Citrus Sinensis ID: 036655

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MGGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQPQMIHNSGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPWCV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHHHHHHccccccccccccccccccccccccccHcccccccc
Coil and Loop (DISEMBL)
mggigekkqlkkpaqassrkgcmrgkggpenalctykgvrqrtwGKWVAEIrepnrgarlwlgtfdtsHEAAMAYDAAARKlygpdaklnlpelpsaqshhlpassvnctqhvaqrrnqpqmihnsgitcssnsplprssnndatqvynfnynnsamsfldngsvgshgklaenevkfslneqetdgfwenlnvnspvfdesIWAEaamsvdypvmgeqgllnanfvdasccgwdmlptpwcv
Flexible Loop (DISEMBL)
mggigekkqlkkpaqassrkgcmrgkggpenalctykgvrqrtwGKWVAeirepnrgarLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQPQMIHNSGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPWCV
Low Complexity Region (SEG)
MGGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQPQMIHNSGITCssnsplprssnnDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPWCV
Disordered region (IsUnstruct)
*******************************ALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYG**************************************************************VYNFNYNNSAMSFLD**************VKFSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPWC*
Disordered Region (DISOPRED)
*************************************GVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLP*********************************************************************************************DGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPWCV
Disordered Region (DISEMBL)
*************************KGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQPQMIHNSGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPWCV
Disordered Region (DISPRO)
********************************LCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPEL****************************************************************************L***EV*F*LN*QETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPWCV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQPQMIHNSGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPWCV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q9LQZ2	206	Dehydration-responsive el	yes	no	0.781	0.922	0.466	1e-40
Q8LFR2	341	Dehydration-responsive el	no	no	0.427	0.304	0.605	3e-33
P61827	307	Dehydration-responsive el	no	no	0.333	0.263	0.802	6e-33
Q9SIZ0	157	Putative dehydration-resp	no	no	0.403	0.624	0.642	4e-32
Q84ZA1	230	Dehydration-responsive el	yes	no	0.300	0.317	0.780	9e-29
Q10R18	318	Dehydration-responsive el	no	no	0.312	0.238	0.75	1e-28
A2WL19	274	Dehydration-responsive el	N/A	no	0.349	0.310	0.686	1e-28
Q0JQF7	274	Dehydration-responsive el	no	no	0.349	0.310	0.686	1e-28
Q9SVX5	277	Dehydration-responsive el	no	no	0.312	0.274	0.763	2e-28
O82132	335	Dehydration-responsive el	no	no	0.337	0.244	0.597	5e-24

>sp|Q9LQZ2|DRE2D_ARATH Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/242 (46%), Positives = 142/242 (58%), Gaps = 52/242 (21%)

Query: 4   IGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLG 63
           +G  K+ ++  QASSRKGCMRGKGGP+NA CTYKGVRQRTWGKWVAEIREPNRGARLWLG
Sbjct: 11  VGANKK-QRTVQASSRKGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLG 69

Query: 64  TFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQPQMI 123
           TFDTS EAA+AYD+AARKLYGP+A LNLPE  S +S+   ASS                 
Sbjct: 70  TFDTSREAALAYDSAARKLYGPEAHLNLPE--SLRSYPKTASS----------------- 110

Query: 124 HNSGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFSLNEQ 183
             S  T SSN+    SS++++    N               + S G++ E E+       
Sbjct: 111 PASQTTPSSNTGGKSSSDSESPCSSN--------------EMSSCGRVTE-EIS------ 149

Query: 184 ETDGFWENLNVNSPVFDE-SIWAEAAMSVDYPVMGEQGLLNANFVDASCCG----WDMLP 238
                WE++NV+ PV D+ SIW EA MS+ +P + E G  + +  D    G    WD   
Sbjct: 150 -----WEHINVDLPVMDDSSIWEEATMSLGFPWVHE-GDNDISRFDTCISGGYSNWDSFH 203

Query: 239 TP 240
           +P
Sbjct: 204 SP 205

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFR2|DRE2C_ARATH Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query: 5   GEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGT 64
           G  K ++KP    SRKGCM+GKGGPEN +C Y+GVRQR WGKWVAEIREP+ GARLWLGT
Sbjct: 41  GGPKSIRKPPPKGSRKGCMKGKGGPENGICDYRGVRQRRWGKWVAEIREPDGGARLWLGT 100

Query: 65  FDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVN 108
           F +S+EAA+AYD AA+ +YG  A+LNLPE+ +  S     ++V+
Sbjct: 101 FSSSYEAALAYDEAAKAIYGQSARLNLPEITNRSSSTAATATVS 144

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription.

Arabidopsis thaliana (taxid: 3702)

>sp|P61827|DRE2G_ARATH Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1

 Score =  140 bits (354), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 71/81 (87%)

Query: 11 KKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHE 70
          KK     SRKGCM+GKGGPENA CT++GVRQRTWGKWVAEIREPNRG RLWLGTF+TS E
Sbjct: 9  KKRNMGRSRKGCMKGKGGPENATCTFRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVE 68

Query: 71 AAMAYDAAARKLYGPDAKLNL 91
          AAMAYD AA+KLYG +AKLNL
Sbjct: 69 AAMAYDEAAKKLYGHEAKLNL 89

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIZ0|DRE2H_ARATH Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 76/98 (77%)

Query: 5   GEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGT 64
           G  K ++K     SRKGCM+GKGGPEN +C Y GVRQRTWGKWVAEIREP RGA+LWLGT
Sbjct: 36  GGSKPIRKAPPKRSRKGCMKGKGGPENGICDYTGVRQRTWGKWVAEIREPGRGAKLWLGT 95

Query: 65  FDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHL 102
           F +S+EAA+AYD A++ +YG  A+LNLP LP  Q+  L
Sbjct: 96  FSSSYEAALAYDEASKAIYGQSARLNLPLLPLCQARLL 133

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84ZA1|DRE2C_ORYSJ Dehydration-responsive element-binding protein 2C OS=Oryza sativa subsp. japonica GN=DREB2C PE=2 SV=1

 Score =  127 bits (318), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 57/73 (78%), Positives = 65/73 (89%)

Query: 18  SRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDA 77
           SRKGCM+GKGGPEN  C ++GVRQRTWGKWVAEIREPNRGARLWLGTF+T+ +AA AYD+
Sbjct: 37  SRKGCMKGKGGPENQRCPFRGVRQRTWGKWVAEIREPNRGARLWLGTFNTALDAARAYDS 96

Query: 78  AARKLYGPDAKLN 90
           AAR LYG  A+LN
Sbjct: 97  AARALYGDCARLN 109

Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10R18|DRE2E_ORYSJ Dehydration-responsive element-binding protein 2E OS=Oryza sativa subsp. japonica GN=DREB2E PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 65/76 (85%)

Query: 19 RKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAA 78
          +KG  RGKGGP+NA C Y+GVRQRTWGKWVAEIREPN+  RLWLG+F T+ EAA+AYD A
Sbjct: 11 KKGPTRGKGGPQNAACEYRGVRQRTWGKWVAEIREPNKRTRLWLGSFATAEEAALAYDEA 70

Query: 79 ARKLYGPDAKLNLPEL 94
          AR+LYGPDA LNLP L
Sbjct: 71 ARRLYGPDAFLNLPHL 86

Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WL19|DRE2A_ORYSI Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 6   EKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTF 65
           E    K PA+ S +KGCM GKGGPEN+ C Y+GVRQRTWGKWVAEIREPNRG RLWLG+F
Sbjct: 47  ENSSRKAPAKGS-KKGCMAGKGGPENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSF 105

Query: 66  DTSHEAAMAYDAAARKLYGPDAKLNL 91
            T+ EAA AYD AAR +YGP A++N 
Sbjct: 106 PTALEAAHAYDEAARAMYGPTARVNF 131

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JQF7|DRE2A_ORYSJ Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 6   EKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTF 65
           E    K PA+ S +KGCM GKGGPEN+ C Y+GVRQRTWGKWVAEIREPNRG RLWLG+F
Sbjct: 47  ENSSRKAPAKGS-KKGCMAGKGGPENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSF 105

Query: 66  DTSHEAAMAYDAAARKLYGPDAKLNL 91
            T+ EAA AYD AAR +YGP A++N 
Sbjct: 106 PTALEAAHAYDEAARAMYGPTARVNF 131

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SVX5|DRE2F_ARATH Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 64/76 (84%)

Query: 19 RKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAA 78
          +KG  RGKGGP+NALC Y+GVRQRTWGKWVAEIREP + ARLWLG+F T+ EAAMAYD A
Sbjct: 11 KKGPARGKGGPQNALCQYRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEA 70

Query: 79 ARKLYGPDAKLNLPEL 94
          A KLYG DA LNLP L
Sbjct: 71 ALKLYGHDAYLNLPHL 86

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription.

Arabidopsis thaliana (taxid: 3702)

>sp|O82132|DRE2A_ARATH Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 62/82 (75%)

Query: 29  PENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAK 88
           PEN+ C+++GVRQR WGKWVAEIREPNRG+RLWLGTF T+ EAA AYD AA+ +YGP A+
Sbjct: 72  PENSRCSFRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAAKAMYGPLAR 131

Query: 89  LNLPELPSAQSHHLPASSVNCT 110
           LN P   +++     + S  CT
Sbjct: 132 LNFPRSDASEVTSTSSQSEVCT 153

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
255538794	247	Dehydration-responsive element-binding p	0.954	0.939	0.629	4e-71
224066072	240	AP2/ERF domain-containing transcription	0.962	0.975	0.586	2e-64
224082932	241	AP2/ERF domain-containing transcription	0.958	0.966	0.607	2e-64
145322754	244	putative DRE-binding protein 5 [Populus	0.958	0.954	0.607	2e-64
317106669	238	JHL18I08.6 [Jatropha curcas]	0.909	0.928	0.595	1e-63
356518425	249	PREDICTED: dehydration-responsive elemen	0.950	0.927	0.525	6e-52
359492704	222	PREDICTED: dehydration-responsive elemen	0.880	0.963	0.524	2e-51
356509658	245	PREDICTED: dehydration-responsive elemen	0.950	0.942	0.530	3e-51
356553850	283	PREDICTED: uncharacterized protein LOC10	0.950	0.816	0.456	3e-45
356562375	287	PREDICTED: uncharacterized protein LOC10	0.950	0.804	0.447	4e-43

>gi|255538794|ref|XP_002510462.1| Dehydration-responsive element-binding protein 2G, putative [Ricinus communis] gi|223551163|gb|EEF52649.1| Dehydration-responsive element-binding protein 2G, putative [Ricinus communis]

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 153/243 (62%), Positives = 181/243 (74%), Gaps = 11/243 (4%)

Query: 4   IGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLG 63
           +GEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLG
Sbjct: 11  LGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLG 70

Query: 64  TFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQPQMI 123
           TFDTSHEAAMAYDAAARKLYGP+AKLNLPEL S++ + +PASS N        R+Q Q++
Sbjct: 71  TFDTSHEAAMAYDAAARKLYGPEAKLNLPELHSSK-NKVPASSANSQASQLGNRSQSQIL 129

Query: 124 HNSGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAE-NEVKFSLNE 182
           HNSG TC S+ P+ R +NN  T  Y++   +S +SF +      +  +AE NE       
Sbjct: 130 HNSGATCPSSGPIIR-ANNLVTPAYSY---DSIVSFPNANVDCCNANVAESNEASIYGQN 185

Query: 183 QETDG---FWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPT 239
           QE  G    WENLNVN P+FD+SIWAEAAMS+D+P M + G+  +N +D +   WD L T
Sbjct: 186 QEGAGINELWENLNVNLPLFDDSIWAEAAMSIDFPAMEDPGIFASNLMDGT--NWDALQT 243

Query: 240 PWC 242
           PWC
Sbjct: 244 PWC 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066072|ref|XP_002302006.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222843732|gb|EEE81279.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/244 (58%), Positives = 171/244 (70%), Gaps = 10/244 (4%)

Query: 1   MGGIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARL 60
           M G GEKKQ KKP QASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARL
Sbjct: 6   MSGFGEKKQFKKPEQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARL 65

Query: 61  WLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQP 120
           WLGT+DTSHEAAMAYDAAARKLYGP+AKLNLPEL    S   PAS  N    V Q  NQP
Sbjct: 66  WLGTYDTSHEAAMAYDAAARKLYGPEAKLNLPEL-QVNSSQFPASPANS--QVIQMTNQP 122

Query: 121 -QMIHNSGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFS 179
             +I NS  T + +S +P   +N+A  +    YN++ +    N SV S+G   EN+  F 
Sbjct: 123 SHLIQNSSPTSTYSSNIPNMESNEAKPIL---YNHNPIMSFSNESVDSNGMEVENDANFG 179

Query: 180 LNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPT 239
            +      F  NLNVN   F++SIWAEAA+S+++PVM + G+  +N ++ S  G D + T
Sbjct: 180 RSGDVIKEFSANLNVNM-TFNDSIWAEAALSINFPVMDDPGIFASNLMEES--GGDTMQT 236

Query: 240 PWCV 243
           PWC+
Sbjct: 237 PWCM 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082932|ref|XP_002306897.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222856346|gb|EEE93893.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/242 (60%), Positives = 171/242 (70%), Gaps = 9/242 (3%)

Query: 3   GIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL 62
           G GEKKQ KKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL
Sbjct: 8   GFGEKKQFKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL 67

Query: 63  GTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQP-Q 121
           GTFDTSHEAA AYDAAARKLYGP+AKLNLPEL    +   PAS  N    V Q   QP Q
Sbjct: 68  GTFDTSHEAATAYDAAARKLYGPEAKLNLPEL-QVNNCQFPASPAN--SQVTQMTYQPCQ 124

Query: 122 MIHNSGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFSLN 181
           +IHN   T S+ S    S   ++ ++    YN+  + +  N SV S GK A NEV F  +
Sbjct: 125 IIHNCSSTTSTCSSNTPSI--ESIEMTPMLYNHDPIMYFSNESVDSDGKGAVNEVNFGRS 182

Query: 182 EQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPW 241
           E E   FW N NVN P FD+SIW EAAMS+++PV+ + G+  +N ++ +  G D L TPW
Sbjct: 183 EVEIKEFWSNFNVNIP-FDDSIWVEAAMSINFPVVEDPGIFASNLMEGT--GRDTLQTPW 239

Query: 242 CV 243
           C+
Sbjct: 240 CM 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145322754|gb|ABP64694.1| putative DRE-binding protein 5 [Populus trichocarpa]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/242 (60%), Positives = 171/242 (70%), Gaps = 9/242 (3%)

Query: 3   GIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL 62
           G GEKKQ KKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL
Sbjct: 11  GFGEKKQFKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL 70

Query: 63  GTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQP-Q 121
           GTFDTSHEAA AYDAAARKLYGP+AKLNLPEL    +   PAS  N    V Q   QP Q
Sbjct: 71  GTFDTSHEAATAYDAAARKLYGPEAKLNLPEL-QVNNCQFPASPAN--SQVTQMTYQPCQ 127

Query: 122 MIHNSGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFSLN 181
           +IHN   T S+ S    S   ++ ++    YN+  + +  N SV S GK A NEV F  +
Sbjct: 128 IIHNCSSTTSTCSSNTPSI--ESIEMTPMLYNHDPIMYFSNESVDSDGKGAVNEVNFGRS 185

Query: 182 EQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDMLPTPW 241
           E E   FW N NVN P FD+SIW EAAMS+++PV+ + G+  +N ++ +  G D L TPW
Sbjct: 186 EVEIKEFWSNFNVNIP-FDDSIWVEAAMSINFPVVEDPGIFASNLMEGT--GRDTLQTPW 242

Query: 242 CV 243
           C+
Sbjct: 243 CM 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106669|dbj|BAJ53172.1| JHL18I08.6 [Jatropha curcas]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/247 (59%), Positives = 170/247 (68%), Gaps = 26/247 (10%)

Query: 4   IGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLG 63
           I EKKQL+KPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLG
Sbjct: 11  IPEKKQLRKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLG 70

Query: 64  TFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRR--NQPQ 121
           TFDTSHEAAMAYDAAARKLYGP+AKLNLPEL    +   P  +     H AQ +  NQ Q
Sbjct: 71  TFDTSHEAAMAYDAAARKLYGPEAKLNLPELHPNNNSRFPVET-----HSAQIQMGNQSQ 125

Query: 122 MIHN-----SGITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEV 176
             HN     S  + SS SP+ R+  ND T  Y    +N+           S+G + E E 
Sbjct: 126 GQHNSSTMSSSPSSSSGSPIIRT--NDVTPAYTHESSNTE----------SNGTVVEEEA 173

Query: 177 KFSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDM 236
               N+Q  D  W NLNVN P+FD+SIWAEAAMS+D+P M + G+  +N +D +  GWD 
Sbjct: 174 NLWQNQQGIDDLWGNLNVNLPLFDDSIWAEAAMSIDFPAMEDTGIFASNLMDVT--GWDA 231

Query: 237 LPTPWCV 243
           L TPWC+
Sbjct: 232 LHTPWCM 238

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518425|ref|XP_003527879.1| PREDICTED: dehydration-responsive element-binding protein 2D-like [Glycine max]

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/253 (52%), Positives = 161/253 (63%), Gaps = 22/253 (8%)

Query: 3   GIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL 62
           GI E+KQ+KKPAQASSRKGCMRGKGGPENA CTYKGVRQRTWGKWVAEIREPNRGARLWL
Sbjct: 7   GIEERKQVKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWL 66

Query: 63  GTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHL--PASSVNCTQHVAQRRNQP 120
           GTF+TSHEAA+AYDAAARKLYG DAKLNLPEL          P SSV+    + Q  N  
Sbjct: 67  GTFETSHEAALAYDAAARKLYGSDAKLNLPELSIKSQSQCPPPPSSVSNNTQIPQMENLQ 126

Query: 121 QMIHNSGI---TCS------SNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKL 171
           Q I N+ +   TCS      +N+P   S  +    V    Y + ++  L    + ++ K 
Sbjct: 127 QQIQNNYMDMATCSNNFNNNTNNPSEVSMASQQVGVGVPIYTSDSIVSL---PLDTNPKP 183

Query: 172 AENEVKFSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYP-VMGEQGLLNANFVDAS 230
            EN+  F  +       W  +N   PVFD+SIWAEAAMS+D+P +  E  + ++    A 
Sbjct: 184 VENDGDFRPS-------WGTMNEGLPVFDDSIWAEAAMSLDFPQIAAETAIYSSGNNLAD 236

Query: 231 CCGWDMLPTPWCV 243
              WD L TPWC+
Sbjct: 237 VGVWDSLQTPWCM 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492704|ref|XP_002280893.2| PREDICTED: dehydration-responsive element-binding protein 2D-like [Vitis vinifera]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/244 (52%), Positives = 150/244 (61%), Gaps = 30/244 (12%)

Query: 3   GIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL 62
           G+GE+KQ KK AQASSRKGCMRGKGGPENA+CTYKGVRQRTWGKWVAEIREPNRGARLWL
Sbjct: 2   GVGERKQAKKTAQASSRKGCMRGKGGPENAMCTYKGVRQRTWGKWVAEIREPNRGARLWL 61

Query: 63  GTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQPQM 122
           GTFDTS+EAA+AYDAAARKLYGP+AKLNLPEL              C Q  A      Q 
Sbjct: 62  GTFDTSYEAAIAYDAAARKLYGPEAKLNLPEL--------------CAQPPANT----QF 103

Query: 123 IHNS-----GITCSSNSPLPRSSNNDATQVYNFNYNNSAMSFLDNGSVGSHGKLAENEVK 177
            HN       IT  S +PLPR   N  T  Y   +  S +       V  H K      K
Sbjct: 104 THNQIPPNPNITPPSLTPLPRP--NIQTPPY---HKYSVVPSPATQEVPPHAKPTAINEK 158

Query: 178 FSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCGWDML 237
              N+   +G W N+NV  P  D+S+W E  MS+D+P   +  +  +N VD +   W+ML
Sbjct: 159 NGENDDGMEGVWANMNVTLPKVDDSLWTETLMSMDFPAFDDTEIFGSNLVDGNS--WEML 216

Query: 238 PTPW 241
            +PW
Sbjct: 217 QSPW 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509658|ref|XP_003523563.1| PREDICTED: dehydration-responsive element-binding protein 2D-like [Glycine max]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 160/249 (64%), Gaps = 18/249 (7%)

Query: 3   GIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL 62
           GI E+KQLKKPAQASSRKGCMRGKGGPENA CTYKGVRQRTWGKWVAEIREPNRGARLWL
Sbjct: 7   GIEERKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWL 66

Query: 63  GTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQP-- 120
           GTF+TSHEAA+AYDAAARKLYG DAKLNLPEL        P  S      V         
Sbjct: 67  GTFETSHEAALAYDAAARKLYGSDAKLNLPELSIKSQSQCPPPSPPPPSSVTNNTQMENL 126

Query: 121 QMIHNSGI---TCSSNSPLPRSSNNDATQVYNFN--YNNSAMSFLDNGSVGSHGKLAENE 175
           Q I N+ I   TCS+ + +     + A+Q       Y + ++  L    + ++ K  ENE
Sbjct: 127 QQIQNNYIDMATCSNFNNINNPEVSMASQQVGVGPIYTSDSIVSL---PLDTNPKPVENE 183

Query: 176 VKFSLNEQETDGFWENLNVNSPVFDESIWAEAAMSVDYPVMGEQGLLNANFVDASCCG-W 234
           V+F  +       W  +N   PVFD+SIWAEAAMS+D+P +  +  + A+  + +  G W
Sbjct: 184 VEFRPS-------WATMNEGLPVFDDSIWAEAAMSLDFPHIAAETAIYASGNNLADVGVW 236

Query: 235 DMLPTPWCV 243
           D L TPWC+
Sbjct: 237 DSLQTPWCM 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553850|ref|XP_003545264.1| PREDICTED: uncharacterized protein LOC100794497 [Glycine max]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/289 (45%), Positives = 158/289 (54%), Gaps = 58/289 (20%)

Query: 3   GIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL 62
           GI E+K++KKPAQASSRKGCMRGKGGPENA CTYKGVRQRTWGKWVAEIREPNRGARLWL
Sbjct: 2   GIQERKKVKKPAQASSRKGCMRGKGGPENAKCTYKGVRQRTWGKWVAEIREPNRGARLWL 61

Query: 63  GTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQHVAQRRNQPQM 122
           GTFDT+ EAA+AYDAAARKLYGPDAKLNL EL    S   PA +     H+ Q   QPQ+
Sbjct: 62  GTFDTAREAALAYDAAARKLYGPDAKLNLAEL----SVPAPALAAVNPSHMQQ---QPQV 114

Query: 123 IHNSGITCSSNSPLPRSS---NNDATQVYNFN--YNNS-------AMSFLDNGSVGSHGK 170
           +    I      PL   +    N  +    FN   NN+       A SFL + +V  +  
Sbjct: 115 VPEMLI--QQQQPLVHPTFDLVNVTSHPSGFNNILNNNPVVVSSMASSFLADAAVPVYTS 172

Query: 171 ---------------------LAENEVKFSLNEQETDG------FW-ENLNVNSPVFDES 202
                                +       S+   E++G      FW   ++   PVFD+S
Sbjct: 173 CDSILSLPSATTNYTNTNTVPMEMENYSSSIPTVESNGDNMFRSFWGPTMDDTMPVFDQS 232

Query: 203 IWAEAAMSVDYPVMGEQGLL---------NANFVDASCCGWDMLPTPWC 242
           IW EAAMS+D P++ + G             NF       WD L TP C
Sbjct: 233 IWTEAAMSLDLPIIADNGFYGRGVGGNKGGGNFFLDEVAAWDSLHTPSC 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562375|ref|XP_003549447.1| PREDICTED: uncharacterized protein LOC100776824 [Glycine max]

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 127/284 (44%), Positives = 154/284 (54%), Gaps = 53/284 (18%)

Query: 3   GIGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWL 62
           GI E+K++KKPAQASSRKGCMRGKGGPENA CTYKGVRQRTWGKWVAEIREPNRGARLWL
Sbjct: 7   GIQERKKVKKPAQASSRKGCMRGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGARLWL 66

Query: 63  GTFDTSHEAAMAYDAAARKLYGPDAKLNLPE--LPSAQ-----SH--------------- 100
           GTFDT+ EAA+AYDAAARKLYGPDAKLNLPE  +P A      SH               
Sbjct: 67  GTFDTAREAALAYDAAARKLYGPDAKLNLPELSVPYAAGVMNPSHMQQQQQQQQQPQVPQ 126

Query: 101 ----------HLPASSVNCTQH------VAQRRNQPQMIHNSGITCSSNSPLPRSSNNDA 144
                     H     VN T H           N   ++ +   +  +++  P  ++ D+
Sbjct: 127 MMMQQQQPLVHPTFDLVNVTPHSDFNNNSINILNNNPVVSSMASSFLADAAAPVYTSCDS 186

Query: 145 T-----QVYNFNYNNSAMSFLDNGSVGSHGKLAENEVKFSLNEQETDGFW-ENLNVNSPV 198
                    N+  NN+    +D     S    ++ +  F         FW   ++   PV
Sbjct: 187 IVSLPLSATNYTTNNTVPMEMDGYYYSSIAVESKEDDMFR-------PFWGPTMDDTMPV 239

Query: 199 FDESIWAEAAMSVDYPVMGEQGLL--NANFVDASCCGWDMLPTP 240
            DESIW EAAMS+DYP++G  G    N  F       WD L TP
Sbjct: 240 SDESIWTEAAMSLDYPIVGGGGGFGNNRKFFFGEATAWDSLQTP 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2005704	206	AT1G75490 [Arabidopsis thalian	0.411	0.485	0.766	3.7e-46
TAIR|locus:2146248	307	AT5G18450 [Arabidopsis thalian	0.436	0.345	0.644	6.7e-33
TAIR|locus:2063073	341	DREB2C [Arabidopsis thaliana (	0.427	0.304	0.605	8.5e-33
TAIR|locus:2063088	157	AT2G40350 [Arabidopsis thalian	0.403	0.624	0.642	2.9e-32
TAIR|locus:2153504	335	DREB2A "AT5G05410" [Arabidopsi	0.419	0.304	0.601	8.8e-31
UNIPROTKB|Q5W6R4	373	DREB2B "Dehydration-responsive	0.395	0.257	0.621	3.8e-30
UNIPROTKB|Q84ZA1	230	DREB2C "Dehydration-responsive	0.419	0.443	0.631	2.7e-29
UNIPROTKB|Q0JQF7	274	DREB2A "Dehydration-responsive	0.358	0.317	0.670	4.4e-29
TAIR|locus:2085527	330	DREB2B "DRE/CRT-binding protei	0.432	0.318	0.556	3.1e-28
TAIR|locus:2076621	277	AT3G57600 [Arabidopsis thalian	0.345	0.303	0.702	5e-28

TAIR|locus:2005704 AT1G75490 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
 Identities = 79/103 (76%), Positives = 89/103 (86%)

Query:     4 IGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLG 63
             +G  K+ ++  QASSRKGCMRGKGGP+NA CTYKGVRQRTWGKWVAEIREPNRGARLWLG
Sbjct:    11 VGANKK-QRTVQASSRKGCMRGKGGPDNASCTYKGVRQRTWGKWVAEIREPNRGARLWLG 69

Query:    64 TFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASS 106
             TFDTS EAA+AYD+AARKLYGP+A LNLPE  S +S+   ASS
Sbjct:    70 TFDTSREAALAYDSAARKLYGPEAHLNLPE--SLRSYPKTASS 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2146248 AT5G18450 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 69/107 (64%), Positives = 81/107 (75%)

Query:     6 EKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTF 65
             E+   KK     SRKGCM+GKGGPENA CT++GVRQRTWGKWVAEIREPNRG RLWLGTF
Sbjct:     4 EQPPAKKRNMGRSRKGCMKGKGGPENATCTFRGVRQRTWGKWVAEIREPNRGTRLWLGTF 63

Query:    66 DTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCTQH 112
             +TS EAAMAYD AA+KLYG +AKLNL   P  Q   +   +++ + H
Sbjct:    64 NTSVEAAMAYDEAAKKLYGHEAKLNLVH-PQQQQQVVVNRNLSFSGH 109

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2063073 DREB2C [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query:     5 GEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGT 64
             G  K ++KP    SRKGCM+GKGGPEN +C Y+GVRQR WGKWVAEIREP+ GARLWLGT
Sbjct:    41 GGPKSIRKPPPKGSRKGCMKGKGGPENGICDYRGVRQRRWGKWVAEIREPDGGARLWLGT 100

Query:    65 FDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVN 108
             F +S+EAA+AYD AA+ +YG  A+LNLPE+ +  S     ++V+
Sbjct:   101 FSSSYEAALAYDEAAKAIYGQSARLNLPEITNRSSSTAATATVS 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010286 "heat acclimation" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2063088 AT2G40350 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 63/98 (64%), Positives = 76/98 (77%)

Query:     5 GEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGT 64
             G  K ++K     SRKGCM+GKGGPEN +C Y GVRQRTWGKWVAEIREP RGA+LWLGT
Sbjct:    36 GGSKPIRKAPPKRSRKGCMKGKGGPENGICDYTGVRQRTWGKWVAEIREPGRGAKLWLGT 95

Query:    65 FDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHL 102
             F +S+EAA+AYD A++ +YG  A+LNLP LP  Q+  L
Sbjct:    96 FSSSYEAALAYDEASKAIYGQSARLNLPLLPLCQARLL 133

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010286 "heat acclimation" evidence=IEP

TAIR|locus:2153504 DREB2A "AT5G05410" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 62/103 (60%), Positives = 79/103 (76%)

Query:     8 KQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDT 67
             K+ K PA+ S +KGCM+GKGGPEN+ C+++GVRQR WGKWVAEIREPNRG+RLWLGTF T
Sbjct:    52 KKRKVPAKGS-KKGCMKGKGGPENSRCSFRGVRQRIWGKWVAEIREPNRGSRLWLGTFPT 110

Query:    68 SHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCT 110
             + EAA AYD AA+ +YGP A+LN P   +++     + S  CT
Sbjct:   111 AQEAASAYDEAAKAMYGPLARLNFPRSDASEVTSTSSQSEVCT 153

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IMP;TAS

GO:0010224 "response to UV-B" evidence=IEP;IGI

GO:0010286 "heat acclimation" evidence=IEP;RCA

GO:0009408 "response to heat" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

UNIPROTKB|Q5W6R4 DREB2B "Dehydration-responsive element-binding protein 2B" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 64/103 (62%), Positives = 76/103 (73%)

Query:     5 GEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGT 64
             G KK  K PA+ S +KGCM+GKGGPEN  C ++GVRQRTWGKWVAEIREPN+ +RLWLGT
Sbjct:    59 GPKKARKAPAKGS-KKGCMKGKGGPENTRCDFRGVRQRTWGKWVAEIREPNQQSRLWLGT 117

Query:    65 FDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSV 107
             F T+  AA AYD AAR +YGP A+ N  +      HH PA+SV
Sbjct:   118 FPTAEAAACAYDEAARAMYGPMARTNFGQ------HHAPAASV 154

GO:0003677 "DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

UNIPROTKB|Q84ZA1 DREB2C "Dehydration-responsive element-binding protein 2C" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 65/103 (63%), Positives = 77/103 (74%)

Query:     4 IGEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLG 63
             I   K  K      SRKGCM+GKGGPEN  C ++GVRQRTWGKWVAEIREPNRGARLWLG
Sbjct:    23 ISSSKSRKCCPLRRSRKGCMKGKGGPENQRCPFRGVRQRTWGKWVAEIREPNRGARLWLG 82

Query:    64 TFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASS 106
             TF+T+ +AA AYD+AAR LYG  A+LNL  L +A +   PA++
Sbjct:    83 TFNTALDAARAYDSAARALYGDCARLNLL-LAAATAGAPPAAA 124

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q0JQF7 DREB2A "Dehydration-responsive element-binding protein 2A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 59/88 (67%), Positives = 69/88 (78%)

Query:     6 EKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTF 65
             E    K PA+ S +KGCM GKGGPEN+ C Y+GVRQRTWGKWVAEIREPNRG RLWLG+F
Sbjct:    47 ENSSRKAPAKGS-KKGCMAGKGGPENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSF 105

Query:    66 DTSHEAAMAYDAAARKLYGPDAKLNLPE 93
              T+ EAA AYD AAR +YGP A++N  +
Sbjct:   106 PTALEAAHAYDEAARAMYGPTARVNFAD 133

GO:0005634 "nucleus" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2085527 DREB2B "DRE/CRT-binding protein 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 59/106 (55%), Positives = 76/106 (71%)

Query:     5 GEKKQLKKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGT 64
             GEK + K PA+ S +KGCM+GKGGP+N+ C+++GVRQR WGKWVAEIREP  G RLWLGT
Sbjct:    48 GEKPKRKVPAKGS-KKGCMKGKGGPDNSHCSFRGVRQRIWGKWVAEIREPKIGTRLWLGT 106

Query:    65 FDTSHEAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCT 110
             F T+ +AA AYD AA  +YG  A+LN P+   ++     + S  CT
Sbjct:   107 FPTAEKAASAYDEAATAMYGSLARLNFPQSVGSEFTSTSSQSEVCT 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=TAS

GO:0010286 "heat acclimation" evidence=IEP

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2076621 AT3G57600 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/84 (70%), Positives = 66/84 (78%)

Query:    11 KKPAQASSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHE 70
             K  +    +KG  RGKGGP+NALC Y+GVRQRTWGKWVAEIREP + ARLWLG+F T+ E
Sbjct:     3 KSSSMKQWKKGPARGKGGPQNALCQYRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEE 62

Query:    71 AAMAYDAAARKLYGPDAKLNLPEL 94
             AAMAYD AA KLYG DA LNLP L
Sbjct:    63 AAMAYDEAALKLYGHDAYLNLPHL 86

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	5e-31
pfam00847	53	pfam00847, AP2, AP2 domain	2e-13

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  114 bits (288), Expect = 2e-33
 Identities = 39/63 (61%), Positives = 46/63 (73%)

Query: 36 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPELP 95
          Y+GVRQR WGKWVAEIR+P++G R+WLGTFDT+ EAA AYD AA K  G  A+LN P   
Sbjct: 2  YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL 61

Query: 96 SAQ 98
             
Sbjct: 62 YDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  108 bits (273), Expect = 5e-31
 Identities = 40/61 (65%), Positives = 46/61 (75%)

Query: 34 CTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPE 93
            Y+GVRQR WGKWVAEIR+P+ G R+WLGTFDT+ EAA AYD AA KL G  A LN P+
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 94 L 94
           
Sbjct: 61 S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 62.7 bits (153), Expect = 2e-13
 Identities = 29/52 (55%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 36 YKGVRQR-TWGKWVAEIREPN--RGARLWLGTFDTSHEAAMAYDAAARKLYG 84
          YKGVR    WG+WVAEIR+P   +  R  LGTF T  EAA A  AA  KL G
Sbjct: 3  YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.81
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.8
PHA00280	121	putative NHN endonuclease	99.74
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.19

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.81  E-value=5.7e-20  Score=131.67  Aligned_cols=61  Identities=66%  Similarity=1.152  Sum_probs=56.6

Q ss_pred             CceeEEEECCCCcEEEEEeecCCCeEEeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 036655           34 CTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPEL   94 (243)
Q Consensus        34 SgyRGVr~~~~GKW~A~I~~~~~gK~i~LGtFdT~EEAA~AYD~Aa~kl~G~~A~~NFp~~   94 (243)
                      |+||||+++++|||+|+|+++..||++|||+|+|+|||+.|||++++++||.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899997777799999999944499999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.80  E-value=2.5e-19  Score=129.92  Aligned_cols=63  Identities=62%  Similarity=1.098  Sum_probs=59.7

Q ss_pred             ceeEEEECCCCcEEEEEeecCCCeEEeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCCc
Q 036655           35 TYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPELPSA   97 (243)
Q Consensus        35 gyRGVr~~~~GKW~A~I~~~~~gK~i~LGtFdT~EEAA~AYD~Aa~kl~G~~A~~NFp~~~~~   97 (243)
                      +|+||+++++|||+|+|+++.+|+.++||+|+|+|||+.|||.+++++||.++.+|||...|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589997778899999999998999999999999999999999999999999999999998875

>PHA00280 putative NHN endonuclease

Probab=99.74  E-value=4.3e-18  Score=139.23  Aligned_cols=72  Identities=18%  Similarity=0.238  Sum_probs=66.9

Q ss_pred             ccCCcccccCCCCCCCCCCCceeEE-EECCCCcEEEEEeecCCCeEEeecCCCCHHHHHHHHHHHHHHHcCCCCCC
Q 036655           15 QASSRKGCMRGKGGPENALCTYKGV-RQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKL   89 (243)
Q Consensus        15 ~~str~~N~rN~~~~~~ntSgyRGV-r~~~~GKW~A~I~~~~~gK~i~LGtFdT~EEAA~AYD~Aa~kl~G~~A~~   89 (243)
                      +.+|+++|++|++.+++|+|||||| +++..|||+|+|++  +||+++||.|+++|+|+.||+ ++++|||+||..
T Consensus        48 r~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~~  120 (121)
T PHA00280         48 RLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFARF  120 (121)
T ss_pred             hhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccccC
Confidence            4589999999999999999999999 68889999999999  999999999999999999997 778999999863

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.19  E-value=3.7e-11  Score=83.93  Aligned_cols=52  Identities=35%  Similarity=0.502  Sum_probs=45.9

Q ss_pred             CceeEE-EECCCCcEEEEEeecC-C--CeEEeecCCCCHHHHHHHHHHHHHHHcCC
Q 036655           34 CTYKGV-RQRTWGKWVAEIREPN-R--GARLWLGTFDTSHEAAMAYDAAARKLYGP   85 (243)
Q Consensus        34 SgyRGV-r~~~~GKW~A~I~~~~-~--gK~i~LGtFdT~EEAA~AYD~Aa~kl~G~   85 (243)
                      |+|+|| +++..++|+|+|++.. +  +|+++||.|++++||++||++++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            789999 6888899999999842 2  49999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-14
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		4e-14

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 36 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLP 92
          Y+GVRQR WGK+ AEIR+P + GAR+WLGTF+T+ +AA+AYD AA ++ G  A LN P
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 36 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLP 92
          Y+GVRQR WGK+ AEIR+P + GAR+WLGTF+T+ +AA+AYD AA ++ G  A LN P
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1gcc_A	63	Ethylene responsive element binding factor 1; tran	4e-34
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  116 bits (292), Expect = 4e-34
 Identities = 35/59 (59%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 36 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPE 93
          Y+GVRQR WGK+ AEIR+P + GAR+WLGTF+T+ +AA+AYD AA ++ G  A LN P 
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 21/41 (51%)

Query: 70  EAAMAYDAAARKLYGPDAKLNLPELPSAQSHHLPASSVNCT 110
           +A++       KLY  D         SA     PA ++  T
Sbjct: 26  QASL-------KLYADD---------SA-----PALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.86
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	94.76
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	92.82

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.86  E-value=2e-22  Score=146.28  Aligned_cols=60  Identities=58%  Similarity=1.060  Sum_probs=56.4

Q ss_pred             ceeEEEECCCCcEEEEEeecC-CCeEEeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 036655           35 TYKGVRQRTWGKWVAEIREPN-RGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPEL   94 (243)
Q Consensus        35 gyRGVr~~~~GKW~A~I~~~~-~gK~i~LGtFdT~EEAA~AYD~Aa~kl~G~~A~~NFp~~   94 (243)
                      +||||+.+++|||+|+|+++. +|+++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            799998778999999999986 489999999999999999999999999999999999985

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=94.76  E-value=0.00028  Score=58.57  Aligned_cols=56  Identities=7%  Similarity=-0.118  Sum_probs=39.6

Q ss_pred             CCcccccCCCCCCCCCCCceeEEEECCCCcEEEEEeecCCCeEEeecCCCCHHHHHHHHH
Q 036655           17 SSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYD   76 (243)
Q Consensus        17 str~~N~rN~~~~~~ntSgyRGVr~~~~GKW~A~I~~~~~gK~i~LGtFdT~EEAA~AYD   76 (243)
                      +|+++|++++....... ..+||..++.++|.+.|..  + +.++||.|+|.+|||++|.
T Consensus        91 ~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           91 VTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             ECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             CCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            56777777765443322 2467722445679999998  6 6788999999999999963

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=92.82  E-value=0.079  Score=39.72  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=23.7

Q ss_pred             CCCceeEE-EECCCCcEEEEEeecCCCeEEe
Q 036655           32 ALCTYKGV-RQRTWGKWVAEIREPNRGARLW   61 (243)
Q Consensus        32 ntSgyRGV-r~~~~GKW~A~I~~~~~gK~i~   61 (243)
                      .+|+|+|| |+++.+.|.|.-..  +|++.+
T Consensus         4 ~~Sg~pGVsw~kR~~~WlA~W~e--~g~rrs   32 (77)
T 3igm_B            4 MSSGYPGVSWNKRMCAWLAFFYD--GASRRS   32 (77)
T ss_dssp             CCSSSTTEEEETTTTEEEEEEEE--TTEEEE
T ss_pred             CCCCCCcEEeecCCceEEEEEec--CCeEee
Confidence            46999999 79999999999998  777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-29

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  103 bits (259), Expect = 1e-29
 Identities = 35/59 (59%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 36 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPE 93
          Y+GVRQR WGK+ AEIR+P + GAR+WLGTF+T+ +AA+AYD AA ++ G  A LN P 
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.86

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=1.4e-22  Score=145.82  Aligned_cols=60  Identities=58%  Similarity=1.060  Sum_probs=55.5

Q ss_pred             ceeEEEECCCCcEEEEEeecC-CCeEEeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 036655           35 TYKGVRQRTWGKWVAEIREPN-RGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPEL   94 (243)
Q Consensus        35 gyRGVr~~~~GKW~A~I~~~~-~gK~i~LGtFdT~EEAA~AYD~Aa~kl~G~~A~~NFp~~   94 (243)
                      +||||+.+++|||+|+|+++. +++++|||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599998777899999999864 678999999999999999999999999999999999974