Citrus Sinensis ID: 036608

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-----

SEREDNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLANCKKLFETNERWEAFNSSWNVLVFSATEQEYIQHLTLVYVKQTWLDKYKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLWTKLYSLVELQHTEIKASFEKSLTTVQHSFTPSVFKELRGLVARNALDMILSESKRANLIGIDISACGCVVRHTHGLPCAHEIGEYKREDLVCTSYEKSAELSCTPKMEMIIKSFEDSDGFGKMQIKRKLKELTDPSSTFLIEPTIKDKTRGRPSQKLDKSTRRDPSRFEYVVSAQDNHSPNIMSSSTTTKKPKGQRKMSVSQTKAPKHASYIDSFPFGLRPYICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFMLPASPIPPIANSWIKYHEPCAEGWATPYKTNIIAFKDLVFEVTTQETIDLASQ

cccccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEEEccccEEEEcccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccEEEEEEEccccccccccccccccccccccEEEEEEccccEEEEEEccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccc

cccccHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHcccccccccEEEEcccEEEEEEcccccccEccccccccccccccEEEEEEEcccEEEEEEEccccccccccHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHcccccccccccc

SEREDNYIWALERLKTimqddilptmIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLANCKKLFETNERWEAFNSSWNVLVFSATEQEYIQHLTLVYVKQTWLDKYKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLWTKLYSLVELQHTEIKASFEKSLTTVQHSFTPSVFKELRGLVARNALDMILSESKranligidisacgcvvrhthglpcaheigeykredlVCTSYEksaelsctpKMEMIIKSfedsdgfgKMQIKRKlkeltdpsstflieptikdktrgrpsqkldkstrrdpsrFEYVVSaqdnhspnimssstttkkpkgqrkmsvsqtkapkhasyidsfpfglrpyicgvsdvvadgncGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYfennpgreywmtmPEIGHIIASKYNVVLLHISdvlnltflplrsiplsrsshkiIAIGFVNRNHFIEvfmlpaspippianswikyhepcaegwatpyktnIIAFKDLVFEVTTQETIDLASQ

SEREDNYIWALErlktimqddilPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLANCKKLFETNERWEAFNSSWNVLVFSATEQEYIQHLTLVYVKQTWLDKYKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLWTKLYSLVELQHTEIKASFEKSLTTVQHSFTPSVFKELRGLVARNALDMILSESKRANLIGIDISACGCVVRHTHGLPCAHEIGEYKREDLVCTSYEKSaelsctpkMEMIIKSFEDSDGFGKMQIKRKlkeltdpsstflieptikdktrgrpsqkldkstrrdpsrFEYVvsaqdnhspnimssstttkkpkgqrkmsvsqtkapkhasYIDSFPFGLRPYICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFMLPASPIPPIANSWIKYHEPCAEGWATPYKTNIIAFKDLVFEVTTQetidlasq

SEREDNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLANCKKLFETNERWEAFNSSWNVLVFSATEQEYIQHLTLVYVKQTWLDKYKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLWTKLYSLVELQHTEIKASFEKSLTTVQHSFTPSVFKELRGLVARNALDMILSESKRANLIGIDISACGCVVRHTHGLPCAHEIGEYKREDLVCTSYEKSAELSCTPKMEMIIKSFEDSDGFGKMQIKRKLKELTDPSSTFLIEPTIKDKTRGRPSQKLDKSTRRDPSRFEYVVSAQDNHSPNIMSSSTTTKKPKGQRKMSVSQTKAPKHASYIDSFPFGLRPYICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNLTFlplrsiplsrssHKIIAIGFVNRNHFIEVFMLPASPIPPIANSWIKYHEPCAEGWATPYKTNIIAFKDLVFEVTTQETIDLASQ

*****NYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLANCKKLFETNERWEAFNSSWNVLVFSATEQEYIQHLTLVYVKQTWLDKYKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLWTKLYSLVELQHTEIKASFEKSLTTVQHSFTPSVFKELRGLVARNALDMILSESKRANLIGIDISACGCVVRHTHGLPCAHEIGEYKREDLVCTSYEKSAELSCTPKMEMIIKS************************************************************************************************SYIDSFPFGLRPYICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFMLPASPIPPIANSWIKYHEPCAEGWATPYKTNIIAFKDLVFEVTTQET******

SEREDNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLANCKKLFETNERWEAFNSSWNVLVFSATEQEYIQHLTLVYVKQTWLDKYKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLWTKLYSLVELQHTEIKASFEKSLTTVQHSFTPSVFKELRGLVARNALDMILSESKRANLIGIDISACGCVVRHTHGLPCAHEIGEYKREDLVCTSYEKSAELSCTPKMEMIIKSFEDSDGFGKMQIKRKLKELTDPSSTFLIEPTIKDKT**********************************************************HASYIDSFPFGLRPYICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFMLPASPIPPIANSWIKYHEPCAEGWATPYKTNIIAFKDLVFE************

SEREDNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLANCKKLFETNERWEAFNSSWNVLVFSATEQEYIQHLTLVYVKQTWLDKYKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLWTKLYSLVELQHTEIKASFEKSLTTVQHSFTPSVFKELRGLVARNALDMILSESKRANLIGIDISACGCVVRHTHGLPCAHEIGEYKREDLVCTSYEKSAELSCTPKMEMIIKSFEDSDGFGKMQIKRKLKELTDPSSTFLIEPTIKD*****************PSRFEYVVSAQDNHSPNIM************************HASYIDSFPFGLRPYICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFMLPASPIPPIANSWIKYHEPCAEGWATPYKTNIIAFKDLVFEVTTQETIDLASQ

****DNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLANCKKLFETNERWEAFNSSWNVLVFSATEQEYIQHLTLVYVKQTWLDKYKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLWTKLYSLVELQHTEIKASFEKSLTTVQHSFTPSVFKELRGLVARNALDMILSESKRANLIGIDISACGCVVRHTHGLPCAHEIGEYKREDLVCTSYEKSAELSCTPKMEMIIKSFEDSDGFGKMQIKRKLKELTDPSSTFLIEP************************************************************KAPKHASYIDSFPFGLRPYICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFMLPASPIPPIANSWIKYHEPCAEGWATPYKTNIIAFKDLVFEVTT*********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		565
297744547		701	unnamed protein product [Vitis vinifera]	0.801	0.646	0.428	1e-124
356499731		878	PREDICTED: uncharacterized protein LOC10	0.946	0.609	0.379	1e-109
356536595		877	PREDICTED: uncharacterized protein LOC10	0.952	0.613	0.383	1e-108
147776975		773	hypothetical protein VITISV_001036 [Viti	0.481	0.351	0.48	2e-75
92893886		985	Ovarian tumour, otubain [Medicago trunca	0.952	0.546	0.297	2e-69
87241356		795	Ovarian tumour, otubain [Medicago trunca	0.952	0.676	0.299	4e-69
124361025		1063	Ovarian tumour, otubain, putative [Medic	0.953	0.507	0.291	2e-66
357438051		1379	Cysteine-rich receptor-like protein kina	0.934	0.382	0.290	9e-66
356529783		1403	PREDICTED: uncharacterized protein LOC10	0.516	0.208	0.389	4e-60
357437355		515	hypothetical protein MTR_1g015680 [Medic	0.672	0.737	0.308	7e-50

>gi\|297744547\|emb\|CBI37809.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/539 (42%), Positives = 327/539 (60%), Gaps = 86/539 (15%)

Query: 1   SEREDNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVL 60
           SERE+ + WALERL++++ D +LP +++TDRE +LMNA++K+FP A+NLLCRWHIS N+L
Sbjct: 139 SEREEAHTWALERLRSMIDDAMLPRVVMTDREPSLMNALQKVFPMASNLLCRWHISTNIL 198

Query: 61  ANCKKLFETNERWEAFNSSWNVLVFSATEQEYIQHLTLV------------YVKQTWLDK 108
           ANCK  FE+  R +AF S WN++V + TE EY   L  +            Y K+ WL  
Sbjct: 199 ANCKIFFESKSRLDAFISMWNIVVLAETEDEYANRLNQLESHFHRYIQAINYCKEQWLLP 258

Query: 109 YKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLWTKLYSLVELQHTEI 168
           YKEKF+A WT+ +MHFGN T NRAE+  +KLKRQL  S+G+  + W K++SL+ELQH +I
Sbjct: 259 YKEKFVAVWTNKVMHFGNTTVNRAESTRAKLKRQLGLSRGDIESSWPKIHSLLELQHIDI 318

Query: 169 KASFEKSLTTVQHSFTPSVFKELRGLVARNALDMILSESKRANLIGIDISACGCVVRHTH 228
           K SFE SLT VQH+F   ++ E+RG V+++AL +++ E+ R+  IG+D SACGCV   TH
Sbjct: 319 KTSFEISLTNVQHNFKDPLYGEVRGSVSKSALCILVDEANRSESIGVDASACGCVYSRTH 378

Query: 229 GLPCAHEIGEYK----------------REDLVCTSYEKSAELSCTPKMEMIIKSFEDSD 272
           GLPCAHEI  YK                + DLV  S +K  ++S T  ME+  K F D+D
Sbjct: 379 GLPCAHEISSYKIRGQPIPLACVDPHWRKLDLVSVSGKKVQDVSFTTAMELFYKRFMDAD 438

Query: 273 GFGKMQIKRKLKELTDPSSTFLIEPTIKDKTRGRPSQKLDKSTRRDPSRFEYVVSAQDNH 332
             GK Q+  KL EL + +ST L+ P    KT+                            
Sbjct: 439 DIGKQQLVMKLMELVNSTSTSLVAPKENVKTK---------------------------- 470

Query: 333 SPNIMSSSTTTKKPKGQRKMSVSQTKAPKHASYIDSFPFGLRPYICGVSDVVADGNCGFR 392
                    T+  P+G                        L+PYI  V DV ADGNCGFR
Sbjct: 471 ------EGCTSSFPEG------------------------LQPYIMHVKDVAADGNCGFR 500

Query: 393 AVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNPGREYW 452
            +A+ +G+GE+ W QVR+D++ EL++++ +Y ++F    R +E++H L +F++    + W
Sbjct: 501 VIASAMGMGEEGWPQVRRDMLFELRTYWAEYAQLFRDPIRVDELIHVLEHFQSPADYDRW 560

Query: 453 MTMPEIGHIIASKYNVVLLHISDVLNLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVF 511
           MTMP++GHIIAS+YNVVL++IS  L LTFLPLRS P      ++++IGF+N NHF+E +
Sbjct: 561 MTMPDMGHIIASRYNVVLVYISMQLCLTFLPLRSAPTPLPMRRVLSIGFINDNHFVETW 619

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356499731\|ref\|XP_003518690.1\| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]	Back alignment and taxonomy information

>gi\|356536595\|ref\|XP_003536822.1\| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]	Back alignment and taxonomy information

>gi\|147776975\|emb\|CAN70078.1\| hypothetical protein VITISV_001036 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|92893886\|gb\|ABE91936.1\| Ovarian tumour, otubain [Medicago truncatula]	Back alignment and taxonomy information

>gi\|87241356\|gb\|ABD33214.1\| Ovarian tumour, otubain [Medicago truncatula]	Back alignment and taxonomy information

>gi\|124361025\|gb\|ABN08997.1\| Ovarian tumour, otubain, putative [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357438051\|ref\|XP_003589301.1\| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi\|355478349\|gb\|AES59552.1\| Cysteine-rich receptor-like protein kinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356529783\|ref\|XP_003533467.1\| PREDICTED: uncharacterized protein LOC100782358 [Glycine max]	Back alignment and taxonomy information

>gi\|357437355\|ref\|XP_003588953.1\| hypothetical protein MTR_1g015680 [Medicago truncatula] gi\|355478001\|gb\|AES59204.1\| hypothetical protein MTR_1g015680 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		565
CGD\|CAL0004344		568	orf19.4703 [Candida albicans (	0.249	0.248	0.267	5.7e-06
UNIPROTKB\|Q5AME3		568	CaO19.4703 "Putative uncharact	0.249	0.248	0.267	5.7e-06

CGD\|CAL0004344 orf19.4703 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

 Score = 139 (54.0 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 41/153 (26%), Positives = 72/153 (47%)

Query:     3 REDNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLAN 62
             +ED  I  LE LK+     + P  ++ D  ++ ++AI+ +FP ++  +C+WHI RNV   
Sbjct:    88 KEDPIISFLEFLKS---HSVTPKQVMIDCSMSELSAIKTVFPESSVSICKWHILRNVRTE 144

Query:    63 CKKLFETNERWEAFNSSWNVLVFSATEQEYIQ--HLTLVYVKQ--TWLD--KYKEKFIAA 116
              + +F   E  +   +    L  ++T+ E  Q  H      K    WL+  KY E  + +
Sbjct:   145 ARSIFNDKESQDYAVAKITALFDNSTKDEIAQKIHEFKEQFKDYPKWLNYFKYCENLLRS 204

Query:   117 WTD---FIMHFGNMTTNRAETAHSKLKRQLCSS 146
             W +     ++  N T N  E+ H  +K +   S
Sbjct:   205 WMNNAKVSLNQENSTNNCIESYHRTIKIKFIKS 237

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|Q5AME3 CaO19.4703 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		565
pfam10551		88	pfam10551, MULE, MULE transposase domain	2e-15
PLN03097		846	PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY	6e-05

>gnl\|CDD\|220806 pfam10551, MULE, MULE transposase domain	Back alignment and domain information

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 1  SEREDNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVL 60
           E E+++ W LE LK  +     P  I++D +  L  AI+++FP+A + LC WHI RN+ 
Sbjct: 30 DESEESWTWFLEGLKKALGGR-PPLTIISDGDKGLKKAIKEVFPNARHRLCLWHILRNLK 88

This domain was identified by Babu and colleagues. Length = 88

>gnl\|CDD\|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		565
PLN03097		846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF02338		121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.69
KOG2606		302	consensus OTU (ovarian tumor)-like cysteine protea	99.64
PF10551		93	MULE: MULE transposase domain; InterPro: IPR018289	99.41
PF00872		381	Transposase_mut: Transposase, Mutator family; Inte	99.15
smart00575		28	ZnF_PMZ plant mutator transposase zinc finger.	98.56
KOG2605		371	consensus OTU (ovarian tumor)-like cysteine protea	98.54
KOG3288		307	consensus OTU-like cysteine protease [Signal trans	98.18
PF10275		244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	98.11
COG3328		379	Transposase and inactivated derivatives [DNA repli	97.99
PF04434		40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.62
KOG3991		256	consensus Uncharacterized conserved protein [Funct	97.5
COG5539		306	Predicted cysteine protease (OTU family) [Posttran	97.38
PF06782		470	UPF0236: Uncharacterised protein family (UPF0236);	90.89
PF05412		108	Peptidase_C33: Equine arterivirus Nsp2-type cystei	89.65
PF01610		249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	89.56
COG5539		306	Predicted cysteine protease (OTU family) [Posttran	88.54

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.6e-40  Score=365.22  Aligned_cols=255  Identities=19%  Similarity=0.324  Sum_probs=210.3

Q ss_pred             CCchhhHHHHHHHHHHHccCCCCCcEEEeeccHHHHHHHHHhCcccchhhhHHHHHHhHHhhhhhhhcchhHHHHHHHhH
Q 036608            1 SEREDNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISRNVLANCKKLFETNERWEAFNSSW   80 (565)
Q Consensus         1 ~E~~es~~W~l~~l~~~~~~~~~P~~iiTD~~~al~~AI~~vFP~a~h~lC~~Hi~kn~~~~~~~~~~~~~~~~~~~~~~   80 (565)
                      ||+.|+|.|+|++|+++| ++..|.+||||++.||.+||++|||++.|++|+|||.+|+.+++...+...   +.|...|
T Consensus       326 dEt~eSf~WLf~tfl~aM-~gk~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~---~~f~~~f  401 (846)
T PLN03097        326 DESAATYSWLMQTWLRAM-GGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQH---ENFMAKF  401 (846)
T ss_pred             cCchhhHHHHHHHHHHHh-CCCCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhh---hHHHHHH
Confidence            799999999999999999 589999999999999999999999999999999999999999999876543   4566555


Q ss_pred             -HHHhhcccHHHHHHHHHH---HH--hhhccch---hhhhHHHHHHhccccccCccccccccchhhhhhhhhccCCCcHH
Q 036608           81 -NVLVFSATEQEYIQHLTL---VY--VKQTWLD---KYKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFV  151 (565)
Q Consensus        81 -~~i~~a~t~~efe~~~~~---~y--~~~~WL~---~~ke~W~~a~~~~~~~~g~~TTnr~ES~n~~lK~~l~~~~~~l~  151 (565)
                       ++|..+.|++||+..|..   .|  ..+.||.   +.|++||++|++..|++|+.||+++||+|+.||++++.. .+|.
T Consensus       402 ~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~-tsL~  480 (846)
T PLN03097        402 EKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKK-TTVQ  480 (846)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcC-CCHH
Confidence             578889999999999988   44  4688987   679999999999999999999999999999999999876 6899


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhhhh------------hhhcccCHHHHHHHHhHHHHHHHHHHHh---hc--------
Q 036608          152 TLWTKLYSLVEL-QHTEIKASFEKSLT------------TVQHSFTPSVFKELRGLVARNALDMILS---ES--------  207 (565)
Q Consensus       152 ~~~~~i~~~v~~-~~~e~~~~~~~~~~------------~~~~~~t~~~~~~l~~~is~~a~~~v~~---q~--------  207 (565)
                      .|++++..++.. +.+|.++++..++.            .+..+||+.+|++|+.++.....+.+..   ..        
T Consensus       481 ~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~  560 (846)
T PLN03097        481 EFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQ  560 (846)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEE
Confidence            999999999875 67778888765432            2467899999999999986543322211   00        


Q ss_pred             ----cceeec--c--ccccccCccccccccccchhhhhccccccccccccccCCCCCCChhhHHHHhhhcCCC
Q 036608          208 ----KRANLI--G--IDISACGCVVRHTHGLPCAHEIGEYKREDLVCTSYEKSAELSCTPKMEMIIKSFEDSD  272 (565)
Q Consensus       208 ----~~~~~v--~--~~~~~CsC~~~~~~GiPC~H~lavl~~~df~~~~~~~~~~~~~~p~~~~i~~r~~~~~  272 (565)
                          .+.+.|  +  ....+|+|++|+..||||+|+|+||...           .+.-.|+ .+|.+||.+-+
T Consensus       561 ~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~-----------~v~~IP~-~YILkRWTKdA  621 (846)
T PLN03097        561 DFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMC-----------QLSAIPS-QYILKRWTKDA  621 (846)
T ss_pred             EecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhc-----------CcccCch-hhhhhhchhhh
Confidence                111222  2  2356999999999999999999999888           4455566 78888887754

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae	Back alignment and domain information

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]	Back alignment and domain information

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>smart00575 ZnF_PMZ plant mutator transposase zinc finger	Back alignment and domain information

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]	Back alignment and domain information

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function	Back alignment and domain information

>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		565
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 81/551 (14%), Positives = 160/551 (29%), Gaps = 135/551 (24%)

Query: 4   EDNYIWALERLKTIMQDDILPTMIVTDRELALMNAIEKIFPSATNLLCRWHISR--NVLA 61
             NY + +  +KT  +   + T +  ++   L N  + +F        ++++SR    L 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFA-------KYNVSRLQPYLK 139

Query: 62  NCKKLFE-TNERWEA------FNSSWNVLVFSATEQEYIQHLTL--VYVKQTWLD----K 108
             + L E    +            +W  +         +Q      ++    WL+     
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIF----WLNLKNCN 193

Query: 109 YKEKFIAAWTDFIMHFGNMTTNRAETAHSKLKRQLCSSQGNFVTLW-TKLY--SLVEL-- 163
             E  +      +       T+R++   S +K ++ S Q     L  +K Y   L+ L  
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 164 -QHTEIKASFE---KSL-TT----------VQHSFTPSVFKELRGLVARNALDMILSESK 208
            Q+ +   +F    K L TT             +   S+      L       ++     
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----- 307

Query: 209 RANLIGIDIS-----ACGCVVRHTHGLPCAHE-IGEYKREDLVCTSYEKSAELSCTPKME 262
               +                      P     I E  R+ L      K        K+ 
Sbjct: 308 -LKYLDCRPQDLPREVLT-------TNPRRLSIIAESIRDGLATWDNWKHVNCD---KLT 356

Query: 263 MIIKSF----EDSDGFGKMQIKRKLKELTD-PSSTFLIEPTIK----DKTRGRPSQKLDK 313
            II+S     E ++       ++    L+  P S  +    +     D  +      ++K
Sbjct: 357 TIIESSLNVLEPAE------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 314 STR-----RDPSRFEYVVSAQDNHSPNIMSSSTTTKKPKGQRKMSVSQTKAPKHASYIDS 368
             +     + P      +      S  +        +    R + V     PK     D 
Sbjct: 411 LHKYSLVEKQPKESTISI-----PSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDL 464

Query: 369 FPFGLRPYI----------CGVSDVVADGNCGFRAV-ANL--IG--IGEDSWAQVRKDLV 413
            P  L  Y               + +      FR V  +   +   I  DS A      +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMT----LFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 414 IELQSHFNDYKR-VFEYAGRAEEVLHSLLYFENNPGREYWMTMPEIGHIIASKYNVVLLH 472
           +        YK  + +   + E +++++L F                ++I SKY      
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE----------NLICSKY------ 564

Query: 473 ISDVLNLTFLP 483
            +D+L +  + 
Sbjct: 565 -TDLLRIALMA 574

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		565
3pfy_A		185	OTU domain-containing protein 5; structural genomi	99.85
3by4_A		212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.82
3phu_A		219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.73
3phx_A		185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.72
1tff_A		234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.49
2zfy_A		234	Ubiquitin thioesterase OTUB1; otubain, structural	99.26
4dhi_B		284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.14
4ddg_A		399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.03
3dkb_A		390	Tumor necrosis factor, alpha-induced protein 3; OT	98.73
3zrh_A		454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.46

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*	Back alignment and structure

Probab=99.85  E-value=5.8e-22  Score=183.48  Aligned_cols=131  Identities=17%  Similarity=0.131  Sum_probs=95.3

Q ss_pred             cCccc-ccccccccccCCCCCchHHHHHHHhhcCcchHHHHHHHHHHHHHhcccchhhhhcchhhHHHHHhhccccCCCC
Q 036608          369 FPFGL-RPYICGVSDVVADGNCGFRAVANLIGIGEDSWAQVRKDLVIELQSHFNDYKRVFEYAGRAEEVLHSLLYFENNP  447 (565)
Q Consensus       369 ~~~~l-~~~~~~~~~v~gdG~C~fraia~~l~~~~~~~~~vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~  447 (565)
                      +-+.| +..++.+++|+|||||+|||||+||.++++.|..||+.++++|++++++|.+|+++  .|++|++.|      .
T Consensus        49 ~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~--~~e~Y~~~m------~  120 (185)
T 3pfy_A           49 FEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTE--DFTTYINRK------R  120 (185)
T ss_dssp             HHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC--------------------
T ss_pred             HHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHh------h
Confidence            44444 68889999999999999999999999999999999999999999999999999964  699999999      5


Q ss_pred             CcCCcccCCCchhhhccccceeEEEEeCCc-cccccCCcCCCCCCCCCceEEEEEecCCceEeeec
Q 036608          448 GREYWMTMPEIGHIIASKYNVVLLHISDVL-NLTFLPLRSIPLSRSSHKIIAIGFVNRNHFIEVFM  512 (565)
Q Consensus       448 ~~~~W~~~~~~g~~iA~~y~~pi~~~s~~~-~~t~~p~~~~p~~~~~~~~i~l~~~~~~Hf~sl~~  512 (565)
                      .++.|++.+.+ .++|+.|+++|++++... ...+|+-.  ..+  ..++|+|+|+.++||+||.-
T Consensus       121 ~~~~WGg~iEL-~AlS~~~~v~I~V~~~~~~~i~i~~g~--~~~--~~~~I~L~Y~~~~HYnSv~~  181 (185)
T 3pfy_A          121 KNNCHGNHIEM-QAMAEMYNRPVEVYQYSTEPINTFHGI--HQN--EDEPIRVSYHRNIHYNSVVN  181 (185)
T ss_dssp             -----CCHHHH-HHHHHHHTSCEEEESSCSSCSEEECTT--SCC--TTSCEEEEEETTTEEEEEEC
T ss_pred             CCCccchHHHH-HHHHHhhCCcEEEEECCCCCeEEecCc--cCC--CCCEEEEEECCCCCcccccC
Confidence            66889888776 689999999999998543 23333211  111  25899999999999999974

PyMOL of 3pfy

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A	Back alignment and structure

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}	Back alignment and structure

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A	Back alignment and structure

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11	Back alignment and structure

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A	Back alignment and structure

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A	Back alignment and structure

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A	Back alignment and structure

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A	Back alignment and structure

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		565
d1tffa_		228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.26

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.9e-12  Score=120.66  Aligned_cols=97  Identities=7%  Similarity=0.002  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhcccchhhhhcchhhHHHHHhh-ccccCCCCCcCCcccCCCchhhhccccceeEEEEeCCccccccCCcC
Q 036608          408 VRKDLVIELQSHFNDYKRVFEYAGRAEEVLHS-LLYFENNPGREYWMTMPEIGHIIASKYNVVLLHISDVLNLTFLPLRS  486 (565)
Q Consensus       408 vR~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~-l~~~~~~~~~~~W~~~~~~g~~iA~~y~~pi~~~s~~~~~t~~p~~~  486 (565)
                      +|.....+|++|+++|.+++.++..+++++.. +      .+++.|.+...+ .+||.+|+++|.++....+..-++...
T Consensus       129 lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v------~~~~~e~d~ieI-~aLa~al~v~I~V~~~d~~~~~~~~~~  201 (228)
T d1tffa_         129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEV------EPMATECDHIQI-TALSQALSIALQVEYVDEMDTALNHHV  201 (228)
T ss_dssp             HHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHT------SSTTCCCCHHHH-HHHHHHHTCCEEEEECC-------CCC
T ss_pred             HHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHH------ccccccCCcHHH-HHHHHHhCCCEEEEEecCCCCcccccc
Confidence            58888999999999999999877788888865 6      566788887776 589999999998876433322233322


Q ss_pred             CCCCCCCCceEEEEEecCCceEeeecCC
Q 036608          487 IPLSRSSHKIIAIGFVNRNHFIEVFMLP  514 (565)
Q Consensus       487 ~p~~~~~~~~i~l~~~~~~Hf~sl~~~~  514 (565)
                      -|.+.  ++.|+|.|. +.||+.|+..+
T Consensus       202 ~~~~~--~~~I~Lly~-pgHYdiLY~~~  226 (228)
T d1tffa_         202 FPEAA--TPSVYLLYK-TSHYNILYAAD  226 (228)
T ss_dssp             CCCCS--SCSEEEEEE-TTEEEEEEECC
T ss_pred             CCCCC--CCEEEEEeC-CCCcccCccCC
Confidence            23333  678999997 56999998654

PyMOL of d1tffa_