Citrus Sinensis ID: 036681

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MGSALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mgsalssssckydvfinfgggdtrdnFTSHLVAALHDRnvktfideeirrgdeISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILEckgkkgqivipvfyevdpsdvcyqsgsfrdpfvmhegqfqvhpenVQKWRDGLTEASLivgldsmdfr
Flexible Loop (DISEMBL)
mgsalsssscKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEaslivgldsmdfr
Low Complexity Region (SEG)
MGSALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR
Disordered region (IsUnstruct)
*********CKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGL******
Disordered Region (DISOPRED)
**********KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEG**********KWRDGLTEASLIVGLDSMDFR
Disordered Region (DISEMBL)
********SCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR
Disordered Region (DISPRO)
********SCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSM***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.886	0.123	0.478	6e-34
O82500	1095	Putative disease resistan	no	no	0.911	0.132	0.462	4e-31
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.949	0.116	0.422	5e-27
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.943	0.423	0.364	1e-23
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.943	0.382	0.384	1e-20
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.817	0.316	0.404	1e-20
Q9SYC9	571	Vesicle-associated protei	no	no	0.905	0.252	0.358	2e-20
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.798	0.067	0.269	2e-07
Q9FL92	1372	Probable WRKY transcripti	no	no	0.559	0.064	0.329	2e-06
Q9FHE5	332	Uncharacterized protein P	no	no	0.503	0.240	0.359	0.0003

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  143 bits (360), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 1/142 (0%)

Query: 12  YDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVI 70
           YDVF++F G DTR  FTSHL   L+D+ +KTF D++ +  G  I   +  AIE S+ +++
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 71  IFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQF 130
           +FSE+YA+S+WCLNEL+KI+ECK +  Q VIP+FY+VDPS V  Q  SF   F  HE ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 131 QVHPENVQKWRDGLTEASLIVG 152
           +   E +Q+WR  L EA+ + G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 96/147 (65%), Gaps = 2/147 (1%)

Query: 6   SSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEAS 65
           SS+S +YDVF +F G D R+NF SHL+     + + TF D+ I+R   I   +  AI  S
Sbjct: 5   SSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRES 64

Query: 66  KISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVM 125
           KISV++FSE+YASS WCL+EL++I++CK ++G  V+PVFY+VDPSD+  Q+G F   F+ 
Sbjct: 65  KISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFL- 123

Query: 126 HEGQFQVHPENVQKWRDGLTEASLIVG 152
            E       E    WR  LT+A+ I+G
Sbjct: 124 -ETCCGKTEERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  120 bits (300), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 3/154 (1%)

Query: 1   MGSALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISD 60
           M  A SS S +YDVF +F G D RD+F SHL+  L  + + TFID+EI R   I   +  
Sbjct: 1   MEIASSSGSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPELLS 59

Query: 61  AIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFR 120
           AI+ S+I+++IFS++YASS WCLNEL++I +C     Q+VIP+F+ VD S+V  Q+G F 
Sbjct: 60  AIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFG 119

Query: 121 DPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLD 154
             F   E       +  Q W+  L   +++ G D
Sbjct: 120 KVF--EETCKAKSEDEKQSWKQALAAVAVMAGYD 151

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 3   SALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAI 62
           S++  +     VFINF G D R+ F S L  A+ + N+  FID++   G ++       I
Sbjct: 5   SSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFV-RI 63

Query: 63  EASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDP 122
           + S+++V+IFS+DY SS+WCL+EL +I +C  + G   IP+FY++ PS V    G F D 
Sbjct: 64  QESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDT 123

Query: 123 FVMHEGQFQVHPENVQKWRDGLTEASLIVGL 153
           F + + +++  PE  QKW++ L     + GL
Sbjct: 124 FRVLKEKYKNDPERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 82/151 (54%), Gaps = 1/151 (0%)

Query: 3   SALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAI 62
           S +  +     VFI F G D R +F S LV AL + N+  FIDE    G E++  ++  I
Sbjct: 6   SVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMANLLT-RI 64

Query: 63  EASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDP 122
           E S+++++IFS D+  S  CLNEL KI E K +   IVIP+FY+V PS V +  G F D 
Sbjct: 65  EESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKFGDN 124

Query: 123 FVMHEGQFQVHPENVQKWRDGLTEASLIVGL 153
           F   E   +      QKW++ L      +G+
Sbjct: 125 FRALERNNRHMLPITQKWKEALESIPGSIGM 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 1/131 (0%)

Query: 14  VFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFS 73
           VFINF G D R  F S L  AL    +  FIDE+  RG  +  ++ D I  SKI+++IFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYL-ISLFDTIGESKIALVIFS 82

Query: 74  EDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVH 133
           E Y  S WC++EL+KI E   +   I+IP+FY +D   V   +G F D F     ++Q  
Sbjct: 83  EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142

Query: 134 PENVQKWRDGL 144
           P+ + KW + L
Sbjct: 143 PKKLHKWTEAL 153

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 82/145 (56%), Gaps = 1/145 (0%)

Query: 11  KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVI 70
           +Y VFINF G + R++F   LV A+    +  F DE   RG  ++  +   IE S+++V 
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-YLFRRIEESRVAVA 415

Query: 71  IFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQF 130
           IFSE Y  S WCL+EL+K+ E   +   +V+PVFY ++ +      G+F D     E ++
Sbjct: 416 IFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWEY 475

Query: 131 QVHPENVQKWRDGLTEASLIVGLDS 155
           +  PE +QKW++ L+     +GL S
Sbjct: 476 RSEPERIQKWKEALSSVFSNIGLTS 500

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 25/152 (16%)

Query: 7   SSSCKYDVFINFGGGD-TRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEAS 65
           SSS  YDV I +G  D + ++F SHL A+L  R +  +      + +E+     DA+   
Sbjct: 663 SSSKDYDVVIRYGRADISNEDFISHLRASLCRRGISVY-----EKFNEV-----DALPKC 712

Query: 66  KISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVM 125
           ++ +I+ +  Y  S      LL ILE +  + ++V P+FY + P D    S ++   ++ 
Sbjct: 713 RVLIIVLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCNSKNYERFYLQ 767

Query: 126 HEGQFQVHPENVQKWRDGLTEASLIVGLDSMD 157
            E          +KW+  L E + + G    D
Sbjct: 768 DE---------PKKWQAALKEITQMPGYTLTD 790

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 22  DTRDNFTSHLVAALHDRNVK-TFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSK 80
           + R +F SHL  AL  + V   FID +    D +S      +E +++SV+I   +   S 
Sbjct: 15  EVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILPGNRTVS- 69

Query: 81  WCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSG 117
             L++L+K+L+C+  K Q+V+PV Y V  S+  + S 
Sbjct: 70  --LDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSA 104

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana GN=PP2A7 PE=4 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 22  DTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKW 81
           D      + L   L ++N+  FIDEE  RG  +   +   I+ SKIS+ IFSE    SK 
Sbjct: 52  DVSKGLINFLEPVLQNKNINVFIDEEEVRGKGLKN-LFKRIQDSKISLAIFSE----SKC 106

Query: 82  CLNELLKILECKGKKGQIVIPVFYEVDPS 110
             N+LLK      +     IP+FY+VD +
Sbjct: 107 DFNDLLK----NNESADEAIPIFYKVDAT 131

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255564976	944	TMV resistance protein N, putative [Rici	0.937	0.157	0.583	4e-43
255561496	876	TMV resistance protein N, putative [Rici	0.987	0.179	0.566	1e-42
356545721	653	PREDICTED: protein SUPPRESSOR OF npr1-1,	0.905	0.220	0.577	2e-42
356569977	833	PREDICTED: TMV resistance protein N-like	0.924	0.176	0.552	5e-42
317106744	947	JHS03A10.2 [Jatropha curcas]	0.937	0.157	0.563	5e-42
357449525	1128	TMV resistance protein N [Medicago trunc	0.987	0.139	0.556	7e-42
124359513	1230	TIR [Medicago truncatula]	0.987	0.127	0.556	8e-42
255555357	1094	leucine-rich repeat-containing protein,	0.937	0.136	0.570	2e-41
356497765	1135	PREDICTED: TMV resistance protein N-like	0.968	0.135	0.522	8e-41
357486483	242	TMV resistance protein N [Medicago trunc	0.905	0.595	0.541	1e-40

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 107/149 (71%)

Query: 11  KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVI 70
           KYDVF++F G DTRDNFTSHL AALH + +K F+D+++ RG+EIS A+   IE S +SVI
Sbjct: 15  KYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVSVI 74

Query: 71  IFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQF 130
           IFSE+YA S WCL+EL+KILECK   GQIV+PVFY VDPSDV  Q G F   F+ HE  F
Sbjct: 75  IFSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEKCF 134

Query: 131 QVHPENVQKWRDGLTEASLIVGLDSMDFR 159
           +   + +QKWR  LTEA+ I G  S   R
Sbjct: 135 KERIDKLQKWRAALTEAANISGWSSSVIR 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/157 (56%), Positives = 111/157 (70%)

Query: 3   SALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAI 62
           + L++S  KYDVF++F G DTRDNFTSHL +AL+ + + TF+D+EI+RG+EIS +I+ AI
Sbjct: 2   APLATSEKKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKAI 61

Query: 63  EASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDP 122
           + SK+SVIIFSE YA SKWCL+EL KILECK   GQIVIPVFY VDP  V  Q GSF   
Sbjct: 62  KGSKLSVIIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFACA 121

Query: 123 FVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR 159
           F  HE   +   E V+ WR  L EA  I G +S+  R
Sbjct: 122 FAKHEETLKERMEKVESWRSALNEAGSISGWNSLVAR 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545721|ref|XP_003541284.1| PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Glycine max]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 112/149 (75%), Gaps = 5/149 (3%)

Query: 11  KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVI 70
           KYDVF++F G DTR NFT HL  AL  + +KT+IDE++ +GD+I+ A++ AIE S IS++
Sbjct: 23  KYDVFLSFRGEDTRRNFTCHLYEALMQKKIKTYIDEQLEKGDQIALALTKAIEDSCISIV 82

Query: 71  IFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQF 130
           IFS++YASSKWCL EL KILECK +KGQIVIPVFY +DPS V  Q GS++  F   EG+ 
Sbjct: 83  IFSDNYASSKWCLGELFKILECKKEKGQIVIPVFYNIDPSHVRKQIGSYKQAFAKLEGE- 141

Query: 131 QVHPENVQKWRDGLTEASLIVGLDSMDFR 159
              PE   KW+D LTEA+ +VGLDS ++R
Sbjct: 142 ---PE-CNKWKDALTEAANLVGLDSKNYR 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569977|ref|XP_003553169.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 110/152 (72%), Gaps = 5/152 (3%)

Query: 8   SSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKI 67
           S  KYDVF++F G DTR NFTSHL  AL  + V+T+IDE + +GDEIS A+  AIE S +
Sbjct: 16  SPKKYDVFLSFRGEDTRRNFTSHLYEALKQKKVETYIDEHLEKGDEISPALIKAIEDSHV 75

Query: 68  SVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHE 127
           S+++FS++YASSKWCL EL+KIL+CK  +GQIVIPVFYE+DPSDV  Q+GS+   F  HE
Sbjct: 76  SIVVFSKNYASSKWCLVELIKILDCKKDRGQIVIPVFYEIDPSDVRKQTGSYEQAFAKHE 135

Query: 128 GQFQVHPENVQKWRDGLTEASLIVGLDSMDFR 159
           G+      +  KW+  LTEA+ + G DS  +R
Sbjct: 136 GE-----PSCNKWKTALTEAANLAGWDSRTYR 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 107/149 (71%)

Query: 11  KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVI 70
           +YDVF++F G DTRD+FTSHL AAL D+ ++TFID  + RG EIS+++  AIE SKISV 
Sbjct: 9   RYDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIEESKISVP 68

Query: 71  IFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQF 130
           I SE+YASSKWCL EL +I++C  K GQIVIPVFY + PSDV  Q+GSF D F  +E   
Sbjct: 69  ILSENYASSKWCLEELAEIIKCMKKNGQIVIPVFYRIRPSDVRNQTGSFHDAFARYEKSL 128

Query: 131 QVHPENVQKWRDGLTEASLIVGLDSMDFR 159
            V+ + VQ+WR  L E + + G DSM  R
Sbjct: 129 MVNKDKVQRWRAALKEVAGLSGWDSMAIR 157

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449525|ref|XP_003595039.1| TMV resistance protein N [Medicago truncatula] gi|355484087|gb|AES65290.1| TMV resistance protein N [Medicago truncatula]

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 3   SALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDE-EIRRGDEISTAISDA 61
           S L  +S  +DVFI+F G DTR  FTSHL  AL    +KTFID+ E+++GDEIS+A+  A
Sbjct: 13  STLEVASNSFDVFISFRGDDTRRKFTSHLNEALKKSGLKTFIDDNELKKGDEISSALIKA 72

Query: 62  IEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRD 121
           IE S  S++I SE+YASSKWCLNEL+KILECK   GQIVIP+FYE+DPS V YQ GS+  
Sbjct: 73  IEESCASIVILSENYASSKWCLNELVKILECKKDNGQIVIPIFYEIDPSHVRYQIGSYGQ 132

Query: 122 PFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR 159
            F  +E   +   +N+QKW+D LTE S + G DS + R
Sbjct: 133 AFAKYEKNLRHKKDNLQKWKDALTEVSKLSGWDSKNSR 170

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359513|gb|ABN05946.1| TIR [Medicago truncatula]

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 3   SALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDE-EIRRGDEISTAISDA 61
           S L  +S  +DVFI+F G DTR  FTSHL  AL    +KTFID+ E+++GDEIS+A+  A
Sbjct: 115 STLEVASNSFDVFISFRGDDTRRKFTSHLNEALKKSGLKTFIDDNELKKGDEISSALIKA 174

Query: 62  IEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRD 121
           IE S  S++I SE+YASSKWCLNEL+KILECK   GQIVIP+FYE+DPS V YQ GS+  
Sbjct: 175 IEESCASIVILSENYASSKWCLNELVKILECKKDNGQIVIPIFYEIDPSHVRYQIGSYGQ 234

Query: 122 PFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR 159
            F  +E   +   +N+QKW+D LTE S + G DS + R
Sbjct: 235 AFAKYEKNLRHKKDNLQKWKDALTEVSKLSGWDSKNSR 272

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/149 (57%), Positives = 104/149 (69%)

Query: 11  KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVI 70
           KYDVF++F G DTR NFTSHL AAL+ + + TFID+++ RG+EIS ++  AIE SKISV+
Sbjct: 22  KYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKISVV 81

Query: 71  IFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQF 130
           I S+DY SSKWCL EL+KILEC   +GQ+VIPVFY VDPS V  Q+GSF D F  HE   
Sbjct: 82  IISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEESL 141

Query: 131 QVHPENVQKWRDGLTEASLIVGLDSMDFR 159
            V  E VQ WR  L E + + G  S   R
Sbjct: 142 SVSKEKVQSWRAALKEVANLSGWHSTSTR 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497765|ref|XP_003517729.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 113/159 (71%), Gaps = 5/159 (3%)

Query: 6   SSSSC-----KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISD 60
           SSSSC     +YDVF++F G DTR   TSHL  AL    + T+ID  +++GDEIS A+ +
Sbjct: 11  SSSSCVASLKRYDVFLSFRGEDTRKIITSHLYHALFQAELATYIDYRLQKGDEISQALIE 70

Query: 61  AIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFR 120
           AIE S++SVIIFSE YA+SKWCL+E+ KI+ECK  +GQ+VIPVFY++DPS +  Q GSF+
Sbjct: 71  AIEESQVSVIIFSEKYATSKWCLDEITKIIECKEGQGQVVIPVFYKIDPSHIRKQQGSFK 130

Query: 121 DPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR 159
             FV HE   ++  + VQKWR+ LT+A+ + G D   +R
Sbjct: 131 QAFVEHEQDLKITTDRVQKWREALTKAANLAGWDFQTYR 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 110/144 (76%)

Query: 11  KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVI 70
           K++VF++F G DTR  FTSHL A L   +V T+ID  ++RGDEIS+A+  AIE + +SV+
Sbjct: 13  KHEVFLSFRGEDTRYTFTSHLHATLTRLDVGTYIDYHLQRGDEISSALLRAIEEASLSVV 72

Query: 71  IFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQF 130
           +FS++Y +SKWCL+EL+KILECK  +GQIV+P+FY+++PSDV  Q+GS+ D FV HE +F
Sbjct: 73  VFSKNYGNSKWCLDELVKILECKKMRGQIVLPIFYDIEPSDVRNQTGSYADAFVKHEERF 132

Query: 131 QVHPENVQKWRDGLTEASLIVGLD 154
             + E VQKWR+ L EA+ + G D
Sbjct: 133 HGNLERVQKWREALREAANLSGWD 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.918	0.119	0.513	4e-34
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.987	0.137	0.471	3.3e-33
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.893	0.453	0.476	2e-31
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.937	0.136	0.460	1.2e-28
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.955	0.155	0.452	2.1e-28
TAIR|locus:2129221	1147	RPP4 "recognition of peronospo	0.949	0.131	0.480	1.2e-27
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.987	0.108	0.433	1.3e-27
TAIR|locus:2151466	1353	VICTL "VARIATION IN COMPOUND T	0.930	0.109	0.430	1.5e-27
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.962	0.124	0.462	1.7e-27
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.955	0.135	0.445	5e-27

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 4.0e-34, P = 4.0e-34
 Identities = 76/148 (51%), Positives = 102/148 (68%)

Query:     6 SSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEAS 65
             S SS ++DVF++F G DTR+NFT HL  AL  R + +FID+ +RRGD + TA+ D IE S
Sbjct:     5 SPSSAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNL-TALFDRIEKS 63

Query:    66 KISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVM 125
             KI++I+FS +YA+S WCL EL+KILEC+    Q+V+P+FY+VD SDV  Q  SF  PF +
Sbjct:    64 KIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQRNSFAVPFKL 123

Query:   126 HEGQFQ-VHPENVQKWRDGLTEASLIVG 152
              E  F  V PE +  W+  L  AS I+G
Sbjct:   124 PELTFPGVTPEEISSWKAALASASNILG 151

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 374 (136.7 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 75/159 (47%), Positives = 106/159 (66%)

Query:     1 MGSALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAIS 59
             M S+ SSS   YDVF++F G DTR  FTSHL   L+D+ +KTF D++ +  G  I   + 
Sbjct:     1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELC 60

Query:    60 DAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSF 119
              AIE S+ ++++FSE+YA+S+WCLNEL+KI+ECK +  Q VIP+FY+VDPS V  Q  SF
Sbjct:    61 KAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESF 120

Query:   120 RDPFVMHEGQFQVHPENVQKWRDGLTEASLIVG-LDSMD 157
                F  HE +++   E +Q+WR  L EA+ + G  D+ D
Sbjct:   121 AKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRD 159

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 70/147 (47%), Positives = 95/147 (64%)

Query:     6 SSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEAS 65
             SS   K+DVFI+F   DTRDNF SHL   L  + +KTF+ +E+   +    ++  AIE S
Sbjct:     3 SSPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLK-AIEVS 61

Query:    66 KISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVM 125
             KISVI+FSE++  S+WCL+E++ IL+CK K GQIVIPV Y VDP D+  Q+GSF D F  
Sbjct:    62 KISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAK 121

Query:   126 HEGQFQVHPENVQKWRDGLTEASLIVG 152
                +     E +Q+W+D  TEA  + G
Sbjct:   122 RRDK----AEQLQEWKDSFTEAINLPG 144

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 70/152 (46%), Positives = 99/152 (65%)

Query:     1 MGSALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISD 60
             M S+ SS+S +YDVF +F G D R+NF SHL+     + + TF D+ I+R   I   +  
Sbjct:     1 MASS-SSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRA 59

Query:    61 AIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFR 120
             AI  SKISV++FSE+YASS WCL+EL++I++CK ++G  V+PVFY+VDPSD+  Q+G F 
Sbjct:    60 AIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFG 119

Query:   121 DPFVMHEGQFQVHPENVQKWRDGLTEASLIVG 152
               F+  E       E    WR  LT+A+ I+G
Sbjct:   120 MSFL--ETCCGKTEERQHNWRRALTDAANILG 149

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 72/159 (45%), Positives = 101/159 (63%)

Query:     3 SALSSSSC-KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDA 61
             S+  SSSC KYDVF +F G D R NF SHL+     + + TF D+ I R   I   + +A
Sbjct:     5 SSSGSSSCWKYDVFPSFRGEDVRGNFLSHLMKEFESKGIVTFKDDLIERSQTIGLELKEA 64

Query:    62 IEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRD 121
             +  SKI V+IFS++YASS WCL+EL++IL+CK ++   +IP+FY+V+PSDV  Q+G F  
Sbjct:    65 VRQSKIFVVIFSKNYASSSWCLDELVEILKCKEERR--LIPIFYKVNPSDVRNQTGKFGR 122

Query:   122 PF-VMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR 159
              F    EG+   + E   KW+  LTEA+ I G DS  ++
Sbjct:   123 GFRETCEGK---NDETQNKWKAALTEAANIAGEDSQSWK 158

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129221 RPP4 "recognition of peronospora parasitica 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 75/156 (48%), Positives = 99/156 (63%)

Query:     1 MGSALSS-SSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAIS 59
             M S+ SS SS +YDVF +F G D R  F SHL+ AL  R++ TF+D  I R   I+ A+ 
Sbjct:     1 MASSSSSPSSRRYDVFPSFSGVDVRKTFLSHLIEALDRRSINTFMDHGIVRSCIIADALI 60

Query:    60 DAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSF 119
              AI  ++IS++IFSE+YASS WCLNEL++I +C  K  Q+VIPVFY VDPS V  Q G F
Sbjct:    61 TAIREARISIVIFSENYASSTWCLNELVEIHKCYKKGEQMVIPVFYGVDPSHVRKQIGGF 120

Query:   120 RDPFVMHEGQFQVHPENV-QKWRDGLTEASLIVGLD 154
              D F   +   +  PE+  Q+W   LT+ S + G D
Sbjct:   121 GDVF---KKTCEDKPEDQKQRWVKALTDISNLAGED 153

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=ISS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 69/159 (43%), Positives = 98/159 (61%)

Query:     1 MGSALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISD 60
             M ++ SS   +YDVF +F G D R  F SHL+ AL  +++ TFID  I R   I+  +  
Sbjct:     1 MAASSSSGRRRYDVFPSFSGVDVRKTFLSHLIEALDGKSINTFIDHGIERSRTIAPELIS 60

Query:    61 AIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFR 120
             AI  ++IS++IFS++YASS WCLNEL++I +C    GQ+VIPVFY+VDPS+V  Q+G F 
Sbjct:    61 AIREARISIVIFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQTGEFG 120

Query:   121 DPFVMH-EGQFQVHP-ENVQKWRDGLTEASLIVGLDSMD 157
               F    E      P +  Q+W   LT+ + I G D ++
Sbjct:   121 KVFEKTCEVSKDKQPGDQKQRWVQALTDIANIAGEDLLN 159

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2151466 VICTL "VARIATION IN COMPOUND TRIGGERED ROOT growth response-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 65/151 (43%), Positives = 96/151 (63%)

Query:     6 SSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEAS 65
             SS +  YDVF +F G D R NF SHL+  LH ++V +F D+ + R   +   +  AI  S
Sbjct:     3 SSRNWVYDVFPSFSGTDVRRNFLSHLLKGLH-KSVNSFRDQNMERSQSLDPMLKQAIRDS 61

Query:    66 KISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVM 125
             +I++++FS++YASS WCLNELL+I++CK + GQ+VIP+FY +DPS V +Q G F   F  
Sbjct:    62 RIALVVFSKNYASSSWCLNELLEIVKCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEE 121

Query:   126 HEGQFQVHPENVQKWRDGLTEASLIVGLDSM 156
               G+     E +Q W   LT+ + + G DS+
Sbjct:   122 TCGR-NTEEEKIQ-WEKALTDVANLAGFDSV 150

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 74/160 (46%), Positives = 101/160 (63%)

Query:     1 MGSALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISD 60
             M S+ SS S  YDVF +F G D R +F SHL+  LH +++ TFID  I R   I+  +  
Sbjct:     1 MASS-SSRSWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAPDLLS 59

Query:    61 AIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFR 120
             AI  S IS+++FS+ YASS WCLNEL++I +C  +  QIVIP+FYEVDPSDV  Q+  F 
Sbjct:    60 AINNSMISIVVFSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQTREFG 119

Query:   121 DPF-VMHEGQFQVHPENV-QKWRDGLTEASLIVGLDSMDF 158
             + F V   G+     E+V Q+W + L E + I G DS ++
Sbjct:   120 EFFKVTCVGK----TEDVKQQWIEALEEVASIAGHDSKNW 155

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 5.0e-27, P = 5.0e-27
 Identities = 70/157 (44%), Positives = 98/157 (62%)

Query:     1 MGSALSSS-SCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAIS 59
             M S+ SSS +  YDVF +F G D R  F SH +  L  +++ TF D E+ R   I+  + 
Sbjct:     1 MASSSSSSRNWSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPELV 60

Query:    60 DAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSF 119
             +AI+ S+I+VI+FS++YASS WCLNELL+I+ C    GQ VIPVFY +DPS +  QSG F
Sbjct:    61 EAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSGEF 120

Query:   120 RDPFVMHEGQFQVHPENVQ-KWRDGLTEASLIVGLDS 155
              + F   +   Q   E V+ +W+  LT+ S I+G  S
Sbjct:   121 GEAF---KKTCQNQTEEVKNQWKQALTDVSNILGYHS 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
pfam01582	135	pfam01582, TIR, TIR domain	4e-38
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-37
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	1e-36
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	3e-18
pfam13676	102	pfam13676, TIR_2, TIR domain	2e-12

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  126 bits (319), Expect = 4e-38
 Identities = 51/131 (38%), Positives = 85/131 (64%), Gaps = 3/131 (2%)

Query: 14  VFINFGGGDTRDNFTSHLVAALHDRNVKTFIDE-EIRRGDEISTAISDAIEASKISVIIF 72
           VF++F G D RD F SHL+  L ++ +K  ID+ +   G+ I   + +AIE S+ +++IF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 73  SEDYASSKWCLNELLKILECKGKKG--QIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQF 130
           S +YASS+WCL+EL++I++C  + G  ++++P+FY+VDPSDV  QSG F   F+      
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 131 QVHPENVQKWR 141
               + ++ W+
Sbjct: 121 GDKEDKIRFWK 131

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  135 bits (340), Expect = 2e-37
 Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 6/156 (3%)

Query: 3   SALSSSSCK--YDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISD 60
           ++ SSSS    YDVF +F G D R  F SH +  L  + +  F D EI R   +   +  
Sbjct: 2   ASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQ 61

Query: 61  AIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFR 120
           AI  S+I+V++FS++YASS WCLNELL+I+ CK + GQ+VIPVFY +DPS V  Q+G F 
Sbjct: 62  AIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFG 121

Query: 121 DPFVMHEGQFQVHPENVQK-WRDGLTEASLIVGLDS 155
           + F   E   Q   E+ +  W+  LT+ + I+G  S
Sbjct: 122 EAF---EKTCQNKTEDEKIQWKQALTDVANILGYHS 154

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  122 bits (309), Expect = 1e-36
 Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 4/142 (2%)

Query: 11  KYDVFINFGGG-DTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISV 69
           +YDVFI++ G  D R+ F SHL+  L    +  FID+    G ++   I +AIE S+I++
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAI 59

Query: 70  IIFSEDYASSKWCLNELLKILECKGKKGQI-VIPVFYEVDPSDVCYQSGSFRDPFVMHEG 128
           ++ S +YA S+WCL+EL+  LE   ++G + VIP+FYEV PSDV  Q G FR  F  +  
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 129 QFQVHPENVQKWRDGLTEASLI 150
           ++    E  Q W+  L      
Sbjct: 120 KW-PEDEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 17/150 (11%)

Query: 5   LSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFID-EEIRRGDEISTAISDAIE 63
            SSS+   DVFIN  G DT+    + L   L   N++ F+D + ++ GD++   I+ AI 
Sbjct: 20  SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIR 79

Query: 64  ASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPF 123
             K+ V +FS  Y  S +CL+EL  I+E K +    VIP+F +V PS +           
Sbjct: 80  NCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLRVVDNGTCP-- 133

Query: 124 VMHEGQFQVHPENVQKWRDGLTEASLIVGL 153
                      E ++++   L EA   VGL
Sbjct: 134 ----------DEEIRRFNWALEEAKYTVGL 153

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 59.9 bits (146), Expect = 2e-12
 Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 14  VFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFS 73
           VFI++   D    +   L  AL    ++ ++D +I  G++    I +A+ ++ + +++ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 74  EDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDV 112
             Y +S WC  E    LE    +G+ +IPV   ++  ++
Sbjct: 59  PAYLASPWCRAEWGAALE----RGKRLIPVR--LEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.94
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.81
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.23
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.86
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.23
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.52
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	96.05
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	94.96
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	94.51
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	90.67
COG4271	233	Predicted nucleotide-binding protein containing TI	87.04
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	85.03
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	84.38
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	80.67

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=2.6e-44  Score=269.92  Aligned_cols=137  Identities=35%  Similarity=0.536  Sum_probs=125.2

Q ss_pred             CCCCCCCeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhH
Q 036681            4 ALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWC   82 (159)
Q Consensus         4 ~~s~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc   82 (159)
                      +||++..+|||||||+++|+|+.|+++|+.+|+++||++|+|+. +.+|+.+.++|.+||++|+++|+|+||+|+.|.||
T Consensus        19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC   98 (187)
T PLN03194         19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC   98 (187)
T ss_pred             cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence            35556678999999999999999999999999999999999998 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHHhccccceecc
Q 036681           83 LNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSM  156 (159)
Q Consensus        83 ~~El~~~~~~~~~~~~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~  156 (159)
                      ++||..++++.+    .||||||+|+|+||++|..            ...+.+++++||+||++|++++|++++
T Consensus        99 LdEL~~I~e~~~----~ViPIFY~VdPsdVr~q~~------------~~~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194         99 LHELALIMESKK----RVIPIFCDVKPSQLRVVDN------------GTCPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             HHHHHHHHHcCC----EEEEEEecCCHHHhhcccc------------CCCCHHHHHHHHHHHHHHhccccccCC
Confidence            999999998743    8999999999999999732            112469999999999999999999875

>PLN03210 Resistant to P

Probab=100.00  E-value=1.7e-43  Score=327.12  Aligned_cols=157  Identities=41%  Similarity=0.733  Sum_probs=148.6

Q ss_pred             CCCCCCC-CCCeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCC
Q 036681            1 MGSALSS-SSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASS   79 (159)
Q Consensus         1 m~s~~s~-~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S   79 (159)
                      ||||||+ +.++|||||||+++|+|+.|++||+.+|.++||.+|.|+++..|+.+.+++.+||++|+++|+|+|++|+.|
T Consensus         1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s   80 (1153)
T PLN03210          1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS   80 (1153)
T ss_pred             CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence            7776554 569999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhcccCceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHHhccccceeccCCC
Q 036681           80 KWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR  159 (159)
Q Consensus        80 ~wc~~El~~~~~~~~~~~~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~~~~  159 (159)
                      .||++||.++++|+++.+++||||||+|+|+||++|+|.||++|.+++++.  +.|++++||+||++|++++|+++.+|+
T Consensus        81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~  158 (1153)
T PLN03210         81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP  158 (1153)
T ss_pred             hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence            999999999999999899999999999999999999999999999988764  478999999999999999999998875

syringae 6; Provisional

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.94  E-value=3.2e-26  Score=165.01  Aligned_cols=137  Identities=38%  Similarity=0.683  Sum_probs=114.7

Q ss_pred             eecEEEeccC-CccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHH
Q 036681           11 KYDVFINFGG-GDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKI   89 (159)
Q Consensus        11 ~yDVFISy~~-~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~   89 (159)
                      +|||||||++ ++....|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+|+||+|..|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            4999999999 34457899999999999999999998733333333 999999999999999999999999999999999


Q ss_pred             HHhhcc-cCceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHHhcc
Q 036681           90 LECKGK-KGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASL  149 (159)
Q Consensus        90 ~~~~~~-~~~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~v~~  149 (159)
                      +++..+ ...+||||+++..|.++..+.+.++.++..+......+..+ +.|+.++..+.+
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            988644 66799999999888889999999999998885555433333 789999987764

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=2e-27  Score=172.85  Aligned_cols=133  Identities=35%  Similarity=0.568  Sum_probs=116.9

Q ss_pred             EEEeccCCccchhHHHHHHHHhhcC--CceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHH
Q 036681           14 VFINFGGGDTRDNFTSHLVAALHDR--NVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKIL   90 (159)
Q Consensus        14 VFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~   90 (159)
                      |||||++.+.+++|+.+|...|+++  |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|.||+.|+..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333689999999999999  999999998 9999999999999999999999999999999999999999999


Q ss_pred             Hhhccc--CceeeeEEEeeCCcccc-cccCcchhHHHhhhcccCCC--hhHHHHHHHHHHH
Q 036681           91 ECKGKK--GQIVIPVFYEVDPSDVC-YQSGSFRDPFVMHEGQFQVH--PENVQKWRDGLTE  146 (159)
Q Consensus        91 ~~~~~~--~~~IiPV~~~v~p~~v~-~~~~~~~~~f~~~~~~~~~~--~~~~~~W~~al~~  146 (159)
                      ++....  ...|+|||+++.+.+++ .+.+.|+..|.........+  .+....|++++.+
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~~  141 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRYH  141 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhcC
Confidence            997553  48999999999999999 78999999998888876544  5788999998763

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.81  E-value=9.6e-21  Score=130.05  Aligned_cols=93  Identities=31%  Similarity=0.612  Sum_probs=77.6

Q ss_pred             EEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhh
Q 036681           14 VFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECK   93 (159)
Q Consensus        14 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~   93 (159)
                      |||||+++|  ..++..|...|++.|+++|+|..+.+|+++.++|.++|++|+.+|+++||+|.+|+||..|+..|.+  
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            899999999  3799999999999999999996699999999999999999999999999999999999999999954  


Q ss_pred             cccCceeeeEEEeeCCccccc
Q 036681           94 GKKGQIVIPVFYEVDPSDVCY  114 (159)
Q Consensus        94 ~~~~~~IiPV~~~v~p~~v~~  114 (159)
                        .+..||||.+  ++.+++.
T Consensus        77 --~~~~iipv~~--~~~~~p~   93 (102)
T PF13676_consen   77 --RGKPIIPVRL--DPCELPG   93 (102)
T ss_dssp             --TSESEEEEEC--SGGGS-G
T ss_pred             --CCCEEEEEEE--CCcCCCH
Confidence              3449999994  4555543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.23  E-value=3e-11  Score=102.17  Aligned_cols=90  Identities=23%  Similarity=0.433  Sum_probs=79.7

Q ss_pred             CeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCc--------CCh
Q 036681           10 CKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYA--------SSK   80 (159)
Q Consensus        10 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~--------~S~   80 (159)
                      +..||||||++.. ...+++.|.-.|+-+|++||+|-+ +..|.. .+.+.+.|..++.+|+|+||+..        .-+
T Consensus       611 kq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeD  688 (832)
T KOG3678|consen  611 KQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCED  688 (832)
T ss_pred             CCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHHH
Confidence            6799999998775 468999999999999999999998 988865 56899999999999999999975        358


Q ss_pred             hHHHHHHHHHHhhcccCceeeeEEE
Q 036681           81 WCLNELLKILECKGKKGQIVIPVFY  105 (159)
Q Consensus        81 wc~~El~~~~~~~~~~~~~IiPV~~  105 (159)
                      |...||..++++.+    .|||||-
T Consensus       689 WVHKEl~~Afe~~K----NIiPI~D  709 (832)
T KOG3678|consen  689 WVHKELKCAFEHQK----NIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHhcC----Ceeeeec
Confidence            99999999999877    9999993

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.86  E-value=5.6e-09  Score=74.90  Aligned_cols=89  Identities=25%  Similarity=0.427  Sum_probs=48.6

Q ss_pred             ecEEEeccCCccchhHHHHHHHHhhcC-------CceE-Ee---------eCc-ccCcccchHHHHHHHHhcceEEEEee
Q 036681           12 YDVFINFGGGDTRDNFTSHLVAALHDR-------NVKT-FI---------DEE-IRRGDEISTAISDAIEASKISVIIFS   73 (159)
Q Consensus        12 yDVFISy~~~D~~~~fv~~L~~~L~~~-------gi~v-~~---------d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S   73 (159)
                      |.|||||++.|. ...+..|...+...       .+.. +.         +.. ......+...|.++|.+|+++|++++
T Consensus         1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            579999999984 23777777777653       2211 11         111 22344788999999999999999999


Q ss_pred             cCCcCChhHHHHHHHHHHhhcccCceeeeEEE
Q 036681           74 EDYASSKWCLNELLKILECKGKKGQIVIPVFY  105 (159)
Q Consensus        74 ~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~~  105 (159)
                      ++...|.|+..|+..+++..    ..||.|.+
T Consensus        80 ~~T~~s~wV~~EI~~A~~~~----~~Ii~V~~  107 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKKG----KPIIGVYL  107 (130)
T ss_dssp             TT----HHHHHHHHHHTTT-------EEEEET
T ss_pred             CCcccCcHHHHHHHHHHHCC----CCEEEEEC
Confidence            99999999999999998743    47888764

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.23  E-value=1.2e-05  Score=58.62  Aligned_cols=64  Identities=16%  Similarity=0.308  Sum_probs=53.7

Q ss_pred             cEEEeccCCccc-hhHHHHHHHHhhcC-CceEEeeCc-cc--CcccchHHHHHHHHhcceEEEEeecCC
Q 036681           13 DVFINFGGGDTR-DNFTSHLVAALHDR-NVKTFIDEE-IR--RGDEISTAISDAIEASKISVIIFSEDY   76 (159)
Q Consensus        13 DVFISy~~~D~~-~~fv~~L~~~L~~~-gi~v~~d~~-~~--~G~~~~~~i~~ai~~S~~~I~v~S~~~   76 (159)
                      -|||||+..... ...|..|...|++. |+.|.+|.. ..  ++..+..=+.+.+++++.+|+|.||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999985542 46799999999999 999999998 63  377777778889999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.52  E-value=0.00042  Score=49.56  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             cEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCc-------------C
Q 036681           13 DVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYA-------------S   78 (159)
Q Consensus        13 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~-------------~   78 (159)
                      .|||.|+ +|  ...+..+...|+..|+.+..-.+ ...|..+.+.+.+.+.+++..|+++||+=.             .
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899998 55  37888999999988988776666 899999999999999999999999998521             1


Q ss_pred             ChhHHHHHHHHHHhhcccCceeeeEE
Q 036681           79 SKWCLNELLKILECKGKKGQIVIPVF  104 (159)
Q Consensus        79 S~wc~~El~~~~~~~~~~~~~IiPV~  104 (159)
                      -.....|+..++.+.  +..+++-+.
T Consensus        78 R~NVifE~G~f~g~L--Gr~rv~~l~  101 (125)
T PF10137_consen   78 RQNVIFELGLFIGKL--GRERVFILV  101 (125)
T ss_pred             ccceeehhhHHHhhc--CcceEEEEE
Confidence            234566888888653  223555444

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=96.05  E-value=0.033  Score=36.64  Aligned_cols=65  Identities=17%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             EEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCC
Q 036681           14 VFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASS   79 (159)
Q Consensus        14 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S   79 (159)
                      ||||-.-.|. +.--..|.+.|.+.|..+..-+. -..+..-.+.+.+.|++|++.|.++...|-..
T Consensus         2 VFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    2 VFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             EEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            8999888885 35557788888888877654443 23456666788999999999999999998653

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=94.96  E-value=0.35  Score=33.34  Aligned_cols=69  Identities=13%  Similarity=0.040  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHhhcCCceEEeeCc--cc---Ccc----cchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhhc
Q 036681           25 DNFTSHLVAALHDRNVKTFIDEE--IR---RGD----EISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECKG   94 (159)
Q Consensus        25 ~~fv~~L~~~L~~~gi~v~~d~~--~~---~G~----~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~~   94 (159)
                      ..+...+.+.|+.+|+.++...+  ..   .+.    .+...-.++|++|+++|+++.+.- .+.-+.-|+..|....+
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~algk   90 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALGK   90 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCCC
Confidence            57889999999999999988663  21   223    333444579999999999998755 67888999999987654

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=94.51  E-value=0.046  Score=43.65  Aligned_cols=99  Identities=14%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             CCeecEEEeccCCccchhHHHHHHHHhhc--CCceEEeeCc----ccCcccchHHHHHHHH-hcceEEEEeecCCcCChh
Q 036681            9 SCKYDVFINFGGGDTRDNFTSHLVAALHD--RNVKTFIDEE----IRRGDEISTAISDAIE-ASKISVIIFSEDYASSKW   81 (159)
Q Consensus         9 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~--~gi~v~~d~~----~~~G~~~~~~i~~ai~-~S~~~I~v~S~~~~~S~w   81 (159)
                      -+.||+=|||.++.  ..+|+....+++.  .-+..|+|-.    +.+| ++.+-+...-. .|++.++++..+|....|
T Consensus       175 ~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~-sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K~~  251 (329)
T COG4916         175 EKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPG-SLVSTLDPGYDIRCVVTTVFNTGSYICKST  251 (329)
T ss_pred             ccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCc-cHHHhcccccCceEEEEEEEeCCceEEeee
Confidence            37899999999987  4899999999984  3466788865    3333 33333333333 589999999999999999


Q ss_pred             HHHHHHHHHHhhcccCceeeeEEE-eeCCccc
Q 036681           82 CLNELLKILECKGKKGQIVIPVFY-EVDPSDV  112 (159)
Q Consensus        82 c~~El~~~~~~~~~~~~~IiPV~~-~v~p~~v  112 (159)
                      |.-|...+-.-.  .-..+.||.| +++...+
T Consensus       252 c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~  281 (329)
T COG4916         252 CHIEGLEGRLNP--ILDTGFRIKYLYADNIAI  281 (329)
T ss_pred             eccchhhccccc--cccccceEEEEecCCccc
Confidence            999887764321  2236777776 3444443

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=90.67  E-value=2.5  Score=28.38  Aligned_cols=63  Identities=8%  Similarity=0.000  Sum_probs=45.1

Q ss_pred             HHHHHHhhcCCceEEeeCcc--cCcccchHHH---HHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhh
Q 036681           29 SHLVAALHDRNVKTFIDEEI--RRGDEISTAI---SDAIEASKISVIIFSEDYASSKWCLNELLKILECK   93 (159)
Q Consensus        29 ~~L~~~L~~~gi~v~~d~~~--~~G~~~~~~i---~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~   93 (159)
                      ......|+..|+.|.-.-.+  ..|.++.+-+   ...|..|+.+++  =|++-+|.-|+-|...|.+..
T Consensus        19 ~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~--l~gWe~S~GA~~E~~~A~~lG   86 (92)
T PF14359_consen   19 NAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYM--LPGWENSRGARLEHELAKKLG   86 (92)
T ss_pred             HHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEE--cCCcccCcchHHHHHHHHHCC
Confidence            45778999999887654443  5666655433   355667885444  399999999999999997653

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=87.04  E-value=2.1  Score=33.15  Aligned_cols=86  Identities=16%  Similarity=0.202  Sum_probs=61.3

Q ss_pred             cEEEeccCCccchhHHHHHHHHhhc-CC-ceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCc--------C----
Q 036681           13 DVFINFGGGDTRDNFTSHLVAALHD-RN-VKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYA--------S----   78 (159)
Q Consensus        13 DVFISy~~~D~~~~fv~~L~~~L~~-~g-i~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~--------~----   78 (159)
                      -|||-|+++    ..+.....+|.+ .- ..+|.|.-...|+.+.+.+.+-|.+++..|++.+|+=.        .    
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p  159 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP  159 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence            799999764    366666666654 33 45677776889999999999999999999999999843        1    


Q ss_pred             --ChhHHHHHHHHHHhhcccCceeeeEE
Q 036681           79 --SKWCLNELLKILECKGKKGQIVIPVF  104 (159)
Q Consensus        79 --S~wc~~El~~~~~~~~~~~~~IiPV~  104 (159)
                        -.....||..++.+.  ++.+|+-+.
T Consensus       160 raRqNVifELGm~mgrL--gRkrv~Il~  185 (233)
T COG4271         160 RARQNVIFELGMFMGRL--GRKRVMILM  185 (233)
T ss_pred             cccccchhhHhhHHhhc--ccceEEEEe
Confidence              122456787777653  334555444

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=85.03  E-value=6.7  Score=24.36  Aligned_cols=60  Identities=20%  Similarity=0.194  Sum_probs=36.5

Q ss_pred             HHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCCh-hHHHHHHHHHHhhcccCceee
Q 036681           29 SHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSK-WCLNELLKILECKGKKGQIVI  101 (159)
Q Consensus        29 ~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~-wc~~El~~~~~~~~~~~~~Ii  101 (159)
                      ..++..|++.|+.+-....          ...++...+-++++++|.+.-+. --.++|...+   +.++..||
T Consensus         8 ~a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~~~~~~~l~~~v---~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSEPEEAEALLEWV---EAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCchHHHHHHHHHH---HcCCEEEE
Confidence            4577788888998843221          12344558889999999966654 3334444444   34454443

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=84.38  E-value=6.4  Score=25.20  Aligned_cols=60  Identities=10%  Similarity=0.204  Sum_probs=38.6

Q ss_pred             ecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecC
Q 036681           12 YDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSED   75 (159)
Q Consensus        12 yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~   75 (159)
                      ++|+|...+.+. ...+..+...|++.|+++-+|..   +..+...+..|-+.---.++++.++
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~~   61 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGDK   61 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECcc
Confidence            687777665543 46788999999999999988764   2344555555544333344455443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=80.67  E-value=9.6  Score=24.43  Aligned_cols=59  Identities=17%  Similarity=0.228  Sum_probs=38.8

Q ss_pred             ecEEEeccCC---ccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeec
Q 036681           12 YDVFINFGGG---DTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSE   74 (159)
Q Consensus        12 yDVFISy~~~---D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~   74 (159)
                      ++|+|-..+.   .. ...+..+...|+..|+.+-+|..   +..+...+..+-+.---.++++.+
T Consensus         2 ~~v~ii~~~~~~~~~-~~~a~~~~~~Lr~~g~~v~~~~~---~~~~~k~~~~a~~~g~~~~iiig~   63 (94)
T cd00738           2 IDVAIVPLTDPRVEA-REYAQKLLNALLANGIRVLYDDR---ERKIGKKFREADLRGVPFAVVVGE   63 (94)
T ss_pred             eEEEEEECCCCcHHH-HHHHHHHHHHHHHCCCEEEecCC---CcCHhHHHHHHHhCCCCEEEEECC
Confidence            5777765443   32 46788899999999999988663   345555555554443346666665

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		3e-27
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		3e-24
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		1e-04

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 6   SSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDE-EIRRGDEISTAISDAIEA 64
           S ++ KYDVF++F G DTR NF S L   L  R+++TF D+ E+  G   S  +   IE 
Sbjct: 3   SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEV 62
Query: 65  SKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFV 124
           S+ +V++ SE+YA+S WCL+EL+ I++ + K    V+P+FY V+P+ V +Q+G   + F 
Sbjct: 63  SRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFK 122
Query: 125 MHEGQFQVHPENVQKWRDGLTEASLIVG 152
            H    +  PE V KWR  LT  + + G
Sbjct: 123 KHAS--REDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 89/149 (59%), Gaps = 4/149 (2%)
Query: 6   SSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDE-EIRRGDEISTAISDAIEA 64
           S  S +Y+VF++F G DTR+ FT  L  +L    + TF D+ E+ +G EI   +  AI+ 
Sbjct: 30  SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQ 89
Query: 65  SKISVIIFSEDYASSKWCLNELLKILECKGKKG-QIVIPVFYEVDPSDVCYQSGSFRDPF 123
           SKI V I S  YA SKWCL EL +I+  + +   +I++P+FY VDPSDV +Q+G ++  F
Sbjct: 90  SKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAF 149
Query: 124 VMHEGQFQVHPENVQKWRDGLTEASLIVG 152
             H  +F    + +Q W+D L +   + G
Sbjct: 150 RKHANKFD--GQTIQNWKDALKKVGDLKG 176

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 7   SSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDE-EIRRGDEISTAISDAIEAS 65
           +S+  +D+FI+    D  D F   L   L     + + D+  +R GD +  +I   + +S
Sbjct: 16  TSAPPHDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSS 74
Query: 66  KISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRD 121
           +  +++ S  +   +W   EL  + + +      ++P++++V   +V   S +  D
Sbjct: 75  RFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	2e-78
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	2e-76
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	5e-65
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-17
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	1e-08
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	6e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  229 bits (586), Expect = 2e-78
 Identities = 60/151 (39%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 6   SSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFID-EEIRRGDEISTAISDAIEA 64
           S ++ KYDVF++F G DTR NF S L   L  R+++TF D +E+  G   S  +   IE 
Sbjct: 3   SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEV 62

Query: 65  SKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFV 124
           S+ +V++ SE+YA+S WCL+EL+ I++ + K    V+P+FY V+P+ V +Q+G   + F 
Sbjct: 63  SRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFK 122

Query: 125 MHEGQFQVHPENVQKWRDGLTEASLIVGLDS 155
            H  +    PE V KWR  LT  + + G  S
Sbjct: 123 KHASRE--DPEKVLKWRQALTNFAQLSGDCS 151

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  225 bits (575), Expect = 2e-76
 Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 4/159 (2%)

Query: 3   SALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFID-EEIRRGDEISTAISDA 61
            + S  S +Y+VF++F G DTR+ FT  L  +L    + TF D +E+ +G EI   +  A
Sbjct: 27  PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRA 86

Query: 62  IEASKISVIIFSEDYASSKWCLNELLKILECKGKKG-QIVIPVFYEVDPSDVCYQSGSFR 120
           I+ SKI V I S  YA SKWCL EL +I+  + +   +I++P+FY VDPSDV +Q+G ++
Sbjct: 87  IDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYK 146

Query: 121 DPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR 159
             F  H  +F    + +Q W+D L +   + G       
Sbjct: 147 KAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKND 183

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  194 bits (496), Expect = 5e-65
 Identities = 25/145 (17%), Positives = 62/145 (42%), Gaps = 4/145 (2%)

Query: 1   MGSALSSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDE-EIRRGDEISTAIS 59
             +A  +S+  +D+FI+    D + +F   L   L     + + D+  +R GD +  +I 
Sbjct: 10  TTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSID 68

Query: 60  DAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSF 119
             + +S+  +++ S  +   +W   EL  + + +      ++P++++V   +V   S + 
Sbjct: 69  KGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTM 128

Query: 120 RDPFVMHEGQFQVHPENVQKWRDGL 144
            D    +     V  + +      +
Sbjct: 129 ADKLAFNTSTKSV--DEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 73.6 bits (181), Expect = 1e-17
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 2   GSALSSSSCKYDVFINFGGGDTRDNFTSHLVAAL--HDRNVKTFIDE-EIRRGDEISTAI 58
           G   S  S  YDV +     D        LV+ L     +++ F+   +   G  I + +
Sbjct: 1   GPGSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSEL 58

Query: 59  SDAIEASKISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVFYEVDPSDV 112
             A+ +S   V++ +  +    WC  ++L+ L          IP+   +  +  
Sbjct: 59  CQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 11/107 (10%)

Query: 10  CKYDVFINFGGGDTRDNFTSHLVAAL--HDRNVKTFIDEE-IRRGDEISTAISDAIEASK 66
            ++  FI++   D      + L+  L   D ++   + E     G  IS  I   IE S 
Sbjct: 34  VRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSY 92

Query: 67  ISVIIFSEDYASSKWCLNELL----KILECKGKKGQIVIPVFYEVDP 109
            S+ + S ++  ++WC  E       +          +I +  E  P
Sbjct: 93  KSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDH---IILILLEPIP 136

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 7   SSSCKYDVFINFGGGDTRDNFTSHLVAAL--HDRNVKTFIDE-EIRRGDEISTAISDAIE 63
           S +  YD F+++   D      + +V  L   +   K  + + +   G  I   I D+IE
Sbjct: 1   SRNIXYDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIE 59

Query: 64  ASKISVIIFSEDYASSKWCLNELLKIL-ECKGKKGQIVIPVFYE 106
            S  +V + SE++  S+W   EL         +     I +  E
Sbjct: 60  KSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLE 103

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 34/117 (29%)

Query: 10  CKYDVFINFGGGDTRD-NF-TSHLVAAL--------------HDRNVKTFIDEEIRRGDE 53
            KYD ++ F    ++D  +  + L+  L               +R+   F+      G+ 
Sbjct: 669 YKYDAYLCF---SSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERD---FV-----PGEN 717

Query: 54  ISTAISDAIEASKISVIIFSEDYASSKWCLNELL----KILECKGKKGQIVIPVFYE 106
               I DAI  S+  V + S  +    WCL        + L         +I V   
Sbjct: 718 RIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLS---DLNSALIMVVVG 771

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 18/62 (29%)

Query: 83  LNELLKILECKGKKGQIVIPVFYEVDPSD---VCYQSGSFRDPFVMHEGQFQVHPENVQK 139
           LN +L   ECK    +IV         S+   VC   G      V+ +       E    
Sbjct: 18  LNIVLTCPECKVYPPKIV------ERFSEGDVVCALCG-----LVLSDKLVDTRSE---- 62

Query: 140 WR 141
           WR
Sbjct: 63  WR 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.92
2js7_A	160	Myeloid differentiation primary response protein M	99.92
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.44
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.49
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	95.87
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	93.68
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	91.48
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	89.76
1s2d_A	167	Purine trans deoxyribosylase; ribosylate intermedi	88.29

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=4.5e-52  Score=316.96  Aligned_cols=149  Identities=38%  Similarity=0.709  Sum_probs=141.6

Q ss_pred             CCeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHH
Q 036681            9 SCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELL   87 (159)
Q Consensus         9 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~   87 (159)
                      .++|||||||+++|+|..|+.+|+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|+|++|+.|.||++||.
T Consensus        33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~  112 (204)
T 3ozi_A           33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELA  112 (204)
T ss_dssp             -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHH
T ss_pred             CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHH
Confidence            389999999999999889999999999999999999988 9999999999999999999999999999999999999999


Q ss_pred             HHHHhhcc-cCceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHHhccccceeccCCC
Q 036681           88 KILECKGK-KGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSMDFR  159 (159)
Q Consensus        88 ~~~~~~~~-~~~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~~~~  159 (159)
                      .+++|.++ ++++||||||+|+|++||+|+|.||++|+++++++.  ++++++||.||++|++++||++.+++
T Consensus       113 ~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~  183 (204)
T 3ozi_A          113 EIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKND  183 (204)
T ss_dssp             HHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred             HHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCC
Confidence            99999764 578999999999999999999999999999999874  78999999999999999999998764

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=4.2e-52  Score=311.77  Aligned_cols=149  Identities=40%  Similarity=0.744  Sum_probs=127.6

Q ss_pred             CCCCCeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHH
Q 036681            6 SSSSCKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLN   84 (159)
Q Consensus         6 s~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~   84 (159)
                      ||..++|||||||+++|+|+.|+++|+.+|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|+|++|++|.||++
T Consensus         3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~   82 (176)
T 3jrn_A            3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD   82 (176)
T ss_dssp             ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred             CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence            445788999999999999889999999999999999999988 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHHhccccceecc
Q 036681           85 ELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEASLIVGLDSM  156 (159)
Q Consensus        85 El~~~~~~~~~~~~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~g~~~~  156 (159)
                      ||..+++|.+.++++||||||+|+|++|++|+|.||++|.+++++  .+.+++++||.||++|++++|+++.
T Consensus        83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            999999998888999999999999999999999999999999987  5689999999999999999999983

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=1.4e-36  Score=223.29  Aligned_cols=132  Identities=18%  Similarity=0.391  Sum_probs=120.7

Q ss_pred             CeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHH
Q 036681           10 CKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLK   88 (159)
Q Consensus        10 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~   88 (159)
                      ++|||||||+++| +..|+.+|+.+|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+|++|++|.||+.||..
T Consensus        19 ~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~   97 (154)
T 3h16_A           19 PPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDG   97 (154)
T ss_dssp             CSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHH
T ss_pred             CCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHH
Confidence            8899999999999 568999999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             HHHhhcccCceeeeEEEeeCCcccccccCcchhHHHhhhcccCCChhHHHHHHHHHHHh
Q 036681           89 ILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDPFVMHEGQFQVHPENVQKWRDGLTEA  147 (159)
Q Consensus        89 ~~~~~~~~~~~IiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~W~~al~~v  147 (159)
                      ++++...++.+||||||+++|++|++|.|.|+++|......     +.+.++-+.|.++
T Consensus        98 ~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~-----~~~~~ia~~l~~l  151 (154)
T 3h16_A           98 LFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST-----KSVDEIVADLMAI  151 (154)
T ss_dssp             HTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence            99987777789999999999999999999999999877554     4466666666654

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=1.7e-31  Score=194.95  Aligned_cols=138  Identities=19%  Similarity=0.272  Sum_probs=96.0

Q ss_pred             CCCCCCeecEEEeccCCccchhHHHHHHHHhhc--CCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChh
Q 036681            5 LSSSSCKYDVFINFGGGDTRDNFTSHLVAALHD--RNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKW   81 (159)
Q Consensus         5 ~s~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~--~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~w   81 (159)
                      |+...+.|||||||+++|+  .||.+|+.+|++  .|+++|++++ +.||+.+.++|.++|++|+.+|+|+|++|++|.|
T Consensus         4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w   81 (146)
T 3ub2_A            4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW   81 (146)
T ss_dssp             CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred             CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence            4445689999999999995  689999999998  5999999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccCceeeeEEEeeCCcccccccCcc-hhHHHhhhcccCCChhHHHHHHHHH
Q 036681           82 CLNELLKILECKGKKGQIVIPVFYEVDPSDVCYQSGSF-RDPFVMHEGQFQVHPENVQKWRDGL  144 (159)
Q Consensus        82 c~~El~~~~~~~~~~~~~IiPV~~~v~p~~v~~~~~~~-~~~f~~~~~~~~~~~~~~~~W~~al  144 (159)
                      |+.|+..|+.+...+..+||||++++++++++.....+ ...+......++.-.+.+.+|++||
T Consensus        82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence            99999999998633334788999999877776533221 1111122233333457788888775

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.92  E-value=9.6e-27  Score=170.11  Aligned_cols=103  Identities=22%  Similarity=0.371  Sum_probs=91.7

Q ss_pred             CCeecEEEeccCCccchhHHHH-HHHHhhcC--CceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHH
Q 036681            9 SCKYDVFINFGGGDTRDNFTSH-LVAALHDR--NVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLN   84 (159)
Q Consensus         9 ~~~yDVFISy~~~D~~~~fv~~-L~~~L~~~--gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~   84 (159)
                      .+.|||||||+++|.  .||.+ |...|++.  |+++|+|++ +.||+.+.++|.++|++|+++|+|+||+|++|.||+.
T Consensus         3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~   80 (149)
T 1fyx_A            3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKY   80 (149)
T ss_dssp             SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHH
T ss_pred             CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHH
Confidence            468999999999995  79986 99999986  999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-hcccCceeeeEEEe-eCCcccc
Q 036681           85 ELLKILEC-KGKKGQIVIPVFYE-VDPSDVC  113 (159)
Q Consensus        85 El~~~~~~-~~~~~~~IiPV~~~-v~p~~v~  113 (159)
                      |+..|+.+ .++++.+||||+|+ +++.+++
T Consensus        81 El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           81 ELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            99999865 34567799999984 5555554

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.92  E-value=3.7e-26  Score=168.87  Aligned_cols=102  Identities=23%  Similarity=0.388  Sum_probs=91.1

Q ss_pred             CCeecEEEeccCCccchhHHHHHHHHhhcC--CceEEeeCc-ccCcccchHHHHHHHH-hcceEEEEeecCCcCChhHHH
Q 036681            9 SCKYDVFINFGGGDTRDNFTSHLVAALHDR--NVKTFIDEE-IRRGDEISTAISDAIE-ASKISVIIFSEDYASSKWCLN   84 (159)
Q Consensus         9 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~-~~~G~~~~~~i~~ai~-~S~~~I~v~S~~~~~S~wc~~   84 (159)
                      .+.|||||||+++|  ..||.+|...|++.  |+++|++++ +.||+.+.++|.++|+ +|+.+|+|+||+|++|.||+.
T Consensus        14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~   91 (160)
T 2js7_A           14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF   91 (160)
T ss_dssp             TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred             CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence            47899999999999  58999999999984  699999998 9999999999999999 799999999999999999999


Q ss_pred             HHHHHHHhh-cccCceeeeEEEeeCCccc
Q 036681           85 ELLKILECK-GKKGQIVIPVFYEVDPSDV  112 (159)
Q Consensus        85 El~~~~~~~-~~~~~~IiPV~~~v~p~~v  112 (159)
                      |+..|+.+. .+++.+||||+|+.-+.++
T Consensus        92 El~~a~~~~~~~~~~~vIpV~~~~~~~~l  120 (160)
T 2js7_A           92 QTKFALSLSPGAHQKRLIPIKYKAMKKEF  120 (160)
T ss_dssp             HHHHHHHHCTTHHHHTEEEEESSCCCCCC
T ss_pred             HHHHHHHHHHccCCCEEEEEEEcccchhh
Confidence            999999875 4456799999997544333

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=5.3e-26  Score=170.73  Aligned_cols=105  Identities=19%  Similarity=0.360  Sum_probs=87.9

Q ss_pred             CCCeecEEEeccCCccchhHHHH-HHHHhhc--CCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHH
Q 036681            8 SSCKYDVFINFGGGDTRDNFTSH-LVAALHD--RNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCL   83 (159)
Q Consensus         8 ~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~--~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~   83 (159)
                      ..+.|||||||+++|.  .||.. |...|++  +|+++|++++ +.||+.+.++|.++|++|+.+|+|+||+|++|.||+
T Consensus        32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~  109 (178)
T 2j67_A           32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH  109 (178)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred             CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence            3478999999999994  79975 9999998  8999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-cccCceeeeEEEe-eCCccccc
Q 036681           84 NELLKILECK-GKKGQIVIPVFYE-VDPSDVCY  114 (159)
Q Consensus        84 ~El~~~~~~~-~~~~~~IiPV~~~-v~p~~v~~  114 (159)
                      .|+..|+.+. ++++.+||||+|+ +++.+++.
T Consensus       110 ~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~  142 (178)
T 2j67_A          110 YEFYFAHHNLFHENSDHIILILLEPIPFYCIPT  142 (178)
T ss_dssp             THHHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence            9999999754 4566799999985 44444443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.91  E-value=3.2e-25  Score=163.74  Aligned_cols=100  Identities=18%  Similarity=0.296  Sum_probs=88.6

Q ss_pred             CeecEEEeccCCcc---------chhHHHHHHH-Hhh-cCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCc
Q 036681           10 CKYDVFINFGGGDT---------RDNFTSHLVA-ALH-DRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYA   77 (159)
Q Consensus        10 ~~yDVFISy~~~D~---------~~~fv~~L~~-~L~-~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~   77 (159)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|++++ +.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999995         3678888665 699 79999999999 999999999999999999999999999997


Q ss_pred             -CChhHHHHHHHHHHhh-cccCceeeeEEEeeCC
Q 036681           78 -SSKWCLNELLKILECK-GKKGQIVIPVFYEVDP  109 (159)
Q Consensus        78 -~S~wc~~El~~~~~~~-~~~~~~IiPV~~~v~p  109 (159)
                       .|.||..|+..|+.+. .+++.+||||+++-.+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             9999999999999885 5567899999976433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=2.3e-19  Score=160.35  Aligned_cols=99  Identities=21%  Similarity=0.325  Sum_probs=89.3

Q ss_pred             CCeecEEEeccCCccchhHH-HHHHHHhhc-----CCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChh
Q 036681            9 SCKYDVFINFGGGDTRDNFT-SHLVAALHD-----RNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKW   81 (159)
Q Consensus         9 ~~~yDVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~w   81 (159)
                      .+.|||||||+++|.  .|| .+|...|+.     .|+++|++++ +.||+.+.++|.++|++|+.+|+|+|++|++|.|
T Consensus       668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~w  745 (844)
T 3j0a_A          668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGW  745 (844)
T ss_dssp             CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTS
T ss_pred             ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChH
Confidence            478999999999994  566 789999985     5899999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-cccCceeeeEEEeeCC
Q 036681           82 CLNELLKILECK-GKKGQIVIPVFYEVDP  109 (159)
Q Consensus        82 c~~El~~~~~~~-~~~~~~IiPV~~~v~p  109 (159)
                      |..|+..|+.+. ++++.+||||+|+.-|
T Consensus       746 c~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          746 CLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             TTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            999999999875 5667899999986433

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.44  E-value=1.8e-07  Score=64.63  Aligned_cols=72  Identities=10%  Similarity=0.035  Sum_probs=53.6

Q ss_pred             CeecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHH
Q 036681           10 CKYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKI   89 (159)
Q Consensus        10 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~   89 (159)
                      .+|.+||||+.+|.    ...|...|.+.|+..- |              ..|+.|+++|++.++...+|+||..|+..|
T Consensus         3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            46999999999983    3344444444455332 1              678999999999999999999999999998


Q ss_pred             HHhhcccCceeeeEE
Q 036681           90 LECKGKKGQIVIPVF  104 (159)
Q Consensus        90 ~~~~~~~~~~IiPV~  104 (159)
                      .+..+    .||-|.
T Consensus        64 ~~~gk----pIigV~   74 (111)
T 1eiw_A           64 RKSSK----PIITVR   74 (111)
T ss_dssp             TTTTC----CEEEEC
T ss_pred             HHcCC----CEEEEE
Confidence            75443    666664

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.49  E-value=0.00061  Score=50.60  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             cCCccchhHHHHHHHHhhcCCceEEeeCc-cc----C----cccchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHH
Q 036681           19 GGGDTRDNFTSHLVAALHDRNVKTFIDEE-IR----R----GDEISTAISDAIEASKISVIIFSEDYASSKWCLNELLKI   89 (159)
Q Consensus        19 ~~~D~~~~fv~~L~~~L~~~gi~v~~d~~-~~----~----G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~   89 (159)
                      ..+|.  .....|..--.+..+-.|.|.+ ..    -    -..|...|.+.|+.|+.+|+++|++...|.|...|++.|
T Consensus        27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            55663  5666666655555555566754 31    2    245778899999999999999999999999999999999


Q ss_pred             H-HhhcccCceeeeEEEe
Q 036681           90 L-ECKGKKGQIVIPVFYE  106 (159)
Q Consensus        90 ~-~~~~~~~~~IiPV~~~  106 (159)
                      + ++    +.+||-|..+
T Consensus       105 i~~~----~~PII~Vy~~  118 (189)
T 3hyn_A          105 IGTK----GLPVIVIYPD  118 (189)
T ss_dssp             TTTT----CCCEEEEETT
T ss_pred             HHhc----CCcEEEEECC
Confidence            8 43    3477777643

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=95.87  E-value=0.055  Score=39.19  Aligned_cols=70  Identities=11%  Similarity=0.042  Sum_probs=53.7

Q ss_pred             hhHHHHHHHHhhcCCceEEeeCc--ccCcccchHHHHHHHHhcceEEEEeec--CCcCChhHHHHHHHHHHhhc
Q 036681           25 DNFTSHLVAALHDRNVKTFIDEE--IRRGDEISTAISDAIEASKISVIIFSE--DYASSKWCLNELLKILECKG   94 (159)
Q Consensus        25 ~~fv~~L~~~L~~~gi~v~~d~~--~~~G~~~~~~i~~ai~~S~~~I~v~S~--~~~~S~wc~~El~~~~~~~~   94 (159)
                      ..+...+.+.|+++|+.++....  ...+..+...-.++|++|+++|++++|  .-..+.-+..|+..|....+
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK   99 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   99 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC
Confidence            37889999999999999987554  222233444447999999999999997  44556778899999987655

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=93.68  E-value=0.61  Score=33.50  Aligned_cols=84  Identities=12%  Similarity=0.075  Sum_probs=56.0

Q ss_pred             CCCCeecEEEeccCC--ccchhHHHHHHHHhhcCCceEEeeCcccC-----cc-------cchHHHHHHHHhcceEEEEe
Q 036681            7 SSSCKYDVFINFGGG--DTRDNFTSHLVAALHDRNVKTFIDEEIRR-----GD-------EISTAISDAIEASKISVIIF   72 (159)
Q Consensus         7 ~~~~~yDVFISy~~~--D~~~~fv~~L~~~L~~~gi~v~~d~~~~~-----G~-------~~~~~i~~ai~~S~~~I~v~   72 (159)
                      +.+++..|||+=.-.  .........+.+.|+++| .|+.+....|     |.       .+...-.+.|++|+++|+++
T Consensus         7 ~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~   85 (165)
T 2khz_A            7 GEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEV   85 (165)
T ss_dssp             SSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred             CCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEEC
Confidence            344456799984322  111225588999999999 8865443222     21       12233358999999999999


Q ss_pred             ecCCcCChhHHHHHHHHHHhhc
Q 036681           73 SEDYASSKWCLNELLKILECKG   94 (159)
Q Consensus        73 S~~~~~S~wc~~El~~~~~~~~   94 (159)
                      +   ..+.-+..|+..|....+
T Consensus        86 ~---~~d~Gt~~EiGyA~algK  104 (165)
T 2khz_A           86 T---QPSLGVGYELGRAVALGK  104 (165)
T ss_dssp             S---SCCHHHHHHHHHHHHTCS
T ss_pred             C---CCCCCHHHHHHHHHHCCC
Confidence            7   567889999999987654

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=91.48  E-value=1.6  Score=31.21  Aligned_cols=77  Identities=17%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             cEEEec--cCCccchhHHHHHHHHhhcCCceEEeeCccc------Ccc-------cchHHHHHHHHhcceEEEEeecCCc
Q 036681           13 DVFINF--GGGDTRDNFTSHLVAALHDRNVKTFIDEEIR------RGD-------EISTAISDAIEASKISVIIFSEDYA   77 (159)
Q Consensus        13 DVFISy--~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~------~G~-------~~~~~i~~ai~~S~~~I~v~S~~~~   77 (159)
                      -|||+=  .+.+...++...+.+.|++.| .|+- ..+.      .|+       .+.+.-.++|+.|+++|++++   .
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~-~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~   78 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLT-EHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---Q   78 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECC-CC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---S
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccc-cccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---C
Confidence            366652  332223478899999999999 6754 2221      122       245566789999999999998   6


Q ss_pred             CChhHHHHHHHHHHhhc
Q 036681           78 SSKWCLNELLKILECKG   94 (159)
Q Consensus        78 ~S~wc~~El~~~~~~~~   94 (159)
                      .|.-...|+..|....+
T Consensus        79 ~d~Gt~~EiG~A~algk   95 (152)
T 4fyk_A           79 PSLGVGYELGRAVALGK   95 (152)
T ss_dssp             CCHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHcCC
Confidence            68889999999987654

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=89.76  E-value=2.8  Score=30.12  Aligned_cols=75  Identities=13%  Similarity=0.160  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHhhcC--CceEEeeCc-cc----Cccc----chHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHhh
Q 036681           25 DNFTSHLVAALHDR--NVKTFIDEE-IR----RGDE----ISTAISDAIEASKISVIIFSEDYASSKWCLNELLKILECK   93 (159)
Q Consensus        25 ~~fv~~L~~~L~~~--gi~v~~d~~-~~----~G~~----~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~El~~~~~~~   93 (159)
                      ..+...+.+.|+.+  |+.+|...+ -.    ++..    +...-.++|++|+++|.++. ....+..+..|+..|....
T Consensus        19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g   97 (162)
T 3ehd_A           19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG   97 (162)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence            46778899999865  899988654 21    2223    33444578999999999995 4456788999999998765


Q ss_pred             cccCceeeeEE
Q 036681           94 GKKGQIVIPVF  104 (159)
Q Consensus        94 ~~~~~~IiPV~  104 (159)
                      +    .|+.+.
T Consensus        98 k----PVi~~~  104 (162)
T 3ehd_A           98 I----PVVALY  104 (162)
T ss_dssp             C----CEEEEC
T ss_pred             C----EEEEEE
Confidence            4    555543

>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*

Probab=88.29  E-value=3.5  Score=29.68  Aligned_cols=80  Identities=9%  Similarity=0.072  Sum_probs=55.2

Q ss_pred             cEEEecc--CCccchhHHHHHHHHhhcC--CceEEeeCc--c--------cCc--------ccchHHHHHHHHhcceEEE
Q 036681           13 DVFINFG--GGDTRDNFTSHLVAALHDR--NVKTFIDEE--I--------RRG--------DEISTAISDAIEASKISVI   70 (159)
Q Consensus        13 DVFISy~--~~D~~~~fv~~L~~~L~~~--gi~v~~d~~--~--------~~G--------~~~~~~i~~ai~~S~~~I~   70 (159)
                      .|||.=.  +.+. .....++.+.|+++  |+.+|...+  .        ..|        ..+.+.-.++|++|+++|+
T Consensus         9 kIYLAGP~F~~~~-~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA   87 (167)
T 1s2d_A            9 KIYLGSPFYSDAQ-RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVF   87 (167)
T ss_dssp             EEEEECCCSSHHH-HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             EEEEECCCCCHHH-HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            4777521  2222 46889999999999  888887544  2        111        1233445578999999999


Q ss_pred             EeecCCcCChhHHHHHHHHHHhhc
Q 036681           71 IFSEDYASSKWCLNELLKILECKG   94 (159)
Q Consensus        71 v~S~~~~~S~wc~~El~~~~~~~~   94 (159)
                      ++.+.- .+.-+..|+..|....+
T Consensus        88 ~ldg~~-~D~GTa~EiGyA~algK  110 (167)
T 1s2d_A           88 LYDMDQ-LDDGSAFXIGFMRAMHK  110 (167)
T ss_dssp             EEESSS-CCHHHHHHHHHHHHTTC
T ss_pred             ECCCCC-CCCCceeehhhHhhCCC
Confidence            998644 46788899999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	4e-19
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-18

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 4e-19
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 3/118 (2%)

Query: 11  KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDE-EIRRGDEISTAISDAIEASKISV 69
           ++  FI++ G D+     + L+  L    ++  + E     G  I   I   IE S  S+
Sbjct: 12  QFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 70  IIFSEDYASSKWCLNELLKILECKGKKGQIV-IPVFYEVDPSDVCYQSGSFRDPFVMH 126
            + S ++  S+WC  EL         +G    I +  E  P      S       +  
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMAR 128

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 2e-18
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 7   SSSCKYDVFINFGGGDTRDNFTSHLVAAL--HDRNVKTFIDE-EIRRGDEISTAISDAIE 63
           S +  YD F+++   D      + +V  L   +   K  + + +   G  I   I D+IE
Sbjct: 1   SRNICYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIE 59

Query: 64  ASKISVIIFSEDYASSKWCLNEL-LKILECKGKKGQIVIPVFYEVDPSDVCYQSGSFRDP 122
            S  +V + SE++  S+WC  EL         +     I +  E        Q       
Sbjct: 60  KSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRK 119

Query: 123 FVMH 126
            +  
Sbjct: 120 IMNT 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.9
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.9
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	95.8
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	93.12
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	89.58
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	88.5
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	82.82
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	82.52

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.9e-25  Score=160.61  Aligned_cols=97  Identities=23%  Similarity=0.441  Sum_probs=88.7

Q ss_pred             CCCeecEEEeccCCccchhHH-HHHHHHhhcCCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhHHHH
Q 036681            8 SSCKYDVFINFGGGDTRDNFT-SHLVAALHDRNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWCLNE   85 (159)
Q Consensus         8 ~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc~~E   85 (159)
                      ..++|||||||+++|.  .|| ..|...|+++|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+||+|+.|.||..|
T Consensus         9 ~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E   86 (161)
T d1fyva_           9 RNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYE   86 (161)
T ss_dssp             SCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHH
T ss_pred             CCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHH
Confidence            4589999999999993  566 6799999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHhh-cccCceeeeEEEe
Q 036681           86 LLKILECK-GKKGQIVIPVFYE  106 (159)
Q Consensus        86 l~~~~~~~-~~~~~~IiPV~~~  106 (159)
                      +..|+.+. +.+..++|||+++
T Consensus        87 ~~~a~~~~~~~~~~~lIpV~l~  108 (161)
T d1fyva_          87 LYFAHHNLFHEGSNSLILILLE  108 (161)
T ss_dssp             HHTTSCCCSCSSCSSEEEEESS
T ss_pred             HHHHHHHHHHcCCCceeEEEEe
Confidence            99999775 4566799999975

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.2e-25  Score=159.45  Aligned_cols=105  Identities=24%  Similarity=0.398  Sum_probs=90.8

Q ss_pred             CCCCeecEEEeccCCccchhHH-HHHHHHhhc--CCceEEeeCc-ccCcccchHHHHHHHHhcceEEEEeecCCcCChhH
Q 036681            7 SSSCKYDVFINFGGGDTRDNFT-SHLVAALHD--RNVKTFIDEE-IRRGDEISTAISDAIEASKISVIIFSEDYASSKWC   82 (159)
Q Consensus         7 ~~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~--~gi~v~~d~~-~~~G~~~~~~i~~ai~~S~~~I~v~S~~~~~S~wc   82 (159)
                      |+++.|||||||+++|  +.|| ..|...|++  .|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+||+|++|.||
T Consensus         1 ~~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            4678999999999999  3566 568999976  4999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-cccCceeeeEEEe-eCCcccc
Q 036681           83 LNELLKILECK-GKKGQIVIPVFYE-VDPSDVC  113 (159)
Q Consensus        83 ~~El~~~~~~~-~~~~~~IiPV~~~-v~p~~v~  113 (159)
                      ..|+..|+.+. ++++.+||||+++ +++.+++
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~~  111 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCchhhcc
Confidence            99999988664 4567799999985 4444444

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.80  E-value=0.028  Score=38.65  Aligned_cols=71  Identities=11%  Similarity=0.037  Sum_probs=56.2

Q ss_pred             chhHHHHHHHHhhcCCceEEeeCc--ccCcccchHHHHHHHHhcceEEEEeec--CCcCChhHHHHHHHHHHhhc
Q 036681           24 RDNFTSHLVAALHDRNVKTFIDEE--IRRGDEISTAISDAIEASKISVIIFSE--DYASSKWCLNELLKILECKG   94 (159)
Q Consensus        24 ~~~fv~~L~~~L~~~gi~v~~d~~--~~~G~~~~~~i~~ai~~S~~~I~v~S~--~~~~S~wc~~El~~~~~~~~   94 (159)
                      +..+...+...|+.+|+.++...+  ......+...-.++|++|+++|++++|  .-..+.-+..|+..|....+
T Consensus        17 ~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algK   91 (152)
T d2f62a1          17 GASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   91 (152)
T ss_dssp             THHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCC
Confidence            357889999999999999997544  333445666777899999999999985  34456789999999998764

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.12  E-value=0.18  Score=31.28  Aligned_cols=60  Identities=18%  Similarity=0.212  Sum_probs=44.7

Q ss_pred             eecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEeec
Q 036681           11 KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFSE   74 (159)
Q Consensus        11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S~   74 (159)
                      ..+|||..-+++. ...+..|...|+.+|+++-+|..   +..+...+..|-..---.++++.+
T Consensus         3 ~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           3 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCcHHHHHHHHHhcCCCeEEecCC
Confidence            4689999988875 57899999999999999998763   445666677666644445555554

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.58  E-value=2  Score=28.96  Aligned_cols=89  Identities=12%  Similarity=0.043  Sum_probs=56.8

Q ss_pred             eecEEEeccCC-ccchhHHHHHHHHhhcCC--ceEEeeCc--c---c---------Ccc----cchHHHHHHHHhcceEE
Q 036681           11 KYDVFINFGGG-DTRDNFTSHLVAALHDRN--VKTFIDEE--I---R---------RGD----EISTAISDAIEASKISV   69 (159)
Q Consensus        11 ~yDVFISy~~~-D~~~~fv~~L~~~L~~~g--i~v~~d~~--~---~---------~G~----~~~~~i~~ai~~S~~~I   69 (159)
                      +..|||+=.-- +....++..+.+.|+++|  +.+|...+  .   .         ...    .+...=.++|++|+++|
T Consensus         7 ~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~vI   86 (167)
T d1s2da_           7 TGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             CEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEE
Confidence            45677763111 122467889999999988  56664221  1   0         001    12233457899999999


Q ss_pred             EEeecCCcCChhHHHHHHHHHHhhcccCceeeeEE
Q 036681           70 IIFSEDYASSKWCLNELLKILECKGKKGQIVIPVF  104 (159)
Q Consensus        70 ~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~  104 (159)
                      +++..... +.-+..|+..|....+    .||-+-
T Consensus        87 A~ldg~~~-D~GTa~EiG~A~a~gK----Pvi~~~  116 (167)
T d1s2da_          87 FLYDMDQL-DDGSAFEIGFMRAMHK----PVILVP  116 (167)
T ss_dssp             EEEESSSC-CHHHHHHHHHHHHTTC----CEEEEE
T ss_pred             EEeCCCCC-CccHHHHHHHHHHCCC----eEEEEe
Confidence            99987654 4578889999998765    665554

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=88.50  E-value=1  Score=30.38  Aligned_cols=87  Identities=16%  Similarity=0.157  Sum_probs=56.1

Q ss_pred             eecEEEe---ccCCccchhHHHHHHHHhhcC----CceEEeeCc-----ccCc--------cc----chHHHHHHHHhcc
Q 036681           11 KYDVFIN---FGGGDTRDNFTSHLVAALHDR----NVKTFIDEE-----IRRG--------DE----ISTAISDAIEASK   66 (159)
Q Consensus        11 ~yDVFIS---y~~~D~~~~fv~~L~~~L~~~----gi~v~~d~~-----~~~G--------~~----~~~~i~~ai~~S~   66 (159)
                      +..|||.   |+..+  ..+...+.+.|+++    |+.+|...+     ...+        ..    +...=.++|++|+
T Consensus         2 ~k~IYlAgP~F~~~q--~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD   79 (156)
T d1f8ya_           2 KKTIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND   79 (156)
T ss_dssp             CBCEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSS
T ss_pred             CceEEEECCCCCHHH--HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCC
Confidence            3556765   33333  47788999999874    566665322     1111        11    3333468899999


Q ss_pred             eEEEEeecCCcCChhHHHHHHHHHHhhcccCceeeeEE
Q 036681           67 ISVIIFSEDYASSKWCLNELLKILECKGKKGQIVIPVF  104 (159)
Q Consensus        67 ~~I~v~S~~~~~S~wc~~El~~~~~~~~~~~~~IiPV~  104 (159)
                      ++|+++.... ...-+..|+..|....+    .||-+.
T Consensus        80 ~via~ldg~~-~D~Gta~EiG~A~a~gK----pvi~~~  112 (156)
T d1f8ya_          80 IMLGVYIPDE-EDVGLGMELGYALSQGK----YVLLVI  112 (156)
T ss_dssp             EEEEECCGGG-CCHHHHHHHHHHHHTTC----EEEEEE
T ss_pred             EEEEEeCCCC-CCCCHHHHHHHHHHcCC----cEEEEe
Confidence            9999998653 45678889999998765    555544

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.82  E-value=1.2  Score=27.31  Aligned_cols=59  Identities=19%  Similarity=0.310  Sum_probs=41.3

Q ss_pred             eecEEEeccCCccchhHHHHHHHHhhcC--CceEEeeCcccCcccchHHHHHHHHhcceEEEEee
Q 036681           11 KYDVFINFGGGDTRDNFTSHLVAALHDR--NVKTFIDEEIRRGDEISTAISDAIEASKISVIIFS   73 (159)
Q Consensus        11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S   73 (159)
                      ..||||..-+++. ...+..|...|+++  |+++-+|..   +..+...+..|-+.---.++|+.
T Consensus         3 ~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~~---~~~l~kq~k~A~~~~~~~~iiiG   63 (99)
T d1kmma1           3 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVLG   63 (99)
T ss_dssp             SCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEECC
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeCC---CCCHHHHHHHHHHhCCChhhhcC
Confidence            4799998877765 57888999999876  999988753   34566667766664333445543

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.52  E-value=1  Score=27.31  Aligned_cols=59  Identities=20%  Similarity=0.264  Sum_probs=41.9

Q ss_pred             eecEEEeccCCccchhHHHHHHHHhhcCCceEEeeCcccCcccchHHHHHHHHhcceEEEEee
Q 036681           11 KYDVFINFGGGDTRDNFTSHLVAALHDRNVKTFIDEEIRRGDEISTAISDAIEASKISVIIFS   73 (159)
Q Consensus        11 ~yDVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~ai~~S~~~I~v~S   73 (159)
                      ..||||.--+++. ...+..|...|+.+|+++-+|..   +..+...+..|=+.---.++|+.
T Consensus         4 ~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG   62 (95)
T d1qe0a1           4 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVIG   62 (95)
T ss_dssp             CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC---CCCHHHHHHHHHhcCCCEEEEEc
Confidence            4789998766553 57889999999999999988753   34566666666664444555554