Citrus Sinensis ID: 036869

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
KESDSRKDRKSELKAFDDSKTSVKGIVDFAADRIPQIFIHELPKLSDKSHSSDLYKSVFHVIDFQGIDKDESLRCHVIDKVRDSCQKWGFFSGNVDSLRRLHEKDEELKQEFYSRDETRSVTYNSNFDLYQAPAANWRDSL
ccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHccccccccEEEccccccccccccccccc
ccccccccHHHHHHHHHHcHcccHcHHHccccccccEEEccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccHEEEccccHHHccccHHHHHHHccccccccEEEEccccccccccccHHccc
kesdsrkdRKSElkafddsktsVKGIVDFaadripqifihelpklsdkshssdlyKSVFHVidfqgidkdeslrcHVIDKVRDScqkwgffsgnvdsLRRLHEKDEELKQEfysrdetrsvtynsnfdlyqapaanwrdsl
kesdsrkdrkselkafddsktsvkGIVDFAADRIPQIFIHElpklsdksHSSDLYKSVFHVIDFQGIDKDESLRCHVIDKVRdscqkwgffsgnvdslrrlHEKDEELkqefysrdetrsvtynsnfdlyqapaanwrdsl
KESDSRKDRKSELKAFDDSKTSVKGIVDFAADRIPQIFIHELPKLSDKSHSSDLYKSVFHVIDFQGIDKDESLRCHVIDKVRDSCQKWGFFSGNVDSLRRLHEKDEELKQEFYSRDETRSVTYNSNFDLYQAPAANWRDSL
**********************VKGIVDFAADRIPQIFIHELPKL******SDLYKSVFHVIDFQGIDKDESLRCHVIDKVRDSCQKWGFFSGNVDSLR***********************YNSNFDLY***********
******K***SELKAFDDSKTSVKGIVDFAADRIPQIFIHELPKLSD*SHSSDLYKSVFHVIDFQGIDKDESLRCHVIDKVRDSCQKWGFFSGNVDSLRRLHEKDEELKQEFY*RD*T**VTYNSNFDLYQAPAANWRDSL
***************FDDSKTSVKGIVDFAADRIPQIFIHELPKLSDKSHSSDLYKSVFHVIDFQGIDKDESLRCHVIDKVRDSCQKWGFFSGNVDSLRRLHEKDEELKQEFYSRDETRSVTYNSNFDLYQAPAANWRDSL
*****RKDRKSELKAFDDSKTSVKGIVDFAADRIPQIFIHELPKLSDKSHSSDLYKSVFHVIDFQGIDKDESLRCHVIDKVRDSCQKWGFFSGNVDSLRRLHEKDEELKQEFYSRDETRSVTYNSNFDLYQAPAAN*****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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KESDSRKDRKSELKAFDDSKTSVKGIVDFAADRIPQIFIHELPKLSDKSHSSDLYKSVFHVIDFQGIDKDESLRCHVIDKVRDSCQKWGFFSGNVDSLRRLHEKDEELKQEFYSRDETRSVTYNSNFDLYQAPAANWRDSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query141 2.2.26 [Sep-21-2011]
P10967 363 1-aminocyclopropane-1-car N/A no 0.921 0.358 0.425 2e-26
Q84MB3 365 1-aminocyclopropane-1-car no no 0.936 0.361 0.408 1e-24
Q9SKK4 359 Probable 2-oxoacid depend no no 0.936 0.367 0.369 3e-24
Q8H1S4 369 1-aminocyclopropane-1-car no no 0.971 0.371 0.414 4e-24
Q9C5K7 369 1-aminocyclopropane-1-car no no 0.950 0.363 0.402 1e-21
Q9LTH7 366 1-aminocyclopropane-1-car no no 0.950 0.366 0.391 3e-21
Q43383 398 1-aminocyclopropane-1-car no no 0.943 0.334 0.402 3e-20
P93824 360 1-aminocyclopropane-1-car no no 0.929 0.363 0.387 3e-20
O04847 401 Deacetoxyvindoline 4-hydr N/A no 0.950 0.334 0.339 4e-19
Q9M2C4 370 1-aminocyclopropane-1-car no no 0.943 0.359 0.337 8e-19
>sp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1 Back     alignment and function desciption
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 18/148 (12%)

Query: 8   DRKSELKAFDDSKTSVKGIVDFAADRIPQIFIHELPKLSDKSHSSDLYKSVFHVIDFQGI 67
           D+ SELKAFDD+K  VKG+VD    ++PQIF+  LP   D++   + +  VF VID QGI
Sbjct: 11  DKMSELKAFDDTKAGVKGLVDSGITKVPQIFV--LPP-KDRAKKCETH-FVFPVIDLQGI 66

Query: 68  DKDESLRCHVIDKVRDSCQKWGFFSG------------NVDSLRRLHEKDEELKQEFYSR 115
           D+D      ++DKVRD+ +KWGFF               +   R+  E+D E+K+++Y+R
Sbjct: 67  DEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTR 126

Query: 116 DETRSVTYNSNFDLYQA--PAANWRDSL 141
           D  + V Y SN DLY++  PAA+WRD++
Sbjct: 127 DTAKKVVYTSNLDLYKSSVPAASWRDTI 154

Solanum lycopersicum (taxid: 4081)
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKK4|GSL_ARATH Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|Q9M2C4|ACCH8_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 8 OS=Arabidopsis thaliana GN=At3g61400 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query141
255576826 652 Desacetoxyvindoline 4-hydroxylase, putat 0.971 0.210 0.513 9e-36
255576828 364 Desacetoxyvindoline 4-hydroxylase, putat 0.943 0.365 0.493 2e-33
359477771 680 PREDICTED: 1-aminocyclopropane-1-carboxy 0.957 0.198 0.48 1e-31
224117868 368 predicted protein [Populus trichocarpa] 0.957 0.366 0.466 2e-31
147822811 373 hypothetical protein VITISV_042886 [Viti 0.950 0.359 0.479 4e-31
359497517 368 PREDICTED: 1-aminocyclopropane-1-carboxy 0.964 0.369 0.463 9e-31
225433035 373 PREDICTED: 1-aminocyclopropane-1-carboxy 0.950 0.359 0.479 1e-30
296083607 359 unnamed protein product [Vitis vinifera] 0.964 0.378 0.456 2e-30
147845654 373 hypothetical protein VITISV_017626 [Viti 0.950 0.359 0.479 2e-30
359477763 684 PREDICTED: 1-aminocyclopropane-1-carboxy 0.950 0.195 0.479 2e-30
>gi|255576826|ref|XP_002529299.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223531223|gb|EEF33068.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 103/152 (67%), Gaps = 15/152 (9%)

Query: 2   ESDSRKDRKSELKAFDDSKTSVKGIVDFAADRIPQIFIHELPKLSDKSHSSDLYKSVFHV 61
           ES+ + DRKSELK FDD+K  VKG+VD    +IP+IFIH+  K++D     +  K    +
Sbjct: 9   ESEIKYDRKSELKIFDDTKAGVKGLVDAGVTKIPRIFIHD--KITDTPFEGN-DKHTIPI 65

Query: 62  IDFQGIDKDESLRCHVIDKVRDSCQKWGFFS------------GNVDSLRRLHEKDEELK 109
           ID +GIDKD SLR  VIDK+R++C+KWGFF               +D +RR HE++ E+K
Sbjct: 66  IDLKGIDKDPSLRREVIDKLREACEKWGFFQLINHGIPATVMDEMIDGMRRFHEQETEVK 125

Query: 110 QEFYSRDETRSVTYNSNFDLYQAPAANWRDSL 141
           + F++RDETR V YN+NFD YQA AANWRDSL
Sbjct: 126 KHFFTRDETRKVIYNTNFDFYQAKAANWRDSL 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576828|ref|XP_002529300.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223531224|gb|EEF33069.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359477771|ref|XP_003632020.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224117868|ref|XP_002317688.1| predicted protein [Populus trichocarpa] gi|222860753|gb|EEE98300.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147822811|emb|CAN66006.1| hypothetical protein VITISV_042886 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359497517|ref|XP_003635549.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433035|ref|XP_002284663.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083607|emb|CBI23596.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845654|emb|CAN80594.1| hypothetical protein VITISV_017626 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477763|ref|XP_002284676.2| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query141
TAIR|locus:2824199 366 AT1G06645 [Arabidopsis thalian 0.950 0.366 0.442 3.2e-26
TAIR|locus:2009175 369 AT1G06650 [Arabidopsis thalian 0.943 0.360 0.425 2e-24
TAIR|locus:2052796 362 AT2G30840 [Arabidopsis thalian 0.950 0.370 0.412 1.4e-23
TAIR|locus:2009130 365 AT1G06620 [Arabidopsis thalian 0.936 0.361 0.414 3.8e-23
TAIR|locus:2040045 359 AT2G25450 [Arabidopsis thalian 0.936 0.367 0.376 2.1e-22
TAIR|locus:2148303 366 AT5G59540 [Arabidopsis thalian 0.914 0.352 0.398 3.4e-22
TAIR|locus:2009210 369 AT1G06640 [Arabidopsis thalian 0.943 0.360 0.412 5.5e-22
TAIR|locus:2052781 358 AT2G30830 [Arabidopsis thalian 0.936 0.368 0.424 1.5e-21
TAIR|locus:2018349 360 AT1G04350 [Arabidopsis thalian 0.921 0.361 0.397 3.9e-21
TAIR|locus:2020798 398 2A6 [Arabidopsis thaliana (tax 0.943 0.334 0.402 2.7e-20
TAIR|locus:2824199 AT1G06645 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 66/149 (44%), Positives = 94/149 (63%)

Query:     8 DRKSELKAFDDSKTSVKGIVDFAADRIPQIFIHELPKLSDKSH-SSDL-YKSVFHVIDFQ 65
             DR SELKAFD++KT VKG+VD    +IP+IF H   KL++    SSDL +      ID  
Sbjct:    11 DRASELKAFDETKTGVKGLVDSGISQIPRIFHHSSVKLANPEPVSSDLLHLKTIPTIDLG 70

Query:    66 G-IDKDESLRCHVIDKVRDSCQKWGFF---SGNV---------DSLRRLHEKDEELKQEF 112
             G + +DE    + I+K++++ +KWGFF   +  V         D +R  HE+  E++++F
Sbjct:    71 GRVFEDELKHKNAIEKIKEAAEKWGFFQVINHGVSLELLEKMKDGVRGFHEQSPEVRKDF 130

Query:   113 YSRDETRSVTYNSNFDLYQAPAANWRDSL 141
             YSRD TR   Y+SNFDLY +PAANWRD++
Sbjct:   131 YSRDLTRKFQYSSNFDLYSSPAANWRDTV 159
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040045 AT2G25450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009210 AT1G06640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020798 2A6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020209001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (377 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query141
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 1e-04
PLN02758 361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 0.002
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information 
 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 15/93 (16%)

Query: 61  VIDFQGIDKDESLRCHVIDKVRDSCQKWGFF--------SGNVDSL----RRLHEKDEEL 108
           VID  G  +D   R  V  ++ ++C++WGFF           +D L    R       E 
Sbjct: 3   VIDLSGDPED---RAAVAAELGEACREWGFFQLVNHGIPEELIDRLFEAAREFFALPLEE 59

Query: 109 KQEFYSRDETRSVTYNSNFDLYQAPAANWRDSL 141
           K ++      R                +W++S 
Sbjct: 60  KLKYARSGGNRGYGSLGAEKTDGKKVLDWKESF 92

This is the highly conserved N-terminal region of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase activity. Length = 113
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 141
PLN02904 357 oxidoreductase 99.89
PLN02947 374 oxidoreductase 99.88
PLN02758 361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.88
PLN02216 357 protein SRG1 99.87
PLN02393 362 leucoanthocyanidin dioxygenase like protein 99.86
PLN03178 360 leucoanthocyanidin dioxygenase; Provisional 99.85
PLN03176120 flavanone-3-hydroxylase; Provisional 99.82
PLN02276 361 gibberellin 20-oxidase 99.82
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 99.82
PLN02912 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.81
PLN02639 337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.8
PLN02704 335 flavonol synthase 99.8
PLN00417 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.8
PLN02254 358 gibberellin 3-beta-dioxygenase 99.78
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.78
PLN02750 345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.74
KOG0143 322 consensus Iron/ascorbate family oxidoreductases [S 99.72
PTZ00273 320 oxidase reductase; Provisional 99.68
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 99.67
PLN02485 329 oxidoreductase 99.65
PLN02997 325 flavonol synthase 99.54
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 99.53
PLN03002 332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.52
PLN02156 335 gibberellin 2-beta-dioxygenase 99.43
PLN02403 303 aminocyclopropanecarboxylate oxidase 99.42
PLN02984 341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.41
PLN02365 300 2-oxoglutarate-dependent dioxygenase 99.4
PLN03001 262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 97.76
>PLN02904 oxidoreductase Back     alignment and domain information 
Probab=99.89  E-value=2.1e-23  Score=170.65  Aligned_cols=124  Identities=23%  Similarity=0.353  Sum_probs=96.7

Q ss_pred             hcccccccHHHHHHccCCCCCCccccCCCCCCCCCCCCCCCCC-ccceeecCCCCCChhHHHHHHHHHHHHHHhhcHHH-
Q 036869           15 AFDDSKTSVKGIVDFAADRIPQIFIHELPKLSDKSHSSDLYKS-VFHVIDFQGIDKDESLRCHVIDKVRDSCQKWGFFS-   92 (141)
Q Consensus        15 ~~~~~~~~v~~l~~~~~~~vP~~yv~p~~~~p~~~~~~~~~~~-~iPvIDls~l~~~~~~r~~~~~~l~~Ac~~~GFF~-   92 (141)
                      .|+++..||++|+++|..+||+.|++|++++| .......... .||||||+.+.+ +..|.+++++|++||++||||| 
T Consensus         8 ~~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p-~~~~~~~~~~~~iPvIDls~~~~-~~~r~~~~~~l~~Ac~~~GFf~v   85 (357)
T PLN02904          8 VLDDSFTSAMTLTNSGVPHVPDRYVLPPSQRP-MLGSSIGTSTITLPVIDLSLLHD-PLLRSCVIHEIEMACKGFGFFQV   85 (357)
T ss_pred             hhhccccchHHHHhcCCCCCCHHhCCCchhcc-cccccccccCCCCCEEECcccCC-chhHHHHHHHHHHHHHHCceEEE
Confidence            37899999999999999999999999999988 4211001123 799999998863 4567889999999999999999 


Q ss_pred             -----------HHHHHHHHHhcCCHHHHHhhcccCCCCceecccCCCCCCCCCCCcccc
Q 036869           93 -----------GNVDSLRRLHEKDEELKQEFYSRDETRSVTYNSNFDLYQAPAANWRDS  140 (141)
Q Consensus        93 -----------~~~~~~~~FF~lP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~dw~e~  140 (141)
                                 ++++++++||+||.|+|+++.........||+...........+|+|.
T Consensus        86 ~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~  144 (357)
T PLN02904         86 INHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDF  144 (357)
T ss_pred             EeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEE
Confidence                       899999999999999999986543334456765443333455688875

>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query141
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 5e-21
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 6e-11
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score = 85.8 bits (213), Expect = 5e-21
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 18/139 (12%)

Query: 21  TSVKGIVDFAADRIPQIFIH---ELPKLSDKSHSSDLYKSV-FHVIDFQGIDK-DESLRC 75
             V+ +       IP+ +I    EL  ++D               ID + I+  DE +R 
Sbjct: 5   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 64

Query: 76  HVIDKVRDSCQKWGFF-------SGNV-----DSLRRLHEKDEELKQEFYSRDETRSVT- 122
           + I++++ +   WG           ++      +         E K+++ +   T  +  
Sbjct: 65  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124

Query: 123 YNSNFDLYQAPAANWRDSL 141
           Y S      +    W D  
Sbjct: 125 YGSKLANNASGQLEWEDYF 143
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query141
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 99.9
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 99.62
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 99.59
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 99.57
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 99.57
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 99.45
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=99.90  E-value=1.3e-24  Score=176.31  Aligned_cols=122  Identities=16%  Similarity=0.291  Sum_probs=98.3

Q ss_pred             ccccHHHHHHccCCCCCCccccCCCCCCCCCCCCC-CC---CC-ccceeecCCCCC-ChhHHHHHHHHHHHHHHhhcHHH
Q 036869           19 SKTSVKGIVDFAADRIPQIFIHELPKLSDKSHSSD-LY---KS-VFHVIDFQGIDK-DESLRCHVIDKVRDSCQKWGFFS   92 (141)
Q Consensus        19 ~~~~v~~l~~~~~~~vP~~yv~p~~~~p~~~~~~~-~~---~~-~iPvIDls~l~~-~~~~r~~~~~~l~~Ac~~~GFF~   92 (141)
                      ++++||+|+++++.+||++|++|++++| ...... ..   .. .||||||+.+.+ ++..|.+++++|++||++|||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~-~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~   81 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELE-SINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH   81 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHT-TCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcc-cccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEE
Confidence            4678999999999999999999988887 411100 01   12 699999999865 45678889999999999999999


Q ss_pred             ------------HHHHHHHHHhcCCHHHHHhhcccCC-CCceecccCCCCCCCCCCCccccC
Q 036869           93 ------------GNVDSLRRLHEKDEELKQEFYSRDE-TRSVTYNSNFDLYQAPAANWRDSL  141 (141)
Q Consensus        93 ------------~~~~~~~~FF~lP~eeK~~~~~~~~-~~~~GY~~~~~~~~~~~~dw~e~l  141 (141)
                                  ++++.+++||+||.|+|+++..... ...+||+...........||+|+|
T Consensus        82 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~  143 (356)
T 1gp6_A           82 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYF  143 (356)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEE
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhhee
Confidence                        9999999999999999999866544 457899877655556788999974
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 141
d1gp6a_ 349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-09
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-04
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 7e-04
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 0.001
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.1 bits (121), Expect = 4e-09
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 18/137 (13%)

Query: 21  TSVKGIVDFAADRIPQIFIH---ELPKLSDKSHSSDLYKSV-FHVIDFQGIDK-DESLRC 75
             V+ +       IP+ +I    EL  ++D               ID + I+  DE +R 
Sbjct: 4   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63

Query: 76  HVIDKVRDSCQKWGFFS----GNVDSL--------RRLHEKDEELKQEFYSRDETRSV-T 122
           + I++++ +   WG       G    L                E K+++ +   T  +  
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123

Query: 123 YNSNFDLYQAPAANWRD 139
           Y S      +    W D
Sbjct: 124 YGSKLANNASGQLEWED 140
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query141
d1gp6a_ 349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 99.89
d1w9ya1 307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 99.44
d1dcsa_ 311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.29
d1odma_ 329 Isopenicillin N synthase {Emericella nidulans [Tax 99.16
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=4.5e-24  Score=169.01  Aligned_cols=119  Identities=18%  Similarity=0.311  Sum_probs=93.3

Q ss_pred             cccHHHHHHccCCCCCCccccCCCCCCCCCCCC----CCCCC-ccceeecCCCCC-ChhHHHHHHHHHHHHHHhhcHHH-
Q 036869           20 KTSVKGIVDFAADRIPQIFIHELPKLSDKSHSS----DLYKS-VFHVIDFQGIDK-DESLRCHVIDKVRDSCQKWGFFS-   92 (141)
Q Consensus        20 ~~~v~~l~~~~~~~vP~~yv~p~~~~p~~~~~~----~~~~~-~iPvIDls~l~~-~~~~r~~~~~~l~~Ac~~~GFF~-   92 (141)
                      +..|++|+++|+.+||++||||++++| .+...    ....+ +||||||+.|.+ ++..|++++++|++||++||||| 
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l   81 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELE-SINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   81 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHT-TCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcC-CCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEE
Confidence            458999999999999999999999998 52110    01233 899999999876 66778899999999999999999 


Q ss_pred             -----------HHHHHHHHHhcCCHHHHHhhcccCCCC-ceecccCCCCCCCCCCCccc
Q 036869           93 -----------GNVDSLRRLHEKDEELKQEFYSRDETR-SVTYNSNFDLYQAPAANWRD  139 (141)
Q Consensus        93 -----------~~~~~~~~FF~lP~eeK~~~~~~~~~~-~~GY~~~~~~~~~~~~dw~e  139 (141)
                                 ++++++++||+||.|+|++|....... ..||+...........+|.+
T Consensus        82 ~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  140 (349)
T d1gp6a_          82 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWED  140 (349)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCE
T ss_pred             EccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhh
Confidence                       999999999999999999986544333 34556554444455566655
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure