Citrus Sinensis ID: 036963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQANLTTHRYQDHYYHAAAATTSQQVSNPPPPPPPRPLPLTQEVMYSNLFQYQQANYGIPSGFYGEYRYLPVTLPTTSSSSSSSSATSSQQPQQHELLRYGMQLESSSSSASDPHESTRRNSDTSHPGD
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEcEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccc
Coil and Loop (DISEMBL)
nvrrrhyrgvrqrpwgkwaaeirDPKKAARVWLGTFDTAEAAALAYDEAALRFkgskaklnfPERVQANLtthryqdhyyhaaaattsqqvsnppppppprplpltqevMYSNLFQYqqanygipsgfygeyrylpvtlpttssssssssatssqqpQQHELLRYGmqlesssssasdphestrrnsdtshpgd
Flexible Loop (DISEMBL)
nvrrrhyrgvrqrpwgkwaaeirdpKKAARVWLGTFDTAEAAALAYDEAALRFkgskaklnfPERVQANLTTHRYQDHYYHAAAATTSQQVSNPPPPPPPRPLPLTQEVMYSNLFQYQQANYGIPSGFYGEYRYLPVTLPTTSSSSSSSSATSSQQPQQHELLRYGMQLEsssssasdphestrrnsdtshpgd
Low Complexity Region (SEG)
NVrrrhyrgvrqrPWGKWAAEIRDPKKAARVWLGTFDTaeaaalaydeaalRFKGSKAKLNFPERVQANLTTHRYQDHYYHAAAATTSQQVSNppppppprplplTQEVMYSNLFQYQQANYGIPSGFYGEYRYLPVTLPttssssssssatssQQPQQHELLRYGMQLEsssssasDPHESTRRNSDTSHPGD
Disordered region (IsUnstruct)
*********VRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQANLTTHRYQDHYYHAA************************EVMYSNLFQYQQANYGIPSGFYGEYRYLPVTL*******************************************************
Disordered Region (DISOPRED)
****RHY*GVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPE**********************************************************************************************************************************
Disordered Region (DISEMBL)
*************PWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQANLTTHRYQDHYYHAAAA**************PRPLPLTQEVMYSNLFQYQQANYGIPSGFYGEYRYLPVTL********************HELLRYGMQ**************************
Disordered Region (DISPRO)
****RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPER*********************************************************************************************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQANLTTHRYQDHYYHAAAATTSQQVSNPPPPPPPRPLPLTQEVMYSNLFQYQQANYGIPSGFYGEYRYLPVTLPTTSSSSSSSSATSSQQPQQHELLRYGMQLESSSSSASDPHESTRRNSDTSHPGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q9FH54	248	Ethylene-responsive trans	yes	no	0.345	0.270	0.925	2e-32
Q9LYU3	212	Ethylene-responsive trans	no	no	0.360	0.330	0.885	3e-31
P93007	218	Ethylene-responsive trans	no	no	0.365	0.325	0.788	2e-28
Q9LY29	263	Ethylene-responsive trans	no	no	0.340	0.250	0.893	4e-25
Q40479	233	Ethylene-responsive trans	N/A	no	0.335	0.278	0.757	7e-23
O80338	243	Ethylene-responsive trans	no	no	0.345	0.275	0.735	7e-23
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.335	0.274	0.757	8e-23
O80337	268	Ethylene-responsive trans	no	no	0.335	0.242	0.742	3e-22
P42736	248	Ethylene-responsive trans	no	no	0.319	0.25	0.709	4e-22
Q9FGF8	391	Ethylene-responsive trans	no	no	0.278	0.138	0.851	8e-22

>sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/67 (92%), Positives = 67/67 (100%)

Query: 1   NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKL 60
           ++RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE+AALAYDEAAL+FKGSKAKL
Sbjct: 84  DLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKL 143

Query: 61  NFPERVQ 67
           NFPERVQ
Sbjct: 144 NFPERVQ 150

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/70 (88%), Positives = 65/70 (92%)

Query: 3   RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNF 62
           RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AALAYD AAL+FKG+KAKLNF
Sbjct: 35  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94

Query: 63  PERVQANLTT 72
           PERVQ   TT
Sbjct: 95  PERVQGPTTT 104

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 62/71 (87%)

Query: 1   NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKL 60
           N R+R+YRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAE AALAYD+AA  F+G KAKL
Sbjct: 64  NSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKL 123

Query: 61  NFPERVQANLT 71
           NFPE ++ N T
Sbjct: 124 NFPEHIRVNPT 134

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY29|EF115_ARATH Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1

 Score =  114 bits (285), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 64/66 (96%)

Query: 2   VRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLN 61
           +R+RHYRGVRQRPWGKWAAEIRDP+KAARVWLGTF+TAEAAALAYD AAL+FKGSKAKLN
Sbjct: 87  LRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLN 146

Query: 62  FPERVQ 67
           FPER Q
Sbjct: 147 FPERAQ 152

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  107 bits (266), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 56/66 (84%), Gaps = 1/66 (1%)

Query: 5   RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFP 63
           RHYRGVRQRPWGK+AAEIRDP K  ARVWLGT++TAE AALAYD+AA R +GSKA LNFP
Sbjct: 97  RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 156

Query: 64  ERVQAN 69
            R+  N
Sbjct: 157 HRIGLN 162

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  107 bits (266), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 1/68 (1%)

Query: 2   VRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKL 60
           V+ +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTF+TAE AALAYD AA R +GS+A L
Sbjct: 112 VKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALL 171

Query: 61  NFPERVQA 68
           NFP RV +
Sbjct: 172 NFPLRVNS 179

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 56/66 (84%), Gaps = 1/66 (1%)

Query: 5   RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFP 63
           RHYRGVRQRPWGK+AAEIRDP K  ARVWLGT++TAE AALAYD+AA R +GSKA LNFP
Sbjct: 101 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160

Query: 64  ERVQAN 69
            R+  N
Sbjct: 161 HRIGLN 166

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  105 bits (261), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 55/66 (83%), Gaps = 1/66 (1%)

Query: 5   RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFP 63
           +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTF+TAE AALAYD AA R +GS+A LNFP
Sbjct: 146 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205

Query: 64  ERVQAN 69
            RV + 
Sbjct: 206 LRVNSG 211

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 53/62 (85%)

Query: 3   RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNF 62
           R+  YRG+R+RPWGKWAAEIRDP+K  RVWLGTF+TAE AA+AYD AA + +G KAKLNF
Sbjct: 75  RKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNF 134

Query: 63  PE 64
           P+
Sbjct: 135 PD 136

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGF8|ABR1_ARATH Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1

 Score =  103 bits (256), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 50/54 (92%)

Query: 14  PWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQ 67
           PWGKWAAEIRDP KAARVWLGTFD AE+AA AYDEAALRF+G+KAKLNFPE V+
Sbjct: 192 PWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVK 245

Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
413918188	422	putative AP2/EREBP transcription factor	0.567	0.260	0.642	2e-32
300079024	235	ethylene response factor 14 [Actinidia d	0.871	0.719	0.505	3e-32
225456495	315	PREDICTED: ethylene-responsive transcrip	0.587	0.361	0.633	8e-32
225425266	237	PREDICTED: ethylene-responsive transcrip	0.345	0.282	0.955	2e-31
255543212	249	AP2 domain transcription factor RAP2.3,	0.350	0.273	0.911	4e-31
414587478	443	TPA: putative AP2/EREBP transcription fa	0.597	0.261	0.608	5e-31
292668929	245	AP2 domain class transcription factor [M	0.608	0.481	0.595	5e-31
224075453	234	AP2/ERF domain-containing transcription	0.427	0.354	0.738	5e-31
414587477	445	TPA: putative AP2/EREBP transcription fa	0.597	0.260	0.608	5e-31
226433075	226	RAP2-like protein [Juglans nigra]	0.608	0.522	0.638	6e-31

>gi|413918188|gb|AFW58120.1| putative AP2/EREBP transcription factor superfamily protein [Zea mays]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/123 (64%), Positives = 86/123 (69%), Gaps = 13/123 (10%)

Query: 3   RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNF 62
           RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AA+AYDEAALRFKG+KAKLNF
Sbjct: 189 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLNF 248

Query: 63  PERVQAN-----LTTHRYQDHYYHAAAATTSQQVSNPPPPPPPRPLPLTQEVM-YSNLFQ 116
           PERVQ       L T    DH + +AA T +         PPP      Q V+ Y +L Q
Sbjct: 249 PERVQGRTDLGFLVTRGIPDHRHPSAAVTLAAM-------PPPHHQHGHQTVVPYPDLMQ 301

Query: 117 YQQ 119
           Y Q
Sbjct: 302 YAQ 304

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079024|gb|ADJ67443.1| ethylene response factor 14 [Actinidia deliciosa]

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/198 (50%), Positives = 123/198 (62%), Gaps = 29/198 (14%)

Query: 1   NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKL 60
           NV +RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AALAYDEAALRFKG+KAKL
Sbjct: 30  NVGKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDEAALRFKGTKAKL 89

Query: 61  NFPERVQANLTTHRYQDHYYHAAAATT--SQQVSNPPPPPPPRPL----PLTQEVMYSNL 114
           NFPE+VQA       +  Y +  A+TT    ++SNP  PPPP        ++ +  Y +L
Sbjct: 90  NFPEKVQA-------KTEYAYLTASTTHGEDRISNPYVPPPPPAPPLPDSMSSQETYPDL 142

Query: 115 FQYQQ----ANYGIP---SGFYGEYRYL--PVTLPTTSSSSSSS-------SATSSQQPQ 158
           FQY Q    ++   P   S  Y ++ ++    T P   SS +S+            QQ Q
Sbjct: 143 FQYAQLLSSSDADFPYFSSALYNQHPFVSQSSTTPLMYSSVASNPQQQQQQEQQQQQQQQ 202

Query: 159 QHELLRYGMQLESSSSSA 176
           QHE L +   +ESSSS A
Sbjct: 203 QHEFLSFQSHMESSSSGA 220

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456495|ref|XP_002280924.1| PREDICTED: ethylene-responsive transcription factor ERF114-like [Vitis vinifera]

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/131 (63%), Positives = 88/131 (67%), Gaps = 17/131 (12%)

Query: 2   VRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLN 61
           +RRRHYRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAE AALAYDEAALRFKG+KAKLN
Sbjct: 121 LRRRHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAALAYDEAALRFKGNKAKLN 180

Query: 62  FPERVQA----NLTTHRYQDHYYHAAAATTSQQVSNPPPPPPPRP-LPLTQEVMYSNLFQ 116
           FPERVQ        T+R QD           QQ+ NP  PP P P LP      Y NL  
Sbjct: 181 FPERVQGRSELGYLTNR-QDFLL-----PQQQQLPNPAVPPLPHPSLPRPS---YPNLHH 231

Query: 117 YQQANYGIPSG 127
           Y Q    +P G
Sbjct: 232 YAQL---LPGG 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425266|ref|XP_002267814.1| PREDICTED: ethylene-responsive transcription factor ERF113 [Vitis vinifera] gi|296085528|emb|CBI29260.3| unnamed protein product [Vitis vinifera]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/67 (95%), Positives = 66/67 (98%)

Query: 1   NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKL 60
           NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AALAYD+AALRFKG+KAKL
Sbjct: 47  NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDQAALRFKGTKAKL 106

Query: 61  NFPERVQ 67
           NFPERVQ
Sbjct: 107 NFPERVQ 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543212|ref|XP_002512669.1| AP2 domain transcription factor RAP2.3, putative [Ricinus communis] gi|223548630|gb|EEF50121.1| AP2 domain transcription factor RAP2.3, putative [Ricinus communis]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/68 (91%), Positives = 65/68 (95%)

Query: 1   NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKL 60
           N RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AALAYD+AAL+FKG+KAKL
Sbjct: 51  NTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKL 110

Query: 61  NFPERVQA 68
           NFPERVQ 
Sbjct: 111 NFPERVQG 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414587478|tpg|DAA38049.1| TPA: putative AP2/EREBP transcription factor superfamily protein [Zea mays]

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 83/125 (66%), Gaps = 9/125 (7%)

Query: 4   RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFP 63
           RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AA+AYDEAALRFKG+KAKLNFP
Sbjct: 214 RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLNFP 273

Query: 64  ERVQAN-----LTTHRYQDHYYHAAAATTSQ----QVSNPPPPPPPRPLPLTQEVMYSNL 114
           ERVQ       + T    DH+ H  AA  +     Q    P     RP  +     Y +L
Sbjct: 274 ERVQGRTDLGFVVTRGIPDHHRHPRAAAVNLAAMPQAQAQPHLQHGRPTVMPYPYPYPDL 333

Query: 115 FQYQQ 119
            QY Q
Sbjct: 334 MQYAQ 338

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668929|gb|ADE41119.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 87/126 (69%), Gaps = 8/126 (6%)

Query: 2   VRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLN 61
           VRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AA+AYD AALRFKG+KAKLN
Sbjct: 51  VRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDNAALRFKGTKAKLN 110

Query: 62  FPERVQAN-----LTTHRYQDHYYHAAAATT--SQQVSNPPPPPPPRPLPLTQE-VMYSN 113
           FPERVQ       L           + AA+T  +Q +  P     P PL  +Q+   + +
Sbjct: 111 FPERVQGKTDFGILMGSSGTTTNSSSGAASTQRTQNLMRPAGQTAPAPLITSQQPETFPD 170

Query: 114 LFQYQQ 119
           L+QY Q
Sbjct: 171 LYQYAQ 176

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075453|ref|XP_002304640.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222842072|gb|EEE79619.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 73/88 (82%), Gaps = 5/88 (5%)

Query: 1   NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKL 60
           N RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AA+AYD+AAL+FKG+KAKL
Sbjct: 49  NTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAVAYDKAALKFKGTKAKL 108

Query: 61  NFPERVQANLTTHRYQDHYYHAAAATTS 88
           NFPERVQ      R +  YY  +  +T+
Sbjct: 109 NFPERVQG-----RTEFGYYMGSGTSTN 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414587477|tpg|DAA38048.1| TPA: putative AP2/EREBP transcription factor superfamily protein [Zea mays]

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 83/125 (66%), Gaps = 9/125 (7%)

Query: 4   RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFP 63
           RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AA+AYDEAALRFKG+KAKLNFP
Sbjct: 216 RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDEAALRFKGTKAKLNFP 275

Query: 64  ERVQAN-----LTTHRYQDHYYHAAAATTSQ----QVSNPPPPPPPRPLPLTQEVMYSNL 114
           ERVQ       + T    DH+ H  AA  +     Q    P     RP  +     Y +L
Sbjct: 276 ERVQGRTDLGFVVTRGIPDHHRHPRAAAVNLAAMPQAQAQPHLQHGRPTVMPYPYPYPDL 335

Query: 115 FQYQQ 119
            QY Q
Sbjct: 336 MQYAQ 340

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226433075|gb|ACO55953.1| RAP2-like protein [Juglans nigra]

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/119 (63%), Positives = 87/119 (73%), Gaps = 1/119 (0%)

Query: 1   NVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKL 60
           N RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AALAYD AALRFKG+KAKL
Sbjct: 52  NARRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDRAALRFKGTKAKL 111

Query: 61  NFPERVQANLTTHRYQDHYYHAAAATTSQQVSNPPPPPPPRPLPLTQEVMYSNLFQYQQ 119
           NFPERVQ   +   Y   + + + + ++  V NP P   P P  L QE  +  L+QY Q
Sbjct: 112 NFPERVQGT-SEFGYPSGFGNTSVSQSAVPVQNPRPVVNPPPSTLPQESTFPGLYQYAQ 169

Source: Juglans nigra

Species: Juglans nigra

Genus: Juglans

Family: Juglandaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.773	0.707	0.367	8.3e-19
TAIR|locus:2156171	248	AT5G61890 [Arabidopsis thalian	0.335	0.262	0.615	9.5e-18
TAIR|locus:2183304	263	AT5G07310 [Arabidopsis thalian	0.345	0.254	0.594	1.6e-17
TAIR|locus:2018635	192	RAP2.6 "related to AP2 6" [Ara	0.613	0.619	0.365	9.8e-16
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.278	0.245	0.648	1.6e-15
TAIR|locus:2176095	391	ABR1 "ABA REPRESSOR1" [Arabido	0.561	0.278	0.409	2.8e-15
TAIR|locus:2197076	358	RAP2.12 "related to AP2 12" [A	0.288	0.156	0.561	2.7e-13
TAIR|locus:2090975	379	RAP2.2 "related to AP2 2" [Ara	0.314	0.160	0.491	4.2e-13
TAIR|locus:2089368	248	EBP "ethylene-responsive eleme	0.262	0.205	0.568	7.1e-13
TAIR|locus:2167659	200	ERF9 "erf domain protein 9" [A	0.407	0.395	0.412	9.1e-13

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 58/158 (36%), Positives = 71/158 (44%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERVQANLTTH 73
             PWGKWAAEIRDPKKAARVWLGTF+T             +FKG+KAKLNFPERVQ   TT 
Sbjct:    46 PWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTT 105

Query:    74 RYQDHYYHAAAATTSQQVSNXXXXXXXXXXXXTQEVMYS-NLFQYQQANYGIPSGFYGEY 132
                    HA    +    S             +  + Y+ ++ QY Q    + S    + 
Sbjct:   106 TIS----HAPRGVSESMNSPPPRPGPPSTTTTSWPMTYNQDILQYAQL---LTSNNEVDL 158

Query:   133 RYLPVTLPXXXXXXXXXXXXXXQQPQQHELLRYGMQLE 170
              Y   TL               QQ QQ +L +   Q E
Sbjct:   159 SYYTSTLFSQPFSTPSSSSSSSQQTQQQQLQQQQQQRE 196

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2156171 AT5G61890 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 40/65 (61%), Positives = 44/65 (67%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERVQANLTTH 73
             PWGKWAAEIRDPKKAARVWLGTF+T             +FKGSKAKLNFPERVQ    + 
Sbjct:    97 PWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNST 156

Query:    74 RYQDH 78
              Y  +
Sbjct:   157 YYSSN 161

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2183304 AT5G07310 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 41/69 (59%), Positives = 47/69 (68%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERVQ--ANLT 71
             PWGKWAAEIRDP+KAARVWLGTF+T             +FKGSKAKLNFPER Q  +N +
Sbjct:    99 PWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNTS 158

Query:    72 THRYQDHYY 80
             T     +YY
Sbjct:   159 TTTGPPNYY 167

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2018635 RAP2.6 "related to AP2 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 45/123 (36%), Positives = 57/123 (46%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERVQANLTTH 73
             PWGKWAAEIRDP KA RVWLGTF+T             RF+GSKAKLNFPE V    T  
Sbjct:    68 PWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVGTQ-TIQ 126

Query:    74 RYQDHYYHAAAATTSQQVSNXXXXXXXXXXXXTQEVMYSNLFQYQQANYGI--PSGFYGE 131
             R   H+   +   +   +               Q+ +   L   ++ N+    P   Y +
Sbjct:   127 R-NSHFLQNSMQPSLTYIDQCPTLLSYSRCMEQQQPLVGMLQPTEEENHFFEKPWTEYDQ 185

Query:   132 YRY 134
             Y Y
Sbjct:   186 YNY 188

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 35/54 (64%), Positives = 39/54 (72%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERVQ 67
             PWGKWAAEIRDP +AARVWLGTFDT             RF+G+KAKLNFPE V+
Sbjct:    84 PWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVR 137

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2176095 ABR1 "ABA REPRESSOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 45/110 (40%), Positives = 52/110 (47%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERVQ-ANLTT 72
             PWGKWAAEIRDP KAARVWLGTFD              RF+G+KAKLNFPE V+     +
Sbjct:   192 PWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPAS 251

Query:    73 HRYQDHYYHAAAATTSQQVSNXXXXXXXXXXXXTQEVMYSNLFQYQQANY 122
                Q  +  AA   T  + S              Q V    L Q    +Y
Sbjct:   252 TEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQSVHSQPLMQSYNLSY 301

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2197076 RAP2.12 "related to AP2 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/57 (56%), Positives = 39/57 (68%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPER-VQAN 69
             PWGKWAAEIRDP++ AR+WLGTF T             R +GSKAK+NFPE  ++AN
Sbjct:   132 PWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKAN 188

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0070483 "detection of hypoxia" evidence=IEP

TAIR|locus:2090975 RAP2.2 "related to AP2 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERVQANLTTH 73
             PWGKWAAEIRDP+K +R WLGTFDT             R +G+KAK+NFPE    ++ + 
Sbjct:   135 PWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQ 194

Query:    74 R 74
             +
Sbjct:   195 K 195

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2089368 EBP "ethylene-responsive element binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 29/51 (56%), Positives = 34/51 (66%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPE 64
             PWGKWAAEIRDP+K  RVWLGTF+T             + +G KAKLNFP+
Sbjct:    86 PWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPD 136

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;IMP;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0051707 "response to other organism" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0008219 "cell death" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2167659 ERF9 "erf domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 33/80 (41%), Positives = 45/80 (56%)

Query:    14 PWGKWAAEIRDPKKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERVQANLTTH 73
             PWG++AAEIRDP K  RVWLGTFDT              F+GSKAK NFP   ++     
Sbjct:    40 PWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTVND 99

Query:    74 RYQ-DHYYHAAAATTSQQVS 92
               + D Y +    TT+++++
Sbjct:   100 GGENDSYVNRTTVTTAREMT 119

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	5e-35
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	8e-33
pfam00847	53	pfam00847, AP2, AP2 domain	1e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  117 bits (295), Expect = 5e-35
 Identities = 44/59 (74%), Positives = 47/59 (79%)

Query: 6  HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPE 64
           YRGVRQRPWGKW AEIRDP K  RVWLGTFDTAE AA AYD AA +F+G  A+LNFP 
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  111 bits (281), Expect = 8e-33
 Identities = 43/59 (72%), Positives = 47/59 (79%)

Query: 6  HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPE 64
           YRGVRQRPWGKW AEIRDP    R+WLGTFDTAE AA AYD AAL+ +GS A LNFP+
Sbjct: 2  KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 64.6 bits (158), Expect = 1e-14
 Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 6  HYRGVRQRP-WGKWAAEIRDPK--KAARVWLGTFDTAEAAALAYDEAALRFKG 55
           Y+GVR    WG+W AEIRDP   K  R  LGTF T EAA  A   A L+ +G
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEEAAR-AAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.81
PHA00280	121	putative NHN endonuclease	99.42
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.18
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	88.39

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=7.4e-21  Score=131.85  Aligned_cols=61  Identities=70%  Similarity=1.259  Sum_probs=57.0

Q ss_pred             CceeeEEECCCCcEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHHhcCCCCCCCCChh
Q 036963            5 RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPER   65 (194)
Q Consensus         5 S~YRGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~kl~G~~A~lNFP~~   65 (194)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+||||.|||+|+++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998888899999999876688999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.81  E-value=6.6e-20  Score=128.67  Aligned_cols=62  Identities=71%  Similarity=1.283  Sum_probs=57.8

Q ss_pred             ceeeEEECCCCcEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHHhcCCCCCCCCChhhh
Q 036963            6 HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQ   67 (194)
Q Consensus         6 ~YRGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~kl~G~~A~lNFP~~~~   67 (194)
                      +|+||+++++|||+|+|+++.+++.++||+|+|+||||.|||.|+++++|..+++|||...+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            59999878889999999987788999999999999999999999999999999999998654

>PHA00280 putative NHN endonuclease

Probab=99.42  E-value=3.3e-13  Score=107.11  Aligned_cols=55  Identities=15%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             CCCCceeeEE-ECCCCcEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHHhcCCCCC
Q 036963            2 VRRRHYRGVR-QRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAK   59 (194)
Q Consensus         2 ~r~S~YRGVr-~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~kl~G~~A~   59 (194)
                      .++|+|+||. .+..|||+|+|.  .+||+++||.|+++|+|+.||+ ++++++|++|.
T Consensus        64 ~N~SG~kGV~~~k~~~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         64 SNTSGLKGLSWSKEREMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCeeEEecCCCeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            3579999994 567899999999  6677999999999999999997 77889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.18  E-value=5.2e-11  Score=80.44  Aligned_cols=52  Identities=35%  Similarity=0.503  Sum_probs=44.5

Q ss_pred             CceeeEE-ECCCCcEEEEEeCCC---CCcEEecccccCHHHHHHHHHHHHHHhcCC
Q 036963            5 RHYRGVR-QRPWGKWAAEIRDPK---KAARVWLGTFDTAEAAALAYDEAALRFKGS   56 (194)
Q Consensus         5 S~YRGVr-~r~~GKW~A~I~~~~---kgkri~LGtFdT~EEAA~AYD~Aa~kl~G~   56 (194)
                      |+|+||+ .+..++|+|+|++..   +++.++||.|+++|||++|++.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899995 556899999999731   148999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=88.39  E-value=1.6  Score=28.59  Aligned_cols=38  Identities=18%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             cEEEEEe--C--CCCCcEEecccccCHHHHHHHHHHHHHHhc
Q 036963           17 KWAAEIR--D--PKKAARVWLGTFDTAEAAALAYDEAALRFK   54 (194)
Q Consensus        17 KW~A~I~--~--~~kgkri~LGtFdT~EEAA~AYD~Aa~kl~   54 (194)
                      +|..+|.  +  .++.++++-+-|.|..||..+..++...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  3  355678899999999999999988776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-10
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-10

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 14 PWGKWAAEIRDP-KKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERVQAN 69
          PWGK+AAEIRDP K  ARVWLGTF+T             R +GS+A LNFP RV + 
Sbjct: 13 PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSG 69

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 14 PWGKWAAEIRDP-KKAARVWLGTFDTXXXXXXXXXXXXXRFKGSKAKLNFPERV 66
          PWGK+AAEIRDP K  ARVWLGTF+T             R +GS+A LNFP RV
Sbjct: 10 PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
1gcc_A	63	Ethylene responsive element binding factor 1; tran	5e-40

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  129 bits (327), Expect = 5e-40
 Identities = 49/63 (77%), Positives = 54/63 (85%), Gaps = 1/63 (1%)

Query: 5  RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFP 63
          +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTF+TAE AALAYD AA R +GS+A LNFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 64 ERV 66
           RV
Sbjct: 61 LRV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.9
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	92.61
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	83.23
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	80.62

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.90  E-value=1.5e-24  Score=152.58  Aligned_cols=62  Identities=79%  Similarity=1.322  Sum_probs=57.6

Q ss_pred             CceeeEEECCCCcEEEEEeCCCC-CcEEecccccCHHHHHHHHHHHHHHhcCCCCCCCCChhh
Q 036963            5 RHYRGVRQRPWGKWAAEIRDPKK-AARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERV   66 (194)
Q Consensus         5 S~YRGVr~r~~GKW~A~I~~~~k-gkri~LGtFdT~EEAA~AYD~Aa~kl~G~~A~lNFP~~~   66 (194)
                      .+||||+++++|||+|+|+++.+ |+++|||+|+|+||||+|||+|+++++|.++++|||+++
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            37999988889999999998874 789999999999999999999999999999999999863

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=92.61  E-value=0.065  Score=38.98  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=20.8

Q ss_pred             CCCCceeeE-EECCCCcEEEEEeCCCC
Q 036963            2 VRRRHYRGV-RQRPWGKWAAEIRDPKK   27 (194)
Q Consensus         2 ~r~S~YRGV-r~r~~GKW~A~I~~~~k   27 (194)
                      ..+|+|+|| |..+.+.|.|.-.+.++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~   29 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGAS   29 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCe
Confidence            468999999 66678999999996643

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=83.23  E-value=0.22  Score=39.41  Aligned_cols=37  Identities=5%  Similarity=-0.092  Sum_probs=27.3

Q ss_pred             eeEEECCCCcEEEEEeCCCCCcEEecccccCHHHHHHHHH
Q 036963            8 RGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYD   47 (194)
Q Consensus         8 RGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAA~AYD   47 (194)
                      +||.....++|.+.|.+. +  .++||.|++.+|||+++.
T Consensus       110 ~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          110 KAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred             eeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence            455223345699999865 3  567999999999999964

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=80.62  E-value=1.7  Score=35.76  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=30.6

Q ss_pred             eeEEECCCCcEEEEEeCCCCCcEEecccccCHHHHHHHHHHHHHHh
Q 036963            8 RGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRF   53 (194)
Q Consensus         8 RGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAA~AYD~Aa~kl   53 (194)
                      .||+.++.|.|..++.  .+|+++.+|.  |.+||..+..++...+
T Consensus        14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            3787777889998876  4566888996  8888877766554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-33

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  111 bits (280), Expect = 2e-33
 Identities = 49/63 (77%), Positives = 54/63 (85%), Gaps = 1/63 (1%)

Query: 5  RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFP 63
          +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTF+TAE AALAYD AA R +GS+A LNFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 64 ERV 66
           RV
Sbjct: 61 LRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.4e-24  Score=151.76  Aligned_cols=61  Identities=79%  Similarity=1.316  Sum_probs=56.2

Q ss_pred             ceeeEEECCCCcEEEEEeCCC-CCcEEecccccCHHHHHHHHHHHHHHhcCCCCCCCCChhh
Q 036963            6 HYRGVRQRPWGKWAAEIRDPK-KAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERV   66 (194)
Q Consensus         6 ~YRGVr~r~~GKW~A~I~~~~-kgkri~LGtFdT~EEAA~AYD~Aa~kl~G~~A~lNFP~~~   66 (194)
                      +||||+++++|||+|+|+++. +++++|||+|+|+||||+|||+|+++++|.++.+|||..+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            599998888899999999864 5689999999999999999999999999999999999753