-0.098  Sum_probs=42.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecC-Ce---EEEEeCCCc--EEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYD-EG---RTEVRGDGF--QGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~-~g---v~v~~~~g~--~~~ad~VI~A~p  187 (602)
                      ..+.+.|.+.+.+.|.+|+++++|++|..++ +.   |.+...+|+  ++.||.||+|+=
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtG  314 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATG  314 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCC
Confidence            5678888888888899999999999999876 43   344443665  578999999983

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=87.82  E-value=1.1  Score=48.81  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=45.2

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEe-------------------cCCeEEEEeCCCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQ-------------------YDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~-------------------~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.++++++.|.+|..                   .++++.++..+|+++.+|.||+|+.
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G  264 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIG  264 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcC
Confidence            45667777778888999999999999987                   3567778778888899999999985

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=87.78  E-value=0.88  Score=46.77  Aligned_cols=34  Identities=12%  Similarity=0.380  Sum_probs=25.5

Q ss_pred             HHHHHHHHHccCCC-----CCeEEEEecCchHHHHHHHh
Q 036521          537 RKHSLQIEKARVSK-----GHGVLEIGCGWGTFAIEVVR  570 (602)
Q Consensus       537 ~~~~~l~~~l~l~~-----g~~vLDiGcG~G~~~~~la~  570 (602)
                      .+++..++.+.+.+     ..+|+|+|||+|..++.+..
T Consensus        34 ~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~   72 (374)
T 3b5i_A           34 HLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIID   72 (374)
T ss_dssp             HHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHH
Confidence            44555566666654     47899999999999998754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=87.77  E-value=0.36  Score=47.96  Aligned_cols=46  Identities=24%  Similarity=0.271  Sum_probs=39.5

Q ss_pred             HccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          545 KARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       545 ~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .. +++|++||-+|+  |.|..+..+|+..|++|++++.+++.++.+++
T Consensus       121 ~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  168 (302)
T 1iz0_A          121 AQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA  168 (302)
T ss_dssp             TT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             hc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            44 889999999998  46888888888789999999999998888754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=87.73  E-value=0.28  Score=51.07  Aligned_cols=55  Identities=13%  Similarity=-0.071  Sum_probs=40.8

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCcee---------EEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVC---------SVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~---------~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+...|.+.+.+.|.+|+.+++|+         +|..++++|.|.+.+| ++.||.||+|+=+.
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~  235 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAA  235 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCcc
Confidence            5688888888888899999999999         8887777787767666 79999999999554

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=87.70  E-value=1.1  Score=44.24  Aligned_cols=54  Identities=15%  Similarity=0.035  Sum_probs=44.2

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+.|.++++ ++|.+|..++++|.|.+.+|+++.+|.||+|+=+
T Consensus        59 ~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~  112 (311)
T 2q0l_A           59 LDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG  112 (311)
T ss_dssp             HHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC
Confidence            45667777777667889988 8999999888888887777878999999999853

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=87.69  E-value=0.87  Score=46.69  Aligned_cols=45  Identities=20%  Similarity=0.206  Sum_probs=39.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .+..+||-||-|.|+.+..+.+....+|+.|||+++.++.|++..
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yf  248 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYM  248 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhc
Confidence            345799999999999999999875679999999999999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=87.64  E-value=0.6  Score=49.80  Aligned_cols=56  Identities=14%  Similarity=0.004  Sum_probs=45.5

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC----CcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD----GFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~----g~~~~ad~VI~A~p~  188 (602)
                      ...+.+.+.+.|.++|.+|+++++|.+|+.+++++.|+..+    |+++.+|.||+|+..
T Consensus       225 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~  284 (482)
T 1ojt_A          225 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  284 (482)
T ss_dssp             CHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             CHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence            34567788888888899999999999999887777776654    667889999999854

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=87.62  E-value=0.71  Score=50.37  Aligned_cols=55  Identities=7%  Similarity=0.007  Sum_probs=43.3

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecC-Ce---EEEEeCCCc--EEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYD-EG---RTEVRGDGF--QGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~-~g---v~v~~~~g~--~~~ad~VI~A~p  187 (602)
                      -..+.+.|.+.+.+.|.+|+++++|++|..++ +.   |.+...+|+  ++.||.||+|+=
T Consensus       249 ~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtG  309 (566)
T 1qo8_A          249 GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATG  309 (566)
T ss_dssp             HHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecC
Confidence            35677888888888899999999999999876 54   344444675  578999999983

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=87.60  E-value=0.81  Score=48.59  Aligned_cols=55  Identities=20%  Similarity=0.157  Sum_probs=44.6

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC---cEEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG---FQGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g---~~~~ad~VI~A~p  187 (602)
                      ...+.+.+.+.+.++|.+|+++++|.+|+.+++++.|+..++   +++.+|.||+|+.
T Consensus       220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G  277 (476)
T 3lad_A          220 DEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  277 (476)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeC
Confidence            345677788888888999999999999998887777765433   4689999999985

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=87.48  E-value=0.81  Score=48.51  Aligned_cols=55  Identities=11%  Similarity=0.091  Sum_probs=42.9

Q ss_pred             HhHHHHHHHHH-hcCCCeEEeCCceeEEEecCCeEEEEeC--CC--cEEecCEEEEecCh
Q 036521          134 HSYVNKVIALL-ESLGCQIKTGCEVCSVLQYDEGRTEVRG--DG--FQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l-~~~g~~v~l~t~V~~i~~~~~gv~v~~~--~g--~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+ .++|.+|+++++|.+|+.+++++.|...  +|  +++.+|.||+|+..
T Consensus       215 ~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~  274 (468)
T 2qae_A          215 EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR  274 (468)
T ss_dssp             HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc
Confidence            45667777888 7889999999999999987777776654  56  56899999999743

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=87.47  E-value=0.77  Score=47.60  Aligned_cols=63  Identities=13%  Similarity=0.022  Sum_probs=46.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE--EEEeCCCc--EEecCEEEEecCh-HHHHhhcc
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR--TEVRGDGF--QGFYDGCIMAVHA-PDALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv--~v~~~~g~--~~~ad~VI~A~p~-~~a~~ll~  196 (602)
                      ..+.+.|.+.+.+.|.+|+.+++|++|..+++++  .|.+.+|+  ++.||.||.|+=. ....+.+.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g  173 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFG  173 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcC
Confidence            3566677777666699999999999999988775  45567786  5899999999833 23444444

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=87.37  E-value=0.48  Score=40.90  Aligned_cols=54  Identities=9%  Similarity=0.073  Sum_probs=42.9

Q ss_pred             EEecCEEEEecChHHHHhhccC-CCCHHHHhhccCccccce-eEEEecCCCCCCCC
Q 036521          176 QGFYDGCIMAVHAPDALRILGN-QSTFEEKRLLGAFQYVYS-DIFLHRDKNFMPRN  229 (602)
Q Consensus       176 ~~~ad~VI~A~p~~~a~~ll~~-~~~~~~~~~l~~~~y~~~-~~vl~~d~~l~p~~  229 (602)
                      ++.||+||+|+|+.....+... ++++...+++.+++|... -+++.++..+++..
T Consensus         5 ~~~Ad~VIvTvP~~vL~~I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~   60 (130)
T 2e1m_B            5 TWTGDLAIVTIPFSSLRFVKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFT   60 (130)
T ss_dssp             EEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCC
T ss_pred             EEEcCEEEEcCCHHHHhcCcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCC
Confidence            6899999999999998888653 366667888899998664 57888898887654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=87.36  E-value=0.94  Score=47.99  Aligned_cols=54  Identities=13%  Similarity=0.018  Sum_probs=44.8

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+|+++++|.+|..+++.+.|.+++ +++.+|.||+|+-.
T Consensus       216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-~~i~aD~Vv~a~G~  269 (467)
T 1zk7_A          216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTH-GELRADKLLVATGR  269 (467)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEETT-EEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECC-cEEEcCEEEECCCC
Confidence            4577888888888899999999999999877777777664 47899999999854

>3cnu_A Predicted coding region AF_1534; structural GE MCSG, PSI-2, protein structure initiative, midwest center F structural genomics; 1.90A {Archaeoglobus fulgidus dsm 4304} PDB: 3bn8_A*

Probab=87.29  E-value=1.4  Score=36.83  Aligned_cols=66  Identities=11%  Similarity=0.065  Sum_probs=43.0

Q ss_pred             ceEEEe-cCCcEEEecCCccCCCCcEEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCChHhHHHHHHH
Q 036521          376 CLILLE-EVGTTFTFEGTRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMI  445 (602)
Q Consensus       376 ~l~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~  445 (602)
                      ...|.+ .+|......+..  ..+.++|++.... |.+++ .|.++...+||.|++.++|+...+..+..+
T Consensus        40 ~~~l~l~~~G~~~~~~~~~--~~ad~tl~~~~~~-~~~l~-~g~~~~~~a~~~gklki~Gd~~~~~~l~~l  106 (116)
T 3cnu_A           40 EFYVEYKSDGTCEFKEGVH--SSPTFTVVAPPDF-WLAVL-KGQEDPVSGFMMGKYRIEGNIMEAQRLAGV  106 (116)
T ss_dssp             EEEEEECTTSCEEEEESCC--SSCSEEEECCHHH-HHHHH-TTSSCHHHHHHHTSSEEECCHHHHHHHHHH
T ss_pred             EEEEEEccCCeEEEcCCCC--CCCCEEEEEeHHH-HHHHH-cCCCCHHHHHHcCCEEEEcCHHHHHHHHHH
Confidence            344455 677654332221  2467888877655 44453 699999999999999999975545444433

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=87.20  E-value=0.98  Score=45.31  Aligned_cols=48  Identities=17%  Similarity=0.160  Sum_probs=40.8

Q ss_pred             HHccCCCCCeEEEEe--cCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~~vLDiG--cG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +..++++|++||-+|  +|.|..+..+++..|++|++++.+++.++.+++
T Consensus       134 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             HhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            366889999999999  457778888887779999999999999888865

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=87.16  E-value=0.98  Score=49.35  Aligned_cols=54  Identities=11%  Similarity=-0.050  Sum_probs=41.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecC-Ce---EEEEeCCCc--EEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYD-EG---RTEVRGDGF--QGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~-~g---v~v~~~~g~--~~~ad~VI~A~p  187 (602)
                      ..+.+.|.+.+.+.|.+|+++++|++|..++ +.   |.+...+|+  ++.||.||+|+=
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtG  314 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG  314 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCC
Confidence            4677888888888899999999999998766 53   444444664  578999999983

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=87.14  E-value=0.94  Score=48.09  Aligned_cols=55  Identities=13%  Similarity=0.127  Sum_probs=44.3

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEE-----eCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEV-----RGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~-----~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+|+++++|.+|..++++ +.|.     ..+++++.+|.||+|+..
T Consensus       220 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~  280 (474)
T 1zmd_A          220 MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR  280 (474)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC
Confidence            456677788888889999999999999987766 7666     345667899999999853

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=87.13  E-value=0.6  Score=47.60  Aligned_cols=48  Identities=31%  Similarity=0.247  Sum_probs=40.7

Q ss_pred             HHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +..++++|++||-+|+  |.|..+..+++..|++|++++.|++.++.+++
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  205 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK  205 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            5668899999999983  57888888887789999999999999988854

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=87.11  E-value=1  Score=44.32  Aligned_cols=54  Identities=7%  Similarity=-0.012  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecC---CeEEEEeCCCcEEecCEEEEecCh
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYD---EGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~---~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      .+.+.+.+.+.+.+.+++++++|++|..+.   +.+.|.+.+|+++.+|+||+|+=+
T Consensus        57 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~  113 (310)
T 1fl2_A           57 KLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA  113 (310)
T ss_dssp             HHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC
Confidence            566677777766788999999999998653   368888888878999999999843

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=87.06  E-value=0.71  Score=47.09  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=40.1

Q ss_pred             HHHccCC-CCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHH
Q 036521          543 IEKARVS-KGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAE  590 (602)
Q Consensus       543 ~~~l~l~-~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~  590 (602)
                      +...+++ +|++||-+|+| .|.+++.+|+..|++|++++.|++.++.++
T Consensus       172 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~  221 (357)
T 2cf5_A          172 LSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAL  221 (357)
T ss_dssp             HHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHH
T ss_pred             HHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence            4556788 99999999987 477777888878999999999998887775

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=86.94  E-value=0.39  Score=48.72  Aligned_cols=47  Identities=30%  Similarity=0.328  Sum_probs=39.9

Q ss_pred             HccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          545 KARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       545 ~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      .+++ +|++||-+|+|. |..++.+|+..|+ +|++++.|++.++.+++.
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l  208 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY  208 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            6678 999999999874 7778888887899 999999999998887653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=86.88  E-value=0.93  Score=48.62  Aligned_cols=62  Identities=6%  Similarity=-0.099  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc---EEecCEEEEecCh-HHHHhhcc
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF---QGFYDGCIMAVHA-PDALRILG  196 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~---~~~ad~VI~A~p~-~~a~~ll~  196 (602)
                      .+.+.|.+.+.+.|.+|+++++|+++++++++|+|+..++.   ++.+|.||.|.=. ....+.+.
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg  173 (499)
T 2qa2_A          108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAG  173 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccHHHHHcC
Confidence            45566666666668999999999999999899988776653   6899999999733 23444443

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=86.87  E-value=0.95  Score=48.56  Aligned_cols=62  Identities=16%  Similarity=0.032  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCc---EEecCEEEEecCh-HHHHhhcc
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGF---QGFYDGCIMAVHA-PDALRILG  196 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~---~~~ad~VI~A~p~-~~a~~ll~  196 (602)
                      .+.+.|.+.+.+.|.+|+++++|+++++++++|+|+..++.   ++.+|.||.|.=. ....+.+.
T Consensus       107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg  172 (500)
T 2qa1_A          107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAG  172 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchHHHHHcC
Confidence            45566666666668999999999999999999988776553   6899999999733 33444443

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=86.79  E-value=0.98  Score=48.41  Aligned_cols=57  Identities=12%  Similarity=-0.049  Sum_probs=46.0

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe---CCCc--EEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR---GDGF--QGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~---~~g~--~~~ad~VI~A~p~~  189 (602)
                      ...+...+++.+.++|.+|+.+++|+++.++++.+.|.+   .+|+  ++.||.||+|+=+.
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~  209 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPW  209 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChh
Confidence            456788888888888999999999999998876666665   3565  68999999999554

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=86.74  E-value=1.1  Score=45.51  Aligned_cols=50  Identities=20%  Similarity=0.377  Sum_probs=41.6

Q ss_pred             HHHHccCC------CCCeEEEE-ecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVS------KGHGVLEI-GCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~------~g~~vLDi-GcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +.+.++++      +|++||-+ |+| .|.+++.+|+..|++|++++.+++.++.+++
T Consensus       136 l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  193 (346)
T 3fbg_A          136 LFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK  193 (346)
T ss_dssp             HHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH
T ss_pred             HHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            34566777      89999999 565 5888888888789999999999999998876

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=86.25  E-value=1.4  Score=42.86  Aligned_cols=55  Identities=9%  Similarity=-0.112  Sum_probs=43.0

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+.+.-..++++|++|..+++++.|.+.+|+++.+|+||+|+=.
T Consensus        56 ~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~  110 (297)
T 3fbs_A           56 GEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGV  110 (297)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCC
Confidence            4667777777765533333467999999988889999988888999999999844

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=86.02  E-value=1.2  Score=48.32  Aligned_cols=53  Identities=19%  Similarity=0.115  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhcCCC--eEEeCCceeEEEecCC--eEEEEeCCCcEEecCEEEEecCh
Q 036521          136 YVNKVIALLESLGC--QIKTGCEVCSVLQYDE--GRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       136 l~~~la~~l~~~g~--~v~l~t~V~~i~~~~~--gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      +.+.+.+...+.|.  +|+++++|+++..+++  +|.|++.+|+++.||.||+|+=.
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~  145 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL  145 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence            44444443333365  8999999999998765  78999988988999999999853

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=85.99  E-value=1.4  Score=47.93  Aligned_cols=54  Identities=13%  Similarity=-0.025  Sum_probs=44.4

Q ss_pred             HhHHHHHHHHHhcC-CCeEEeCCceeEEEecCCe--EEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESL-GCQIKTGCEVCSVLQYDEG--RTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~-g~~v~l~t~V~~i~~~~~g--v~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.|.+.+.+. |.+|+++ +|++|..++++  +.|.+.+|+++.||.||.|+=.
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~  250 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGF  250 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGG
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCC
Confidence            35777888888777 8999999 99999987666  5677778878999999999844

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=85.97  E-value=1.1  Score=48.22  Aligned_cols=55  Identities=13%  Similarity=0.109  Sum_probs=41.6

Q ss_pred             CcHhHHHHHHHHHhcCCCeEEeCCceeEEEec-CCe---EEEEeCCCc--EEecC-EEEEecC
Q 036521          132 RSHSYVNKVIALLESLGCQIKTGCEVCSVLQY-DEG---RTEVRGDGF--QGFYD-GCIMAVH  187 (602)
Q Consensus       132 G~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~-~~g---v~v~~~~g~--~~~ad-~VI~A~p  187 (602)
                      |...+.+.|.+.+.++|.+|+++++|++|..+ ++.   |.+.. +|+  ++.|| .||+|+=
T Consensus       200 g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~-~g~~~~i~A~k~VVlAtG  261 (510)
T 4at0_A          200 GGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATG  261 (510)
T ss_dssp             TTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEE-TTEEEEEEEEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEE-CCcEEEEEeCCeEEEeCC
Confidence            33478899999888889999999999999987 343   33333 343  47895 9999983

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=85.85  E-value=1.6  Score=46.72  Aligned_cols=55  Identities=11%  Similarity=-0.101  Sum_probs=44.3

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe--EEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG--RTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g--v~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+.+.|.+.+.+.|.+++.+ +|++|..++++  +.|++.+|+++.+|.||.|+=..
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~  229 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFR  229 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcc
Confidence            356677777777779999999 99999986666  67777788789999999998543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=85.63  E-value=1.1  Score=47.44  Aligned_cols=54  Identities=19%  Similarity=0.136  Sum_probs=43.0

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC-CC--cEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG-DG--FQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~-~g--~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.+|+++++|.+|+.+++++.|... +|  +++.+|.||+|+.
T Consensus       212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G  268 (464)
T 2a8x_A          212 ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIG  268 (464)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCC
Confidence            456677777777779999999999999987767776653 45  4689999999974

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=85.62  E-value=0.95  Score=47.75  Aligned_cols=55  Identities=13%  Similarity=0.047  Sum_probs=43.8

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC---CCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG---DGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~---~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+|+++++|.+|+.+++++.|...   +++++.+|.||+|+..
T Consensus       211 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~  268 (455)
T 1ebd_A          211 KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGR  268 (455)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCC
Confidence            456677778888889999999999999988777776643   3456899999999743

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=85.61  E-value=0.96  Score=46.32  Aligned_cols=48  Identities=21%  Similarity=0.255  Sum_probs=39.7

Q ss_pred             HHHccCC-CCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHH
Q 036521          543 IEKARVS-KGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAE  590 (602)
Q Consensus       543 ~~~l~l~-~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~  590 (602)
                      +..++++ +|++||-+|+|. |..++.+|+..|++|++++.|++.++.++
T Consensus       179 l~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  228 (366)
T 1yqd_A          179 LKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEAL  228 (366)
T ss_dssp             HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHH
T ss_pred             HHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4556788 999999999874 67777778778999999999998887765

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=85.57  E-value=0.82  Score=46.35  Aligned_cols=49  Identities=27%  Similarity=0.425  Sum_probs=41.5

Q ss_pred             HHHccCCCCCeEEEEec-C-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGc-G-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+..++++|++||-+|+ | .|..++.+|+..|++|+++ .|++.++.+++.
T Consensus       143 ~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l  193 (343)
T 3gaz_A          143 VDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL  193 (343)
T ss_dssp             TTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc
Confidence            36778899999999993 4 6888888898889999999 899998888653

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=85.51  E-value=1.7  Score=43.63  Aligned_cols=48  Identities=23%  Similarity=0.320  Sum_probs=41.2

Q ss_pred             HHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      +..++++|++||-+|+  |.|..+..+++..|++|++++.+++.++.+++
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK  188 (333)
T ss_dssp             TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4568899999999995  67888888888789999999999998888865

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=85.09  E-value=1.2  Score=44.49  Aligned_cols=53  Identities=23%  Similarity=0.115  Sum_probs=43.0

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+.|.++++++ |.+|...+++|+|.+ +|+++.+|.||+|+=.
T Consensus        70 ~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~  122 (333)
T 1vdc_A           70 VELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGA  122 (333)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCC
Confidence            3566777777766788999987 999998888888887 6778999999999844

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=84.91  E-value=1  Score=48.68  Aligned_cols=63  Identities=19%  Similarity=0.097  Sum_probs=48.0

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCC----eEEEEeCCC---cEEecCEEEEec-ChHHHHhhcc
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDE----GRTEVRGDG---FQGFYDGCIMAV-HAPDALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~----gv~v~~~~g---~~~~ad~VI~A~-p~~~a~~ll~  196 (602)
                      ..+...|.+.+.+.|.+|+++++|++++++++    +|+|+..++   .++.||.||.|. ......+.+.
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lg  190 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESLG  190 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHcC
Confidence            35666777777777999999999999999988    888876654   578999999998 3334445543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=84.88  E-value=1.9  Score=44.73  Aligned_cols=51  Identities=12%  Similarity=0.103  Sum_probs=41.5

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+|+++++|.+|+ + +  .|+..+|+++.+|.||+|+..
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G~  237 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIGV  237 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE-T-T--EEEETTSCEEECSEEEECSCE
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcCC
Confidence            3566777788888899999999999998 3 3  566677878999999999854

>3bkr_A Sterol carrier protein-2 like-3; mosquito, fatty acid, palmitic acid, cholesterol, lipid binding protein; HET: PLM; 1.40A {Aedes aegypti} PDB: 3bks_A*

Probab=84.67  E-value=1.8  Score=36.91  Aligned_cols=46  Identities=13%  Similarity=0.294  Sum_probs=35.4

Q ss_pred             CCcEEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCChHhHHHHHH
Q 036521          397 NLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIM  444 (602)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~  444 (602)
                      .+.++|++.+.. |.+++ .|.+.+-++||.|++.++|+...+..|..
T Consensus        76 ~ad~tlt~~~~d-~~~l~-~G~l~~~~a~~~Gklki~Gd~~~a~kL~~  121 (126)
T 3bkr_A           76 RIDASITIDDND-FYLVA-TKETSFAALIEQGKVDITGNKQAFLTLDE  121 (126)
T ss_dssp             GCCEEEEEEHHH-HHHHH-TTSSCHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred             CCCEEEEEeHHH-HHHHH-cCCCCHHHHHHcCCEEEEcCHHHHHHHhh
Confidence            578999998866 44443 69999999999999999997554544443

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=84.64  E-value=1.5  Score=47.10  Aligned_cols=54  Identities=17%  Similarity=0.105  Sum_probs=43.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe---EEEEeCCCc--EEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG---RTEVRGDGF--QGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g---v~v~~~~g~--~~~ad~VI~A~p  187 (602)
                      ..+.+.|.+.+.+.|.+|+.+++|++|..++++   |.+...+|+  ++.||.||.|+=
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG  169 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASG  169 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCC
Confidence            356677777777779999999999999998775   455566674  689999999983

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=84.63  E-value=1.1  Score=45.73  Aligned_cols=49  Identities=20%  Similarity=0.408  Sum_probs=41.2

Q ss_pred             HHHccCC-----CCCeEEEEe-cC-chHHHHHHHhc-cCCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVS-----KGHGVLEIG-CG-WGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~-----~g~~vLDiG-cG-~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+.++++     +|++||-+| +| .|.+++.+|+. .|++|++++.+++.++.+++
T Consensus       159 ~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~  215 (363)
T 4dvj_A          159 FDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS  215 (363)
T ss_dssp             HTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH
T ss_pred             HHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence            3556676     899999999 65 58899999986 58999999999999988865

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=84.61  E-value=1.5  Score=47.70  Aligned_cols=53  Identities=13%  Similarity=0.035  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHhcCCC--eEEeCCceeEEEecCC--eEEEEeCCCcEEecCEEEEecC
Q 036521          135 SYVNKVIALLESLGC--QIKTGCEVCSVLQYDE--GRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       135 ~l~~~la~~l~~~g~--~v~l~t~V~~i~~~~~--gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ++.+.+.+...+.+.  +|+++++|+++..+++  .|.|++.+|+++.||.||+|+=
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG  156 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAG  156 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcC
Confidence            344444443333354  7999999999988765  6899999998899999999985

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=84.60  E-value=1.5  Score=46.12  Aligned_cols=55  Identities=13%  Similarity=0.015  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EE--eC-CCc--EEecCEEEEecChH
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EV--RG-DGF--QGFYDGCIMAVHAP  189 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~--~~-~g~--~~~ad~VI~A~p~~  189 (602)
                      .+.+.|.+.+.+.|.+|+++++|+++..+++++. |+  .. +|+  ++.||.||.|+=..
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~  161 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS  161 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence            5667777777667899999999999998877754 43  33 665  68999999998443

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=84.53  E-value=1.4  Score=45.25  Aligned_cols=55  Identities=11%  Similarity=-0.069  Sum_probs=43.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecC-CeEEEEe-CCCc--EEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYD-EGRTEVR-GDGF--QGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~-~gv~v~~-~~g~--~~~ad~VI~A~p~  188 (602)
                      ..+.+.|.+.+.+.|.+|+++++|++++.++ +++.|+. .+|+  ++.+|.||.|.=.
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCT
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCC
Confidence            3566677777766689999999999999864 5677776 6776  6899999999843

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=84.50  E-value=0.44  Score=47.98  Aligned_cols=48  Identities=23%  Similarity=0.372  Sum_probs=40.8

Q ss_pred             HHccCCCCC-eEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGH-GVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~-~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ++.++++|+ +||-+|+  |.|.+++.+|+..|++|++++.+++.++.+++
T Consensus       142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~  192 (328)
T 1xa0_A          142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV  192 (328)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH
T ss_pred             hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            456788886 9999997  57888888998889999999999988888764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=84.48  E-value=1.3  Score=47.33  Aligned_cols=55  Identities=15%  Similarity=0.181  Sum_probs=44.3

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC---CC--cEEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG---DG--FQGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~---~g--~~~~ad~VI~A~p  187 (602)
                      ...+.+.+.+.+.++|.+|+++++|.+|+.+++++.|...   +|  +++.+|.||+|+.
T Consensus       238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G  297 (491)
T 3urh_A          238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATG  297 (491)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeC
Confidence            4556777888888889999999999999998888766543   24  4689999999984

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=84.05  E-value=1.5  Score=44.63  Aligned_cols=50  Identities=22%  Similarity=0.318  Sum_probs=41.4

Q ss_pred             HHHHccCCCC--CeEEEEec--CchHHHHHHHhccCC-EEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKG--HGVLEIGC--GWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g--~~vLDiGc--G~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~  591 (602)
                      +.+..++++|  ++||-.|+  |.|..+..+++..|+ +|++++.+++.++.+++
T Consensus       150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~  204 (357)
T 2zb4_A          150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTS  204 (357)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            3467789999  99999998  567777777777799 99999999988887765

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=83.69  E-value=2.2  Score=42.03  Aligned_cols=55  Identities=13%  Similarity=0.033  Sum_probs=41.1

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCC----C--cEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGD----G--FQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~----g--~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+|+++++|.+|..+++++ .|+..+    |  +++.+|.||+|+..
T Consensus       184 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~  245 (320)
T 1trb_A          184 KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH  245 (320)
T ss_dssp             HHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred             HHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence            4566778888877899999999999998876553 233322    3  46899999999854

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=83.67  E-value=0.76  Score=46.86  Aligned_cols=48  Identities=17%  Similarity=0.233  Sum_probs=39.5

Q ss_pred             HHccCCCC------CeEEEEecCc-hHHH-HHHH-hccCCE-EEEEcCCHH---HHHHHHH
Q 036521          544 EKARVSKG------HGVLEIGCGW-GTFA-IEVV-RQTGCN-YTGITLSAE---QLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g------~~vLDiGcG~-G~~~-~~la-~~~g~~-v~gid~S~~---~l~~a~~  591 (602)
                      +.+++++|      ++||-+|+|. |.++ +.+| +..|++ |++++.+++   .++.+++
T Consensus       160 ~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~  220 (357)
T 2b5w_A          160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE  220 (357)
T ss_dssp             HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH
T ss_pred             HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH
Confidence            55667889      9999999864 7777 8888 777987 999999988   8888764

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=83.48  E-value=1.3  Score=47.03  Aligned_cols=54  Identities=15%  Similarity=-0.002  Sum_probs=42.4

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEe--cCCeEEEEeC-----CCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQ--YDEGRTEVRG-----DGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~--~~~gv~v~~~-----~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.+|+++++|++|..  +++++.|+..     +++++.+|.||+|+-
T Consensus       224 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G  284 (478)
T 1v59_A          224 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVG  284 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCC
Confidence            45667788888888999999999999987  5566666543     345689999999974

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=83.44  E-value=1.8  Score=43.74  Aligned_cols=51  Identities=29%  Similarity=0.400  Sum_probs=40.9

Q ss_pred             HHHHHccCCCCCeEEEEecCc-hHHHHHHHhccCCE-EEEEcCCHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCN-YTGITLSAEQLKYAEM  591 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~-v~gid~S~~~l~~a~~  591 (602)
                      ......++++|++||-+|+|. |.+++.+|+..|++ ++++|.|++-++.|++
T Consensus       151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~  203 (346)
T 4a2c_A          151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS  203 (346)
T ss_dssp             HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH
Confidence            456677889999999999985 55667778777774 6899999998888865

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=83.25  E-value=1.3  Score=45.79  Aligned_cols=50  Identities=14%  Similarity=0.100  Sum_probs=41.0

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.++|.+++++++|++|+.  ++  |++.+|+++.+|.||++++
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~~--v~~~~g~~~~~D~vi~a~G  267 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--HE--IVDEKGNTIPADITILLPP  267 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS--SE--EEETTSCEEECSEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC--Ce--EEECCCCEEeeeEEEECCC
Confidence            45677788888888999999999999965  33  5567788899999999975

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=83.12  E-value=0.73  Score=50.37  Aligned_cols=63  Identities=14%  Similarity=0.047  Sum_probs=47.9

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe--CCC-cEEecCEEEEecCh-HHHHhhcc
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR--GDG-FQGFYDGCIMAVHA-PDALRILG  196 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~--~~g-~~~~ad~VI~A~p~-~~a~~ll~  196 (602)
                      ..+.+.|.+.+.+.|.+|+.+++|+++++++++|+|+.  .+| +++.||.||.|.=. ....+.+.
T Consensus       148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lG  214 (570)
T 3fmw_A          148 SRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAA  214 (570)
T ss_dssp             HHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchHHHHcC
Confidence            34556666666666899999999999999999988876  677 67899999999832 24444443

>1ikt_A Estradiol 17 beta-dehydrogenase 4; ALFA-beta fold, protein-triton X-100 complex, hydrophobic tunnel; HET: OXN; 1.75A {Homo sapiens} SCOP: d.106.1.1

Probab=83.03  E-value=3.1  Score=34.81  Aligned_cols=46  Identities=13%  Similarity=0.192  Sum_probs=35.3

Q ss_pred             CCcEEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCChHhHHHHHH
Q 036521          397 NLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIM  444 (602)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~  444 (602)
                      .+.++|++.... |.+++ .|.+....+||.|++.++|+..-+..+..
T Consensus        67 ~ad~tl~~~~~~-~~~l~-~G~~~~~~a~~~gklki~Gd~~~~~~l~~  112 (120)
T 1ikt_A           67 AADTTIILSDED-FMEVV-LGKLDPQKAFFSGRLKARGNIMLSQKLQM  112 (120)
T ss_dssp             CCSEEEEEEHHH-HHHHH-TTSSCHHHHHHTTSSEEEESHHHHHHHHH
T ss_pred             CCCEEEEEEHHH-HHHHH-cCCCCHHHHHHcCCEEEECCHHHHHHHHH
Confidence            578899998855 55554 59999999999999999997554444444

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=83.00  E-value=1.2  Score=46.99  Aligned_cols=55  Identities=16%  Similarity=0.066  Sum_probs=43.4

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC---CC--cEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG---DG--FQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~---~g--~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.++|.+|+++++|.+|..+++++.|...   +|  +++.+|.||+|+..
T Consensus       218 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~  277 (470)
T 1dxl_A          218 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR  277 (470)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCC
Confidence            456677888888889999999999999987766766543   34  57899999999743

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=82.86  E-value=0.98  Score=47.81  Aligned_cols=46  Identities=24%  Similarity=0.383  Sum_probs=40.8

Q ss_pred             ccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          546 ARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       546 l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .++++|++||-+|+  |.|.+++.+|+..|++|++++.|++.++.+++
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~  271 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA  271 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHh
Confidence            67899999999997  46888888998889999999999999998865

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=82.72  E-value=0.68  Score=46.42  Aligned_cols=48  Identities=19%  Similarity=0.324  Sum_probs=40.2

Q ss_pred             HHccCCCCC-eEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGH-GVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~-~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .++++++++ +||-+|+  |.|.+++.+|+..|++|++++.|++.++.+++
T Consensus       139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~  189 (324)
T 3nx4_A          139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS  189 (324)
T ss_dssp             HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred             hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            556676632 4999997  57999999999889999999999999998876

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=82.28  E-value=1.7  Score=46.21  Aligned_cols=55  Identities=20%  Similarity=0.159  Sum_probs=42.3

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCc-----EEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGF-----QGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~-----~~~ad~VI~A~p  187 (602)
                      ...+.+.+.+.+.++|.+|+++++|.+|+..+++ +.|+..++.     ++.+|.||+|+.
T Consensus       226 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G  286 (483)
T 3dgh_A          226 DQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIG  286 (483)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSC
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcc
Confidence            3456777888888889999999999999986554 556544332     678999999974

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=82.24  E-value=1.4  Score=46.80  Aligned_cols=54  Identities=15%  Similarity=0.137  Sum_probs=39.0

Q ss_pred             HhHHHHHHHHHhcCCCe--EEeCCceeEEEecCC--eEEEEeCC---C--cEEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQ--IKTGCEVCSVLQYDE--GRTEVRGD---G--FQGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~--v~l~t~V~~i~~~~~--gv~v~~~~---g--~~~~ad~VI~A~p  187 (602)
                      ..+.+.+.+.+.+.|.+  |+++++|++|.+.++  +|.|++.+   |  .++.||+||+|+=
T Consensus       101 ~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG  163 (464)
T 2xve_A          101 EVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTG  163 (464)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCC
Confidence            34555555544444666  999999999998766  67777543   4  4678999999996

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=82.15  E-value=1.4  Score=45.00  Aligned_cols=47  Identities=21%  Similarity=0.174  Sum_probs=37.5

Q ss_pred             HccCC--C-------CCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCH---HHHHHHHH
Q 036521          545 KARVS--K-------GHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSA---EQLKYAEM  591 (602)
Q Consensus       545 ~l~l~--~-------g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~---~~l~~a~~  591 (602)
                      ..+++  +       |++||-+|+|. |..++.+|+..|++|++++.++   +.++.+++
T Consensus       166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~  225 (366)
T 2cdc_A          166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEE  225 (366)
T ss_dssp             GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHH
T ss_pred             ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHH
Confidence            56787  8       99999999853 5566667776799999999998   77777764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=82.12  E-value=2.1  Score=42.50  Aligned_cols=54  Identities=19%  Similarity=0.083  Sum_probs=44.0

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe---CCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR---GDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~---~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.+.+.+.+.|.++++++ |.++..+++.|.+.+   .++..+.+|.||+|+=.
T Consensus        84 ~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~  140 (338)
T 3itj_A           84 SELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA  140 (338)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC
Confidence            3566777777777789999999 999999888898877   35667899999999843

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=82.07  E-value=2.1  Score=46.69  Aligned_cols=53  Identities=11%  Similarity=-0.068  Sum_probs=43.5

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      ...+.+.+.+.+.++|.+|+++++|.+|+.++++  |+..+|+++.+|.||+|+.
T Consensus       227 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~a~G  279 (588)
T 3ics_A          227 DYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGSVIQTDMLILAIG  279 (588)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEECSC
T ss_pred             CHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEEccC
Confidence            3567778888888889999999999999876555  4456777899999999984

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=82.07  E-value=1.4  Score=45.07  Aligned_cols=49  Identities=14%  Similarity=-0.021  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCC-eEEEEeCCCcEEecCEEEEec
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDE-GRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~-gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      .|-+.|.+.+   +.+|+++++|++++..++ +|+|+..+|+++.||.||-|-
T Consensus       113 ~L~~~L~~~~---~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgAD  162 (412)
T 4hb9_A          113 ELKEILNKGL---ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGAD  162 (412)
T ss_dssp             HHHHHHHTTC---TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECC
T ss_pred             HHHHHHHhhc---cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECC
Confidence            3555566666   678999999999998655 589999999999999888775

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=81.77  E-value=0.69  Score=46.54  Aligned_cols=48  Identities=25%  Similarity=0.379  Sum_probs=40.5

Q ss_pred             HHccCCCCC-eEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          544 EKARVSKGH-GVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       544 ~~l~l~~g~-~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ++.++++|+ +||-+|+  |.|.+++.+|+..|++|++++.|++.++.+++
T Consensus       143 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~  193 (330)
T 1tt7_A          143 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ  193 (330)
T ss_dssp             HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH
T ss_pred             HhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            456788886 9999997  47888888888889999999999888888765

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=81.75  E-value=1.8  Score=43.18  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=39.2

Q ss_pred             HHHccCCCCCeEEEEe-cC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIG-CG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiG-cG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      ++..++++|++||-+| +| .|.+++.+|+..|++|++++ +++.++.+++
T Consensus       145 l~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~  194 (321)
T 3tqh_A          145 LNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA  194 (321)
T ss_dssp             HHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH
Confidence            4778899999999997 55 68888999988899999997 6665666654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=81.73  E-value=2.8  Score=45.23  Aligned_cols=54  Identities=17%  Similarity=0.032  Sum_probs=43.4

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe--EEEEeCCCcEEecCEEEEecCh
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG--RTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g--v~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ..+.+.|.+.+.+.|.+++.+ +|++|..++++  +.|++.+|+++.+|.||.|+=.
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~  220 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGM  220 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGG
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCC
Confidence            456777777777679999999 89999986665  4677778878999999999844

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=81.52  E-value=0.88  Score=46.98  Aligned_cols=44  Identities=14%  Similarity=-0.135  Sum_probs=38.4

Q ss_pred             HhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          144 LESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       144 l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      +.++|.+|++++.|..++.+.++..|.+.+|+++.+|.||+++|
T Consensus       212 l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g  255 (401)
T 3vrd_B          212 TENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPP  255 (401)
T ss_dssp             STTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCC
T ss_pred             HHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecC
Confidence            45678899999999999988888888889998999999999864

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=81.32  E-value=1.6  Score=47.59  Aligned_cols=57  Identities=9%  Similarity=-0.072  Sum_probs=44.5

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeC---CC--cEEecCEEEEecChH
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRG---DG--FQGFYDGCIMAVHAP  189 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~---~g--~~~~ad~VI~A~p~~  189 (602)
                      ...+...+++.+.++|.+|+.+++|++|.++++++ .|++.   +|  .++.||.||.|+=+.
T Consensus       169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~  231 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW  231 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcc
Confidence            45678888888888899999999999999987764 34432   34  367999999999543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=81.13  E-value=2.3  Score=45.33  Aligned_cols=54  Identities=7%  Similarity=0.028  Sum_probs=44.0

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC--CC--cEEecCEEEEecC
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG--DG--FQGFYDGCIMAVH  187 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~--~g--~~~~ad~VI~A~p  187 (602)
                      ...+.+.+.+.+.++ .+|+++++|.+|+.+++++.|...  +|  +++.+|.||+|+.
T Consensus       214 d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G  271 (492)
T 3ic9_A          214 DEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATG  271 (492)
T ss_dssp             CHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSC
T ss_pred             CHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeC
Confidence            356777888888766 899999999999988888877653  56  5789999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	602
d1kpga_	285	c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [	6e-27
d1kpia_	291	c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [	7e-25
d2fk8a1	280	c.66.1.18 (A:22-301) Methoxy mycolic acid synthase	2e-23
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-16
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-08
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	3e-08
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-07
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-06
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	1e-05
d2o57a1	282	c.66.1.18 (A:16-297) Putative sarcosine dimethylgl	1e-05
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-05
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-05
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	6e-05
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	1e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	0.001
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	0.002
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.002
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	0.002
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	0.003
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	0.003
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.003

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  108 bits (270), Expect = 6e-27
 Identities = 38/106 (35%), Positives = 58/106 (54%)

Query: 489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARV 548
           + L     N+  HYDLS++ F LF+D + TYSC  F+ +D  L+ AQ+ K  L + K  +
Sbjct: 1   DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGL 60

Query: 549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN 594
             G  +L++GCGWG   +  V +   N  G+TLS  Q  + +  V 
Sbjct: 61  QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVA 106

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  102 bits (255), Expect = 7e-25
 Identities = 39/102 (38%), Positives = 54/102 (52%)

Query: 491 LAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSK 550
           L      +  HYD SNE F L++D SMTYSC  F+  D  L+ AQ  K  L ++K  +  
Sbjct: 2   LKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEP 61

Query: 551 GHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592
           G  +L+IGCGWG+     V +   N  G+TLS  Q  + +  
Sbjct: 62  GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAM 103

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 98.4 bits (244), Expect = 2e-23
 Identities = 37/96 (38%), Positives = 52/96 (54%)

Query: 500 YHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGC 559
            HYD+S++ FALF D + TYSC  F+  +  L+ AQ  K  L ++K  +  G  +L+IGC
Sbjct: 2   AHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGC 61

Query: 560 GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE 595
           GWGT     V +   N  G+TLS  Q    E  +  
Sbjct: 62  GWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLAS 97

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (193), Expect = 2e-16
 Identities = 24/209 (11%), Positives = 60/209 (28%), Gaps = 25/209 (11%)

Query: 402 LRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLL-NLIMILIAIRDLDASVSKVN 460
           LR+ +P      +    L + D + D      +    +   +  + +A+ +         
Sbjct: 3   LRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTK 62

Query: 461 QKRGWWTPLLFTSGIASASYFLRHISRRNSLAQARRNISYHYDLSNELFALFMDESMTYS 520
                                 ++    +S+ Q  +  +    L+       +   +   
Sbjct: 63  SFESMQRLCD------------KYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQV 110

Query: 521 C-----------PIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVV 569
                              E          +  I++ +++     +++G G G   ++V 
Sbjct: 111 YNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVA 170

Query: 570 RQTGC-NYTGITLSAEQLKYAEMKVNEAG 597
             T C ++ G+  +    KYAE    E  
Sbjct: 171 AATNCKHHYGVEKADIPAKYAETMDREFR 199

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 28/266 (10%), Positives = 75/266 (28%), Gaps = 26/266 (9%)

Query: 2   TCPNMMEFLESLGADMEISNM---------------SFSKKNVLGPYFWQIIREIMKFKD 46
           T   ++   + LG +    N                      V  P  +       +  D
Sbjct: 59  TQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMD 118

Query: 47  DVLCYLEELENNPDIDRDE----TLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMS 102
           D+   +           +E    T+ + +    ++E  ++   + +   + +   E    
Sbjct: 119 DMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSAL 178

Query: 103 FSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQ 162
           +  + +        ++      Q       S         +++ LG ++K    V  + Q
Sbjct: 179 WFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSE---RIMDLLGDRVKLERPVIYIDQ 235

Query: 163 YDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQYVYSDIFLHRD 222
             E       +         I A+     ++I  N      +  +    +    +  +  
Sbjct: 236 TRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGR 295

Query: 223 KNFMPRNPAAWS----AWNFLGGLDG 244
               P +   ++    A ++ G ++G
Sbjct: 296 VLRQPVDRIYFAGTETATHWSGYMEG 321

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 11/100 (11%), Positives = 30/100 (30%), Gaps = 5/100 (5%)

Query: 505 SNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSL----QIEKARVSKGHGVLEIGCG 560
             + +         Y    +  +      A+M K +L    +       +G  +++IG G
Sbjct: 3   GGDEYQKHFL-PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSG 61

Query: 561 WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600
              + +     +  + T    +    +  E  + +     
Sbjct: 62  PTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAY 101

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQ 599
            ++ ++ KG   +++G G G   ++   + GC    G  +  +      ++  E   +
Sbjct: 209 YQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR 266

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 36/269 (13%), Positives = 64/269 (23%), Gaps = 32/269 (11%)

Query: 4   PNMMEFLESLGADMEISNMSFSKKNVLGPYFWQ-----------IIREIMKFKDDVLCYL 52
           P       +L  +  I     + K        +           +  +I+     +    
Sbjct: 61  PATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAG 120

Query: 53  EELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFY 112
           E          DE+L  F +        Q        G       +  ++ +   ++   
Sbjct: 121 ELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKME 180

Query: 113 RNHHLLQLFGRPQWLTVRSRSHSYVNKVI-----------------ALLESLGCQIKTGC 155
           R H  L L         R  +                         AL  SLG     G 
Sbjct: 181 REHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGA 240

Query: 156 EVCSVLQYDEG---RTEVRGDGFQGFYDGCIMAVHAPDALRILGNQSTFEEKRLLGAFQY 212
            V  + + D G     E  G   +      ++A  A    ++L          L+     
Sbjct: 241 RVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDD-ALAALVAGIYN 299

Query: 213 VYSDIFLHRDKNFMPRNPAAWSAWNFLGG 241
           +     +      + R P      N   G
Sbjct: 300 LGHLERVAAIDAALQRLPGLHLIGNAYKG 328

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA 596
            K++      R+  G  +L++G G G       R  G   TGI +S+     A+ +  E 
Sbjct: 20  EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL 79

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 494 ARRNISYHYDL--SNELFA-LFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEK----A 546
            + N   +YD   S+  +  ++  E +         + ++++ A +R       +     
Sbjct: 4   VKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTG 63

Query: 547 RVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591
            + +    L++G G+G  A  +VR+ G +   + ++  Q K  E 
Sbjct: 64  VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE 108

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 532 KVAQMRKHSLQIE----KARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLK 587
           K   +R  +  I+    +    +G  VL++GCG G   ++  R     Y G+ ++   + 
Sbjct: 2   KTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIN 61

Query: 588 YAEMKVNEAGLQ 599
            A ++      +
Sbjct: 62  DARVRARNMKRR 73

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM 591
           ++ A +     VL++  G G  A               L+ + LK A  
Sbjct: 8   MQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARA 55

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           L +  A   K    +++GCG G   +E +         I  + E +   EM +   GL 
Sbjct: 24  LIMCLAEPGKNDVAVDVGCGTGGVTLE-LAGRVRRVYAIDRNPEAISTTEMNLQRHGLG 81

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 539 HSLQ--IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQ 585
           HSL   I+ A     H VL+IG G G  A+           G+  + E 
Sbjct: 3   HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEM 50

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
            +   + K   VL++GCG G  ++   +       G+  S E L  A   +    L+
Sbjct: 28  YQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS-EILYQAMDIIRLNKLE 83

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV 600
                V  G  VL   CG       +  Q G +  G  LS   ++    +  E     
Sbjct: 13  WSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHIT 69

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 0.002
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN--YTGITLSAEQLKYAEMKVNEAGLQ 599
           +    ++ G  VLE G G G  ++ + +  G         +  +    A+         
Sbjct: 91  LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT 601
           +   R    H VL++ CG G  +I +V + G + T +  S + LKYA  +      +  
Sbjct: 49  LGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPA 106

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (88), Expect = 0.002
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ 599
           I+   + K   VL++GCG G  ++   +    +  G+ +S   ++ A+  V   G  
Sbjct: 31  IQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS 86

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 2/94 (2%)

Query: 501 HYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSL--QIEKARVSKGHGVLEIG 558
            +         +      Y             V +  +      +  A  SKG  VLE+G
Sbjct: 2   IFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVG 61

Query: 559 CGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK 592
            G    A +V       +  I  +    +     
Sbjct: 62  FGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDW 95

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 544 EKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKY 588
               + K   VL++G G G   +   +       GI  S+     
Sbjct: 27  HNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 71

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCN--YTGITLSAEQLKYAEMKVNEA 596
           I +  +  G  +LE+G G G  +  ++         T +    + LK A   ++E 
Sbjct: 78  IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	602
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.95
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.94
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.94
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.58
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.53
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.29
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.2
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.19
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.16
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.16
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.13
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.12
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.11
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.03
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.02
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.99
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.91
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.91
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.9
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.9
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.89
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.87
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.87
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.86
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.86
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.84
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.84
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.83
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.79
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.76
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.73
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.71
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.7
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.67
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.66
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.65
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.61
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.57
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.56
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.55
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.55
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.53
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.49
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.46
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.46
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.44
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.42
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.39
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.38
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.37
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.33
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.31
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.29
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.29
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.29
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.28
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.28
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.28
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.28
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.26
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.25
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.24
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.24
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.23
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.23
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.21
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.12
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.11
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.02
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.99
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.96
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.83
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.83
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.83
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.8
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.79
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.7
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.65
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.57
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.29
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.23
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.16
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	97.07
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.06
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.04
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.78
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.76
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.71
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.7
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	96.69
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.55
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.51
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.5
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.43
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	96.38
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.34
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.28
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	96.2
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.19
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.17
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.13
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.07
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.06
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.01
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.0
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	95.81
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	95.8
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.69
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.62
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.59
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.59
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.58
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	95.56
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.53
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.51
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.48
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.41
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.38
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.35
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.34
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.34
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.29
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	95.29
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.25
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.24
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.13
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.09
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.02
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	94.94
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.89
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.85
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.8
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	94.72
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.46
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	94.32
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.28
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	94.22
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.19
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.16
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.09
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.94
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.92
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.59
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.52
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.18
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.05
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	93.02
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	92.92
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.92
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.44
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.25
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.54
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.05
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	90.36
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	89.81
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.39
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	88.97
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	88.95
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.91
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	88.87
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	88.41
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	87.48
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	87.39
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.18
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	87.05
d1ikta_	115	SCP2-like domain of MFE-2 {Human (Homo sapiens) [T	86.57
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	86.06
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.81
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	85.61
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	85.58
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	84.39
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	84.23
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	83.84
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	80.74

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=3.1e-29  Score=250.43  Aligned_cols=113  Identities=34%  Similarity=0.604  Sum_probs=107.6

Q ss_pred             CchHHHHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHH
Q 036521          489 NSLAQARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEV  568 (602)
Q Consensus       489 ~~~~~~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~l  568 (602)
                      |+.+.+.+||++|||++|+||++|||++|+||||||++++++|++||.+|++.++++++++||++|||||||||++++++
T Consensus         1 ~~~~~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~   80 (285)
T d1kpga_           1 DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRA   80 (285)
T ss_dssp             CCSCCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHH
T ss_pred             CCCCccHHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          569 VRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       569 a~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      |+++||+|+|||+|++|+++|+++++++|+.++
T Consensus        81 a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~  113 (285)
T d1kpga_          81 VEKYDVNVVGLTLSKNQANHVQQLVANSENLRS  113 (285)
T ss_dssp             HHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSC
T ss_pred             HhcCCcceEEEeccHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999999999999999998764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=9.4e-28  Score=240.29  Aligned_cols=108  Identities=36%  Similarity=0.607  Sum_probs=104.4

Q ss_pred             HHHhhHhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccC
Q 036521          494 ARRNISYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTG  573 (602)
Q Consensus       494 ~~~~i~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g  573 (602)
                      +.++|++|||++|+||++|+|++|+|||+||++++++|++||.+|++++++++++++|++|||||||||++++++|+++|
T Consensus         5 ~~~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g   84 (291)
T d1kpia_           5 PVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD   84 (291)
T ss_dssp             CHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             cHhHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          574 CNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       574 ~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      |+|+|||+|++|+++|+++++..|+.++
T Consensus        85 ~~v~git~s~~q~~~a~~~~~~~~l~~~  112 (291)
T d1kpia_          85 VNVIGLTLSENQYAHDKAMFDEVDSPRR  112 (291)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHSCCSSC
T ss_pred             cceeeccchHHHHHHHHHHHHhhccchh
Confidence            9999999999999999999999999865

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=3.6e-27  Score=235.40  Aligned_cols=103  Identities=36%  Similarity=0.607  Sum_probs=99.6

Q ss_pred             HhhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEE
Q 036521          499 SYHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTG  578 (602)
Q Consensus       499 ~~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~g  578 (602)
                      ++|||++|+||++|||++|+||||||++++++|++||.+|++.++++++++||++|||||||||+++.++++++|++|||
T Consensus         1 qaHYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~g   80 (280)
T d2fk8a1           1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIG   80 (280)
T ss_dssp             GGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEE
T ss_pred             CCCccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             EcCCHHHHHHHHHHHHHcCCCCC
Q 036521          579 ITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       579 id~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      ||+|++|+++|++++++.|++++
T Consensus        81 i~ls~~q~~~a~~~~~~~~l~~~  103 (280)
T d2fk8a1          81 LTLSKNQHARCEQVLASIDTNRS  103 (280)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSC
T ss_pred             ecchHHHHHHHHHHHHhhccccc
Confidence            99999999999999999998753

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.58  E-value=3.4e-15  Score=148.51  Aligned_cols=107  Identities=21%  Similarity=0.346  Sum_probs=89.8

Q ss_pred             HHHHhhHhhhcc--chHHHHhhc-CCCCcccccccCCC--CccHHHHHHHHHHHHHHHc----cCCCCCeEEEEecCchH
Q 036521          493 QARRNISYHYDL--SNELFALFM-DESMTYSCPIFKDE--DEDLKVAQMRKHSLQIEKA----RVSKGHGVLEIGCGWGT  563 (602)
Q Consensus       493 ~~~~~i~~~Yd~--~~~~y~~~~-~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l----~l~~g~~vLDiGcG~G~  563 (602)
                      ..++++..|||.  .+.||+.+| ++.++  .|||+++  ..++.+|+.+..+.+++.+    ++++|++|||||||+|.
T Consensus         3 ~~~~~~~~~y~~~~~~~fy~~~w~g~~~h--~G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~   80 (282)
T d2o57a1           3 TVKDNAEIYYDDDDSDRFYFHVWGGEDIH--VGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGG   80 (282)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHTTSCCC--SCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSH
T ss_pred             hHHHHHHHhcCCchhHHHHHHHcCCCCce--eeecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcH
Confidence            457789999998  779998765 55555  5889754  4567888877777766655    78999999999999999


Q ss_pred             HHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          564 FAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       564 ~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      ++.++|+++|++|+|||+|+.|++.|+++++..|++++
T Consensus        81 ~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~  118 (282)
T d2o57a1          81 AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADN  118 (282)
T ss_dssp             HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTT
T ss_pred             HHhhhhccCCcEEEEEeccchhhhhhhccccccccccc
Confidence            99999988899999999999999999999999998753

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.1e-16  Score=158.36  Aligned_cols=184  Identities=15%  Similarity=0.101  Sum_probs=116.6

Q ss_pred             EEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCChHhHHHHHHHHHHhcccccchhhcccccCCCcchhhhhhhhhHH
Q 036521          400 TVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEEGLLNLIMILIAIRDLDASVSKVNQKRGWWTPLLFTSGIASAS  479 (602)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (602)
                      ++|++++|....+++.+..+++||+||+|.+++.+       +++.++.+.......  ...........   .......
T Consensus         1 ~~lrl~sP~~~~~~~~~~~l~~~e~~~d~~~ei~~-------~i~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~   68 (328)
T d1nw3a_           1 LELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIE-------TIRWVCEEIPDLKLA--MENYVLIDYDT---KSFESMQ   68 (328)
T ss_dssp             CEEEECCTTSCCCEEEESSCCEEETTEEHHHHHHH-------HHHHHHHHCHHHHHH--HSSSCCSCCCT---TCHHHHH
T ss_pred             CeEEEeCCccccceeecCCccchhhcCCcHHHHHH-------HHHHHHHhchhhhHH--HHHHHHHhcCC---ccHHHHH
Confidence            47999999999999999999999999999877643       333333221110000  00000000000   0001111


Q ss_pred             HHHHhhhc-cCchHHHHHhhHhhhccchHHHHhhcCC--CCccccc---------ccCCCCccHHHHHHHHHHHHHHHcc
Q 036521          480 YFLRHISR-RNSLAQARRNISYHYDLSNELFALFMDE--SMTYSCP---------IFKDEDEDLKVAQMRKHSLQIEKAR  547 (602)
Q Consensus       480 ~~~~~~~~-~~~~~~~~~~i~~~Yd~~~~~y~~~~~~--~~~ys~~---------~~~~~~~~l~~aq~~~~~~l~~~l~  547 (602)
                      ..+....+ -+...+..+++.+|||+.++++..+++.  .+.|+++         |+.-.+..+.+++..++..++++++
T Consensus        69 ~~~~~~n~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~~~~e~~~~~~~~~~~~~~  148 (328)
T d1nw3a_          69 RLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIK  148 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCCSSCCCCHHHHHHHHHHHHHHHCSCGGGGGCSCSSSTTCCCCCCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhhhccchhhHHhcccccHHHHHHHHhhhhhhccCCHHHhccccCCCCCchhhhHHHHHHHHHHHcC
Confidence            11111111 1233456677888888755444433332  1233332         2333345666777888899999999


Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHH
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ++++++|||||||+|.+++.+|++.++ +|+|||+|++|++.|++..++
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~  197 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE  197 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            999999999999999999999987676 799999999999999887665

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.5e-12  Score=124.59  Aligned_cols=66  Identities=24%  Similarity=0.303  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      ..+++.+++.++++||++|||||||+|.++..++++.|++|+|||+|++|++.|+++++..|++++
T Consensus        19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~   84 (245)
T d1nkva_          19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSER   84 (245)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcccc
Confidence            457778999999999999999999999999999987889999999999999999999999998764

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.20  E-value=1.4e-11  Score=118.38  Aligned_cols=62  Identities=26%  Similarity=0.346  Sum_probs=57.4

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..++.+++.++++||++|||||||+|.++..++++ +.+|+|||+|++|+++|+++++..+++
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~   64 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE   64 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccc
Confidence            45678899999999999999999999999999996 789999999999999999999988875

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.19  E-value=5.2e-10  Score=109.93  Aligned_cols=143  Identities=15%  Similarity=0.132  Sum_probs=97.0

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhH-HhhhHHHHHHHHHhcC----------------c----ccc
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGI-MSFSAFSILSFYRNHH----------------L----LQL  120 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~-~~~p~~~~l~~~~~~g----------------~----~~~  120 (602)
                      ....++.+++++. ....+......|+....+...+... .......+........                .    ...
T Consensus       130 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (347)
T d2ivda1         130 GVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAP  208 (347)
T ss_dssp             TCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSC
T ss_pred             cccccHHHHHHhh-hhcchhccccchhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhccccccccccc
Confidence            3567899998885 5666677777888877776655322 0000001111111000                0    001


Q ss_pred             CCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC-CC--cEEecCEEEEecChHHHHhhccC
Q 036521          121 FGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG-DG--FQGFYDGCIMAVHAPDALRILGN  197 (602)
Q Consensus       121 ~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~-~g--~~~~ad~VI~A~p~~~a~~ll~~  197 (602)
                      .....+..+.+|++.+++++++.+   |.+|+++++|++|+.++++++|++. +|  +++.||+||+|+|++.+.+||.+
T Consensus       209 ~~~~~~~~~~~g~~~~~~~l~~~~---g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~  285 (347)
T d2ivda1         209 KLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRP  285 (347)
T ss_dssp             CCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTT
T ss_pred             cccCcccccCCchHHHHHHHHHHh---hcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccC
Confidence            223467788999999999999999   8899999999999998888877653 33  35789999999999999999985


Q ss_pred             CCCHHHHhhccC
Q 036521          198 QSTFEEKRLLGA  209 (602)
Q Consensus       198 ~~~~~~~~~l~~  209 (602)
                       ..+...+.+.+
T Consensus       286 -~~~~~~~~~~~  296 (347)
T d2ivda1         286 -LDDALAALVAG  296 (347)
T ss_dssp             -TCHHHHHHHHT
T ss_pred             -CCHHHHHHhhc
Confidence             77776665554

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.16  E-value=1e-11  Score=115.49  Aligned_cols=58  Identities=21%  Similarity=0.104  Sum_probs=52.2

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..++..+.++||.+|||+|||+|..+.+||++ |++|||||+|++|++.|+++++..+.
T Consensus        10 ~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~   67 (201)
T d1pjza_          10 QQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPH   67 (201)
T ss_dssp             HHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSE
T ss_pred             HHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccc
Confidence            34577789999999999999999999999996 99999999999999999999866543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=2e-11  Score=118.23  Aligned_cols=87  Identities=22%  Similarity=0.334  Sum_probs=68.8

Q ss_pred             hhhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEE
Q 036521          500 YHYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGI  579 (602)
Q Consensus       500 ~~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gi  579 (602)
                      .+||...++|+........+            ..++...+..++.....+++.+|||||||+|..+..++++ |++|+||
T Consensus         3 ~~~~~~a~~Yd~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gv   69 (251)
T d1wzna1           3 ELYTLLAEYYDTIYRRRIER------------VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGL   69 (251)
T ss_dssp             GGGTTTGGGHHHHTHHHHHT------------HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEE
T ss_pred             chhHhhHHHHHHHHHhhhhh------------HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc-ceEEEEE
Confidence            46777777777654332111            1233556677888888888899999999999999999996 8999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCC
Q 036521          580 TLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       580 d~S~~~l~~a~~~~~~~gl~  599 (602)
                      |+|++|++.|++++++.++.
T Consensus        70 D~s~~mi~~a~~~~~~~~~~   89 (251)
T d1wzna1          70 DLHEEMLRVARRKAKERNLK   89 (251)
T ss_dssp             ESCHHHHHHHHHHHHHTTCC
T ss_pred             eecccccccccccccccccc
Confidence            99999999999999988764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.13  E-value=5.3e-11  Score=110.07  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=58.0

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +....++.++++++|++|||||||+|.+++.+|+. +++|+|+|+|+++++.|++++++.|+.++
T Consensus        20 eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~   83 (186)
T d1l3ia_          20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDN   83 (186)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcc
Confidence            34457888999999999999999999999999985 78999999999999999999999998753

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.12  E-value=4.6e-11  Score=114.11  Aligned_cols=60  Identities=20%  Similarity=0.198  Sum_probs=55.4

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.++++.++++++++|||||||+|.++..++++ +++|+|||+|++|+++|+++++..+..
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~   63 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ   63 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhcccccccc
Confidence            357889999999999999999999999999986 899999999999999999999988765

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.11  E-value=6.3e-11  Score=114.54  Aligned_cols=84  Identities=19%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             hhccchHHHHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEc
Q 036521          501 HYDLSNELFALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGIT  580 (602)
Q Consensus       501 ~Yd~~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid  580 (602)
                      +|+.-.++|+..+...+.|             +.....+..++.+.++ ++.+|||||||+|.++..++++ |.+|+|||
T Consensus         2 ~y~~~A~~YD~l~~~~~~y-------------~~~~~~~~~~~~~~~~-~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD   66 (246)
T d1y8ca_           2 CYNKFAHIYDKLIRADVDY-------------KKWSDFIIEKCVENNL-VFDDYLDLACGTGNLTENLCPK-FKNTWAVD   66 (246)
T ss_dssp             CHHHHHHHHHHHTTCSCCH-------------HHHHHHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGG-SSEEEEEC
T ss_pred             CHHHHHHHHHHHhcCCCCH-------------HHHHHHHHHHHHHhCC-CCCeEEEEeCcCCHHHHHHHHh-CCccEeec
Confidence            4666677777666555444             1223344445555444 4569999999999999999996 89999999


Q ss_pred             CCHHHHHHHHHHHHHcCCC
Q 036521          581 LSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       581 ~S~~~l~~a~~~~~~~gl~  599 (602)
                      +|++|++.|+++++..|+.
T Consensus        67 ~S~~ml~~A~~~~~~~~~~   85 (246)
T d1y8ca_          67 LSQEMLSEAENKFRSQGLK   85 (246)
T ss_dssp             SCHHHHHHHHHHHHHTTCC
T ss_pred             cchhhhhhccccccccCcc
Confidence            9999999999999888764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=3.9e-10  Score=106.84  Aligned_cols=65  Identities=18%  Similarity=0.323  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          533 VAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       533 ~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.+...++.++++ -++++.+|||||||+|.++..+++. +++|+|+|+|++|+++|++++...+..
T Consensus        21 ~~~~~~~~~~~~~-~l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~~   85 (226)
T d1ve3a1          21 RSRIETLEPLLMK-YMKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESN   85 (226)
T ss_dssp             HHHHHHHHHHHHH-SCCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHH-hcCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhcccccc
Confidence            3444445556665 3568889999999999999999995 899999999999999999999887754

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=1.5e-10  Score=111.92  Aligned_cols=81  Identities=20%  Similarity=0.340  Sum_probs=60.5

Q ss_pred             HHhhcCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHH
Q 036521          509 FALFMDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKY  588 (602)
Q Consensus       509 y~~~~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~  588 (602)
                      +...+++.|.+..|..+.        .+-.++.+. +. .++|++|||+|||+|.+++.+++ .|++|+|||+|++|++.
T Consensus        89 ~~i~i~pg~aFGTG~H~T--------T~l~l~~l~-~~-~~~g~~VLDiGcGsG~l~i~aa~-~g~~V~gvDis~~av~~  157 (254)
T d2nxca1          89 IPLVIEPGMAFGTGHHET--------TRLALKALA-RH-LRPGDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQ  157 (254)
T ss_dssp             EEEECCCC-----CCSHH--------HHHHHHHHH-HH-CCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHH
T ss_pred             eEEEEccccccCccccch--------hhHHHHHHH-hh-cCccCEEEEcccchhHHHHHHHh-cCCEEEEEECChHHHHH
Confidence            457789999988776642        122233333 32 47899999999999999999888 59999999999999999


Q ss_pred             HHHHHHHcCCCC
Q 036521          589 AEMKVNEAGLQV  600 (602)
Q Consensus       589 a~~~~~~~gl~~  600 (602)
                      |+++++.+|+++
T Consensus       158 A~~na~~n~~~~  169 (254)
T d2nxca1         158 AEANAKRNGVRP  169 (254)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHcCCce
Confidence            999999999865

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.99  E-value=5.3e-10  Score=106.34  Aligned_cols=58  Identities=17%  Similarity=0.321  Sum_probs=49.2

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .++... ++++.+|||||||+|..+..++++   .+++|+|||+|++|++.|++++++.+..
T Consensus        31 ~~~~~~-~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~   91 (225)
T d1im8a_          31 MLAERF-VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE   91 (225)
T ss_dssp             HHHHHH-CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS
T ss_pred             HHHHHh-cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc
Confidence            334433 578899999999999999999975   5889999999999999999999877654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.91  E-value=1.2e-09  Score=104.73  Aligned_cols=56  Identities=23%  Similarity=0.259  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .+.+..++.+. ++++.+|||||||+|.++..++++ |++|+|||+|++|++.|+++.
T Consensus        29 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~   84 (246)
T d2avna1          29 HRLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKG   84 (246)
T ss_dssp             HHHHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh-cCCCCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccc
Confidence            34444555554 457779999999999999999985 999999999999999999874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.6e-10  Score=109.83  Aligned_cols=53  Identities=15%  Similarity=0.178  Sum_probs=45.0

Q ss_pred             ccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          546 ARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ....++.+|||||||+|.++..++++.+.+|+|||+|++|++.|+++++..+.
T Consensus        56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~  108 (222)
T d2ex4a1          56 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK  108 (222)
T ss_dssp             --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG
T ss_pred             cCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc
Confidence            35567789999999999999998776567999999999999999999876654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.90  E-value=1.2e-09  Score=101.69  Aligned_cols=51  Identities=24%  Similarity=0.401  Sum_probs=46.5

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +++| +|||||||+|..+.+++++ |++|+|||+|++|++.|+++++..|++.
T Consensus        29 ~~~g-rvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~~   79 (198)
T d2i6ga1          29 VAPG-RTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLDN   79 (198)
T ss_dssp             SCSC-EEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             CCCC-cEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhccccc
Confidence            4455 9999999999999999996 9999999999999999999999988763

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=7.8e-10  Score=113.31  Aligned_cols=61  Identities=16%  Similarity=0.314  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHc
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ...+..+++++++++|++|||||||+|.+++.+|++.|| +|+|||+|+.|++.|++++++.
T Consensus       202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            345678999999999999999999999999999998776 8999999999999999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=6.2e-09  Score=104.65  Aligned_cols=139  Identities=13%  Similarity=0.047  Sum_probs=99.9

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCc----cccCCCCcEEEecCCcHhHHH
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHL----LQLFGRPQWLTVRSRSHSYVN  138 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~----~~~~~~~~~~~~~gG~~~l~~  138 (602)
                      +..++.+|+.+........ .++.++....+...+...   ++..++.+....+.    ........++.+.++++.+++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (383)
T d2v5za1         139 DNMTMKELLDKLCWTESAK-QLATLFVNLCVTAETHEV---SALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSE  214 (383)
T ss_dssp             HTSBHHHHHHHHCSSHHHH-HHHHHHHHHHHSSCTTTS---BHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHH
T ss_pred             hhhHHHHHHHHhccchHHH-HHHHHhhhhhhccccchh---hHHHHHHHHHhhcccccccccccCcceeeeccchhHHHH
Confidence            3679999999987666644 455666666666655443   23333333332221    112344567788999999999


Q ss_pred             HHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhccCC-CCHHHHhhcc
Q 036521          139 KVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRILGNQ-STFEEKRLLG  208 (602)
Q Consensus       139 ~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll~~~-~~~~~~~~l~  208 (602)
                      ++++..   |++|+++++|++|.+++++|.|++.+|+++.||+||+|+|+....++...+ +.+...+.+.
T Consensus       215 ~l~~~~---g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~  282 (383)
T d2v5za1         215 RIMDLL---GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMIT  282 (383)
T ss_dssp             HHHHHH---GGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTT
T ss_pred             HHHHHc---CCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHH
Confidence            999887   889999999999999999999999999889999999999998888876432 3344444333

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.6e-10  Score=110.56  Aligned_cols=94  Identities=9%  Similarity=0.027  Sum_probs=64.0

Q ss_pred             chHHHHhhcCCCCcccccccCCCCccHHHHH--HHHHHHHHHHc--cCCCCCeEEEEecCchHHHHHHHhccCCEEEEEc
Q 036521          505 SNELFALFMDESMTYSCPIFKDEDEDLKVAQ--MRKHSLQIEKA--RVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGIT  580 (602)
Q Consensus       505 ~~~~y~~~~~~~~~ys~~~~~~~~~~l~~aq--~~~~~~l~~~l--~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid  580 (602)
                      +.++|..++++. .|...||........+.+  .-....+.+.+  ...+|.+|||||||+|..+..++...+.+|+|+|
T Consensus         3 ~~~~y~~~f~~~-~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD   81 (257)
T d2a14a1           3 GGDEYQKHFLPR-DYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSD   81 (257)
T ss_dssp             CHHHHHHHCCHH-HHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEE
T ss_pred             CcchHHhhcChH-HHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEec
Confidence            456777777654 565666654433333222  11222333322  3456889999999999998888876344799999


Q ss_pred             CCHHHHHHHHHHHHHcCCC
Q 036521          581 LSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       581 ~S~~~l~~a~~~~~~~gl~  599 (602)
                      +|+.|++.|++++++.+..
T Consensus        82 ~S~~~i~~a~~~~~~~~~~  100 (257)
T d2a14a1          82 FTDRNREELEKWLKKEPGA  100 (257)
T ss_dssp             SCHHHHHHHHHHHHTCTTC
T ss_pred             CCHHHHHHHHHHHhhcccc
Confidence            9999999999999876654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=2.3e-09  Score=100.86  Aligned_cols=64  Identities=27%  Similarity=0.259  Sum_probs=57.2

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+...+++.+++++|++|||||||+|.++..+|+..  +++|+++|+++++++.|+++.+..++++
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n  127 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN  127 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc
Confidence            345568999999999999999999999999999873  4799999999999999999999988764

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.86  E-value=2.4e-09  Score=99.29  Aligned_cols=59  Identities=22%  Similarity=0.442  Sum_probs=54.7

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+++.+.+.++++|||||||+|.+++.+|+. +.+|+|+|+|+.+++.|+++++..++++
T Consensus        43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~  101 (194)
T d1dusa_          43 ILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDN  101 (194)
T ss_dssp             HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCcc
Confidence            5788889999999999999999999999985 7899999999999999999999998875

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.86  E-value=8.3e-08  Score=95.30  Aligned_cols=70  Identities=11%  Similarity=0.018  Sum_probs=58.9

Q ss_pred             CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe----CCCcEEecCEEEEecChHHHHhhc
Q 036521          123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR----GDGFQGFYDGCIMAVHAPDALRIL  195 (602)
Q Consensus       123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~----~~g~~~~ad~VI~A~p~~~a~~ll  195 (602)
                      ...+..+.+|++.+++++++..   |.+|+++++|++|..++++++|+.    .+++++.||+||+|+|+..+.++.
T Consensus       227 ~~~~~~~~~~~~~l~~~l~~~~---g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~  300 (370)
T d2iida1         227 EKRFDEIVDGMDKLPTAMYRDI---QDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIK  300 (370)
T ss_dssp             CCCEEEETTCTTHHHHHHHHHT---GGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSE
T ss_pred             ccccccchhhHHHHHHHHHHhc---CCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCc
Confidence            4567789999999999999887   889999999999999999987763    244578999999999987776553

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=1.7e-09  Score=107.06  Aligned_cols=59  Identities=27%  Similarity=0.360  Sum_probs=51.5

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      +.+++.++.+++.+|||||||+|.+++.+|++ |++|+|||+|++|++.|+++....+..
T Consensus        46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~  104 (292)
T d1xvaa_          46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKE  104 (292)
T ss_dssp             HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccc
Confidence            35566666677889999999999999999996 999999999999999999998877653

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=2.8e-09  Score=103.58  Aligned_cols=63  Identities=21%  Similarity=0.258  Sum_probs=57.2

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ....|+.+++++||++|||+|||+|.++..+|+.  .+++|+|+|+|+++++.|+++++..|+.+
T Consensus        91 d~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~  155 (266)
T d1o54a_          91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE  155 (266)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcccc
Confidence            3447899999999999999999999999999986  46899999999999999999999998753

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.83  E-value=1.6e-09  Score=101.70  Aligned_cols=54  Identities=17%  Similarity=0.142  Sum_probs=48.8

Q ss_pred             HHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          544 EKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       544 ~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      .+++++||++|||||||+|..+.++|+. ...+|+|||+|++|++.|+++++..+
T Consensus        50 ~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~  104 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN  104 (209)
T ss_dssp             CCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC
Confidence            3578999999999999999999999987 34699999999999999999998764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.6e-09  Score=101.80  Aligned_cols=57  Identities=14%  Similarity=0.029  Sum_probs=49.9

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      .+.+.+.+.+++|.+|||+|||.|..+.+||++ |++|||||+|+++++.|+++....
T Consensus        34 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~   90 (229)
T d2bzga1          34 KKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLS   90 (229)
T ss_dssp             HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhcc
Confidence            345556677889999999999999999999996 999999999999999999987543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.76  E-value=4.7e-09  Score=101.47  Aligned_cols=53  Identities=21%  Similarity=0.414  Sum_probs=46.4

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      -+++|++|||||||+|+.+..+++...++|+|||+|++|++.|++++++.+..
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~   73 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR   73 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC
Confidence            46789999999999999999999863468999999999999999999876643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=9.4e-10  Score=104.98  Aligned_cols=58  Identities=21%  Similarity=0.051  Sum_probs=48.6

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      +.+.+.+ ..+|.+|||||||+|..+.+++++.+.+|||||+|++|++.|+++++..+.
T Consensus        44 ~~la~~~-~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~  101 (229)
T d1zx0a1          44 HALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH  101 (229)
T ss_dssp             HHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS
T ss_pred             HHHHHhh-ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc
Confidence            3444444 468889999999999999999987567999999999999999999876553

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.71  E-value=8.8e-09  Score=98.78  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=49.0

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      .|+.+++++||++|||+|||+|.++..+|+.  .+.+|+++|+++++++.|++++++.+.
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~  135 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD  135 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999986  457999999999999999999988654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.70  E-value=5.2e-09  Score=99.48  Aligned_cols=55  Identities=13%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ++.+.++||++|||+|||+|..+.++|+. .+..|+|||+|+.|++.++++++..+
T Consensus        67 l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~  122 (230)
T d1g8sa_          67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE  122 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT
T ss_pred             HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc
Confidence            45677999999999999999999999997 45799999999999999999876543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2e-08  Score=95.04  Aligned_cols=62  Identities=19%  Similarity=0.270  Sum_probs=53.4

Q ss_pred             HHHHHHHHc--cCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          538 KHSLQIEKA--RVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       538 ~~~~l~~~l--~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ....+++.|  .+++|++|||||||+|..+..+|+.  ...+|+|||+++++++.|++++++.++.
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~  127 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT  127 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc
Confidence            344677777  7899999999999999999999886  3569999999999999999999887653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.66  E-value=1.5e-08  Score=97.97  Aligned_cols=65  Identities=11%  Similarity=0.078  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          531 LKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       531 l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      +.++.....+.+++.+...++.+|||||||+|.++..++.+...+|+|||+|++|++.|+++...
T Consensus        74 ~~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~  138 (254)
T d1xtpa_          74 VHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG  138 (254)
T ss_dssp             GHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT
T ss_pred             cchhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc
Confidence            34455556667888888888899999999999999998876667899999999999999988654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=2.1e-08  Score=96.67  Aligned_cols=59  Identities=19%  Similarity=0.304  Sum_probs=53.8

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      -...|+..++++||++|||+|||+|.++.++|+.  .+.+|+++|+++++++.|+++++..
T Consensus        84 D~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~  144 (264)
T d1i9ga_          84 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC  144 (264)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhh
Confidence            3457899999999999999999999999999987  4579999999999999999999875

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.61  E-value=2.9e-08  Score=92.24  Aligned_cols=59  Identities=12%  Similarity=0.084  Sum_probs=49.2

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .+....+--.|++|||+|||+|.+++.++.+...+|+|||+|+++++.|+++++..++.
T Consensus        37 ~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~   95 (201)
T d1wy7a1          37 WLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK   95 (201)
T ss_dssp             HHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS
T ss_pred             HHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC
Confidence            34455555578999999999999999988863359999999999999999999887764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.57  E-value=4.4e-08  Score=92.23  Aligned_cols=56  Identities=20%  Similarity=0.341  Sum_probs=50.8

Q ss_pred             HHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          539 HSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       539 ~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ...+++.+.+++|++|||||||+|.++..+|+. +.+|++||+++++++.|+++..+
T Consensus        59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~  114 (224)
T d1vbfa_          59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSY  114 (224)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhc
Confidence            346789999999999999999999999999985 88999999999999999988654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.56  E-value=1.8e-08  Score=95.37  Aligned_cols=55  Identities=25%  Similarity=0.255  Sum_probs=49.3

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhcc--CCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQT--GCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      ++.++++||++|||+|||+|..+.++|+..  +.+|+|+|+|++|++.++++++..+
T Consensus        66 l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~  122 (227)
T d1g8aa_          66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR  122 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT
T ss_pred             ccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC
Confidence            456789999999999999999999999973  5799999999999999999987654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.2e-08  Score=97.60  Aligned_cols=60  Identities=13%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      -...|+..++++||++|||+|||+|.++.++|+.  .+.+|+++|+++++++.|++++++.+
T Consensus        86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~  147 (324)
T d2b25a1          86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR  147 (324)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhh
Confidence            3457899999999999999999999999999987  35799999999999999999998753

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.55  E-value=6.1e-08  Score=90.68  Aligned_cols=63  Identities=22%  Similarity=0.313  Sum_probs=57.3

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ....+++.+++++|++|||||||+|..+..+|+..|.+|++||.++++++.|++++++.|+.+
T Consensus        66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~n  128 (215)
T d1jg1a_          66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN  128 (215)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             hHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCce
Confidence            445788999999999999999999999999998668889999999999999999999988754

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.53  E-value=4e-08  Score=93.01  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=39.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ++.+|||||||+|.++..++++ |.+|+|||+|++|++.|+++..
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~~   63 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK   63 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhcccc
Confidence            4668999999999999999986 8899999999999999998753

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.49  E-value=9e-08  Score=93.80  Aligned_cols=60  Identities=22%  Similarity=0.414  Sum_probs=49.9

Q ss_pred             HHHHHHHc-cCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          539 HSLQIEKA-RVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       539 ~~~l~~~l-~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ++.+++.+ .+.+..+|||||||+|.++..+++.  .+++|+|||+|++|++.|+++++..++
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~   77 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY   77 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc
Confidence            34455543 4566789999999999999999986  368999999999999999999987765

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=1.2e-07  Score=85.54  Aligned_cols=53  Identities=17%  Similarity=0.252  Sum_probs=48.7

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +.+|.+|||+|||+|.+++.++.+ |++|++||+|+++++.++++++..|++++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~   91 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGAR   91 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCE
T ss_pred             ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccc
Confidence            567889999999999999998886 89999999999999999999999988753

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=7.5e-08  Score=92.94  Aligned_cols=54  Identities=9%  Similarity=0.136  Sum_probs=49.9

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +++|++|||+|||+|.+++.+|++.+++|+++|+|++.++.++++++.+|++++
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~  158 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDR  158 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTT
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCce
Confidence            578999999999999999999987557999999999999999999999999864

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.44  E-value=1.3e-07  Score=91.21  Aligned_cols=61  Identities=21%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +.+++.+++.+..+|||||||+|.++..++++ ++.+++++|+ +++++.+++++.+.|+.++
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~r  131 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDR  131 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTT
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccc
Confidence            46788888888899999999999999999998 5789999998 5799999999999998754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=5.6e-07  Score=84.87  Aligned_cols=120  Identities=11%  Similarity=-0.086  Sum_probs=77.6

Q ss_pred             CCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhH-HhhhHHHHHHHHHhcCccccCCCCcEEEecCCcHhHHHHH
Q 036521           62 DRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGI-MSFSAFSILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKV  140 (602)
Q Consensus        62 ~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~-~~~p~~~~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~l  140 (602)
                      .+..++.+++++.++.+.+.+.+.. .+.........+. .......+..+....+   ......+...+||+++++++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~gG~~~l~~~l  242 (297)
T d2bcgg1         167 LDKNTMDEVYYKFGLGNSTKEFIGH-AMALWTNDDYLQQPARPSFERILLYCQSVA---RYGKSPYLYPMYGLGELPQGF  242 (297)
T ss_dssp             TTTSBHHHHHHHTTCCHHHHHHHHH-HTSCCSSSGGGGSBHHHHHHHHHHHHHHHH---HHSSCSEEEETTCTTHHHHHH
T ss_pred             ccchhhhhhhhhhccCHHHHHHHHH-HHhhhccccccchhhhhhhhhhhhhhhccc---ccccCcceeccCcHHHHHHHH
Confidence            4567999999999988887654432 2222222211111 1111111222221111   122345677889999999999


Q ss_pred             HHHHhcCCCeEEeCCceeEEEecCCe--EEEEeCCCcEEecCEEEEe
Q 036521          141 IALLESLGCQIKTGCEVCSVLQYDEG--RTEVRGDGFQGFYDGCIMA  185 (602)
Q Consensus       141 a~~l~~~g~~v~l~t~V~~i~~~~~g--v~v~~~~g~~~~ad~VI~A  185 (602)
                      ++.++++|++|+++++|++|..++++  +.+++.+|+++.||+||+.
T Consensus       243 ~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         243 ARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             HHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC
T ss_pred             HHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC
Confidence            99999999999999999999876543  5545567888999998875

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=2.4e-07  Score=90.00  Aligned_cols=58  Identities=22%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      ......+.+.+. .++.+|||||||+|.++..+++. .+.+|+|||+|++|++.|+++..
T Consensus        71 ~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~  129 (268)
T d1p91a_          71 DAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP  129 (268)
T ss_dssp             HHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc
Confidence            344445555554 45669999999999999999987 57899999999999999988753

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=2.5e-07  Score=85.83  Aligned_cols=51  Identities=29%  Similarity=0.379  Sum_probs=46.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++-.|||||||+|..++.+|++ ++..++|||+|+.+++.|.+++++.|+++
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N   80 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN   80 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC
Confidence            3447999999999999999998 68999999999999999999999999864

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.7e-07  Score=87.53  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=47.6

Q ss_pred             CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      ..++||||||+|.+++.+|++ ++++|+|+|+|+++++.|+++++..+++++
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~  113 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDL  113 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcc
Confidence            458999999999999999988 799999999999999999999999999875

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.33  E-value=3.7e-07  Score=91.05  Aligned_cols=53  Identities=25%  Similarity=0.266  Sum_probs=48.2

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +++|++|||+|||+|++++.+|.....+|+++|+|+++++.|+++++.+|+++
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~  195 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVED  195 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGG
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCc
Confidence            57899999999999999999998633489999999999999999999999865

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=3.1e-07  Score=91.96  Aligned_cols=59  Identities=22%  Similarity=0.391  Sum_probs=48.4

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      |.+...+.+|++|||||||+|.+++.+|+....+|+|+|.|+ +++.|++++++.++.++
T Consensus        30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~   88 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDK   88 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTT
T ss_pred             HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCcccc
Confidence            333344557999999999999999999986334899999996 88999999999988653

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.29  E-value=4.8e-07  Score=83.84  Aligned_cols=50  Identities=34%  Similarity=0.492  Sum_probs=46.1

Q ss_pred             CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +-.|||||||+|.++..+|+. ++..++|||+|+.++..|.+++++.++++
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N   82 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN   82 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc
Confidence            447999999999999999998 68999999999999999999999999864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=3.4e-07  Score=83.92  Aligned_cols=60  Identities=25%  Similarity=0.354  Sum_probs=53.9

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      +++.+++.+.+++|..+||++||+|+.+..++++ .+++|+|+|.+++|++.|+++.+..+
T Consensus        11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~   71 (192)
T d1m6ya2          11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS   71 (192)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc
Confidence            4557788999999999999999999999999987 57899999999999999999987654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.29  E-value=6.1e-07  Score=82.33  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=40.8

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      -.|++|||+|||+|.+++.++.....+|+|||+|+++++.|+++++.
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~   93 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG   93 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc
Confidence            36899999999999999988885235799999999999999998753

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.28  E-value=6.6e-07  Score=86.14  Aligned_cols=61  Identities=21%  Similarity=0.196  Sum_probs=54.3

Q ss_pred             HHHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      ..+++..++.+..+|||||||.|.++..++++ ++.+++++|+ +++++.|++++++.|+.++
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~r  132 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADR  132 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcce
Confidence            35677788888889999999999999999998 5789999998 7899999999999998765

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=8.1e-07  Score=85.87  Aligned_cols=58  Identities=12%  Similarity=0.358  Sum_probs=50.0

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      .++.... +.+.+|||+|||+|.+++.+|.+ ..++|+++|+|++.++.|+++++..+++
T Consensus       100 ~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~  158 (274)
T d2b3ta1         100 QALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK  158 (274)
T ss_dssp             HHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC
T ss_pred             hHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc
Confidence            4445443 45568999999999999999887 6889999999999999999999999985

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.28  E-value=7e-07  Score=78.76  Aligned_cols=51  Identities=20%  Similarity=0.209  Sum_probs=46.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .|.+|||+|||+|.+++.++.+ |+ +|++||+++++++.++++++..++.++
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~   65 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENR   65 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGG
T ss_pred             CCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcccccc
Confidence            5889999999999999999886 64 999999999999999999999887653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.28  E-value=1.1e-06  Score=86.20  Aligned_cols=81  Identities=15%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             cCCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          513 MDESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       513 ~~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+.......++|-+.     ...++.+...+..  ..+|.+|||++||+|++++++|.. |++||+||+|+..++.|+++
T Consensus       102 v~~~~~~~tG~f~dq-----r~nr~~~~~~~~~--~~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N  173 (309)
T d2igta1         102 GRFTAFRHVGVFPEQ-----IVHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKEN  173 (309)
T ss_dssp             EECCSSSCCSCCGGG-----HHHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHH
T ss_pred             EeccCCCccccccch-----hHHHHHHHHHHhh--ccCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHh
Confidence            344444556666431     1123333333333  457889999999999999999984 99999999999999999999


Q ss_pred             HHHcCCCCC
Q 036521          593 VNEAGLQVT  601 (602)
Q Consensus       593 ~~~~gl~~~  601 (602)
                      ++.+|+++.
T Consensus       174 ~~ln~~~~~  182 (309)
T d2igta1         174 QVLAGLEQA  182 (309)
T ss_dssp             HHHHTCTTS
T ss_pred             hhhhcccCC
Confidence            999998764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.26  E-value=3.2e-06  Score=81.96  Aligned_cols=70  Identities=9%  Similarity=0.059  Sum_probs=52.9

Q ss_pred             CCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe------EEEEe-----CCCcEEecCEEEEecChHHH
Q 036521          123 RPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG------RTEVR-----GDGFQGFYDGCIMAVHAPDA  191 (602)
Q Consensus       123 ~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g------v~v~~-----~~g~~~~ad~VI~A~p~~~a  191 (602)
                      ...++...+|++.++++|++.+.  +.+|+++++|++|..+.++      +.|..     ..++.+.||+||+|+|.+..
T Consensus       220 ~~~~~~~~~g~~~l~~~l~~~l~--~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l  297 (373)
T d1seza1         220 QRGSFSFLGGMQTLTDAICKDLR--EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDV  297 (373)
T ss_dssp             TCSCBEETTCTHHHHHHHHTTSC--TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHH
T ss_pred             cceeeeecccchHHHHHHHHHhc--cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHh
Confidence            34566789999999999999885  7799999999999886543      23322     13346789999999987665


Q ss_pred             Hhh
Q 036521          192 LRI  194 (602)
Q Consensus       192 ~~l  194 (602)
                      .++
T Consensus       298 ~~l  300 (373)
T d1seza1         298 KSM  300 (373)
T ss_dssp             HTS
T ss_pred             hhc
Confidence            543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=3.4e-07  Score=91.08  Aligned_cols=53  Identities=26%  Similarity=0.352  Sum_probs=45.1

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      .+.+|++|||||||+|.+++.+|+. | .+|+|||.|+ +...+++.++.+++.++
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~n~~~~~   83 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHV   83 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCTTT
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcH-HHhhhhhHHHHhCCccc
Confidence            4457899999999999999999996 6 5899999997 46888888888888753

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.24  E-value=3.8e-07  Score=90.64  Aligned_cols=51  Identities=25%  Similarity=0.238  Sum_probs=47.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+|++|||++||+|++++++|+ .+.+|+++|+|+.+++.|+++++.+|+++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~  194 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGN  194 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTT
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCC
Confidence            3689999999999999999987 47899999999999999999999999864

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=8e-07  Score=88.14  Aligned_cols=57  Identities=21%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      |.+...+.+|++|||||||+|.+++.+|+. |+ +|+|+|.|+.++ .|++.+++.++.+
T Consensus        27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~-~a~~~~~~~~~~~   84 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILY-QAMDIIRLNKLED   84 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHH-HHHHHHHHTTCTT
T ss_pred             HHhccccCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHH-HHHHHHHHhCCCc
Confidence            344446668999999999999999999996 64 899999999875 5777777777654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.23  E-value=6.9e-07  Score=84.58  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .+.++.|++.++++++++|||||||.|.++..++++ +.+|++|++++.+++..+++..
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~   64 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLV   64 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhh
Confidence            456678999999999999999999999999999985 8899999999999999998764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=3.4e-07  Score=85.05  Aligned_cols=39  Identities=26%  Similarity=0.306  Sum_probs=33.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .++.+|||||||+|.++..+++     ++|||+|++|++.|+++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~~-----~~giD~s~~~~~~a~~~   73 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLKI-----KIGVEPSERMAEIARKR   73 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHTC-----CEEEESCHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCcccccccce-----EEEEeCChhhccccccc
Confidence            3566899999999999887753     68999999999999875

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.21  E-value=5.6e-07  Score=84.58  Aligned_cols=58  Identities=24%  Similarity=0.436  Sum_probs=48.8

Q ss_pred             HHHHHHHc--cCCCCCeEEEEecCchHHHHHHHhcc---C----CEEEEEcCCHHHHHHHHHHHHHc
Q 036521          539 HSLQIEKA--RVSKGHGVLEIGCGWGTFAIEVVRQT---G----CNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       539 ~~~l~~~l--~l~~g~~vLDiGcG~G~~~~~la~~~---g----~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ...+++.|  .+++|++|||||||+|..+..+++-.   |    .+|++||++++.++.|++++...
T Consensus        67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~  133 (223)
T d1r18a_          67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD  133 (223)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhc
Confidence            34567776  78999999999999999998888752   2    48999999999999999987654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.4e-06  Score=82.38  Aligned_cols=51  Identities=12%  Similarity=0.047  Sum_probs=42.5

Q ss_pred             cCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcC
Q 036521          547 RVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAG  597 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~g  597 (602)
                      +...|.+|||||||+|.++...+.+...+|+|+|+|+.|++.+++++++.+
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~  101 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP  101 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCT
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCc
Confidence            445688999999999988766665556799999999999999999876543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.2e-07  Score=86.56  Aligned_cols=58  Identities=22%  Similarity=0.228  Sum_probs=43.6

Q ss_pred             HHHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhc-------cCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          538 KHSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQ-------TGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       538 ~~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~-------~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      .+..++.++. .+++.+|||||||+|.++..++++       .+.+++|||+|+.|++.|+++++.
T Consensus        27 ~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~   92 (280)
T d1jqea_          27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK   92 (280)
T ss_dssp             THHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhh
Confidence            3334444443 345568999999999998887654       134789999999999999999854

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=5.2e-06  Score=83.78  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          535 QMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       535 q~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ...+++.+++.+++.++++|||+-||.|.+++.+|++ +.+|+|||++++.++.|+++++.+|+++
T Consensus       197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n  261 (358)
T d1uwva2         197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQN  261 (358)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             hhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccccc
Confidence            3567778888889989999999999999999999995 8899999999999999999999999875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.99  E-value=5e-06  Score=79.96  Aligned_cols=52  Identities=17%  Similarity=0.261  Sum_probs=47.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +..+|||+|||+|..++.+++..+++|+++|+|++.++.|+++++..|+.++
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~  161 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDR  161 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTS
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCce
Confidence            3458999999999999999987889999999999999999999999998764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.96  E-value=6.6e-06  Score=81.29  Aligned_cols=52  Identities=15%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             CCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          548 VSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       548 l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+|++|||++||+|+++++++.. |+ +|++||+|+..++.|+++++.+|++.
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~  194 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDM  194 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCC
T ss_pred             hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccC
Confidence            457999999999999999998884 66 79999999999999999999999864

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.1e-05  Score=77.72  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +.++.|++.+++.++++|||||||.|.++..++++ +.+|++|++++.+++..+++....
T Consensus         8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~   66 (278)
T d1zq9a1           8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGT   66 (278)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhh
Confidence            45678899999999999999999999999999996 889999999999999999987654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.83  E-value=4.4e-07  Score=86.40  Aligned_cols=55  Identities=20%  Similarity=0.297  Sum_probs=49.6

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .++.|++.+++.++++|||||||+|.++..++++ +.+|++||+++++++.++++.
T Consensus        17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~   71 (245)
T d1yuba_          17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKL   71 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTT
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhh
Confidence            4567899999999999999999999999999996 899999999999988877654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=2.1e-05  Score=73.11  Aligned_cols=64  Identities=22%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          535 QMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       535 q~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      +-+.+..++...+  | .+|||||||+|..++.+|+.  .+.+|++||+++++++.|+++++.+|++++
T Consensus        44 ~G~lL~~lv~~~k--p-k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~  109 (214)
T d2cl5a1          44 KGQIMDAVIREYS--P-SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDK  109 (214)
T ss_dssp             HHHHHHHHHHHHC--C-SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHhhC--C-CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCcc
Confidence            3445566666554  3 59999999999999999986  478999999999999999999999998763

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=1e-05  Score=76.98  Aligned_cols=57  Identities=18%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .+.++.|++.+++.+++.|||||||.|.++..++++ +.+|++|++++.+++..+++.
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~   63 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHP   63 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHh
Confidence            355678899999999999999999999999999996 889999999999999987743

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.79  E-value=2e-05  Score=71.21  Aligned_cols=60  Identities=20%  Similarity=0.150  Sum_probs=50.3

Q ss_pred             HHHHHHcc-CCCCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          540 SLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       540 ~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      +.+...++ .-+|.+|||++||+|.+++.++.+ |+ +|++||.|++.++.++++++..+..+
T Consensus        30 ealFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~   91 (182)
T d2fhpa1          30 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPE   91 (182)
T ss_dssp             HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHhcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            34455544 347899999999999999999997 65 79999999999999999999887654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=2.4e-05  Score=70.78  Aligned_cols=50  Identities=12%  Similarity=0.042  Sum_probs=45.0

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++.+|||++||+|.+++.++.+ |+ +|+.||.|++.++.++++++..+.++
T Consensus        43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~   93 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKAGN   93 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCS
T ss_pred             chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhccccc
Confidence            5779999999999999999987 65 89999999999999999998877654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=9.4e-05  Score=68.67  Aligned_cols=63  Identities=10%  Similarity=0.012  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      -+.+..+++..+   -++|||||||+|.-++++|+.  .+.+|+++|++++..+.|++..+++|++++
T Consensus        48 g~lL~~L~~~~~---~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~  112 (219)
T d2avda1          48 AQLLANLARLIQ---AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHK  112 (219)
T ss_dssp             HHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHccC---CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccce
Confidence            345555665543   459999999999999999986  368999999999999999999999999864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.29  E-value=0.00015  Score=65.18  Aligned_cols=54  Identities=15%  Similarity=0.124  Sum_probs=48.6

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      +++.+++.+.+++|+.++|..||.|+.+..+.++ +++|+|+|..+++++.|+++
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~   59 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL   59 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc
Confidence            3457788889999999999999999999999996 78999999999999999864

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.23  E-value=0.00033  Score=65.19  Aligned_cols=63  Identities=13%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQVT  601 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~~  601 (602)
                      -+.+..+++..+   -++||||||+.|.-++++|+.  .+++|+.+|++++..+.|++..+++|+.++
T Consensus        48 g~~L~~L~~~~~---~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~  112 (227)
T d1susa1          48 GQFLSMLLKLIN---AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHK  112 (227)
T ss_dssp             HHHHHHHHHHHT---CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHhcC---CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccc
Confidence            345556666554   459999999999999999975  368999999999999999999999998764

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=0.00032  Score=63.06  Aligned_cols=50  Identities=12%  Similarity=0.099  Sum_probs=46.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhccCC-EEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .|.+|||+.||+|.++++++.+ |+ +|+.||.+++.++..+++++..++++
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~   93 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSS   93 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCT
T ss_pred             ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhcccc
Confidence            5779999999999999999997 65 99999999999999999999988765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.07  E-value=0.0008  Score=62.62  Aligned_cols=49  Identities=12%  Similarity=-0.079  Sum_probs=42.8

Q ss_pred             CCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHHHhhc
Q 036521          147 LGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDALRIL  195 (602)
Q Consensus       147 ~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a~~ll  195 (602)
                      .+..++++++|..|...++++.|++.+|+.+.+|++++++|.....+.+
T Consensus       223 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~  271 (347)
T d1b5qa1         223 VDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDL  271 (347)
T ss_dssp             CCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTS
T ss_pred             cccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcc
Confidence            3568999999999999999999999999889999999999987765443

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.06  E-value=0.00075  Score=55.72  Aligned_cols=54  Identities=20%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCC-eEEEEeCCCcEEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDE-GRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~-gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ...+.+.+.+.++++|.++++++.|++|+..++ .+.|++++|+++.||.||+|+
T Consensus        63 d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          63 DHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             chHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            467888899999999999999999999997665 478889999889999999986

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00076  Score=57.41  Aligned_cols=54  Identities=19%  Similarity=0.021  Sum_probs=48.7

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ...+.+.+.+.+.++|.++++++.|.+|+.+++++.|++.+|+++.+|.||+|+
T Consensus        82 ~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~  135 (137)
T d1m6ia2          82 PEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAV  135 (137)
T ss_dssp             CHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECC
T ss_pred             CHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEee
Confidence            345777888889999999999999999999988999999999999999999996

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.0014  Score=53.89  Aligned_cols=54  Identities=20%  Similarity=0.211  Sum_probs=47.3

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~~ad~VI~A~  186 (602)
                      ...+.+.+.+.++++|.++++++.|++|..++++ ++|...+|+++.+|.||+|+
T Consensus        61 d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~  115 (116)
T d1gesa2          61 DPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI  115 (116)
T ss_dssp             CHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             chhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEec
Confidence            4567788888888889999999999999987664 78888999899999999986

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.76  E-value=0.00082  Score=61.85  Aligned_cols=51  Identities=22%  Similarity=0.421  Sum_probs=42.5

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKY  588 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~  588 (602)
                      ..+.+++.+..++|++|||.|||+|.++..+.++  ...+++|+|+++..++.
T Consensus         7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~   59 (223)
T d2ih2a1           7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL   59 (223)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC
T ss_pred             HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh
Confidence            4567888899999999999999999999888765  35689999999876544

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.71  E-value=0.0019  Score=53.11  Aligned_cols=54  Identities=19%  Similarity=0.270  Sum_probs=47.2

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A~  186 (602)
                      ...+.+.+.+.+.++|.+|++++.|++|+..++++ .|+..+|+++.||.||+|+
T Consensus        61 d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~  115 (117)
T d1feca2          61 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI  115 (117)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             cchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEec
Confidence            45678888888999999999999999999877764 6788899899999999996

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00075  Score=59.53  Aligned_cols=51  Identities=18%  Similarity=0.206  Sum_probs=44.7

Q ss_pred             HHHHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+++.++++|++||-+||| .|.++..+|+..|++|+++|.|++.++.|++.
T Consensus        19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            3567899999999999999 77888888888899999999999999988764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=96.69  E-value=0.0031  Score=58.71  Aligned_cols=80  Identities=19%  Similarity=0.242  Sum_probs=61.0

Q ss_pred             HHHHHHhcCccc-cCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE-EEEeCCCcEEecCEEEEe
Q 036521          108 ILSFYRNHHLLQ-LFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR-TEVRGDGFQGFYDGCIMA  185 (602)
Q Consensus       108 ~l~~~~~~g~~~-~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv-~v~~~~g~~~~ad~VI~A  185 (602)
                      +..++...+... .....+.++.....+.+.+.|.+.+.+.|.+|+++++|++|..+++.+ .|++.+|+++.||.||+|
T Consensus        83 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~A  162 (251)
T d2i0za1          83 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIA  162 (251)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEEC
T ss_pred             HHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEc
Confidence            444555555321 122345666667778899999999988899999999999999988776 477788888999999999


Q ss_pred             cC
Q 036521          186 VH  187 (602)
Q Consensus       186 ~p  187 (602)
                      +=
T Consensus       163 tG  164 (251)
T d2i0za1         163 VG  164 (251)
T ss_dssp             CC
T ss_pred             cC
Confidence            84

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.59  E-value=0.001  Score=65.43  Aligned_cols=57  Identities=14%  Similarity=0.235  Sum_probs=45.9

Q ss_pred             HHHccCCCCCeEEEEecCchHHHHHHHhc------cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          543 IEKARVSKGHGVLEIGCGWGTFAIEVVRQ------TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG~G~~~~~la~~------~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ...+..+++.+|||.+||+|++...+.++      ...+++|+|+++.+++.|+.+....+..
T Consensus       110 ~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~  172 (328)
T d2f8la1         110 EKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK  172 (328)
T ss_dssp             HHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             HHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh
Confidence            33446678889999999999999988653      2347999999999999999888766553

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.55  E-value=0.0022  Score=52.99  Aligned_cols=56  Identities=20%  Similarity=0.157  Sum_probs=46.8

Q ss_pred             CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCC---cEEecCEEEEec
Q 036521          131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDG---FQGFYDGCIMAV  186 (602)
Q Consensus       131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g---~~~~ad~VI~A~  186 (602)
                      +-..++.+.+.+.+.++|.+++++++|++|+.+++++.|+..++   +++.||.||+|+
T Consensus        60 ~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAv  118 (119)
T d3lada2          60 AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAV  118 (119)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECS
T ss_pred             cccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEee
Confidence            33567888889999888999999999999999999988775433   468999999996

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0028  Score=57.68  Aligned_cols=51  Identities=16%  Similarity=0.282  Sum_probs=46.2

Q ss_pred             CCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ++.+|||||||.|..++-+|-. ++++|+.||.+..=+.+.++-+.+.||++
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n  116 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN  116 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc
Confidence            4569999999999999999864 68999999999999999999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.50  E-value=0.0023  Score=56.24  Aligned_cols=51  Identities=25%  Similarity=0.294  Sum_probs=44.7

Q ss_pred             HHHHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+++.++++|++||-+||| .|.+++.+|+..|++|+++|.+++-++.|++.
T Consensus        18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc
Confidence            4677889999999999999 67777778887899999999999999999874

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.43  E-value=0.0038  Score=51.30  Aligned_cols=54  Identities=19%  Similarity=0.150  Sum_probs=46.2

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe-EEEEeCCCcEE-ecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG-RTEVRGDGFQG-FYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g-v~v~~~~g~~~-~ad~VI~A~  186 (602)
                      -..+.+.+.+.+.++|.++++++.|++|+..+++ +.|++.+|+.. .+|.||+|+
T Consensus        62 d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          62 DESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             cHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            4678888888998889999999999999976654 78888999876 479999986

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=96.38  E-value=0.0022  Score=60.98  Aligned_cols=55  Identities=16%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChH
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAP  189 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~  189 (602)
                      ..+...+.+.+.++|.+++.+++|++|+..+++|.|.+++| ++.||+||+|+=+.
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~  204 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAW  204 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGG
T ss_pred             cccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCc
Confidence            46778888888888999999999999999999999999888 69999999998543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.34  E-value=0.0033  Score=56.73  Aligned_cols=51  Identities=25%  Similarity=0.192  Sum_probs=43.1

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      .++++++++|++||.+|||. |.++..+|+..|+ +|+.+|.+++-++.|++.
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            35778999999999999998 5577777776565 899999999999998764

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0039  Score=60.06  Aligned_cols=59  Identities=14%  Similarity=0.109  Sum_probs=51.9

Q ss_pred             HHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          542 QIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ....++.++|++|||++||.|+-+.++|..  .+.+|+++|+|+.-++..++++++.|+.+
T Consensus        86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~  146 (293)
T d2b9ea1          86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC  146 (293)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc
Confidence            345568899999999999999999999875  35799999999999999999999999864

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=96.20  E-value=0.0073  Score=56.47  Aligned_cols=80  Identities=14%  Similarity=0.066  Sum_probs=56.1

Q ss_pred             HHHHHHhcCccccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE---EEEeCCCcEEecCEEEE
Q 036521          108 ILSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR---TEVRGDGFQGFYDGCIM  184 (602)
Q Consensus       108 ~l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv---~v~~~~g~~~~ad~VI~  184 (602)
                      ++.++...+..........+......+.+.+.|.+.+.+.|.+|+++++|++|++.++++   .++..++++++||+||+
T Consensus        83 ~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIi  162 (253)
T d2gqfa1          83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIV  162 (253)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEE
T ss_pred             hhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEE
Confidence            445555555322222223344566778898999888887899999999999999876653   22344566899999999


Q ss_pred             ecC
Q 036521          185 AVH  187 (602)
Q Consensus       185 A~p  187 (602)
                      |+=
T Consensus       163 AtG  165 (253)
T d2gqfa1         163 ATG  165 (253)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            984

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.19  E-value=0.021  Score=58.28  Aligned_cols=140  Identities=13%  Similarity=0.048  Sum_probs=87.1

Q ss_pred             HHHHHhhHHHHHHHHhhcCCCCCCCCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHHHHHHHhcCcc
Q 036521           39 REIMKFKDDVLCYLEELENNPDIDRDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSILSFYRNHHLL  118 (602)
Q Consensus        39 ~~i~rf~~~~~~~l~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~l~~~~~~g~~  118 (602)
                      +.+++|.+.+..+...+... ...+..|+.+||+++++++...+.++..+.  ++..+ .....-.+..+..|+..-|..
T Consensus       288 R~lmkFl~~v~~~~~~~~~~-~~~~~~~~~e~l~~~~l~~~~~~~i~~aia--l~~~~-~~~~~~~l~ri~~yl~Slg~y  363 (491)
T d1vg0a1         288 RMLMKFLTFCVEYEEHPDEY-RAYEGTTFSEYLKTQKLTPNLQYFVLHSIA--MTSET-TSCTVDGLKATKKFLQCLGRY  363 (491)
T ss_dssp             HHHHHHHHHHHTGGGCHHHH-HTTTTSBHHHHHTTSSSCHHHHHHHHHHTT--C--CC-SCBHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHhhccCCcccc-ccccCCcHHHHHHHcCCChHHHHHHHhhee--ccCCC-CccHHHHHHHHHHHHHHHHhh
Confidence            45666766665543322111 123578999999999999998876654332  22211 111111222344455543322


Q ss_pred             ccCCCCcEEEecCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecC--CeE-EEEeCCCcEEecCEEEEe
Q 036521          119 QLFGRPQWLTVRSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYD--EGR-TEVRGDGFQGFYDGCIMA  185 (602)
Q Consensus       119 ~~~~~~~~~~~~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~--~gv-~v~~~~g~~~~ad~VI~A  185 (602)
                        .+.+.+++.= |..+|+++.+....=.|+...|+++|.+|..+.  +.+ .|...+|+++.+++||+.
T Consensus       364 --G~spflyp~Y-G~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~  430 (491)
T d1vg0a1         364 --GNTPFLFPLY-GQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE  430 (491)
T ss_dssp             --SSSSEEEETT-CTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred             --CCCCeEeecC-CcchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEEC
Confidence              2455666655 558999888776655699999999999998753  334 456778889999998876

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.17  E-value=0.0018  Score=59.98  Aligned_cols=46  Identities=22%  Similarity=0.311  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITL  581 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~  581 (602)
                      ..|+.++.++..++++.+|+|+|||.|+.+.+++++. ...|.|+|+
T Consensus        52 ~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          52 SAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             HHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            3466778888889999999999999999999999873 457888887

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.13  E-value=0.0044  Score=54.72  Aligned_cols=51  Identities=24%  Similarity=0.308  Sum_probs=45.0

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      .++..++++|++||-+|||. |.+++.+|+..|+ +|+++|.+++-++.|++.
T Consensus        19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            46778999999999999997 8888999998887 799999999999988764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.07  E-value=0.0031  Score=59.64  Aligned_cols=55  Identities=15%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+...|++.+.++|.+|+.+++|++|+++++++.|.+++| ++.||+||+|+=+
T Consensus       150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~  204 (276)
T d1ryia1         150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGV  204 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGG
T ss_pred             cccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCc
Confidence            456778888888888999999999999999988899999888 6999999999843

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.0041  Score=55.30  Aligned_cols=50  Identities=32%  Similarity=0.367  Sum_probs=42.8

Q ss_pred             HHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          543 IEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       543 ~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      .+...+++|++||-+||| .|.+++.+|+..|+ +|+++|.+++.++.|++.
T Consensus        21 ~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          21 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            344578999999999999 47888889988898 899999999999998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.01  E-value=0.006  Score=53.17  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=43.2

Q ss_pred             HHHHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+++.++++|++||-+||| .|.++..+|+..|++|+++|.+++.++.+++.
T Consensus        19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            3567889999999999998 46666777887899999999999999988753

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0035  Score=55.72  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=38.2

Q ss_pred             HHHHHHHHccC-CCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCH
Q 036521          538 KHSLQIEKARV-SKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSA  583 (602)
Q Consensus       538 ~~~~l~~~l~l-~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~  583 (602)
                      |+..|.++.++ +++++|||+||+.|+++.+++++  ....|+|+|+.+
T Consensus         9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_           9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            55667777664 78999999999999999999886  346899999865

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.81  E-value=0.008  Score=61.04  Aligned_cols=64  Identities=16%  Similarity=0.209  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhcc--------------CCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          536 MRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQT--------------GCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       536 ~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~--------------g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ....+.+++.+..+++.+|||-.||+|++.+.+.++.              ...+.|+|+++.....|+.+.--.|..
T Consensus       148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            4566788888888889999999999999999887641              134899999999999999988777765

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.80  E-value=0.008  Score=56.12  Aligned_cols=45  Identities=11%  Similarity=0.077  Sum_probs=36.9

Q ss_pred             HHHHHHHHcc-CCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCC
Q 036521          538 KHSLQIEKAR-VSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLS  582 (602)
Q Consensus       538 ~~~~l~~~l~-l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S  582 (602)
                      ....+++... .....+|||||||.|.+++.++++ ++.+++..|+.
T Consensus        68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp  114 (244)
T d1fp1d2          68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP  114 (244)
T ss_dssp             HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred             HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch
Confidence            3456677776 355589999999999999999988 68999999984

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.0078  Score=58.67  Aligned_cols=60  Identities=13%  Similarity=0.104  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHccCC------CCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHH
Q 036521          536 MRKHSLQIEKARVS------KGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       536 ~~~~~~l~~~l~l~------~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ...++.|++.++++      +++.|||||.|.|.++..+.+..+ .+|++|++++..+++.+++...
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~   89 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG   89 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC
Confidence            45566788887765      467899999999999999987533 4899999999999999887543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.62  E-value=0.01  Score=48.48  Aligned_cols=52  Identities=13%  Similarity=0.086  Sum_probs=43.6

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeC-CC--cEEecCEEEEe
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRG-DG--FQGFYDGCIMA  185 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~-~g--~~~~ad~VI~A  185 (602)
                      .++.+.+.+.+.++|.+|++++.|++|+.+++++.|+.. +|  +++.||.||+.
T Consensus        63 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            567888889999999999999999999999999877653 44  36899999974

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0082  Score=52.77  Aligned_cols=51  Identities=29%  Similarity=0.302  Sum_probs=43.7

Q ss_pred             HHHHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+.+..++++|++||-+|+  |.|..++.+|+..|++|++++-|++.++.+++
T Consensus        19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc
Confidence            4456778999999999997  57888899998889999999999988888765

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.59  E-value=0.01  Score=57.53  Aligned_cols=60  Identities=8%  Similarity=0.073  Sum_probs=52.3

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ--TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~--~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .....+++++|++|||++||.|+=+.+++..  ....++++|+++.-++..+++.++.|+.+
T Consensus       107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~  168 (313)
T d1ixka_         107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN  168 (313)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS
T ss_pred             chhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc
Confidence            3456678899999999999999999999876  35689999999999999999999988753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.58  E-value=0.0073  Score=53.28  Aligned_cols=53  Identities=25%  Similarity=0.326  Sum_probs=45.1

Q ss_pred             HHHHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      ..+.+..++++|++||-+|||. |.+++.+|+..|+ +|+.+|.+++-++.|++.
T Consensus        18 ~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          18 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            3456778899999999999997 8888888888887 788999999998888774

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0065  Score=58.13  Aligned_cols=60  Identities=8%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      ..+..++.++|++|||+++|.|+=+.++|+. .+.+|+++|+|+.-++..+++++..|+++
T Consensus        93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~  153 (284)
T d1sqga2          93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA  153 (284)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC
T ss_pred             ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc
Confidence            3456678899999999999999999999976 34789999999999999999999999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.012  Score=51.47  Aligned_cols=52  Identities=29%  Similarity=0.342  Sum_probs=42.6

Q ss_pred             HHHHHccCCCCCeEEEEecCc-hHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      +.+++.++++|++||=+|||. |.++..+++..|+ +|+++|.+++.++.|++.
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            446778999999999999985 4455666766788 899999999999998763

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.51  E-value=0.011  Score=55.15  Aligned_cols=45  Identities=13%  Similarity=0.137  Sum_probs=36.3

Q ss_pred             HHHHHHHccCCC-CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCH
Q 036521          539 HSLQIEKARVSK-GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSA  583 (602)
Q Consensus       539 ~~~l~~~l~l~~-g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~  583 (602)
                      ...+++.....+ ..+|||||||.|..++.++++ ++.++++.|+.+
T Consensus        69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~  115 (243)
T d1kyza2          69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH  115 (243)
T ss_dssp             HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH
Confidence            345566665434 478999999999999999998 689999999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.48  E-value=0.016  Score=48.45  Aligned_cols=52  Identities=21%  Similarity=0.197  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCe--E-EEEeCCCcEEecCEEEEec
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEG--R-TEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g--v-~v~~~~g~~~~ad~VI~A~  186 (602)
                      .+.+.+.+.+.++|.++++++.|++|+...++  + .|.+.+|+++.+|.||+|+
T Consensus        78 ~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~  132 (133)
T d1q1ra2          78 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI  132 (133)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECC
T ss_pred             hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEee
Confidence            45566667777789999999999999876443  3 4678899889999999986

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.41  E-value=0.014  Score=54.23  Aligned_cols=57  Identities=26%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHH
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNE  595 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~  595 (602)
                      ..++.+++..- .+|+.|||-=||+|..+..+.+ .|-+.+|+|++++-++.|++|+++
T Consensus       200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~-~~R~~ig~El~~~y~~~a~~Rl~~  256 (256)
T d1g60a_         200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLNQ  256 (256)
T ss_dssp             HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHcC
Confidence            45566776663 7899999999999999986555 699999999999999999999863

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.38  E-value=0.014  Score=55.89  Aligned_cols=55  Identities=20%  Similarity=0.074  Sum_probs=45.8

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE-EEeCCCcEEecCEEEEecCh
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT-EVRGDGFQGFYDGCIMAVHA  188 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~-v~~~~g~~~~ad~VI~A~p~  188 (602)
                      ...+...+++...++|.+|+.+++|++|..+++++. |.+++| ++.||+||+|+=+
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~  202 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGF  202 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGG
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecch
Confidence            345677777777778999999999999999998864 778777 7999999999843

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.013  Score=48.34  Aligned_cols=54  Identities=17%  Similarity=0.076  Sum_probs=42.3

Q ss_pred             CcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeE--EEEeCCC-----cEEecCEEEEe
Q 036521          132 RSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGR--TEVRGDG-----FQGFYDGCIMA  185 (602)
Q Consensus       132 G~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv--~v~~~~g-----~~~~ad~VI~A  185 (602)
                      --.++.+.+.+.++++|.+|+++++|++++..+++.  .++..++     +++.+|.||+|
T Consensus        62 ~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          62 MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            345788888888988899999999999999887764  4443322     36799999987

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.34  E-value=0.011  Score=48.92  Aligned_cols=54  Identities=15%  Similarity=0.047  Sum_probs=45.3

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe--CCC--cEEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR--GDG--FQGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~--~~g--~~~~ad~VI~A~  186 (602)
                      -..+.+.+.+.+.++|.+++++++|.+++.+++++.|+.  .+|  +++.+|.||+|+
T Consensus        66 d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~  123 (125)
T d1ojta2          66 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAA  123 (125)
T ss_dssp             CHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECC
T ss_pred             hhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEec
Confidence            457788889999888999999999999999999887664  333  368999999996

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.34  E-value=0.0096  Score=59.13  Aligned_cols=51  Identities=14%  Similarity=-0.089  Sum_probs=45.1

Q ss_pred             CCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .+.+|||..||+|..++++|.+.| .+|+.+|+|++.++.++++++.+++++
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~   96 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGE   96 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSC
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccc
Confidence            467999999999999998887644 489999999999999999999988754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.29  E-value=0.012  Score=48.57  Aligned_cols=56  Identities=16%  Similarity=0.076  Sum_probs=45.0

Q ss_pred             CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe--C-CCc--EEecCEEEEec
Q 036521          131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR--G-DGF--QGFYDGCIMAV  186 (602)
Q Consensus       131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~--~-~g~--~~~ad~VI~A~  186 (602)
                      +-...+.+.+.+.+.++|.+|++++.|.+|+..+++++|+.  . +|+  ++.+|.|++|.
T Consensus        63 ~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          63 TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             TSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            33467888899999999999999999999999888876543  2 333  57999999984

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=95.29  E-value=0.009  Score=55.63  Aligned_cols=56  Identities=11%  Similarity=0.138  Sum_probs=46.6

Q ss_pred             HHHHHHccCCCCC--eEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          540 SLQIEKARVSKGH--GVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       540 ~~l~~~l~l~~g~--~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      +.+.+.++++++.  +|||.-||.|.-+..+|.. ||+||+|+-|+......++..+.+
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~  133 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARG  133 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHH
Confidence            3677788887774  8999999999999999985 999999999998877776655443

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.25  E-value=0.009  Score=57.59  Aligned_cols=60  Identities=12%  Similarity=0.145  Sum_probs=49.5

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      ..++++++.. -.+|+.|||.-||+|..+..+.+ .|-+.+|+|+|++.++.|++|+.+...
T Consensus       238 ~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~-lgR~~Ig~El~~~y~~~a~~Rl~~~~~  297 (320)
T d1booa_         238 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLDNNI  297 (320)
T ss_dssp             HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             HHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHHHhccc
Confidence            4455666655 46899999999999999987655 699999999999999999998765543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.012  Score=51.36  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=43.8

Q ss_pred             HHHHccCCCCCeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+++.++++|++||=+||| -|.+++.+|+..|++++++|.+++.++.+++.
T Consensus        22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc
Confidence            4577899999999999998 47788888888899999999999988887653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.13  E-value=0.012  Score=51.84  Aligned_cols=52  Identities=19%  Similarity=0.271  Sum_probs=42.8

Q ss_pred             HHHHHccCCCCCeEEEEecCch-HHHHHHHhccC-CEEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWG-TFAIEVVRQTG-CNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G-~~~~~la~~~g-~~v~gid~S~~~l~~a~~~  592 (602)
                      .+.+..++++|+.||=+|||.. .+++.+++..| .+|+++|.+++-++.|++.
T Consensus        20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            3567788999999999999954 44566677677 5899999999999999876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.09  E-value=0.018  Score=47.39  Aligned_cols=52  Identities=19%  Similarity=0.065  Sum_probs=41.6

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ..+.+.+.+.+.++|.++++++.|.+|+.++ .+.++..+|+++.||.||+|+
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEGDG-RVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEECSS-BCCEEEESSCEEECSEEEECS
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEcCC-CEEEEEeCCCEEECCEEEEEC
Confidence            4577888888888899999999999998754 343334567689999999985

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.02  E-value=0.024  Score=49.12  Aligned_cols=51  Identities=22%  Similarity=0.327  Sum_probs=42.4

Q ss_pred             HHHHccCCCCCeEEEEecCc-hHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCGW-GTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG~-G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .++..++++|++||=+|||. |.+++.+++..|++|+++|.+++.++.+++.
T Consensus        19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            45677899999999999995 5555667777899999999999999888763

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.94  E-value=0.01  Score=53.18  Aligned_cols=41  Identities=17%  Similarity=0.083  Sum_probs=31.8

Q ss_pred             CCeEEEEecCchHH----HHHHHhc-----cCCEEEEEcCCHHHHHHHHH
Q 036521          551 GHGVLEIGCGWGTF----AIEVVRQ-----TGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       551 g~~vLDiGcG~G~~----~~~la~~-----~g~~v~gid~S~~~l~~a~~  591 (602)
                      .-|||++|||+|.-    ++.+.+.     ...+|+|+|+|+..++.|++
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            35999999999984    4444432     12479999999999999985

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0064  Score=58.48  Aligned_cols=34  Identities=15%  Similarity=0.097  Sum_probs=28.6

Q ss_pred             cCCCCeEEeccccC---CCCChhHHHHHHHHHHHhcC
Q 036521          306 QGKRGIWFCEAYQG---YGFHEDGLKAGMIAAHGVLG  339 (602)
Q Consensus       306 qg~~gl~~aG~~~g---~g~~E~av~SG~~aA~~ll~  339 (602)
                      +..++|||||+++.   .|.+|+|+.||++||++|+.
T Consensus       409 ~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~  445 (449)
T d2dw4a2         409 QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD  445 (449)
T ss_dssp             -CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHH
Confidence            45689999999973   36799999999999999964

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.85  E-value=0.015  Score=51.05  Aligned_cols=52  Identities=21%  Similarity=0.270  Sum_probs=41.7

Q ss_pred             HHHHHccCCCCCeEEEEecCchHH-HHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTF-AIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~-~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      .+.+..++++|++||-+|||..++ +..+++..|+ +|+++|.+++-++.|++.
T Consensus        18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            456778899999999999996554 4556666675 899999999999998763

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.80  E-value=0.023  Score=53.47  Aligned_cols=58  Identities=16%  Similarity=0.098  Sum_probs=49.6

Q ss_pred             HHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHc
Q 036521          537 RKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEA  596 (602)
Q Consensus       537 ~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~  596 (602)
                      ..++++++.. -.+|+.|||-=||+|..++.+.+ .|-+.+|+|++++..+.|++|++..
T Consensus       195 ~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~-lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4566677765 47899999999999999986655 6999999999999999999999764

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=94.72  E-value=0.041  Score=50.69  Aligned_cols=52  Identities=12%  Similarity=0.143  Sum_probs=46.5

Q ss_pred             CCCCeEEEEecCchHHHHHHHhc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLSAEQLKYAEMKVNEAGLQV  600 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S~~~l~~a~~~~~~~gl~~  600 (602)
                      .++.+|+|||+|.|..++-+|-. ++.+|+-+|-+..=.++.+.-+++.||++
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n  121 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN  121 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC
Confidence            35679999999999999999864 68999999999999999999999999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.46  E-value=0.046  Score=44.68  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=40.7

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ...+.+.+.+.+.++|.++++++.|+++..  +  .|+..+|+++.+|.||+|+
T Consensus        71 ~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~--~--~v~l~dg~~i~~D~vi~a~  120 (121)
T d1d7ya2          71 PATLADFVARYHAAQGVDLRFERSVTGSVD--G--VVLLDDGTRIAADMVVVGI  120 (121)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEET--T--EEEETTSCEEECSEEEECS
T ss_pred             CHHHHHHHHHHHHHCCcEEEeCCEEEEEeC--C--EEEECCCCEEECCEEEEee
Confidence            346677888888888999999999998763  2  3556788899999999986

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=94.32  E-value=0.055  Score=52.03  Aligned_cols=46  Identities=20%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             CCCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +.-++||.||.|.|+.+..+.+.. ..+|+.||++++.++.|++...
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~  122 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP  122 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCc
Confidence            344699999999999999998863 5799999999999999998764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.28  E-value=0.018  Score=50.40  Aligned_cols=50  Identities=26%  Similarity=0.363  Sum_probs=42.3

Q ss_pred             HHHHccCCCCCeEEEEec-C-chHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGC-G-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGc-G-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+++.++++|++||=.|. | .|.+++.+|+..|++|++++-|++.++.+++
T Consensus        19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~   70 (171)
T d1iz0a2          19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA   70 (171)
T ss_dssp             HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc
Confidence            456788999999999984 4 4788888998889999999999988887765

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.22  E-value=0.047  Score=51.63  Aligned_cols=45  Identities=20%  Similarity=0.201  Sum_probs=38.9

Q ss_pred             CCCCeEEEEecCchHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          549 SKGHGVLEIGCGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       549 ~~g~~vLDiGcG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      ++..+||.||+|.|..+..+.++...+|+.|||+++.++.|++-.
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f  115 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI  115 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhh
Confidence            345699999999999999988865569999999999999998754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.031  Score=48.89  Aligned_cols=51  Identities=14%  Similarity=0.098  Sum_probs=43.2

Q ss_pred             HHHHccCCCCCeEEEEecC--chHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          542 QIEKARVSKGHGVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       542 l~~~l~l~~g~~vLDiGcG--~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      +.+..++++|++||=.|+|  .|.+++.+|+..|++|++++.|++.++.+++.
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc
Confidence            3455678999999999666  67888999998999999999999999988764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.16  E-value=0.039  Score=44.88  Aligned_cols=56  Identities=14%  Similarity=0.182  Sum_probs=42.5

Q ss_pred             CCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEE--E---EeCCCcEEecCEEEEec
Q 036521          131 SRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRT--E---VRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       131 gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~--v---~~~~g~~~~ad~VI~A~  186 (602)
                      +-...+.+.+.+.+.++|.++++++.|.+|+.++++..  +   ...+++++.||.||+|+
T Consensus        60 ~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~  120 (121)
T d1mo9a2          60 IKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGL  120 (121)
T ss_dssp             CCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECC
T ss_pred             ccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEE
Confidence            33446677788888888999999999999999877632  2   12345578999999986

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.044  Score=56.88  Aligned_cols=87  Identities=15%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             ccchHHHHhhcCCC---Cccc-ccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc---c---
Q 036521          503 DLSNELFALFMDES---MTYS-CPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ---T---  572 (602)
Q Consensus       503 d~~~~~y~~~~~~~---~~ys-~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~---~---  572 (602)
                      |...+.|+.++...   ..-. ..||.+         +...+.|++.+..+++.+|+|-.||+|++.+.+.+.   .   
T Consensus       122 D~lG~~YE~ll~~~~~~~~~~~GqfyTP---------~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~  192 (524)
T d2ar0a1         122 DDFGDMYEGLLQKNANETKSGAGQYFTP---------RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND  192 (524)
T ss_dssp             -----------------------CCCCC---------HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTT
T ss_pred             hHHHHHHHHHHHHHHhhhccccchhccc---------cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCc
Confidence            55667787777432   1122 235543         456678888888889999999999999999877653   1   


Q ss_pred             -------------CCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          573 -------------GCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       573 -------------g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                                   ...++|+|+++.+...|+-+.--.|.
T Consensus       193 ~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~  231 (524)
T d2ar0a1         193 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  231 (524)
T ss_dssp             TTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             ccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence                         12589999999999999988765554

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.065  Score=43.97  Aligned_cols=54  Identities=17%  Similarity=0.032  Sum_probs=43.5

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEe---CCCc------EEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVR---GDGF------QGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~---~~g~------~~~ad~VI~A~  186 (602)
                      -..+.+.+.+.+.++|.++++++.|++|+.+++|+.+..   ..|+      ...+|.||+|+
T Consensus        62 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~  124 (125)
T d3grsa2          62 DSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI  124 (125)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred             hhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEe
Confidence            456788888888888999999999999999999876542   3332      35799999986

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.92  E-value=0.019  Score=46.57  Aligned_cols=53  Identities=19%  Similarity=0.152  Sum_probs=39.7

Q ss_pred             CcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC--CcEEecCEEEEec
Q 036521          132 RSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD--GFQGFYDGCIMAV  186 (602)
Q Consensus       132 G~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~--g~~~~ad~VI~A~  186 (602)
                      -..++.+.+.+.++++|.+++++++|++++  ++...+...+  ++++.||.||+|+
T Consensus        60 ~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~  114 (115)
T d1lvla2          60 YDSELTAPVAESLKKLGIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAV  114 (115)
T ss_dssp             SCHHHHHHHHHHHHHHTCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECC
T ss_pred             ccchhHHHHHHHHHhhcceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEec
Confidence            345677888888888899999999999985  3333333332  3478999999996

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.59  E-value=0.043  Score=47.81  Aligned_cols=52  Identities=15%  Similarity=0.220  Sum_probs=40.4

Q ss_pred             HHHHHccCCCCCeEEEEecCchHHH-HHHHhcc-CCEEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGTFA-IEVVRQT-GCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~~~-~~la~~~-g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+.+..++++|++||=+|||.++.. ..+++.. +.+|+++|.+++-++.|++.
T Consensus        19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            4557788999999999999985554 4445544 45899999999988888763

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.028  Score=42.07  Aligned_cols=51  Identities=12%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             HHHHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+.+...++++++||-.|.  |.|.+++.+++..|++|++++-|++..+++++
T Consensus        22 ~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2          22 ALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             HHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred             HHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence            3445556688999998875  47788889999899999999999999998876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.18  E-value=0.076  Score=46.20  Aligned_cols=53  Identities=15%  Similarity=0.188  Sum_probs=41.5

Q ss_pred             HHHHHHccCCCCCeEEEEecCch-HHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGCGWG-TFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGcG~G-~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      ..+.+.+++++|++||-+|||.- .++..+|+..|+ .|+.+|.+++-++.|++.
T Consensus        18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            34567788999999999999854 455666766676 567889999999988764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.05  E-value=0.069  Score=46.86  Aligned_cols=52  Identities=23%  Similarity=0.341  Sum_probs=44.0

Q ss_pred             HHHHHccCCCCCeEEEEecC--chHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCG--WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG--~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      .+.+..++++|++||-.|++  .|..++.+|+..|++|++++-|++.++.+++.
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~   73 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI   73 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh
Confidence            45567789999999998884  57788889998999999999999988887664

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.02  E-value=0.12  Score=48.94  Aligned_cols=44  Identities=20%  Similarity=0.103  Sum_probs=39.0

Q ss_pred             CCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHH
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      -.+||-||.|.|+.+..+.++. ..+|+.|||+++.++.|++...
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~  134 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK  134 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH
Confidence            3699999999999999999874 4689999999999999998654

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=92.92  E-value=0.034  Score=51.62  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=29.0

Q ss_pred             CCeEEEEecCchHHHHHHHhc-cCCEEEEEcCC
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQ-TGCNYTGITLS  582 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~-~g~~v~gid~S  582 (602)
                      ..+|||||||.|..++.++++ ++.+++..|+.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp  113 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP  113 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH
Confidence            368999999999999999998 68999999984

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.92  E-value=0.058  Score=46.90  Aligned_cols=52  Identities=17%  Similarity=0.286  Sum_probs=40.9

Q ss_pred             HHHHHccCCCCCeEEEEecC-chHHHHHHHhccCC-EEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCG-WGTFAIEVVRQTGC-NYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG-~G~~~~~la~~~g~-~v~gid~S~~~l~~a~~~  592 (602)
                      .+.+..+++||++||=+||| .|.+++.+|+..|+ .|+++|.+++-++.+++.
T Consensus        19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            34567889999999999998 34555667776674 799999999988888764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.44  E-value=0.095  Score=45.22  Aligned_cols=52  Identities=21%  Similarity=0.433  Sum_probs=42.0

Q ss_pred             HHHHHccCCCCCeEEEEec-C-chHHHHHHHhccC-CEEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGC-G-WGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGc-G-~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~  592 (602)
                      +.+++.++++|++||=+|| | .|.+++.+++..| ++|+++|.+++-++.+++.
T Consensus        18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            3467789999999999997 4 5566676777656 6999999999999988764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.25  E-value=0.072  Score=51.50  Aligned_cols=51  Identities=14%  Similarity=0.075  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCC---Cc---EEecCEEEEec
Q 036521          136 YVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGD---GF---QGFYDGCIMAV  186 (602)
Q Consensus       136 l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~---g~---~~~ad~VI~A~  186 (602)
                      +.+-|.......+..|++++.|++|+..+++|.|++.+   ++   ...||.||+|+
T Consensus       115 ~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~At  171 (335)
T d2gv8a1         115 IQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICN  171 (335)
T ss_dssp             HHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECC
T ss_pred             HHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcc
Confidence            33444433333367899999999999999999887542   22   35699999997

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.54  E-value=0.15  Score=41.56  Aligned_cols=57  Identities=14%  Similarity=0.140  Sum_probs=42.0

Q ss_pred             cCCcHhHHHHHHHHHhcCCCeEEeCCceeEEEecCC----eEEEEeC--C-Cc--EEecCEEEEec
Q 036521          130 RSRSHSYVNKVIALLESLGCQIKTGCEVCSVLQYDE----GRTEVRG--D-GF--QGFYDGCIMAV  186 (602)
Q Consensus       130 ~gG~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~----gv~v~~~--~-g~--~~~ad~VI~A~  186 (602)
                      ++--..+.+.+.+.+.++|.++++++.|++++..++    .+.++..  + ++  ...+|.|++|+
T Consensus        56 ~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~Ai  121 (122)
T d1h6va2          56 RGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAV  121 (122)
T ss_dssp             TTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCC
T ss_pred             ccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEe
Confidence            444566888999999999999999999999987543    2444432  2 22  34689999986

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.05  E-value=0.14  Score=44.41  Aligned_cols=52  Identities=17%  Similarity=0.259  Sum_probs=41.5

Q ss_pred             HHHHHccCCCCCeEEEEecCchH-HHHHHHhccC-CEEEEEcCCHHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIGCGWGT-FAIEVVRQTG-CNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiGcG~G~-~~~~la~~~g-~~v~gid~S~~~l~~a~~~  592 (602)
                      .+.+..++++|++||=+|||.++ .++.+++..| ++|+++|.+++-++.+++.
T Consensus        19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            45677889999999999997555 4455566555 6999999999999988765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.36  E-value=0.12  Score=44.94  Aligned_cols=51  Identities=22%  Similarity=0.192  Sum_probs=42.5

Q ss_pred             HHHHHccCCCCCeEEEEe--cCchHHHHHHHhccCCEEEEEcCCHHHHHHHHH
Q 036521          541 LQIEKARVSKGHGVLEIG--CGWGTFAIEVVRQTGCNYTGITLSAEQLKYAEM  591 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDiG--cG~G~~~~~la~~~g~~v~gid~S~~~l~~a~~  591 (602)
                      .+.+...+++|++||=.|  .|.|.+++.+|+..|++|++++-+++..+.+++
T Consensus        16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~   68 (183)
T d1pqwa_          16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   68 (183)
T ss_dssp             HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             HHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc
Confidence            445667899999999987  347888888998889999999999998888765

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.81  E-value=0.42  Score=44.63  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             CCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      +-.+||-||-|.|..+..+.+.. ..+|+.|||+++.++.|++...
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~  120 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP  120 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhCh
Confidence            44699999999999999999864 4699999999999999998754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.39  E-value=0.22  Score=47.30  Aligned_cols=54  Identities=20%  Similarity=0.059  Sum_probs=40.9

Q ss_pred             CcHhHHHHHHHHHhcCCCeEEeCCceeEEEecC--CeEEEEeCCCcEEecCEEEEec
Q 036521          132 RSHSYVNKVIALLESLGCQIKTGCEVCSVLQYD--EGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       132 G~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~--~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      .+..+.+..++.+. ...+|+++++|++++.++  +.|.|.+.+++++.+|.||+|+
T Consensus        86 e~~~Yl~~~a~~~~-L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~at  141 (298)
T d1w4xa1          86 EILRYINFVADKFD-LRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMAS  141 (298)
T ss_dssp             HHHHHHHHHHHHTT-GGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECC
T ss_pred             hHHHHHHHHHHHcC-CcccccCCcEEEEEEEecCCCceeeccccccccccceEEEee
Confidence            34456666666541 023699999999998643  4699999999889999999997

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.54  Score=44.11  Aligned_cols=45  Identities=20%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             CCCeEEEEecCchHHHHHHHhcc-CCEEEEEcCCHHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQT-GCNYTGITLSAEQLKYAEMKVN  594 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~-g~~v~gid~S~~~l~~a~~~~~  594 (602)
                      .-++||-||-|.|+.+..+.+.. ..+|+.|||+++.++.|++...
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~  123 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLP  123 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhch
Confidence            34699999999999999999863 5699999999999999998654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.95  E-value=0.2  Score=40.59  Aligned_cols=49  Identities=18%  Similarity=0.102  Sum_probs=38.6

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~  186 (602)
                      ...+.+.+.+.+.++|.++++++.|.++..  +++  . .+++.+.+|.||+|+
T Consensus        71 d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~v--~-~~~~~i~~D~vi~a~  119 (122)
T d1xhca2          71 DEELSNMIKDMLEETGVKFFLNSELLEANE--EGV--L-TNSGFIEGKVKICAI  119 (122)
T ss_dssp             CHHHHHHHHHHHHHTTEEEECSCCEEEECS--SEE--E-ETTEEEECSCEEEEC
T ss_pred             CHHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CEE--E-eCCCEEECCEEEEEE
Confidence            356777888888888999999999998854  343  2 356689999999996

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.91  E-value=0.42  Score=41.03  Aligned_cols=46  Identities=20%  Similarity=0.242  Sum_probs=36.6

Q ss_pred             cCCCCCeEEEEecCchHHH-HHHHhccC-CEEEEEcCCHHHHHHHHHH
Q 036521          547 RVSKGHGVLEIGCGWGTFA-IEVVRQTG-CNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       547 ~l~~g~~vLDiGcG~G~~~-~~la~~~g-~~v~gid~S~~~l~~a~~~  592 (602)
                      .++||+.||-+|||..++. +.+++..| .+|+++|.+++.++.+++.
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            4789999999999955544 66676655 5889999999999888764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.87  E-value=0.51  Score=44.41  Aligned_cols=43  Identities=21%  Similarity=0.160  Sum_probs=38.4

Q ss_pred             CCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHH
Q 036521          551 GHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       551 g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~  593 (602)
                      -++||-||-|.|+.+..+.+..+ .+|+.|||+++.++.|++-.
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f  124 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFF  124 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHC
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhc
Confidence            36999999999999999998744 58999999999999999864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.41  E-value=0.49  Score=44.89  Aligned_cols=44  Identities=23%  Similarity=0.201  Sum_probs=38.9

Q ss_pred             CCCeEEEEecCchHHHHHHHhccC-CEEEEEcCCHHHHHHHHHHH
Q 036521          550 KGHGVLEIGCGWGTFAIEVVRQTG-CNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       550 ~g~~vLDiGcG~G~~~~~la~~~g-~~v~gid~S~~~l~~a~~~~  593 (602)
                      .-++||-||-|.|+.+..+.+... .+|+.|||+++.++.|++-.
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~  150 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFL  150 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHC
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhc
Confidence            446999999999999999998644 58999999999999999865

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=87.48  E-value=0.39  Score=43.62  Aligned_cols=45  Identities=16%  Similarity=0.104  Sum_probs=33.5

Q ss_pred             HHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc-----cCCEEEEEcCCHHH
Q 036521          538 KHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ-----TGCNYTGITLSAEQ  585 (602)
Q Consensus       538 ~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~-----~g~~v~gid~S~~~  585 (602)
                      .+..++.++.  |. +|||||+++|+-++.+|.-     ..++|+|||+.+..
T Consensus        71 ~~~eli~~~K--Pk-~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~  120 (232)
T d2bm8a1          71 VYHDMLWELR--PR-TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR  120 (232)
T ss_dssp             HHHHHHHHHC--CS-EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT
T ss_pred             HHHHHHHHhC--CC-EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhh
Confidence            4455666654  54 8999999999988877642     35899999997644

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=87.39  E-value=0.48  Score=44.93  Aligned_cols=54  Identities=13%  Similarity=0.014  Sum_probs=42.0

Q ss_pred             cHhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe----EEEEeCCCc--EEecCEEEEec
Q 036521          133 SHSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG----RTEVRGDGF--QGFYDGCIMAV  186 (602)
Q Consensus       133 ~~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g----v~v~~~~g~--~~~ad~VI~A~  186 (602)
                      ...+.+.|.+.+.++|.+|+++++|+++..+++|    +.+...+++  .+.|+.||+||
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAt  210 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAA  210 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcC
Confidence            4467788888888889999999999999886553    445444443  47899999998

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.18  E-value=0.22  Score=44.56  Aligned_cols=43  Identities=28%  Similarity=0.330  Sum_probs=35.4

Q ss_pred             HHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecC
Q 036521          143 LLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVH  187 (602)
Q Consensus       143 ~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p  187 (602)
                      .++++|.+++++++|++|..+++.  |++++|+++.+|.||+|+-
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~~~--V~l~dG~~i~~d~lViAtG  134 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRDNM--VKLNDGSQITYEKCLIATG  134 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGGTE--EEETTSCEEEEEEEEECCC
T ss_pred             HHHHCCeEEEeCCEEEEeeccCce--eeeccceeeccceEEEeee
Confidence            445568899999999999876664  5667898999999999975

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=87.05  E-value=0.3  Score=42.74  Aligned_cols=58  Identities=14%  Similarity=0.206  Sum_probs=42.7

Q ss_pred             HHHHHccCCCCCeEEEE--ecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 036521          541 LQIEKARVSKGHGVLEI--GCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKVNEAGL  598 (602)
Q Consensus       541 ~l~~~l~l~~g~~vLDi--GcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~~~~gl  598 (602)
                      .+.+..++++|+.||=+  |.| .|..++.+|+..|++|+++.-+++..+...+.+++.|.
T Consensus        19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2          19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccc
Confidence            34456789999988888  323 56788889998999999997666666666666666554

>d1ikta_ d.106.1.1 (A:) SCP2-like domain of MFE-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SCP-like
superfamily: SCP-like
family: Sterol carrier protein, SCP
domain: SCP2-like domain of MFE-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.57  E-value=0.81  Score=36.40  Aligned_cols=58  Identities=12%  Similarity=0.207  Sum_probs=39.6

Q ss_pred             eEEEecCCcEEEecCCccCCCCcEEEEEeChHHHHHHhhcCCcchhhhhhcCceeecCChH
Q 036521          377 LILLEEVGTTFTFEGTRRYCNLRTVLRIHNPQFYWKVMTHADLGLADSYIDGDFSFADKEE  437 (602)
Q Consensus       377 l~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~  437 (602)
                      ..|.+.||......+.. ...|.++|++.+..+. ++ ..|.+..-.+||.|...++|+..
T Consensus        43 ~~i~l~~g~~~~~~~~~-~~~~d~tit~~~~~~~-~i-~~G~~~~~~a~~~Gklki~Gd~~  100 (115)
T d1ikta_          43 WTIDLKSGSGKVYQGPA-KGAADTTIILSDEDFM-EV-VLGKLDPQKAFFSGRLKARGNIM  100 (115)
T ss_dssp             EEEEESSTTCEEEESSC-SSCCSEEEEEEHHHHH-HH-HTTSSCHHHHHHTTSSEEEESHH
T ss_pred             EEEEEECCceEEeccCC-CCCCCEEEEEeHHHHH-HH-HCCCCCHHHHHHCCCEEEECCHH
Confidence            45555566544332222 1257899998875554 44 56999999999999999999643

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.06  E-value=0.6  Score=43.79  Aligned_cols=54  Identities=15%  Similarity=-0.039  Sum_probs=40.8

Q ss_pred             HhHHHHHHHHHhcCCCeEEeCCceeEEEecCCe----EEEEeCCCc--EEecCEEEEecC
Q 036521          134 HSYVNKVIALLESLGCQIKTGCEVCSVLQYDEG----RTEVRGDGF--QGFYDGCIMAVH  187 (602)
Q Consensus       134 ~~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g----v~v~~~~g~--~~~ad~VI~A~p  187 (602)
                      ..+...+.+.+.+.|.+|+++++|+++..+++|    |.+...++.  .+.|+.||+||=
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtG  204 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATG  204 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccC
Confidence            356778887777789999999999999887654    344444443  468999999984

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.81  E-value=1.7  Score=42.60  Aligned_cols=54  Identities=11%  Similarity=-0.004  Sum_probs=45.4

Q ss_pred             ccCCCCCeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 036521          546 ARVSKGHGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMKVNEAGLQ  599 (602)
Q Consensus       546 l~l~~g~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~~~~~gl~  599 (602)
                      ..+++++.++|||+-.|..+..+++.   .+.+|++++.++...+..+++++..++.
T Consensus       208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            34678889999999999988877764   2369999999999999999999877654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=85.61  E-value=0.69  Score=39.47  Aligned_cols=42  Identities=26%  Similarity=0.324  Sum_probs=36.2

Q ss_pred             CeEEEEecC-chHHHHHHHhccCCEEEEEcCCHHHHHHHHHHH
Q 036521          552 HGVLEIGCG-WGTFAIEVVRQTGCNYTGITLSAEQLKYAEMKV  593 (602)
Q Consensus       552 ~~vLDiGcG-~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~~  593 (602)
                      .+|+-||+| .|..++..|...|++|+.+|.+++-+++.+...
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~   75 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLF   75 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhh
Confidence            499999999 577778888889999999999999998877654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.58  E-value=0.24  Score=43.08  Aligned_cols=53  Identities=21%  Similarity=0.258  Sum_probs=44.2

Q ss_pred             HHHHHHccCCCCCeEEEEec--CchHHHHHHHhccCCEEEEEcCCHHHHHHHHHH
Q 036521          540 SLQIEKARVSKGHGVLEIGC--GWGTFAIEVVRQTGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       540 ~~l~~~l~l~~g~~vLDiGc--G~G~~~~~la~~~g~~v~gid~S~~~l~~a~~~  592 (602)
                      +.+.+...+++|++||--|.  |.|.+++.+|+..|++|+++.-|++-.+.+++.
T Consensus        21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l   75 (176)
T d1xa0a2          21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL   75 (176)
T ss_dssp             HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT
T ss_pred             HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc
Confidence            44566677888999999995  578889999998999999999999888888754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.39  E-value=0.71  Score=43.68  Aligned_cols=53  Identities=8%  Similarity=0.015  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHhcCCCeEEeCCceeEEEecCCe----EEEEeCCCc--EEecCEEEEecC
Q 036521          135 SYVNKVIALLESLGCQIKTGCEVCSVLQYDEG----RTEVRGDGF--QGFYDGCIMAVH  187 (602)
Q Consensus       135 ~l~~~la~~l~~~g~~v~l~t~V~~i~~~~~g----v~v~~~~g~--~~~ad~VI~A~p  187 (602)
                      .+++.|.+.+.+.|.+|+++++|+++..++++    +.+...+++  .+.++.||+||=
T Consensus       149 ~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtG  207 (317)
T d1qo8a2         149 EIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATG  207 (317)
T ss_dssp             HHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCC
T ss_pred             hhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecc
Confidence            57888888888889999999999999776553    344455554  468999999983

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=84.23  E-value=0.14  Score=47.17  Aligned_cols=84  Identities=12%  Similarity=0.036  Sum_probs=51.8

Q ss_pred             CCCCcccccccCCCCccHHHHHHHHHHHHHHHccCCCCCeEEEEecCchHHHHHHHhc----------------------
Q 036521          514 DESMTYSCPIFKDEDEDLKVAQMRKHSLQIEKARVSKGHGVLEIGCGWGTFAIEVVRQ----------------------  571 (602)
Q Consensus       514 ~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~l~~g~~vLDiGcG~G~~~~~la~~----------------------  571 (602)
                      ....-++.+++..-...|.++   .+..++...+-+.+..++|--||+|.+.+.+|-.                      
T Consensus        17 sg~~L~~~~~~~~~~~~Laa~---il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~   93 (249)
T d1o9ga_          17 CGVVLHSAPGYPAFPVRLATE---IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAA   93 (249)
T ss_dssp             TTTSSCCBTTBCCCCHHHHHH---HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHH
T ss_pred             CCCccccCCCCCCcchHHHHH---HHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCH
Confidence            333344445555444444322   2223333333344567999999999999987752                      


Q ss_pred             -------------------cCCEEEEEcCCHHHHHHH---HHHHHHcCCCC
Q 036521          572 -------------------TGCNYTGITLSAEQLKYA---EMKVNEAGLQV  600 (602)
Q Consensus       572 -------------------~g~~v~gid~S~~~l~~a---~~~~~~~gl~~  600 (602)
                                         ...++.|.|+++++++.|   +++++.+|+++
T Consensus        94 ~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~  144 (249)
T d1o9ga_          94 KNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGAL  144 (249)
T ss_dssp             HHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCc
Confidence                               012456888888888888   46888888864

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.84  E-value=0.12  Score=49.51  Aligned_cols=108  Identities=7%  Similarity=0.036  Sum_probs=70.2

Q ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHhhhcCCChhhHHhhhHHHH-HHHHHhcCccccCCCCcEEEecCCcHhHHHHHH
Q 036521           63 RDETLGQFIKSRGYSELFQKAYLVPICGSIWSCPSEGIMSFSAFSI-LSFYRNHHLLQLFGRPQWLTVRSRSHSYVNKVI  141 (602)
Q Consensus        63 ~~~s~~~~l~~~~~~~~~~~~~~~pl~~~v~~~~~~~~~~~p~~~~-l~~~~~~g~~~~~~~~~~~~~~gG~~~l~~~la  141 (602)
                      +..++.+|+.+. +++.+.+.++.|....+|++++.++....+..+ +.+-.....   .......-..+|..++++.|.
T Consensus       130 ~~~n~ee~~~~~-~G~~lye~f~~pYt~K~Wg~~~~~L~~~~~~r~p~r~~~d~~y---f~d~~q~~Pk~Gyt~~~e~mL  205 (314)
T d2bi7a1         130 DPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNY---FNHKFQGMPKCGYTQMIKSIL  205 (314)
T ss_dssp             SCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCS---CCCSEEEEETTHHHHHHHHHH
T ss_pred             CchhhhHHHHHh-chhhhHHhhcCcchhhhhccCCcccchhhhhccceeccccccc---cchhhheeecccHHHHHHHHH
Confidence            557899999884 899999999999999999999987622211000 000000000   111122334788888888886


Q ss_pred             HHHhcCCCeEEeCCceeEEEecCCeEEEEeCCCcEEecCEEEEecChHHH
Q 036521          142 ALLESLGCQIKTGCEVCSVLQYDEGRTEVRGDGFQGFYDGCIMAVHAPDA  191 (602)
Q Consensus       142 ~~l~~~g~~v~l~t~V~~i~~~~~gv~v~~~~g~~~~ad~VI~A~p~~~a  191 (602)
                      +.-   +.+|.+++.+.              .++...+|+||.+.|.+..
T Consensus       206 ~~~---~i~v~ln~~~~--------------~~~~~~~d~vI~TgpiD~~  238 (314)
T d2bi7a1         206 NHE---NIKVDLQREFI--------------VEERTHYDHVFYSGPLDAF  238 (314)
T ss_dssp             CST---TEEEEESCCCC--------------GGGGGGSSEEEECSCHHHH
T ss_pred             hCC---CCeeecccccc--------------ccccccceeEEEeccHHHH
Confidence            543   66888887742              1334568999999998765

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.74  E-value=1.3  Score=35.84  Aligned_cols=39  Identities=15%  Similarity=0.228  Sum_probs=29.3

Q ss_pred             CeEEEEecCchHHHHHHHhc---cCCEEEEEcCCHHHHHHHHHH
Q 036521          552 HGVLEIGCGWGTFAIEVVRQ---TGCNYTGITLSAEQLKYAEMK  592 (602)
Q Consensus       552 ~~vLDiGcG~G~~~~~la~~---~g~~v~gid~S~~~l~~a~~~  592 (602)
                      ++|+=+||  |.++..+++.   .|.+|+.||.+++.++.++++
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~   42 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE   42 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh
Confidence            45666665  6666666654   589999999999999887654