Citrus Sinensis ID: 036607

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
MELAGLRLIFLFSFATLMPCLSAHIAEVNEVWRRRAEEAMQTTEQYYDPNPVAVANHLNMKVQDLSKQAIAKRGLLNAESGQCAATNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNCSPEEGKSWIWRSEGDVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGALVCKPGQEC
ccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccccccccccccEEEEccccccccccccccccHHHHcccccEEEEEEEcEEEEEEcEEEEccccEEEccccEEEEEccccEEEEcccEEEEEccEEEccccccccEEEcccccccccccccccEEEEEccccEEEEcccccccccccEEEEEccEEEEEEccEEcccccccccccccccccccccEEEEEcccccccccccccccccEEEEEEccEEEcccEEEEEcccccEEEEEcEEEEccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEEcccEEEEEccccccccEEEEEccccccccccccEEEEEEccccEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEcccccccccccccccccccccHHHHHHHHHccccccccccccc
MELAGLRLIFLFSFATLMPCLSAHIAEVNEVWRRRAEEAMQTteqyydpnpvavANHLNMKVQDLSKQAIAKRGllnaesgqcaatnpidkcwrckenWAEDRQALAGCalgfgskatggkggkiyevtdpsdndmenpkvgtLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGsktidgrgakVHIANGAGIMLQFVKNVIIHGihihnispcsggmirdsvdhvgkrgqsdgdavsifgssniwldHLTLSQAHDGLIDAIQASTAItisnchlsnhdkaillgasdtftedKKMQVTVAFNRFDkglvqrmpcvrfgFAHVVNNDYNQWEMYAigglqgptilsqgnrffasnnqnAKEVTkrmncspeegkswiwrsegdvllngayfnssgdpkkqIQYQMddvikpesgteVERITKFAGAlvckpgqec
MELAGLRLIFLFSFATLMPCLSAHIAEVNEVWRRRAEEAMQTTEQYYDPNPVAVANHLNMKVQDLSKQAIAKRGLLnaesgqcaatnpidKCWRCKENWAEDRQALAGCALGfgskatggkggkiyevtdpsdndmenpKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQnakevtkrmncspeegkSWIWRSEGDVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAgalvckpgqec
MELAGLRLIFLFSFATLMPCLSAHIAEVNEVWRRRAEEAMQTTEQYYDPNPVAVANHLNMKVQDLSKQAIAKRGLLNAESGQCAATNPIDKCWRCKENWAEDRQALAGCALgfgskatggkggkIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNViihgihihniSPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNCSPEEGKSWIWRSEGDVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGALVCKPGQEC
***AGLRLIFLFSFATLMPCLSAHIAEVNEVWRRRAEEAMQTTEQYYDPNPVAVANHLNMKVQDLSKQAIAKRGLLNAESGQCAATNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIY**************VGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVG******GDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFA********************KSWIWRSEGDVLLNGAYFN*************************ERITKFAGALVC******
****GLR*IFLFSFATLMPCLSAHIAEVNEVWRR*A**********YDPNPVAVANHLNM**********************CAATNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNCSPEEGKSWIWRSEGDVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGALVCKPGQEC
MELAGLRLIFLFSFATLMPCLSAHIAEVNEVWRRRAEEAMQTTEQYYDPNPVAVANHLNMKVQDLSKQAIAKRGLLNAESGQCAATNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNA************EGKSWIWRSEGDVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGALVCKPGQEC
*ELAGLRLIFLFSFATLMPCLSAHIAEVNEVWRRRAEEAMQTTEQYYDPNPVAVANHLNMKVQDLSKQAIAKRGL**AESGQCAATNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNCSPEEGKSWIWRSEGDVLLNGAYFNSSG****************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELAGLRLIFLFSFATLMPCLSAHIAEVNEVWRRRAEEAMQTTEQYYDPNPVAVANHLNMKVQDLSKQAIAKRGLLNAESGQCAATNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNCSPEEGKSWIWRSEGDVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGALVCKPGQEC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query436 2.2.26 [Sep-21-2011]
Q9SRH4475 Probable pectate lyase 7 no no 1.0 0.917 0.509 1e-139
P15722449 Probable pectate lyase P5 N/A no 0.986 0.957 0.530 1e-137
Q9LFP5472 Probable pectate lyase 19 yes no 1.0 0.923 0.519 1e-134
P40973434 Pectate lyase OS=Lilium l N/A no 0.995 1.0 0.552 1e-131
O64510455 Probable pectate lyase 6 no no 0.972 0.931 0.515 1e-130
Q9M9S2459 Probable pectate lyase 3 no no 0.995 0.945 0.510 1e-130
Q944R1470 Probable pectate lyase 15 no no 0.873 0.810 0.542 1e-119
P40972397 Pectate lyase OS=Nicotian N/A no 0.841 0.924 0.564 1e-118
Q9M8Z8416 Probable pectate lyase 8 no no 0.938 0.983 0.493 1e-116
Q940Q1431 Probable pectate lyase 1 no no 0.889 0.900 0.530 1e-116
>sp|Q9SRH4|PLY7_ARATH Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1 Back     alignment and function desciption
 Score =  494 bits (1271), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/475 (50%), Positives = 319/475 (67%), Gaps = 39/475 (8%)

Query: 1   MELAGL-RLIFLFSFATLMPCLSAHIA-EVNEVWRRRAEEAMQTTEQYYDPNPVAVANHL 58
           ME A L +L+ +   A+L+P + A++A E +E W  +A EA + T   Y P+P  + +H 
Sbjct: 1   METARLFKLVCVICIASLIPTIRANVADETDEYWVNKANEARKHTLMAYHPDPYEIVDHF 60

Query: 59  NMKVQDLS--------KQAIA-----------------KRGLLNAE-----------SGQ 82
           + +  D S        ++A+A                 +R L               +G 
Sbjct: 61  HERHYDNSTDVEGTEEEKAVASEEEDVIEMISSPTNSTRRSLTGRGKGKGKGKWSKLTGP 120

Query: 83  CAATNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVG 142
           C A+NPIDKCWRC+ +WA  R+ L  C  GFG + TGGK G+IY VT P D+DM NP+ G
Sbjct: 121 CTASNPIDKCWRCQPDWARRRKKLVHCVRGFGYRTTGGKRGRIYVVTSPRDDDMVNPRPG 180

Query: 143 TLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVI 202
           TLRHAVIQKEPLWI+F  DM+I+L QEL++   KTID RGA VHIA GAGI +Q+V N+I
Sbjct: 181 TLRHAVIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQYVHNII 240

Query: 203 IHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDA 262
           IHG+H+H+I   SGG+IRDS++H G RG++DGD +SIFG++NIWLDH+++S+  DGLIDA
Sbjct: 241 IHGLHVHHIVKSSGGLIRDSINHFGHRGEADGDGISIFGATNIWLDHISMSKCQDGLIDA 300

Query: 263 IQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFA 322
           I  STAITISN H ++H+  +LLGA +   +DKKMQVTVA+N F KGLVQRMP VR+GF 
Sbjct: 301 IMGSTAITISNSHFTHHNDVMLLGAQNNNMDDKKMQVTVAYNHFGKGLVQRMPRVRWGFV 360

Query: 323 HVVNNDYNQWEMYAIGGLQGPTILSQGNRFFA-SNNQNAKEVTKRMNCSPEEGKSWIWRS 381
           HVVNNDY  WE+YAIGG QGPTILS GNRF A  + Q+ +EVTKR   S  E K+W WRS
Sbjct: 361 HVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESEWKNWNWRS 420

Query: 382 EGDVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGALVCKPGQEC 436
           E DV +N AYF  SG+P  +  +    +IKP++G  V ++TK+AGAL C+ G+ C
Sbjct: 421 EKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCRVGKAC 475

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|P15722|PLY59_SOLLC Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFP5|PLY19_ARATH Probable pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1 Back     alignment and function description
>sp|P40973|PLY_LILLO Pectate lyase OS=Lilium longiflorum PE=2 SV=1 Back     alignment and function description
>sp|O64510|PLY6_ARATH Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9S2|PLY3_ARATH Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|P40972|PLY_TOBAC Pectate lyase OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
296082858468 unnamed protein product [Vitis vinifera] 0.965 0.899 0.610 1e-152
359488970439 PREDICTED: pectate lyase-like [Vitis vin 0.965 0.958 0.610 1e-152
449516840439 PREDICTED: pectate lyase-like [Cucumis s 0.990 0.984 0.573 1e-146
224124024435 predicted protein [Populus trichocarpa] 0.979 0.981 0.582 1e-144
449469661434 PREDICTED: LOW QUALITY PROTEIN: probable 0.979 0.983 0.564 1e-142
224099737429 predicted protein [Populus trichocarpa] 0.979 0.995 0.564 1e-142
225424912443 PREDICTED: probable pectate lyase P59 [V 0.967 0.952 0.563 1e-141
449459456431 PREDICTED: probable pectate lyase 7-like 0.979 0.990 0.555 1e-140
255558212440 Pectate lyase precursor, putative [Ricin 0.997 0.988 0.554 1e-140
240256294472 putative pectate lyase 19 [Arabidopsis t 1.0 0.923 0.516 1e-140
>gi|296082858|emb|CBI22159.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/421 (61%), Positives = 311/421 (73%)

Query: 16  TLMPCLSAHIAEVNEVWRRRAEEAMQTTEQYYDPNPVAVANHLNMKVQDLSKQAIAKRGL 75
            L P + AHI E +EVW++RAEEA +   + Y PNP  V N  N  V+   +     R  
Sbjct: 48  VLAPSIRAHIGEFDEVWQKRAEEAQKAALEAYQPNPEEVTNQFNKNVRKSMQGTNTTRRN 107

Query: 76  LNAESGQCAATNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDND 135
           L + +G C ATNPID+CWRCK++WA++R+ LA C LGFG + TGGK G+ Y VTD SDND
Sbjct: 108 LRSNNGPCMATNPIDRCWRCKQDWAKNRKKLADCVLGFGRRTTGGKDGEFYVVTDASDND 167

Query: 136 MENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIML 195
           M +PK GTLRHAVIQKEPLWIIFA+DM I+L+QELI+ G+KTIDGRGA VHIA G GI +
Sbjct: 168 MIDPKPGTLRHAVIQKEPLWIIFARDMIIRLKQELIMAGNKTIDGRGANVHIAYGCGITI 227

Query: 196 QFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQA 255
           QFVKN+IIH +HIH+I P  GGMIRDSVDH G R  SDGD VSIFGSSN+W+DHL++S  
Sbjct: 228 QFVKNIIIHNLHIHDIVPAQGGMIRDSVDHYGLRTASDGDGVSIFGSSNVWVDHLSMSNC 287

Query: 256 HDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMP 315
            DGL+D I ASTAITISNCH +NH++ +L G S+ F  DK MQVTVAFN + +GLVQRMP
Sbjct: 288 KDGLVDVIMASTAITISNCHFTNHNEVMLFGGSNNFQGDKIMQVTVAFNHYGRGLVQRMP 347

Query: 316 CVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNCSPEEGK 375
             R+GF HVVNNDY  W MYAIGG Q PTI+SQGNRF A  N   KEVTKR   SP+E K
Sbjct: 348 RCRYGFVHVVNNDYTHWLMYAIGGSQNPTIISQGNRFIAPPNMACKEVTKRDYASPDEWK 407

Query: 376 SWIWRSEGDVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGALVCKPGQE 435
           SW W S+GD+L NGA+F  SGDPKK+  +   D+IK + GT V R+T+F+G+L CK  Q 
Sbjct: 408 SWTWISQGDLLQNGAFFVQSGDPKKKHPFTRYDMIKAKPGTFVNRLTRFSGSLGCKVNQP 467

Query: 436 C 436
           C
Sbjct: 468 C 468

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488970|ref|XP_002282500.2| PREDICTED: pectate lyase-like [Vitis vinifera] gi|147866287|emb|CAN79927.1| hypothetical protein VITISV_042447 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449516840|ref|XP_004165454.1| PREDICTED: pectate lyase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224124024|ref|XP_002330086.1| predicted protein [Populus trichocarpa] gi|222871220|gb|EEF08351.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449469661|ref|XP_004152537.1| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase P59-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224099737|ref|XP_002311599.1| predicted protein [Populus trichocarpa] gi|222851419|gb|EEE88966.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225424912|ref|XP_002270089.1| PREDICTED: probable pectate lyase P59 [Vitis vinifera] gi|296086426|emb|CBI32015.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459456|ref|XP_004147462.1| PREDICTED: probable pectate lyase 7-like [Cucumis sativus] gi|449509225|ref|XP_004163529.1| PREDICTED: probable pectate lyase 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255558212|ref|XP_002520133.1| Pectate lyase precursor, putative [Ricinus communis] gi|223540625|gb|EEF42188.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|240256294|ref|NP_197015.4| putative pectate lyase 19 [Arabidopsis thaliana] gi|332004735|gb|AED92118.1| putative pectate lyase 19 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
TAIR|locus:2100247475 AT3G01270 [Arabidopsis thalian 0.878 0.806 0.529 1.2e-117
TAIR|locus:2012562459 AT59 [Arabidopsis thaliana (ta 0.995 0.945 0.482 4.9e-108
TAIR|locus:2058842455 AT2G02720 [Arabidopsis thalian 0.977 0.936 0.477 1.9e-106
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.878 0.814 0.509 1e-98
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.853 0.911 0.525 9.4e-98
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.889 0.900 0.497 2e-97
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.866 0.917 0.496 8.4e-97
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.811 0.819 0.515 3.7e-96
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.901 0.944 0.476 7.6e-96
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.889 0.930 0.487 4.2e-95
TAIR|locus:2100247 AT3G01270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1080 (385.2 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
 Identities = 204/385 (52%), Positives = 264/385 (68%)

Query:    54 VANHLNMKVQDLSKQAIAK-RGLLNAESGQCAATNPIDKCWRCKENWAEDRQALAGCALX 112
             +++  N   + L+ +   K +G  +  +G C A+NPIDKCWRC+ +WA  R+ L  C   
Sbjct:    91 ISSPTNSTRRSLTGRGKGKGKGKWSKLTGPCTASNPIDKCWRCQPDWARRRKKLVHCVRG 150

Query:   113 XXXXXXXXXXXXIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELIV 172
                         IY VT P D+DM NP+ GTLRHAVIQKEPLWI+F  DM+I+L QEL++
Sbjct:   151 FGYRTTGGKRGRIYVVTSPRDDDMVNPRPGTLRHAVIQKEPLWIVFKHDMSIRLSQELMI 210

Query:   173 QGSKTIDGRGAKVHIANGAGIMLQFVKNVXXXXXXXXXXSPCSGGMIRDSVDHVGKRGQS 232
                KTID RGA VHIA GAGI +Q+V N+             SGG+IRDS++H G RG++
Sbjct:   211 TSDKTIDARGANVHIAYGAGITMQYVHNIIIHGLHVHHIVKSSGGLIRDSINHFGHRGEA 270

Query:   233 DGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFT 292
             DGD +SIFG++NIWLDH+++S+  DGLIDAI  STAITISN H ++H+  +LLGA +   
Sbjct:   271 DGDGISIFGATNIWLDHISMSKCQDGLIDAIMGSTAITISNSHFTHHNDVMLLGAQNNNM 330

Query:   293 EDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQGNRF 352
             +DKKMQVTVA+N F KGLVQRMP VR+GF HVVNNDY  WE+YAIGG QGPTILS GNRF
Sbjct:   331 DDKKMQVTVAYNHFGKGLVQRMPRVRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRF 390

Query:   353 FAS-NNQNAKEVTKRMNCSPEEGKSWIWRSEGDVLLNGAYFNSSGDPKKQIQYQMDDVIK 411
              A  + Q+ +EVTKR   S  E K+W WRSE DV +N AYF  SG+P  +  +    +IK
Sbjct:   391 IAPPHKQHYREVTKRDYASESEWKNWNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIK 450

Query:   412 PESGTEVERITKFAGALVCKPGQEC 436
             P++G  V ++TK+AGAL C+ G+ C
Sbjct:   451 PKNGMAVSKLTKYAGALDCRVGKAC 475
GO:0005886 "plasma membrane" evidence=ISM
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=IEA;ISS
TAIR|locus:2012562 AT59 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058842 AT2G02720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40972PLY_TOBAC4, ., 2, ., 2, ., 20.56480.84170.9244N/Ano
P40973PLY_LILLO4, ., 2, ., 2, ., 20.55270.99541.0N/Ano
P15721PLY56_SOLLC4, ., 2, ., 2, ., 20.55040.83710.9170N/Ano
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.55730.85320.9276N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.52380.86460.9331N/Ano
Q9LFP5PLY19_ARATH4, ., 2, ., 2, ., 20.51901.00.9237yesno
P27761MPA13_AMBARNo assigned EC number0.50560.80960.8891N/Ano
P27762MPAA2_AMBARNo assigned EC number0.51690.80960.8891N/Ano
P27760MPA12_AMBARNo assigned EC number0.51970.80960.8869N/Ano
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.53030.98620.9576N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.963
4th Layer4.2.2.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
smart00656190 smart00656, Amb_all, Amb_all domain 9e-77
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 1e-69
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 8e-34
pfam0443154 pfam04431, Pec_lyase_N, Pectate lyase, N terminus 6e-11
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  236 bits (605), Expect = 9e-77
 Identities = 97/207 (46%), Positives = 122/207 (58%), Gaps = 28/207 (13%)

Query: 161 DMNIKLQQ--ELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGM 218
           D+ I L     +I+  +KTIDGRG+KV I  G G+ ++ V NVII  + IH+  P  G  
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVYG-- 57

Query: 219 IRDSVDHVGKRGQSDGDAVSIFGSSNIWLDHLTLS---------QAHDGLIDAIQASTAI 269
                        SDGDA+SI GSSN+W+DH++LS           +DGLID    ST +
Sbjct: 58  -------------SDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 270 TISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDY 329
           TISN +  NH K +LLG SD+ T+D KM+VT+A N F   L QR P VRFG+ HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN-LRQRAPRVRFGYVHVYNNYY 163

Query: 330 NQWEMYAIGGLQGPTILSQGNRFFASN 356
             W  YAIGG  G TILS+GN F A  
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|190986 pfam04431, Pec_lyase_N, Pectate lyase, N terminus Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 436
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 99.74
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.9
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.34
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.08
PLN02218431 polygalacturonase ADPG 98.05
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.9
PLN03003456 Probable polygalacturonase At3g15720 97.89
PLN02155394 polygalacturonase 97.88
PLN02793443 Probable polygalacturonase 97.84
PLN03010409 polygalacturonase 97.8
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.74
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.68
PLN02218431 polygalacturonase ADPG 97.55
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.53
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.51
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.46
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.34
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.24
PLN02155394 polygalacturonase 97.18
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.09
PLN03003456 Probable polygalacturonase At3g15720 97.03
PLN03010409 polygalacturonase 97.03
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.98
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.95
PLN02793443 Probable polygalacturonase 96.78
PLN02480343 Probable pectinesterase 96.73
PLN02197588 pectinesterase 96.57
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.57
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.3
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 96.01
PLN02176340 putative pectinesterase 95.65
smart00656190 Amb_all Amb_all domain. 95.56
PLN02682369 pectinesterase family protein 95.13
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.07
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.88
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.85
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.65
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.58
PLN02304379 probable pectinesterase 94.28
PLN02432293 putative pectinesterase 94.14
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.05
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.0
PLN02665366 pectinesterase family protein 93.89
PLN02301548 pectinesterase/pectinesterase inhibitor 93.87
PLN02634359 probable pectinesterase 93.78
PLN02773317 pectinesterase 93.57
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 93.55
PLN02217670 probable pectinesterase/pectinesterase inhibitor 93.41
PLN02916502 pectinesterase family protein 93.41
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 93.37
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.32
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.25
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.15
PLN02201520 probable pectinesterase/pectinesterase inhibitor 92.87
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 92.28
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.21
PLN02314586 pectinesterase 92.02
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 91.98
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.57
PLN02497331 probable pectinesterase 91.0
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 90.69
PLN02671359 pectinesterase 90.28
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 89.95
PRK10531422 acyl-CoA thioesterase; Provisional 87.96
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 87.89
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 87.67
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 85.68
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 83.88
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 83.1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-56  Score=436.62  Aligned_cols=272  Identities=31%  Similarity=0.423  Sum_probs=218.1

Q ss_pred             CCCcCCCCCeEEEEcCCCCCCCCCCCCccHHHHHhcCCCeEEEEeeceEEEeC------ceEEeeCCceEEeeCCccEEe
Q 036607          115 SKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQ------QELIVQGSKTIDGRGAKVHIA  188 (436)
Q Consensus       115 ~~ttGG~gG~vy~VT~~~d~~~~~p~pGtLR~av~~~~P~~IvF~~sg~I~L~------~~L~V~SnkTI~G~ga~v~I~  188 (436)
                      .+||||.||++++|++.+|          |...++..+|.++|.-+.|+|++.      .+|.+.|||||.|.|++++|.
T Consensus        46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~  115 (345)
T COG3866          46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV  115 (345)
T ss_pred             CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence            3799999999999999988          678899999996556666999987      467788999999999999999


Q ss_pred             cCccEEEeccccEEEECeEEeeccCCCCCceecCCCCcCCCCCCCCCeeEe-eCCceEEEeeeeecc--------ccCCc
Q 036607          189 NGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSI-FGSSNIWLDHLTLSQ--------AHDGL  259 (436)
Q Consensus       189 ~G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~~~~g~~~~~dgDaIsI-~gs~nVWIDHcSfS~--------~~DGl  259 (436)
                       |.||.|+.+.|||||||+|++...+                ....|+|+| .+++|||||||+|+.        ..||+
T Consensus       116 -g~gl~i~~a~NVIirNltf~~~~~~----------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl  178 (345)
T COG3866         116 -GGGLKIRDAGNVIIRNLTFEGFYQG----------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL  178 (345)
T ss_pred             -eceEEEEeCCcEEEEeeEEEeeccC----------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence             9999999999999999999976321                112699999 689999999999998        78999


Q ss_pred             eeeecCCccEEEeCceecCCCceeEecCCCCc-cCCCceeEEEEeeEEcCCCCCcCccccceeEEEEcceEecCcceeee
Q 036607          260 IDAIQASTAITISNCHLSNHDKAILLGASDTF-TEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIG  338 (436)
Q Consensus       260 iDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~-~~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~HvvNN~y~~w~~Yaig  338 (436)
                      +|+++++++||||||+|++|+|.||+|.+|+. .+|++.+||+|||+|. |+.||+||+|||.+||+||||.....|++.
T Consensus       179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFk-n~~qR~PriRfG~vHvyNNYy~~~~~~g~a  257 (345)
T COG3866         179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFK-NLYQRGPRIRFGMVHVYNNYYEGNPKFGVA  257 (345)
T ss_pred             EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccc-cccccCCceEeeEEEEeccccccCcccceE
Confidence            99999999999999999999999999999984 4578999999999996 899999999999999999999976655555


Q ss_pred             cCCC--ceEEEeccEEecCCCCCccceeeeccCCCCCCccceEecCCceeeecceeecCCCCCCC---cC--CCCCCccc
Q 036607          339 GLQG--PTILSQGNRFFASNNQNAKEVTKRMNCSPEEGKSWIWRSEGDVLLNGAYFNSSGDPKKQ---IQ--YQMDDVIK  411 (436)
Q Consensus       339 ~s~~--~~I~~egNyF~a~~~~~~k~vt~r~~~~~~~~~~~~w~s~gD~~~nGa~f~~sg~~~~~---~~--y~~~~~~~  411 (436)
                      ..++  ++|++|+|||+....+..---|++.        .++|..     -.|++|..++....+   +.  ++...+++
T Consensus       258 ~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--------~GY~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Yt  324 (345)
T COG3866         258 ITIGTSAKIYVENNYFENGSEGLGFLDTKGT--------SGYANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYT  324 (345)
T ss_pred             EeeccceEEEEecceeccCCCCceeeecCCc--------cceEEe-----ccCceecccCCcccccCCccCCCCCCcccc
Confidence            5555  9999999999997544221111111        133332     235555555543222   22  33344568


Q ss_pred             cCChhhHH-HHhccccc
Q 036607          412 PESGTEVE-RITKFAGA  427 (436)
Q Consensus       412 ~~p~~~v~-~lt~~AG~  427 (436)
                      +.|...|. .+|++||+
T Consensus       325 vd~~~dVks~Vt~yAGa  341 (345)
T COG3866         325 VDPPEDVKSFVTNYAGA  341 (345)
T ss_pred             cCChHHhhhhhhccccc
Confidence            89999995 77899994

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 2e-78
3zsc_A340 Catalytic Function And Substrate Recognition Of The 2e-16
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 6e-16
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 7e-15
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 2e-14
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 2e-14
3krg_A399 Structural Insights Into Substrate Specificity And 3e-14
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 5e-14
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 9e-14
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 1e-13
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 1e-09
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 1e-09
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 2e-08
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 2e-08
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 4e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  289 bits (740), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 152/348 (43%), Positives = 203/348 (58%), Gaps = 8/348 (2%)
Query: 87  NPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDPSDNDMENPKVGTLRH 146
           NPID CWR   NW ++R  LA CA+              Y VT   DN + NP  GTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPV-NPTPGTLRY 60
Query: 147 AVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVXXXXX 206
              +++ LWIIF+++MNIKL+  L V G KTIDGRGA VH+ NG   +  F++ V     
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCL--FMRKVSHVIL 118
Query: 207 XXXXXSPCSGGMIRDSV--DHVGKR--GQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDA 262
                  C+  ++ D +  + +G       DGDA+++   +N W+DH +LS   DGLID 
Sbjct: 119 HSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDV 178
Query: 263 IQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFA 322
              ST ITISN H  NH K +LLG  DT+ +DK M+VTVAFN+F     QRMP  R+G  
Sbjct: 179 TLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLV 238
Query: 323 HVVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNC-SPEEGKSWIWRS 381
           HV NN+Y+ W +YAIGG   PTILS+GN F A +    KEVTKR+ C SP    +W+WRS
Sbjct: 239 HVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRS 298
Query: 382 EGDVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGALV 429
             D  +NGAYF SSG  ++   Y  ++  K E+G    ++TK AG + 
Sbjct: 299 TRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVVT 346
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-137
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 4e-93
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 1e-80
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 5e-80
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 2e-78
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 9e-70
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 3e-69
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 7e-68
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 2e-66
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 4e-65
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 2e-56
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 3e-06
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 5e-06
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 7e-06
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 8e-06
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-05
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 2e-04
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 2e-04
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 7e-04
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 9e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  397 bits (1020), Expect = e-137
 Identities = 162/345 (46%), Positives = 212/345 (61%), Gaps = 4/345 (1%)

Query: 87  NPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVGTLRH 146
           NPID CWR   NW ++R  LA CA+GFGS   GGKGG  Y VT   D +  NP  GTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 147 AVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIA-NGAGIMLQFVKNVIIHG 205
              +++ LWIIF+++MNIKL+  L V G KTIDGRGA VH+   G  + ++ V +VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 206 IHIHNISPCSGGMIRDS-VDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQ 264
           +HIH  +    G +  S    V      DGDA+++   +N W+DH +LS   DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 265 ASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHV 324
            ST ITISN H  NH K +LLG  DT+ +DK M+VTVAFN+F     QRMP  R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 325 VNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNCSPE-EGKSWIWRSEG 383
            NN+Y+ W +YAIGG   PTILS+GN F A +    KEVTKR+ C       +W+WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 384 DVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGAL 428
           D  +NGAYF SSG  ++   Y  ++  K E+G    ++TK AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.44
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.37
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.31
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.17
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.14
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.13
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.12
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.1
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.08
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.07
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.03
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.02
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.93
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.93
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.87
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.86
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.81
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.76
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.68
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.61
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.59
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.54
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.41
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.39
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.37
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.33
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.32
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.31
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.24
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.19
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.19
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.08
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.96
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.88
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.88
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.83
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.76
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.61
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.4
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.21
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.19
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 95.95
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.82
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.59
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.31
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.19
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.01
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 94.83
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.81
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.38
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 93.21
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 91.27
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 89.78
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 86.01
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=1.4e-104  Score=803.43  Aligned_cols=343  Identities=48%  Similarity=0.845  Sum_probs=327.3

Q ss_pred             CCCCccccccCCChhhhhhccccccccccCCCcCCCCCeEEEEcCCCCCCCCCCCCccHHHHHhcCCCeEEEEeeceEEE
Q 036607           86 TNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIK  165 (436)
Q Consensus        86 ~npid~cwr~~~~w~~~r~~la~~a~GFG~~ttGG~gG~vy~VT~~~d~~~~~p~pGtLR~av~~~~P~~IvF~~sg~I~  165 (436)
                      +||||+||||+|||+.+||+|||||+|||++||||+||++|+||+++| ++++|+|||||+||++++|+||||+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999876 5899999999999999999999999999999


Q ss_pred             eCceEEeeCCceEEeeCCccEEec-CccEEEeccccEEEECeEEeeccCCCCCce-ecCCCCcCCCCCCCCCeeEeeCCc
Q 036607          166 LQQELIVQGSKTIDGRGAKVHIAN-GAGIMLQFVKNVIIHGIHIHNISPCSGGMI-RDSVDHVGKRGQSDGDAVSIFGSS  243 (436)
Q Consensus       166 L~~~L~V~SnkTI~G~ga~v~I~~-G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i-~~s~~~~g~~~~~dgDaIsI~gs~  243 (436)
                      |+++|+|.|||||+|+|++++|.+ |.||+|++++|||||||+|+++.|..++.| +++++|+|.+..+++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999995 479999999999999999999998877777 999999999888999999999999


Q ss_pred             eEEEeeeeeccccCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccccceeEE
Q 036607          244 NIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAH  323 (436)
Q Consensus       244 nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~H  323 (436)
                      |||||||+|+|+.||++|++++|++||||||+|++|+|+||+|++|++..|+.|+||||||+|++++.+||||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998887888999999999944899999999999999


Q ss_pred             EEcceEecCcceeeecCCCceEEEeccEEecCCCCCccceeeeccCC-CCCCccceEecCCceeeecceeecCCCCCCCc
Q 036607          324 VVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNCS-PEEGKSWIWRSEGDVLLNGAYFNSSGDPKKQI  402 (436)
Q Consensus       324 vvNN~y~~w~~Yaig~s~~~~I~~egNyF~a~~~~~~k~vt~r~~~~-~~~~~~~~w~s~gD~~~nGa~f~~sg~~~~~~  402 (436)
                      ++||||++|.+|++++++++++++|||||++++++..|++++|.+++ +.+|++|+|++++|+|+||++|.+||.+...+
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999899999998876 67899999999999999999999999876654


Q ss_pred             CCCCCCccccCChhhHHHHhccccccC
Q 036607          403 QYQMDDVIKPESGTEVERITKFAGALV  429 (436)
Q Consensus       403 ~y~~~~~~~~~p~~~v~~lt~~AG~l~  429 (436)
                      +|+++++++|+|+++|++||++||||.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            699999999999999999999999995
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 436
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-138
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 3e-78
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 5e-63
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 4e-61
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 1e-53
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 3e-37
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-06
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-04
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 0.001
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 0.004
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  398 bits (1023), Expect = e-138
 Identities = 165/345 (47%), Positives = 215/345 (62%), Gaps = 4/345 (1%)

Query: 87  NPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVGTLRH 146
           NPID CWR   NW ++R  LA CA+GFGS   GGKGG  Y VT   D +  NP  GTLR+
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRY 60

Query: 147 AVIQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIAN-GAGIMLQFVKNVIIHG 205
              +++ LWIIF+++MNIKL+  L V G KTIDGRGA VH+ N G  + ++ V +VI+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 206 IHIHNISPCSGGMIRDS-VDHVGKRGQSDGDAVSIFGSSNIWLDHLTLSQAHDGLIDAIQ 264
           +HIH  +    G +  S    V      DGDA+++   +N W+DH +LS   DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 265 ASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHV 324
            ST ITISN H  NH K +LLG  DT+ +DK M+VTVAFN+F     QRMP  R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 325 VNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNC-SPEEGKSWIWRSEG 383
            NN+Y+ W +YAIGG   PTILS+GN F A +    KEVTKR+ C SP    +W+WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 384 DVLLNGAYFNSSGDPKKQIQYQMDDVIKPESGTEVERITKFAGAL 428
           D  +NGAYF SSG  ++   Y  ++  K E+G    ++TK AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.15
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.01
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.98
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.88
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.8
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.75
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.62
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.48
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.48
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.42
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.35
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.85
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.77
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.74
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.66
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.58
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.34
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.24
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.17
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 95.8
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.64
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.39
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.2
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 94.63
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.36
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 93.89
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.34
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 92.73
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=2.4e-97  Score=747.60  Aligned_cols=343  Identities=48%  Similarity=0.844  Sum_probs=314.2

Q ss_pred             CCCCccccccCCChhhhhhccccccccccCCCcCCCCCeEEEEcCCCCCCCCCCCCccHHHHHhcCCCeEEEEeeceEEE
Q 036607           86 TNPIDKCWRCKENWAEDRQALAGCALGFGSKATGGKGGKIYEVTDPSDNDMENPKVGTLRHAVIQKEPLWIIFAKDMNIK  165 (436)
Q Consensus        86 ~npid~cwr~~~~w~~~r~~la~~a~GFG~~ttGG~gG~vy~VT~~~d~~~~~p~pGtLR~av~~~~P~~IvF~~sg~I~  165 (436)
                      .||||+||||+|||+++||+||+||+|||++||||+||+||+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999977 5789999999999999999999999999999


Q ss_pred             eCceEEeeCCceEEeeCCccEEec-CccEEEeccccEEEECeEEeeccCCCCCceecCC-CCcCCCCCCCCCeeEeeCCc
Q 036607          166 LQQELIVQGSKTIDGRGAKVHIAN-GAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSV-DHVGKRGQSDGDAVSIFGSS  243 (436)
Q Consensus       166 L~~~L~V~SnkTI~G~ga~v~I~~-G~gI~I~~a~NVIIrnL~i~~~~~~~~g~i~~s~-~~~g~~~~~dgDaIsI~gs~  243 (436)
                      |+++|.|+|||||+|||++++|.. |.+|.++.++|||||||+||++.+...+.+..++ .+.+....+++|+|+|.+++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999983 4468889999999999999998876655543332 23333456889999999999


Q ss_pred             eEEEeeeeeccccCCceeeecCCccEEEeCceecCCCceeEecCCCCccCCCceeEEEEeeEEcCCCCCcCccccceeEE
Q 036607          244 NIWLDHLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAH  323 (436)
Q Consensus       244 nVWIDHcSfS~~~DGliDv~~gS~~VTISnn~f~~H~k~mLiG~sd~~~~d~~~~VTihhN~F~~~~~qR~Pr~R~G~~H  323 (436)
                      |||||||+|+|+.||+||+++++++||||||+|++|.|+||+|+++....++.++||||||+|.++..+|+|++|+|++|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999998777788999999999987778899999999999


Q ss_pred             EEcceEecCcceeeecCCCceEEEeccEEecCCCCCccceeeeccC-CCCCCccceEecCCceeeecceeecCCCCCCCc
Q 036607          324 VVNNDYNQWEMYAIGGLQGPTILSQGNRFFASNNQNAKEVTKRMNC-SPEEGKSWIWRSEGDVLLNGAYFNSSGDPKKQI  402 (436)
Q Consensus       324 vvNN~y~~w~~Yaig~s~~~~I~~egNyF~a~~~~~~k~vt~r~~~-~~~~~~~~~w~s~gD~~~nGa~f~~sg~~~~~~  402 (436)
                      ++||||++|..||+++++++++++|||||++++.+..|+++++... ...+|++|+|++++|+++||++|.++|.....+
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            9999999999999999999999999999999999988999988653 344689999999999999999999999876665


Q ss_pred             CCCCCCccccCChhhHHHHhccccccC
Q 036607          403 QYQMDDVIKPESGTEVERITKFAGALV  429 (436)
Q Consensus       403 ~y~~~~~~~~~p~~~v~~lt~~AG~l~  429 (436)
                      .|.+++++++.|++.|++|++.||||+
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            788999999999999999999999995
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure