Citrus Sinensis ID: 037001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADHQRDSRSASLSKNHASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHcccccEEEEEcccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHcccccccccccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEEEccHHHHHHccccccccHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccEEccccccccccccccccccEEEEEcccccccEcccccccccccccccccccHHHHHHHcccccccccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
myrergaggsksevvvgpvdrkRINDALDKqlersspstsrttingkdmsvllgkhpadhqrdsrsaslsknhasdeesetdseesdvsgsegddtsWISWFCNlrgneffcevdddyiqddfnlcglsgqvpyydyALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDkyknydfgrcprvyccgqpclpvgqsdiprsstvkiycprcediyyprskyqgnidgayfgttfphlflmtyghlkpqkavqsyaprvfgfkihkp
Flexible Loop (DISEMBL)
myrergaggsksevvvgpvdrkrindaldkqlersspstsrttingkdmsvllgkhpadhqrdsrsaslsknhasdeesetdseesdvsgsegdDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLpvgqsdiprsstVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP
Low Complexity Region (SEG)
MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADHQRDSRSASLSKNHAsdeesetdseesdvsgsegddtsWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP
Disordered region (IsUnstruct)
************************************************************************************************SWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKI***
Disordered Region (DISOPRED)
**************************************************************************************************ISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHK*
Disordered Region (DISEMBL)
*************VVVGPVDRKRINDALDK***********TTINGKDMSVLLGKH**************************************DTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP
Disordered Region (DISPRO)
******************VDRKRINDALDKQLE*************************************************************DTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADHQRDSRSASLSKNHASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
P40228	287	Casein kinase II subunit	yes	no	0.968	0.958	0.790	1e-132
P40229	282	Casein kinase II subunit	no	no	0.971	0.978	0.786	1e-129
O80507	283	Putative casein kinase II	no	no	0.919	0.922	0.781	1e-124
O81275	276	Casein kinase II subunit	no	no	0.911	0.938	0.750	1e-117
Q91398	215	Casein kinase II subunit	yes	no	0.676	0.893	0.583	1e-66
P67874	215	Casein kinase II subunit	yes	no	0.676	0.893	0.583	1e-66
P67873	215	Casein kinase II subunit	yes	no	0.676	0.893	0.583	1e-66
P67872	215	Casein kinase II subunit	yes	no	0.676	0.893	0.583	1e-66
P67871	215	Casein kinase II subunit	yes	no	0.676	0.893	0.583	1e-66
P67870	215	Casein kinase II subunit	yes	no	0.676	0.893	0.583	1e-66

>sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1

 Score =  469 bits (1208), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/296 (79%), Positives = 254/296 (85%), Gaps = 21/296 (7%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSV--------- 51
           MYR+RG   S+ EVV    DRKRINDAL    ER SPSTSR  +NGK             
Sbjct: 1   MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQ-VNGKGKGTVTAATTTAN 51

Query: 52  LLGKHPADH--QRDSRSASLSKNH-ASDEESETDSEESDVSGSEGDDTSWISWFCNLRGN 108
           L+GK  +++   RDSRSASLSKN+  SD+ES+TDSEESDVSGS+G+DTSWISWFCNLRGN
Sbjct: 52  LIGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGN 111

Query: 109 EFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEML 168
           EFFCEVDDDYIQDDFNLCGLS  VPYY+YALDLILDVESS GEMFTEEQNEL+ESAAEML
Sbjct: 112 EFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEML 171

Query: 169 YGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPR 228
           YGLIHARYILT+KG+AAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCP+
Sbjct: 172 YGLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPK 231

Query: 229 CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KA Q+Y  RVFGFK+HKP
Sbjct: 232 CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVFGFKLHKP 287

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|P40229|CSK2C_ARATH Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1

 Score =  462 bits (1189), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/290 (78%), Positives = 250/290 (86%), Gaps = 14/290 (4%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGK----DMSVLLGKH 56
           MYRERG  GSKSEVV    DRKRIN+  D    R S S S+  +NGK      SVL+GK 
Sbjct: 1   MYRERGMVGSKSEVV----DRKRINEIHDN---RPSHSMSQP-VNGKGKVTSTSVLMGKQ 52

Query: 57  PADHQRDSRSASLSKNHASD--EESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEV 114
               +  SRS S+SK + SD  + S+TDSEES+VSGS+G+DTSWISWFCNLRGNEFFCEV
Sbjct: 53  QLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCEV 112

Query: 115 DDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHA 174
           DDDYIQDDFNLCGLS QVPYYDYALDLILDVESSHGEMFTEEQNEL+ESAAEMLYG+IHA
Sbjct: 113 DDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMIHA 172

Query: 175 RYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYY 234
           R+ILT+KG+A+MLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCP+CED+YY
Sbjct: 173 RFILTSKGLASMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCEDVYY 232

Query: 235 PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA QSY  RVFGFK+HKP
Sbjct: 233 PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYTQRVFGFKLHKP 282

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Arabidopsis thaliana (taxid: 3702)

>sp|O80507|CSK2E_ARATH Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1

 Score =  444 bits (1141), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/270 (78%), Positives = 233/270 (86%), Gaps = 9/270 (3%)

Query: 13  EVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADHQRDSRSASLSKN 72
           E++ G +DRKRINDALDK L++SSPSTSR     KD   +     A  Q  SRS      
Sbjct: 20  EILGGAIDRKRINDALDKHLKKSSPSTSRV-FTSKDKDSVPSTSTAKSQLHSRSP----- 73

Query: 73  HASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQV 132
              D ES+TDSE SDVSGSEGDDTSWISWFCNLRGNEFFCEVD+DYIQDDFNLCGLSGQV
Sbjct: 74  ---DVESDTDSEGSDVSGSEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQV 130

Query: 133 PYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKN 192
           PYYDYALDLILDVESS+G+MFTEEQ+E+VESAAEMLYGLIH RYILTTKGMAAM++KYKN
Sbjct: 131 PYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLYGLIHVRYILTTKGMAAMMEKYKN 190

Query: 193 YDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTF 252
           YDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCP+CEDIYYPRSKYQGNIDGAYFGTTF
Sbjct: 191 YDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTF 250

Query: 253 PHLFLMTYGHLKPQKAVQSYAPRVFGFKIH 282
           PHLFLM YG++KPQK  Q+Y P++FGFK+H
Sbjct: 251 PHLFLMAYGNMKPQKPAQNYVPKIFGFKVH 280

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Arabidopsis thaliana (taxid: 3702)

>sp|O81275|CSK2D_ARATH Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/273 (75%), Positives = 234/273 (85%), Gaps = 14/273 (5%)

Query: 13  EVVVGPVDRKRINDALDKQLERSSPSTSRTTI-NGKDMSVLLGKHPADHQRDSRSASLSK 71
           E++ G +DRKRINDAL+K+LE+SS ST+ + + + KD             +D  S + +K
Sbjct: 17  EILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKD-------------KDPFSFTSTK 63

Query: 72  NHASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQ 131
               D ESETDSE SDVSGSEGDDTSWISWFCNLRGN+FFCEVD+DYIQDDFNLCGLSGQ
Sbjct: 64  TQLPDVESETDSEGSDVSGSEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQ 123

Query: 132 VPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYK 191
           VPYYDYALDLILDV++S+ EMFT+EQ+E+VESAAEMLYGLIH RYILTTKGMAAM +KYK
Sbjct: 124 VPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLIHVRYILTTKGMAAMTEKYK 183

Query: 192 NYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTT 251
           N DFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCP+CEDI YPRSK+QGNIDGAYFGTT
Sbjct: 184 NCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDISYPRSKFQGNIDGAYFGTT 243

Query: 252 FPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           FPHLFLMTYG+LKPQK  QSY P++FGFK+HKP
Sbjct: 244 FPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP 276

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q91398|CSK2B_DANRE Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 141/192 (73%)

Query: 91  SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 150
           S  ++ SWISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 151 EMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLP 210
                 Q++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 211 VGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQ 270
           +G SDIP  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 271 SYAPRVFGFKIH 282
            + PR++GFKIH
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Danio rerio (taxid: 7955)

>sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 141/192 (73%)

Query: 91  SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 150
           S  ++ SWISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 151 EMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLP 210
                 Q++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 211 VGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQ 270
           +G SDIP  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 271 SYAPRVFGFKIH 282
            + PR++GFKIH
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Rattus norvegicus (taxid: 10116)

>sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 141/192 (73%)

Query: 91  SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 150
           S  ++ SWISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 151 EMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLP 210
                 Q++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 211 VGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQ 270
           +G SDIP  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 271 SYAPRVFGFKIH 282
            + PR++GFKIH
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Oryctolagus cuniculus (taxid: 9986)

>sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 141/192 (73%)

Query: 91  SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 150
           S  ++ SWISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 151 EMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLP 210
                 Q++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 211 VGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQ 270
           +G SDIP  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 271 SYAPRVFGFKIH 282
            + PR++GFKIH
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Sus scrofa (taxid: 9823)

>sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 141/192 (73%)

Query: 91  SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 150
           S  ++ SWISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 151 EMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLP 210
                 Q++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 211 VGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQ 270
           +G SDIP  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 271 SYAPRVFGFKIH 282
            + PR++GFKIH
Sbjct: 182 QFVPRLYGFKIH 193

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Participates in Wnt signaling.

Mus musculus (taxid: 10090)

>sp|P67870|CSK2B_HUMAN Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 141/192 (73%)

Query: 91  SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 150
           S  ++ SWISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 151 EMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLP 210
                 Q++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 211 VGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQ 270
           +G SDIP  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 271 SYAPRVFGFKIH 282
            + PR++GFKIH
Sbjct: 182 QFVPRLYGFKIH 193

Participates in Wnt signaling (By similarity). Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
21261784	280	protein kinase Ck2 regulatory subunit 2	0.982	0.996	0.830	1e-136
225453309	288	PREDICTED: putative casein kinase II sub	0.992	0.979	0.848	1e-133
297790971	283	hypothetical protein ARALYDRAFT_494272 [	0.968	0.971	0.811	1e-133
224126601	280	predicted protein [Populus trichocarpa]	0.982	0.996	0.814	1e-132
356497080	285	PREDICTED: casein kinase II subunit beta	0.975	0.971	0.856	1e-130
356541308	286	PREDICTED: casein kinase II subunit beta	0.975	0.968	0.853	1e-130
449461275	291	PREDICTED: casein kinase II subunit beta	0.989	0.965	0.799	1e-130
357482235	281	Casein kinase II subunit beta-4 [Medicag	0.989	1.0	0.852	1e-130
15238013	287	casein kinase 2 subunit beta [Arabidopsi	0.968	0.958	0.790	1e-130
147801660	282	hypothetical protein VITISV_022015 [Viti	0.971	0.978	0.831	1e-128

>gi|21261784|emb|CAD32500.1| protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/283 (83%), Positives = 253/283 (89%), Gaps = 4/283 (1%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADH 60
           MYR+RG G SKSE+V GP+DRKRINDALDK LE+SSPSTSR   +    S   GK    H
Sbjct: 1   MYRDRGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSRAFKDKAVPSTSAGK-SHQH 59

Query: 61  QRDSRSASLSKNHASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQ 120
             D R+   +KN  SD+ESETDSEESDVSGS+G+DTSWISWFCNLRGNEFFCEVDD+YIQ
Sbjct: 60  HPDHRA---TKNKCSDDESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDEYIQ 116

Query: 121 DDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTT 180
           DDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNELVESAAEMLYGLIH RYILT+
Sbjct: 117 DDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTS 176

Query: 181 KGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQ 240
           KGMAAML+KYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCP+CEDIYYPRSKYQ
Sbjct: 177 KGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQ 236

Query: 241 GNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHK 283
           GNIDGAYFGTTFPHLFLMTYGHLKPQK+ Q+Y PRVFGFK+HK
Sbjct: 237 GNIDGAYFGTTFPHLFLMTYGHLKPQKSTQNYVPRVFGFKLHK 279

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453309|ref|XP_002269020.1| PREDICTED: putative casein kinase II subunit beta-4 isoform 1 [Vitis vinifera] gi|297734650|emb|CBI16701.3| unnamed protein product [Vitis vinifera]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/290 (84%), Positives = 262/290 (90%), Gaps = 8/290 (2%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVL------LG 54
           MYRERG G SKSE+V GP+DRKRINDALDK LE+SSPSTS+  ++ KD   L       G
Sbjct: 1   MYRERGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSKG-LSSKDKERLSVPSTSAG 59

Query: 55  KHPADHQRDSRSASLSKNHASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEV 114
           K   DH RD+R+ASL KN  SDEESETDSEESDVSGS+GDDTSWISWFCNLRGNEFFCEV
Sbjct: 60  KSQLDH-RDTRAASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEV 118

Query: 115 DDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHA 174
           DD+YIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNELVESAAEMLYGLIH 
Sbjct: 119 DDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHV 178

Query: 175 RYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYY 234
           RYILT+KGM+AML+KYK+YDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCP+CEDIYY
Sbjct: 179 RYILTSKGMSAMLEKYKSYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYY 238

Query: 235 PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA QSY PRVFGFKIHKP
Sbjct: 239 PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAAQSYVPRVFGFKIHKP 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790971|ref|XP_002863370.1| hypothetical protein ARALYDRAFT_494272 [Arabidopsis lyrata subsp. lyrata] gi|297309205|gb|EFH39629.1| hypothetical protein ARALYDRAFT_494272 [Arabidopsis lyrata subsp. lyrata]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/292 (81%), Positives = 255/292 (87%), Gaps = 17/292 (5%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDM-------SVLL 53
           MYR+RG   S+ EVV    DRKRINDAL    ER SPSTSR  +NGK         SVL+
Sbjct: 1   MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQ-VNGKGKGTAATANSVLI 51

Query: 54  GKHPADHQRDSRSASLSKNH-ASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFC 112
           GK  +   RDSRSASLSKN+  SD+ES+TDSEESDVSGS+G+DTSWISWFCNLRGNEFFC
Sbjct: 52  GKQQSHDHRDSRSASLSKNNNVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFC 111

Query: 113 EVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 172
           EVDDDYIQDDFNLCGLS  VPYY+YALDLILDVESSHGEMFTEEQNEL+ESAAEMLYGLI
Sbjct: 112 EVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSHGEMFTEEQNELIESAAEMLYGLI 171

Query: 173 HARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDI 232
           HARYILT+KG+AAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCP+CEDI
Sbjct: 172 HARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDI 231

Query: 233 YYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           YYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KA Q+Y  RVFGFK+HKP
Sbjct: 232 YYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPSKATQNYVQRVFGFKLHKP 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126601|ref|XP_002329595.1| predicted protein [Populus trichocarpa] gi|222870304|gb|EEF07435.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/285 (81%), Positives = 251/285 (88%), Gaps = 6/285 (2%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKH-PAD 59
           MYRERG GGSK+EV      + RI+D LDK L+RS+PS+SR T NGKD+ + + K  P D
Sbjct: 1   MYRERGIGGSKAEV---DHRKHRISDVLDKHLDRSTPSSSRPT-NGKDLFLFMNKQQPPD 56

Query: 60  HQRDSRSASLSKNHASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYI 119
           +       S   N+ASD ESETDSEESDVSGSEGD+T+WISWFCNLRGNEFFCEVDDDYI
Sbjct: 57  YNNTDHLLS-KDNNASDVESETDSEESDVSGSEGDETTWISWFCNLRGNEFFCEVDDDYI 115

Query: 120 QDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILT 179
           QDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNELVESAAEMLYGLIHARYILT
Sbjct: 116 QDDFNLCGLSTQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHARYILT 175

Query: 180 TKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKY 239
           +KGMAAMLDKYKNYDFGRCPRV+CCGQPCLPVGQSDIPRSS +KI CP+C+DIYYPRSKY
Sbjct: 176 SKGMAAMLDKYKNYDFGRCPRVHCCGQPCLPVGQSDIPRSSNIKICCPKCDDIYYPRSKY 235

Query: 240 QGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           QGNIDGAYFGTTFPHLFLMTYGHLKPQK VQSY PRVFGFKIHKP
Sbjct: 236 QGNIDGAYFGTTFPHLFLMTYGHLKPQKVVQSYVPRVFGFKIHKP 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497080|ref|XP_003517392.1| PREDICTED: casein kinase II subunit beta'-like isoform 1 [Glycine max]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/292 (85%), Positives = 259/292 (88%), Gaps = 15/292 (5%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTT-INGKDMSV--LLGKHP 57
           MYRERG  GSKSEV    VDRKRIND LDKQLERSSPSTSR   INGKD S   LL    
Sbjct: 1   MYRERGGVGSKSEVT--SVDRKRINDVLDKQLERSSPSTSRAAAINGKDRSSSSLLAA-- 56

Query: 58  ADHQRDSRSAS----LSKN-HASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFC 112
               +DSRSAS    +SKN +ASDEESETDSEESDVSGS+GDDTSWISWFCNLRGNEFFC
Sbjct: 57  ---AKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFC 113

Query: 113 EVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 172
           EVDDDYIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYGLI
Sbjct: 114 EVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLI 173

Query: 173 HARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDI 232
           HARYILT+KGMAAMLDKYKNYDFGRCPRVYC GQPC+PVGQSDIPRSSTVKIYCPRCEDI
Sbjct: 174 HARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDI 233

Query: 233 YYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           YYPRSKYQGNIDGAYFGTTFPHLFLMTYG LKPQK  QSY PRVFGFK+HKP
Sbjct: 234 YYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541308|ref|XP_003539120.1| PREDICTED: casein kinase II subunit beta-like [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/293 (85%), Positives = 259/293 (88%), Gaps = 16/293 (5%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTT--INGKDMSV--LLGKH 56
           MYRERG  GSKSEV    VDRKRIND LDKQLERSSPSTSR    INGKD S   LL   
Sbjct: 1   MYRERGGVGSKSEVT--SVDRKRINDVLDKQLERSSPSTSRAAGAINGKDRSSSSLLAA- 57

Query: 57  PADHQRDSRSAS----LSKN-HASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFF 111
                +DSRSAS    +SKN +ASDEESETDSEESDVSGS+GDDTSWISWFCNLRGNEFF
Sbjct: 58  ----AKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFF 113

Query: 112 CEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGL 171
           CEVDDDYIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYGL
Sbjct: 114 CEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGL 173

Query: 172 IHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCED 231
           IHARYILT+KGMAAMLDKYKNYDFGRCPRVYC GQPC+PVGQSDIPRSSTVKIYCPRCED
Sbjct: 174 IHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCED 233

Query: 232 IYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           IYYPRSKYQGNIDGAYFGTTFPHLFLMTYG LKPQK  QSY PRVFGFK+HKP
Sbjct: 234 IYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461275|ref|XP_004148367.1| PREDICTED: casein kinase II subunit beta-like [Cucumis sativus] gi|449505242|ref|XP_004162414.1| PREDICTED: casein kinase II subunit beta-like [Cucumis sativus]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/294 (79%), Positives = 255/294 (86%), Gaps = 13/294 (4%)

Query: 1   MYRER----GAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKD------MS 50
           M+R+R    G G   S++ V P+DRKRINDALDKQLERSSPSTSRT INGKD       S
Sbjct: 1   MHRDRPALGGVGTGSSKLDVTPIDRKRINDALDKQLERSSPSTSRTVINGKDNKPSVPQS 60

Query: 51  VLLGKHPADHQRDSRSASLSKNHASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEF 110
           +L+ K P   QRDSRSASLSK + S+E      E   VSGS+GDDTSWISWFCNLRGNEF
Sbjct: 61  LLMPK-PLSDQRDSRSASLSKTNCSEESETDSEESD-VSGSDGDDTSWISWFCNLRGNEF 118

Query: 111 FCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYG 170
           FCEVDDDYIQDDFNLCGLS QVPYYDYALDLILDVESS+G+MFTEEQNEL+ESAAEMLYG
Sbjct: 119 FCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSNGDMFTEEQNELIESAAEMLYG 178

Query: 171 LIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCE 230
           LIHARYILT+KGMAAMLDK+KNYDFGRCPRVYCCGQPCLPVGQSDIPR+ TVKIYCPRCE
Sbjct: 179 LIHARYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRAGTVKIYCPRCE 238

Query: 231 DIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           D+YYPRSK+Q +IDGAYFGTTFPHLFLMTYGH KPQK+VQSY PRVFGFKIHKP
Sbjct: 239 DVYYPRSKFQ-DIDGAYFGTTFPHLFLMTYGHHKPQKSVQSYVPRVFGFKIHKP 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482235|ref|XP_003611403.1| Casein kinase II subunit beta-4 [Medicago truncatula] gi|355512738|gb|AES94361.1| Casein kinase II subunit beta-4 [Medicago truncatula]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/284 (85%), Positives = 252/284 (88%), Gaps = 3/284 (1%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADH 60
           MYRERG  GSK+EV    VDRKRIND LDKQLERSSPSTSRT   GKD S          
Sbjct: 1   MYRERGGVGSKAEV--ASVDRKRINDVLDKQLERSSPSTSRTINGGKDRSSSSSLLTVKD 58

Query: 61  QRDSRSASLSKNHASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQ 120
            RD RS +LSKN ASDEESETDSEESDVSGS+GDDTSWISWFCNLRGNEFFCEVDDDYIQ
Sbjct: 59  HRDPRSNTLSKN-ASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQ 117

Query: 121 DDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTT 180
           DDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+IHARYILT+
Sbjct: 118 DDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYILTS 177

Query: 181 KGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQ 240
           KG+AAMLDKYKNYDFGRCPRVYC GQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQ
Sbjct: 178 KGLAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQ 237

Query: 241 GNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           GNIDGAYFGTTFPHL LMTYG LKPQK  Q+Y PRVFGFK+HKP
Sbjct: 238 GNIDGAYFGTTFPHLLLMTYGQLKPQKPSQNYVPRVFGFKLHKP 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238013|ref|NP_199519.1| casein kinase 2 subunit beta [Arabidopsis thaliana] gi|729880|sp|P40228.1|CSK2B_ARATH RecName: Full=Casein kinase II subunit beta; Short=CK II beta gi|468264|gb|AAA53233.1| casein kinase II beta subunit CKB1 [Arabidopsis thaliana] gi|8978075|dbj|BAA98103.1| casein kinase II beta chain [Arabidopsis thaliana] gi|332008083|gb|AED95466.1| casein kinase 2 subunit beta [Arabidopsis thaliana]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/296 (79%), Positives = 254/296 (85%), Gaps = 21/296 (7%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSV--------- 51
           MYR+RG   S+ EVV    DRKRINDAL    ER SPSTSR  +NGK             
Sbjct: 1   MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQ-VNGKGKGTVTAATTTAN 51

Query: 52  LLGKHPADH--QRDSRSASLSKNH-ASDEESETDSEESDVSGSEGDDTSWISWFCNLRGN 108
           L+GK  +++   RDSRSASLSKN+  SD+ES+TDSEESDVSGS+G+DTSWISWFCNLRGN
Sbjct: 52  LIGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGN 111

Query: 109 EFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEML 168
           EFFCEVDDDYIQDDFNLCGLS  VPYY+YALDLILDVESS GEMFTEEQNEL+ESAAEML
Sbjct: 112 EFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEML 171

Query: 169 YGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPR 228
           YGLIHARYILT+KG+AAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCP+
Sbjct: 172 YGLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPK 231

Query: 229 CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KA Q+Y  RVFGFK+HKP
Sbjct: 232 CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVFGFKLHKP 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801660|emb|CAN72327.1| hypothetical protein VITISV_022015 [Vitis vinifera]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/290 (83%), Positives = 256/290 (88%), Gaps = 14/290 (4%)

Query: 1   MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVL------LG 54
           MYRERG G SKSE+V GP+DRKRINDALDK LE+SSPSTS+  ++ KD   L       G
Sbjct: 1   MYRERGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSKG-LSSKDKERLSVPSTSAG 59

Query: 55  KHPADHQRDSRSASLSKNHASDEESETDSEESDVSGSEGDDTSWISWFCNLRGNEFFCEV 114
           K   DH RD+R+ASL KN  SDEESETDSEESDVSGS+GDDTSWISWFCNLRGNEFFCEV
Sbjct: 60  KSQLDH-RDTRAASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEV 118

Query: 115 DDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHA 174
           DD+YIQDDFNLCGLS QVPYYDYALDLILDVESSH      EQNELVESAAEMLYGLIH 
Sbjct: 119 DDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSH------EQNELVESAAEMLYGLIHV 172

Query: 175 RYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYY 234
           RYILT+KGM+AML+KYK+YDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCP+CEDIYY
Sbjct: 173 RYILTSKGMSAMLEKYKSYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYY 232

Query: 235 PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
           PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA QSY PRVFGFKIHKP
Sbjct: 233 PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAAQSYVPRVFGFKIHKP 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2152002	287	CKB1 "casein kinase II beta ch	0.968	0.958	0.726	5.3e-111
TAIR|locus:2129316	282	CKB2 "casein kinase II beta ch	0.971	0.978	0.727	1.1e-110
TAIR|locus:2042431	283	CKB4 "casein kinase II beta su	0.943	0.946	0.707	2.7e-107
TAIR|locus:2081937	276	CKB3 "casein kinase II beta ch	0.954	0.981	0.667	2.9e-103
UNIPROTKB|P67869	215	CSNK2B "Casein kinase II subun	0.651	0.860	0.594	1.3e-61
UNIPROTKB|P67868	215	CSNK2B "Casein kinase II subun	0.651	0.860	0.594	1.3e-61
UNIPROTKB|P67870	215	CSNK2B "Casein kinase II subun	0.651	0.860	0.594	1.3e-61
UNIPROTKB|Q5SRQ6	234	CSNK2B "Casein kinase II subun	0.651	0.790	0.594	1.3e-61
UNIPROTKB|K7GQK6	235	CSNK2B "Casein kinase II subun	0.651	0.787	0.594	1.3e-61
UNIPROTKB|P67872	215	CSNK2B "Casein kinase II subun	0.651	0.860	0.594	1.3e-61

TAIR|locus:2152002 CKB1 "casein kinase II beta chain 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 215/296 (72%), Positives = 231/296 (78%)

Query:     1 MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSV--------- 51
             MYR+RG   S+ EVV    DRKRINDAL    ER SPSTSR  +NGK             
Sbjct:     1 MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQ-VNGKGKGTVTAATTTAN 51

Query:    52 LLGKHPADH--QRDSRSASLSKNHAXXXXXXXXXXXXXXXXXXXXX-XXWISWFCNLRGN 108
             L+GK  +++   RDSRSASLSKN+                         WISWFCNLRGN
Sbjct:    52 LIGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGN 111

Query:   109 EFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEML 168
             EFFCEVDDDYIQDDFNLCGLS  VPYY+YALDLILDVESS GEMFTEEQNEL+ESAAEML
Sbjct:   112 EFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEML 171

Query:   169 YGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPR 228
             YGLIHARYILT+KG+AAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCP+
Sbjct:   172 YGLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPK 231

Query:   229 CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
             CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP KA Q+Y  RVFGFK+HKP
Sbjct:   232 CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPAKATQNYVQRVFGFKLHKP 287

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IGI;IDA

GO:0071900 "regulation of protein serine/threonine kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2129316 CKB2 "casein kinase II beta chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 211/290 (72%), Positives = 228/290 (78%)

Query:     1 MYRERGAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGK----DMSVLLGKH 56
             MYRERG  GSKSEVV    DRKRIN+  D    R S S S+  +NGK      SVL+GK 
Sbjct:     1 MYRERGMVGSKSEVV----DRKRINEIHDN---RPSHSMSQP-VNGKGKVTSTSVLMGKQ 52

Query:    57 PADHQRDSRSASLSKNHAXXXXXXXXXXXXXXXXXXXXX--XXWISWFCNLRGNEFFCEV 114
                 +  SRS S+SK +                          WISWFCNLRGNEFFCEV
Sbjct:    53 QLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCEV 112

Query:   115 DDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHA 174
             DDDYIQDDFNLCGLS QVPYYDYALDLILDVESSHGEMFTEEQNEL+ESAAEMLYG+IHA
Sbjct:   113 DDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMIHA 172

Query:   175 RYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYY 234
             R+ILT+KG+A+MLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCP+CED+YY
Sbjct:   173 RFILTSKGLASMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCEDVYY 232

Query:   235 PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
             PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKA QSY  RVFGFK+HKP
Sbjct:   233 PRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYTQRVFGFKLHKP 282

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISS

TAIR|locus:2042431 CKB4 "casein kinase II beta subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 196/277 (70%), Positives = 220/277 (79%)

Query:     6 GAGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADHQRDSR 65
             G G S+SE++ G +DRKRINDALDK L++SSPSTSR     KD   +     A  Q  SR
Sbjct:    13 GGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRV-FTSKDKDSVPSTSTAKSQLHSR 71

Query:    66 SASLSKNHAXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNL 125
             S  +  +                         WISWFCNLRGNEFFCEVD+DYIQDDFNL
Sbjct:    72 SPDVESD--------TDSEGSDVSGSEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNL 123

Query:   126 CGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAA 185
             CGLSGQVPYYDYALDLILDVESS+G+MFTEEQ+E+VESAAEMLYGLIH RYILTTKGMAA
Sbjct:   124 CGLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLYGLIHVRYILTTKGMAA 183

Query:   186 MLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDG 245
             M++KYKNYDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCP+CEDIYYPRSKYQGNIDG
Sbjct:   184 MMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDG 243

Query:   246 AYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIH 282
             AYFGTTFPHLFLM YG++KPQK  Q+Y P++FGFK+H
Sbjct:   244 AYFGTTFPHLFLMAYGNMKPQKPAQNYVPKIFGFKVH 280

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2081937 CKB3 "casein kinase II beta chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 193/289 (66%), Positives = 224/289 (77%)

Query:     1 MYRERGAGG----SKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTI-NGKDMSVLLGK 55
             MY+ER  GG    S+SE++ G +DRKRINDAL+K+LE+SS ST+ + + + KD       
Sbjct:     1 MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKD------- 53

Query:    56 HPADHQRDSRSASLSKNHAXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVD 115
                   +D  S + +K                          WISWFCNLRGN+FFCEVD
Sbjct:    54 ------KDPFSFTSTKTQLPDVESETDSEGSDVSGSEGDDTSWISWFCNLRGNDFFCEVD 107

Query:   116 DDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHAR 175
             +DYIQDDFNLCGLSGQVPYYDYALDLILDV++S+ EMFT+EQ+E+VESAAEMLYGLIH R
Sbjct:   108 EDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLIHVR 167

Query:   176 YILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYP 235
             YILTTKGMAAM +KYKN DFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCP+CEDI YP
Sbjct:   168 YILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDISYP 227

Query:   236 RSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP 284
             RSK+QGNIDGAYFGTTFPHLFLMTYG+LKPQK  QSY P++FGFK+HKP
Sbjct:   228 RSKFQGNIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP 276

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008134 "transcription factor binding" evidence=IDA

UNIPROTKB|P67869 CSNK2B "Casein kinase II subunit beta" [Gallus gallus (taxid:9031)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 110/185 (59%), Positives = 137/185 (74%)

Query:    98 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
             WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
             ++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVF 277
               + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++    + PR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   278 GFKIH 282
             GFKIH
Sbjct:   189 GFKIH 193

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISS

UNIPROTKB|P67868 CSNK2B "Casein kinase II subunit beta" [Bos taurus (taxid:9913)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 110/185 (59%), Positives = 137/185 (74%)

Query:    98 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
             WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
             ++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVF 277
               + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++    + PR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   278 GFKIH 282
             GFKIH
Sbjct:   189 GFKIH 193

GO:0031519 "PcG protein complex" evidence=ISS

GO:0061154 "endothelial tube morphogenesis" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|P67870 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 110/185 (59%), Positives = 137/185 (74%)

Query:    98 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
             WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
             ++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVF 277
               + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++    + PR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   278 GFKIH 282
             GFKIH
Sbjct:   189 GFKIH 193

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0005956 "protein kinase CK2 complex" evidence=NAS

GO:0019887 "protein kinase regulator activity" evidence=NAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0031519 "PcG protein complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0004674 "protein serine/threonine kinase activity" evidence=TAS

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IMP

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IDA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043623 "cellular protein complex assembly" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0051101 "regulation of DNA binding" evidence=NAS

GO:0061154 "endothelial tube morphogenesis" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=NAS

UNIPROTKB|Q5SRQ6 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 110/185 (59%), Positives = 137/185 (74%)

Query:    98 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
             WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:    28 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 87

Query:   158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
             ++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    88 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 147

Query:   218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVF 277
               + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++    + PR++
Sbjct:   148 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 207

Query:   278 GFKIH 282
             GFKIH
Sbjct:   208 GFKIH 212

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|K7GQK6 CSNK2B "Casein kinase II subunit beta" [Sus scrofa (taxid:9823)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 110/185 (59%), Positives = 137/185 (74%)

Query:    98 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
             WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:    29 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 88

Query:   158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
             ++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    89 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 148

Query:   218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVF 277
               + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++    + PR++
Sbjct:   149 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 208

Query:   278 GFKIH 282
             GFKIH
Sbjct:   209 GFKIH 213

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|P67872 CSNK2B "Casein kinase II subunit beta" [Sus scrofa (taxid:9823)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 110/185 (59%), Positives = 137/185 (74%)

Query:    98 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
             WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
             ++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVF 277
               + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++    + PR++
Sbjct:   129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188

Query:   278 GFKIH 282
             GFKIH
Sbjct:   189 GFKIH 193

GO:0031519 "PcG protein complex" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54PF1	CK2B_DICDI	No assigned EC number	0.5637	0.7042	0.7462	yes	no
P40228	CSK2B_ARATH	No assigned EC number	0.7905	0.9683	0.9581	yes	no
P40229	CSK2C_ARATH	No assigned EC number	0.7862	0.9718	0.9787	no	no
P67869	CSK2B_CHICK	No assigned EC number	0.5833	0.6760	0.8930	yes	no
P67868	CSK2B_BOVIN	No assigned EC number	0.5833	0.6760	0.8930	yes	no
P08182	CSK2B_DROME	No assigned EC number	0.5625	0.6760	0.8170	yes	no
P28548	CSK2B_CAEEL	No assigned EC number	0.5572	0.6725	0.8162	yes	no
Q91398	CSK2B_DANRE	No assigned EC number	0.5833	0.6760	0.8930	yes	no
O81275	CSK2D_ARATH	No assigned EC number	0.7509	0.9119	0.9384	no	no
P40232	CSK2B_SCHPO	No assigned EC number	0.5837	0.6408	0.7878	yes	no
O80507	CSK2E_ARATH	No assigned EC number	0.7814	0.9190	0.9222	no	no
P67870	CSK2B_HUMAN	No assigned EC number	0.5833	0.6760	0.8930	yes	no
P67871	CSK2B_MOUSE	No assigned EC number	0.5833	0.6760	0.8930	yes	no
P67872	CSK2B_PIG	No assigned EC number	0.5833	0.6760	0.8930	yes	no
P67873	CSK2B_RABIT	No assigned EC number	0.5833	0.6760	0.8930	yes	no
P67874	CSK2B_RAT	No assigned EC number	0.5833	0.6760	0.8930	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
smart01085	184	smart01085, CK_II_beta, Casein kinase II regulator	1e-119
pfam01214	183	pfam01214, CK_II_beta, Casein kinase II regulatory	1e-116
PTZ00396	251	PTZ00396, PTZ00396, Casein kinase II subunit beta;	1e-104
COG5041	242	COG5041, SKB2, Casein kinase II, beta subunit [Sig	2e-88

>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit

 Score =  339 bits (871), Expect = e-119
 Identities = 117/184 (63%), Positives = 144/184 (78%)

Query: 97  SWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEE 156
           SWI WFC+L+GNEFFCEVD+D+I+DDFNL GL+ +VP Y  ALDLILD+E          
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDFIEDDFNLTGLNSEVPNYREALDLILDLEPDDDLDEDAS 60

Query: 157 QNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDI 216
           Q  L+ES+AE+LYGLIHARYILT +G+A ML+KYK  DFG CPRV+C GQP LPVG SD+
Sbjct: 61  QKSLIESSAELLYGLIHARYILTPRGLALMLEKYKRGDFGTCPRVFCNGQPLLPVGLSDV 120

Query: 217 PRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRV 276
           P  STVK+YCPRC+D+Y P+S    NIDGA+FGT+FPHLFLMTY  L P+K  + Y P++
Sbjct: 121 PGKSTVKLYCPRCQDVYTPKSSRHANIDGAFFGTSFPHLFLMTYPELIPKKPKEQYIPKI 180

Query: 277 FGFK 280
           +GFK
Sbjct: 181 YGFK 184

Length = 184

>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit

 Score =  330 bits (849), Expect = e-116
 Identities = 117/184 (63%), Positives = 140/184 (76%), Gaps = 1/184 (0%)

Query: 97  SWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEE 156
           SWI WFC+L+GNEFFCEVD+DYI+DDFNL GLS +VP Y  ALDLILD E    E   ++
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDYIEDDFNLYGLSEEVPNYKEALDLILDKEPES-ESLDDD 59

Query: 157 QNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDI 216
           + E +E  AE LYGLIHARYILT KG+A M +KYK  +FG CPRV C GQP LP+G SD+
Sbjct: 60  KKEEIEKEAEKLYGLIHARYILTPKGLAQMKEKYKEGEFGTCPRVLCNGQPLLPIGLSDV 119

Query: 217 PRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRV 276
           P  STVK+YCPRC+D+Y P+S    NIDGAYFGT+FPH+FLMTY  L P+   + Y PR+
Sbjct: 120 PGESTVKLYCPRCQDVYNPKSSRHSNIDGAYFGTSFPHMFLMTYPELVPKPPAKQYIPRI 179

Query: 277 FGFK 280
           FGFK
Sbjct: 180 FGFK 183

Length = 183

>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional

 Score =  304 bits (780), Expect = e-104
 Identities = 108/207 (52%), Positives = 141/207 (68%), Gaps = 1/207 (0%)

Query: 78  ESETDSEESDVS-GSEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYD 136
           + E   EES  S     +   WI WFC+L+G+EF CEVD+D+I+D+FNL GL  + P+Y+
Sbjct: 2   DMEFSDEESSYSEEPSEESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFPFYN 61

Query: 137 YALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFG 196
            ALD+ILD E    E   +EQ   V   A  LYGLIHAR+I T KG+A M +KY    FG
Sbjct: 62  EALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLIHARFITTPKGLALMREKYLQGKFG 121

Query: 197 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLF 256
            CPRV C GQ  LP+G SD+ ++S VK+YCPRC+++Y+P+     +IDGA+FGT+FPHLF
Sbjct: 122 HCPRVLCEGQNVLPIGLSDVLKTSRVKVYCPRCQEVYHPKKSSLLDIDGAFFGTSFPHLF 181

Query: 257 LMTYGHLKPQKAVQSYAPRVFGFKIHK 283
           LMTY  L P K  Q Y P++FGFK+HK
Sbjct: 182 LMTYPELIPTKPPQYYVPKIFGFKVHK 208

Length = 251

>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

 Score =  263 bits (673), Expect = 2e-88
 Identities = 107/210 (50%), Positives = 146/210 (69%), Gaps = 3/210 (1%)

Query: 75  SDEESETDSEE-SDVSGSEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVP 133
            +   E DS+  SD      +   WI WFC+ +GNE+FCEV +++I+D FNL GLS +VP
Sbjct: 2   MENSLEDDSDNLSDDDSDSSEYDEWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVP 61

Query: 134 YYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNY 193
           +Y   LDLILD  +        ++ +++E +A  LYGLIHARYI+T  G+ AML+KYK+ 
Sbjct: 62  HYSEVLDLILDKLAP--SNLENDEVDIIEESARQLYGLIHARYIITKSGLQAMLEKYKSR 119

Query: 194 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFP 253
           +FG CPRVYC GQ  LPVG SDIP  S+VK+YCP CED+Y P+S    +IDGA+FGT+FP
Sbjct: 120 EFGACPRVYCNGQQVLPVGLSDIPGKSSVKLYCPSCEDLYLPKSSRHQSIDGAFFGTSFP 179

Query: 254 HLFLMTYGHLKPQKAVQSYAPRVFGFKIHK 283
           H+FL T+  L P+++ + Y PR+FGF+IH 
Sbjct: 180 HMFLQTFPELFPKRSCERYIPRIFGFRIHS 209

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
KOG3092	216	consensus Casein kinase II, beta subunit [Signal t	100.0
PTZ00396	251	Casein kinase II subunit beta; Provisional	100.0
PF01214	184	CK_II_beta: Casein kinase II regulatory subunit; I	100.0
COG5041	242	SKB2 Casein kinase II, beta subunit [Signal transd	100.0

>KOG3092 consensus Casein kinase II, beta subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.5e-96  Score=650.62  Aligned_cols=193  Identities=69%  Similarity=1.287  Sum_probs=186.1

Q ss_pred             CCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHhcc
Q 037001           92 EGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGL  171 (284)
Q Consensus        92 ~~e~~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~AL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGL  171 (284)
                      ++++.+||+|||+++|||||||||+|||+|+|||+||+.+||+|++||++|||+++.++.++.+++.++||++|++||||
T Consensus         3 ~see~sWI~wFc~~~GnEffceVdeeyIqD~FNltgL~~~Vp~y~~ald~ILD~~~~~~~e~~~~~~~~iE~aae~LYGL   82 (216)
T KOG3092|consen    3 SSEEVSWISWFCGLRGNEFFCEVDEEYIQDRFNLTGLSEQVPNYRQALDLILDLEPDDELEDNAEQSELIESAAEMLYGL   82 (216)
T ss_pred             cccccchHHHHhcCCCCeeeEecCHHHhhhhhccccccccCchHHHHHHHhhcCCCCcccccchhHHHHHHHHHHHHHHh
Confidence            44566799999999999999999999999999999999999999999999999998887777777789999999999999


Q ss_pred             cccceeeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 037001          172 IHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTT  251 (284)
Q Consensus       172 IHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGts  251 (284)
                      ||||||||.+||++|++||++++||+||||+|++|+|||+||||+|++++||||||+|+|||.|+|+++.+|||||||||
T Consensus        83 IHaRYIlT~~Gl~~M~eKy~~~dFG~CPRV~C~~q~~LPvGLsDipg~~~VklYCP~C~dvY~P~ssr~~~iDGa~fGts  162 (216)
T KOG3092|consen   83 IHARYILTNRGLAAMLEKYKNGDFGRCPRVYCCGQPVLPVGLSDIPGKSTVKLYCPSCEDVYIPKSSRHGNIDGAYFGTS  162 (216)
T ss_pred             hhheeeechHHHHHHHHHHhcCCCCcCCcccccCCccccccccCCCCcceEEEeCCCcccccccccccccccccchhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHhCCCCCCCCCCCcceeeeeeeecCC
Q 037001          252 FPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP  284 (284)
Q Consensus       252 FpHlFl~~yp~l~p~~~~~~YvPrIFGFKIh~~  284 (284)
                      |||||||+||++.|+++.++|||||||||||+.
T Consensus       163 FPhmff~~~p~l~P~r~~~~yvPriyGFkih~~  195 (216)
T KOG3092|consen  163 FPHMFFMTHPELRPKRPTEQYVPRIYGFKIHKP  195 (216)
T ss_pred             CchhHHHhccccCCCcchhhhcchheeeeeCch
Confidence            999999999999999999999999999999973

>PTZ00396 Casein kinase II subunit beta; Provisional

Probab=100.00  E-value=3.4e-90  Score=633.27  Aligned_cols=193  Identities=53%  Similarity=1.046  Sum_probs=182.8

Q ss_pred             CCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHhcc
Q 037001           92 EGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGL  171 (284)
Q Consensus        92 ~~e~~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~AL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGL  171 (284)
                      +.++.+||+|||+++||+|||+||+|||+|+||||||+.+||||++||+||||.+..+++..+++..+.++++|++||||
T Consensus        17 s~~~~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGL   96 (251)
T PTZ00396         17 SEESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFPFYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGL   96 (251)
T ss_pred             CCCcCcHHHHHhCCCCCeeEEEeCHHHhcCcchhhCccccccCHHHHHHHHcCCCCCccccccchhHHHHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999999999999999999987665555566778899999999999


Q ss_pred             cccceeeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 037001          172 IHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTT  251 (284)
Q Consensus       172 IHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGts  251 (284)
                      ||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||+|||+|+|||+|++.++..|||||||||
T Consensus        97 IHARyI~T~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSd~~g~~~VKlyCP~C~DvY~p~s~~~~~iDGA~FGts  176 (251)
T PTZ00396         97 IHARFITTPKGLALMREKYLQGKFGHCPRVLCEGQNVLPIGLSDVLKTSRVKVYCPRCQEVYHPKKSSLLDIDGAFFGTS  176 (251)
T ss_pred             HhHhHhcCHHHHHHHHHHhhCCCCCCCCCccCCCCcccccccCCCcCcCceeEeCCCchhhcCCCCccccccccceecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999877668999999999


Q ss_pred             hhhHHHHHhCCCCCCCCCCCcceeeeeeeecCC
Q 037001          252 FPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHKP  284 (284)
Q Consensus       252 FpHlFl~~yp~l~p~~~~~~YvPrIFGFKIh~~  284 (284)
                      |||||||+||++.|+++.++|+|||||||||++
T Consensus       177 Fph~fl~~~p~l~p~~~~~~yvPrifGFki~~~  209 (251)
T PTZ00396        177 FPHLFLMTYPELIPTKPPQYYVPKIFGFKVHKK  209 (251)
T ss_pred             HHHHHHHhccccCCCCCCCccCCeeeeEEeccc
Confidence            999999999999999999999999999999963

>PF01214 CK_II_beta: Casein kinase II regulatory subunit; InterPro: IPR000704 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=6.1e-88  Score=594.38  Aligned_cols=184  Identities=64%  Similarity=1.219  Sum_probs=153.7

Q ss_pred             chHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHhcccccce
Q 037001           97 SWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARY  176 (284)
Q Consensus        97 sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~AL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGLIHARY  176 (284)
                      +||+|||+++||+||||||+|||+|+|||+||+++||+|++||++|||.+..+++..++++.+.++++|++|||||||||
T Consensus         1 sWI~~F~~~~~~~~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaRy   80 (184)
T PF01214_consen    1 SWIDWFCSLKGNEFFCEVDEDYIEDSFNLYGLSSQVPNYDEALDMILDKEPDEDEESDDESDDEIEKSAEMLYGLIHARY   80 (184)
T ss_dssp             -HHHHHHHSTTTTT-----HHHHHSGGGGTTGGGTSTTHHHHHHHHTT----TTTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhCCCCCeEEEEeCHHHHhCcchhcChhhccccHHHHHHHHcCCCcccchhccchhHHHHHHHHHHHHhhhHHHH
Confidence            69999999999999999999999999999999999999999999999998776556666778889999999999999999


Q ss_pred             eeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCchhhHH
Q 037001          177 ILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLF  256 (284)
Q Consensus       177 IlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGtsFpHlF  256 (284)
                      |+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++.+||||||||||||||
T Consensus        81 I~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~lLPiGlsd~~g~~~vKlyCP~C~dvY~p~~~~~~~iDGA~FG~sFph~f  160 (184)
T PF01214_consen   81 ILTPRGLEQMKEKYEQGDFGRCPRVYCNGQPLLPIGLSDTPGESTVKLYCPRCKDVYHPPSSRHSNIDGAYFGPSFPHLF  160 (184)
T ss_dssp             TTSHHHHHHHHHHHHTTTT-B-SBGGGTT-B-EEEBS-SSTTS-BBEEEETTTTEEE--SSGGGTTSBGGGTTSSHHHHH
T ss_pred             hhcHHHHHHHHHhhcCCcCCcCCcccCCCCceeCccCCCCCCccceeEECCCCccccCCCCccccceeccccCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888888999999999999999


Q ss_pred             HHHhCCCCCCCCCCCcceeeeeee
Q 037001          257 LMTYGHLKPQKAVQSYAPRVFGFK  280 (284)
Q Consensus       257 l~~yp~l~p~~~~~~YvPrIFGFK  280 (284)
                      +|+||++.|+.+.++|+|||||||
T Consensus       161 ~~~~p~~~~~~~~~~y~PrifGFk  184 (184)
T PF01214_consen  161 LMTYPELIPSPPPKPYVPRIFGFK  184 (184)
T ss_dssp             HHH-GGGS-SS-SS----ECTTCE
T ss_pred             HHHCccccCCCCCCccCCcccccC
Confidence            999999999999999999999998

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Casein kinase, a ubiquitous, well-conserved protein kinase involved in cell metabolism and differentiation, is characterised by its preference for Ser or Thr in acidic stretches of amino acids. The enzyme is a tetramer of 2 alpha- and 2 beta-subunits [, ]. However, some species (e.g., mammals) possess 2 related forms of the alpha-subunit (alpha and alpha'), while others (e.g., fungi) possess 2 related beta-subunits (beta and beta') []. The alpha-subunit is the catalytic unit and contains regions characteristic of serine/threonine protein kinases. The beta-subunit is believed to be regulatory, possessing an N-terminal auto-phosphorylation site, an internal acidic domain, and a potential metal-binding motif []. The beta subunit is a highly conserved protein of about 25kDa that contains, in its central section, a cysteine-rich motif, CX(n)C, that could be involved in binding a metal such as zinc []. The mammalian beta-subunit gene promoter shares common features with those of other mammalian protein kinases and is closely related to the promoter of the regulatory subunit of cAMP-dependent protein kinase [].; GO: 0019887 protein kinase regulator activity, 0005956 protein kinase CK2 complex; PDB: 2R6M_B 1RQF_K 1DS5_G 1QF8_B 3EED_A 4DGL_A 1JWH_D.

>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

Probab=100.00  E-value=1.5e-84  Score=580.81  Aligned_cols=185  Identities=55%  Similarity=1.139  Sum_probs=176.7

Q ss_pred             chHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHhcccccce
Q 037001           97 SWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHARY  176 (284)
Q Consensus        97 sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~AL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGLIHARY  176 (284)
                      .||+|||+++||||||+||++||+|.|||+||+..||+|.+||++|||...+.  .+.+.+-+.||.+|+.|||||||||
T Consensus        25 ~Wi~~F~~rkg~eyfc~V~~efIeDrFNltgL~~~Vp~y~~~ldlILD~~~~~--~~e~~~~d~iE~sa~~LYgLIHaRy  102 (242)
T COG5041          25 EWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVPHYSEVLDLILDKLAPS--NLENDEVDIIEESARQLYGLIHARY  102 (242)
T ss_pred             HHHHHHHcCCCCeeeeeCCHHHHHhhhhccchhhccchHHHHHHHHHhccCCc--chhhhhhHHHHHHHHHHHHHHHhhh
Confidence            79999999999999999999999999999999999999999999999986544  2333445789999999999999999


Q ss_pred             eeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCchhhHH
Q 037001          177 ILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLF  256 (284)
Q Consensus       177 IlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGtsFpHlF  256 (284)
                      |+|..||++|++||+.++||+||||+||+|+|||+||||+||+++||||||+|.|||.|+|+++..||||||||||||||
T Consensus       103 IiT~~GL~~m~eKy~~~efG~CPRv~Cn~~~vLPvGLsDi~g~~~vkLyCpsC~dlY~p~Ssr~~~iDGa~fGtSFPh~f  182 (242)
T COG5041         103 IITKSGLQAMLEKYKSREFGACPRVYCNGQQVLPVGLSDIPGKSSVKLYCPSCEDLYLPKSSRHQSIDGAFFGTSFPHMF  182 (242)
T ss_pred             eeeHHHHHHHHHHHhhcccCCCCcccccCcceeccccccCCCCceeEEecCchhhhcCcccccccccccchhccCCchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCcceeeeeeeecC
Q 037001          257 LMTYGHLKPQKAVQSYAPRVFGFKIHK  283 (284)
Q Consensus       257 l~~yp~l~p~~~~~~YvPrIFGFKIh~  283 (284)
                      |++||++.|+++.+.|+|||||||||+
T Consensus       183 ~~~~pel~p~~~~e~YiprIfGfri~~  209 (242)
T COG5041         183 LQTFPELFPKRSCERYIPRIFGFRIHS  209 (242)
T ss_pred             HHhchhhcCCcchhhhcceeeeeEeeh
Confidence            999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	284
1jwh_C	215	Crystal Structure Of Human Protein Kinase Ck2 Holoe		3e-66
3eed_A	193	Crystal Structure Of Human Protein Kinase Ck2 Regul		8e-66
1rqf_A	184	Structure Of Ck2 Beta Subunit Crystallized In The P		3e-60
1qf8_A	182	Truncated Form Of Casein Kinase Ii Beta Subunit (2-		3e-57

>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 215

Iteration: 1
 Score =  248 bits (633), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 110/185 (59%), Positives = 137/185 (74%)
Query: 98  WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
           WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
           ++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVF 277
             + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++    + PR++
Sbjct: 129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188
Query: 278 GFKIH 282
           GFKIH
Sbjct: 189 GFKIH 193

>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory Subunit (Ck2beta; Mutant 1-193) Length = 193

Iteration: 1
 Score =  246 bits (629), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 110/185 (59%), Positives = 137/185 (74%)
Query: 98  WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
           WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
           ++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQSYAPRVF 277
             + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++    + PR++
Sbjct: 129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188
Query: 278 GFKIH 282
           GFKIH
Sbjct: 189 GFKIH 193

>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence Of A P21waf1 Peptide Length = 184

Iteration: 1
 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 127/170 (74%)
Query: 98  WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
           WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 15  WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 74
Query: 158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
           ++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 75  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 134
Query: 218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 267
             + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++
Sbjct: 135 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 184

>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182) From Homo Sapiens Length = 182

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 122/170 (71%)
Query: 98  WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQ 157
           WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEELEDNPNQ 68
Query: 158 NELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 217
           ++L+E AAE LYGLIHARYILT +G+A  L+KY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEXLYGLIHARYILTNRGIAQXLEKYQQGDFGYCPRVYCENQPXLPIGLSDIP 128
Query: 218 RSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 267
             + VK+YCP+C D+Y P+S    + DGAYFGT FPH     +   +P++
Sbjct: 129 GEAXVKLYCPKCXDVYTPKSSRHHHTDGAYFGTGFPHXLFXVHPEYRPKR 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	1e-113
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	1e-103

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Length = 215

 Score =  324 bits (831), Expect = e-113
 Identities = 112/193 (58%), Positives = 141/193 (73%)

Query: 91  SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 150
           S  ++ SWISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 151 EMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLP 210
                 Q++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 211 VGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQ 270
           +G SDIP  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Query: 271 SYAPRVFGFKIHK 283
            + PR++GFKIH 
Sbjct: 182 QFVPRLYGFKIHP 194

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Length = 182

 Score =  297 bits (763), Expect = e-103
 Identities = 105/180 (58%), Positives = 131/180 (72%)

Query: 91  SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHG 150
           S  ++ SWISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 151 EMFTEEQNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLP 210
                 Q++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 211 VGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAVQ 270
           +G SDIP  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++   
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPAN 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	100.0
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	100.0

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*

Probab=100.00  E-value=8.8e-95  Score=649.42  Aligned_cols=193  Identities=58%  Similarity=1.125  Sum_probs=174.8

Q ss_pred             CCCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHhc
Q 037001           91 SEGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYG  170 (284)
Q Consensus        91 s~~e~~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~AL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYG  170 (284)
                      |++++.+||+|||+++|||||||||+|||+|+|||+||+++||+|++||+||||.+++++..+++++.+.|+++|++|||
T Consensus         2 s~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYG   81 (215)
T 4dgl_A            2 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYG   81 (215)
T ss_dssp             ------CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhh
Confidence            34567799999999999999999999999999999999999999999999999998765444445567889999999999


Q ss_pred             ccccceeeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCC
Q 037001          171 LIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGT  250 (284)
Q Consensus       171 LIHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGt  250 (284)
                      |||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++++||||||||
T Consensus        82 LIHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGAyFGt  161 (215)
T 4dgl_A           82 LIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGT  161 (215)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGGGTTT
T ss_pred             hhhHhheecHHHHHHHHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccceecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             chhhHHHHHhCCCCCCCCCCCcceeeeeeeecC
Q 037001          251 TFPHLFLMTYGHLKPQKAVQSYAPRVFGFKIHK  283 (284)
Q Consensus       251 sFpHlFl~~yp~l~p~~~~~~YvPrIFGFKIh~  283 (284)
                      ||||||||+||++.|+++.++|+|||||||||+
T Consensus       162 sFph~f~~~~p~l~p~~~~~~yvPrifGFkih~  194 (215)
T 4dgl_A          162 GFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHP  194 (215)
T ss_dssp             THHHHHHHHCGGGCCCSCSCCCCCEETTEEECT
T ss_pred             cchHHHHHHcccccCCCCCCcccCeEeEEEecH
Confidence            999999999999999999999999999999996

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A

Probab=100.00  E-value=1.4e-87  Score=590.48  Aligned_cols=179  Identities=58%  Similarity=1.114  Sum_probs=162.2

Q ss_pred             CCCCCchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHhcc
Q 037001           92 EGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGL  171 (284)
Q Consensus        92 ~~e~~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~AL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGL  171 (284)
                      ++++.+||+|||+++|||||||||+|||+|+|||+||+++||||++||+||||.++.+++.+++++.+.++++|++||||
T Consensus         3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL   82 (182)
T 1qf8_A            3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL   82 (182)
T ss_dssp             ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred             CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence            44667899999999999999999999999999999999999999999999999987665544555678899999999999


Q ss_pred             cccceeeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 037001          172 IHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTT  251 (284)
Q Consensus       172 IHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGts  251 (284)
                      ||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++.+|||||||||
T Consensus        83 IHaRyIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGAyFGts  162 (182)
T 1qf8_A           83 IHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTG  162 (182)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSS
T ss_pred             hhhhhcccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccceecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988878999999999


Q ss_pred             hhhHHHHHhCCCCCCCCCC
Q 037001          252 FPHLFLMTYGHLKPQKAVQ  270 (284)
Q Consensus       252 FpHlFl~~yp~l~p~~~~~  270 (284)
                      |||||||+||++.|+++.+
T Consensus       163 Fph~f~~~~p~l~p~~~~~  181 (182)
T 1qf8_A          163 FPHMLFMVHPEYRPKRPAN  181 (182)
T ss_dssp             HHHHHHHHCGGGSCSCC--
T ss_pred             hHHHHHHHcccccCCCCCC
Confidence            9999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	284
d1qf8a_	173	g.41.4.1 (A:) Casein kinase II beta subunit {Human	1e-102

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  294 bits (753), Expect = e-102
 Identities = 104/171 (60%), Positives = 128/171 (74%)

Query: 97  SWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEE 156
           SWISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          
Sbjct: 2   SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPN 61

Query: 157 QNELVESAAEMLYGLIHARYILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDI 216
           Q++L+E AAEMLYGLIHARYILT +G+A ML+KY+  DFG CPRVYC  QP LP+G SDI
Sbjct: 62  QSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDI 121

Query: 217 PRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 267
           P  + VK+YCP+C D+Y P+S    + DGAYFGT FPH+  M +   +P++
Sbjct: 122 PGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	284
d1qf8a_	173	Casein kinase II beta subunit {Human (Homo sapiens	100.0

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-85  Score=568.75  Aligned_cols=173  Identities=60%  Similarity=1.140  Sum_probs=161.1

Q ss_pred             CchHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHhcccccc
Q 037001           96 TSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLIHAR  175 (284)
Q Consensus        96 ~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~AL~~ILd~~~~~~~~~~~~~~~~ie~~A~~LYGLIHAR  175 (284)
                      .|||+|||+++||+||||||+|||+|+|||+||+++||||++||+||||.+++.+...+..+.+.++++|+.||||||||
T Consensus         1 ~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaR   80 (173)
T d1qf8a_           1 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHAR   80 (173)
T ss_dssp             CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhCCCCCeEEEEeCHHHHcCcchhcCchhccccHHHHHHHHhccCCChhhhhhhhhhHHHHHHHHHHHHHhhhh
Confidence            48999999999999999999999999999999999999999999999998876654444556677999999999999999


Q ss_pred             eeeChHHHHHHHHhhccCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCchhhH
Q 037001          176 YILTTKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHL  255 (284)
Q Consensus       176 YIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGtsFpHl  255 (284)
                      ||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||+|||+|+|||+|++.++++|||||||||||||
T Consensus        81 yI~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~~LPiGlSd~~g~~~vKlyCP~C~dvY~p~s~~~~~iDGA~FG~sFph~  160 (173)
T d1qf8a_          81 YILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHM  160 (173)
T ss_dssp             HTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSSHHHH
T ss_pred             eeecHhHHHHHHHHHhCCCCCCCCCcccCCCcccccccCCCCCcCcceEECCChhhccCCCCcccCcccchhccCchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHhCCCCCCCC
Q 037001          256 FLMTYGHLKPQKA  268 (284)
Q Consensus       256 Fl~~yp~l~p~~~  268 (284)
                      |||+||+++|++|
T Consensus       161 fl~~yp~l~P~~P  173 (173)
T d1qf8a_         161 LFMVHPEYRPKRP  173 (173)
T ss_dssp             HHHHCGGGSCSCC
T ss_pred             HHHHCcccCCCCC
Confidence            9999999999875