Citrus Sinensis ID: 037040

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
TIGNIISHLLYFHLIMERTASIKLVALLAVLFCFVNATKSRGVPTVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA
cHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccEEEEEEEEEccccEEEEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEEEccEEEEcccccccccEEEEEccccccccccccccccccccccccEEEEEEEEcc
ccHHHHHHHHHHHHHHccccEEEEcHHHHHHHccccccccEHHHEEEEEEEcEcccccccEEEEEEEccccEEEEEEEEccccEEcEEEEEccccccccccccccEcccccccccccccccccccEccccEEccccEEEEEEEEEEcccEcccccEccccEEEEccccccccccccccHHHHcccccccEEEEcEEcc
TIGNIISHLLYFHLIMERTASIKLVALLAVLFCFVnatksrgvpTVKAVAYVISkwgpkgilhfkqegdgpttikGTLYYlsqgahgfhIHVYGDmahfcqstgdhfnpfrkhhggpedwirhagdlgniyvgfdgkakinivdkhkliplvgpnsiigrsvvihdkhddlgkvgnyhskkngnagdkiacgviglqa
TIGNIISHLLYFHLIMERTASIKLVALLAVLFCFVnatksrgvptVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGnyhskkngnagdkiACGVIGLQA
TIGNIISHLLYFHLIMERTASIKlvallavlFCFVNATKSRGVPTVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA
**GNIISHLLYFHLIMERTASIKLVALLAVLFCFVNATKSRGVPTVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYH******AGDKIACGVIG***
*IGNIISHLLYFHLIMERTASIKLVALLAVLFCFVNA******PT**AVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA
TIGNIISHLLYFHLIMERTASIKLVALLAVLFCFVNATKSRGVPTVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA
TIGNIISHLLYFHLIMERTASIKLVALLAVLFCFVNATKSRGVPTVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSK****AGDKIACGVIGLQA
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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TIGNIISHLLYFHLIMERTASIKLVALLAVLFCFVNATKSRGVPTVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query198 2.2.26 [Sep-21-2011]
P23345152 Superoxide dismutase [Cu- N/A no 0.757 0.986 0.585 8e-45
Q8L5E0152 Superoxide dismutase [Cu- N/A no 0.762 0.993 0.594 2e-44
Q9SQL5152 Superoxide dismutase [Cu- N/A no 0.762 0.993 0.581 2e-44
P23346152 Superoxide dismutase [Cu- N/A no 0.757 0.986 0.578 6e-44
P93258152 Superoxide dismutase [Cu- N/A no 0.757 0.986 0.572 1e-43
Q0DRV6152 Superoxide dismutase [Cu- yes no 0.762 0.993 0.581 2e-43
A2XGP6152 Superoxide dismutase [Cu- N/A no 0.762 0.993 0.581 2e-43
O65768152 Superoxide dismutase [Cu- N/A no 0.757 0.986 0.578 5e-43
P22233152 Superoxide dismutase [Cu- N/A no 0.757 0.986 0.559 6e-43
P27082152 Superoxide dismutase [Cu- N/A no 0.757 0.986 0.565 7e-43
>sp|P23345|SODC4_MAIZE Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2 Back     alignment and function desciption
 Score =  179 bits (455), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/152 (58%), Positives = 105/152 (69%), Gaps = 2/152 (1%)

Query: 46  VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGD 105
           VKAVA + S  G KG + F QEGDGPTT+ G++  L  G HGFH+H  GD  + C STG 
Sbjct: 2   VKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61

Query: 106 HFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 165
           H+NP  K HG PED  RHAGDLGN+  G DG A IN+ D    IPL GPNSIIGR+VV+H
Sbjct: 62  HYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQ--IPLTGPNSIIGRAVVVH 119

Query: 166 DKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 197
              DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct: 120 ADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151
Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
Zea mays (taxid: 4577)
EC: 1EC: .EC: 1EC: 5EC: .EC: 1EC: .EC: 1
>sp|Q8L5E0|ALL5B_OLEEU Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea GN=OLE5 PE=1 SV=2 Back     alignment and function description
>sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1 Back     alignment and function description
>sp|P23346|SODC5_MAIZE Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2 Back     alignment and function description
>sp|P93258|SODC1_MESCR Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1 Back     alignment and function description
>sp|Q0DRV6|SODC1_ORYSJ Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1 Back     alignment and function description
>sp|A2XGP6|SODC1_ORYSI Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2 Back     alignment and function description
>sp|O65768|SODC_CARPA Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1 Back     alignment and function description
>sp|P22233|SODC_SPIOL Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1 Back     alignment and function description
>sp|P27082|SODC_NICPL Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
13274150152 putative cytosolic CuZn-superoxide dismu 0.762 0.993 0.594 3e-44
224125448152 predicted protein [Populus trichocarpa] 0.762 0.993 0.594 4e-44
164654158152 copper/zinc-superoxide dismutase [Litchi 0.762 0.993 0.594 1e-43
162135925152 cytosolic copper/zinc-superoxide dismuta 0.762 0.993 0.594 1e-43
359375668152 Cu/Zn superoxide dismutase [Zoysia japon 0.757 0.986 0.592 1e-43
12744890152 Cu-Zn superoxide dismutase [Avicennia ma 0.752 0.980 0.596 1e-43
145388988152 Cu-Zn superoxide dismutase [Cenchrus ame 0.757 0.986 0.585 2e-43
169244549152 CuZn superoxide dismutase [Avicennia mar 0.752 0.980 0.589 2e-43
400532665152 CuZnSOD [Prunus persica] 0.757 0.986 0.605 2e-43
380875808152 cytosolic Cu/Zn superoxide dismutase [Tr 0.757 0.986 0.585 2e-43
>gi|13274150|emb|CAC33845.1| putative cytosolic CuZn-superoxide dismutase [Populus tremula x Populus tremuloides] gi|52313438|dbj|BAD51399.1| CuZn-superoxide dismutase [Populus alba x Populus tremula var. glandulosa] gi|52313440|dbj|BAD51400.1| CuZn-superoxide dismutase [Populus alba x Populus tremula var. glandulosa] Back     alignment and taxonomy information
 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/153 (59%), Positives = 108/153 (70%), Gaps = 2/153 (1%)

Query: 46  VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGD 105
           VKAVA + S  G KG ++F QEGDGPTT+ G+L  L  G HGFH+H  GD  + C STG 
Sbjct: 2   VKAVAVLNSSEGVKGTINFTQEGDGPTTVTGSLCGLKPGLHGFHVHALGDTTNGCMSTGP 61

Query: 106 HFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 165
           HFNP  K HG PED  RHAGDLGN+ VG DG A ++I+D    IPL GPNSI+GR+VV+H
Sbjct: 62  HFNPVGKEHGAPEDENRHAGDLGNVTVGDDGTATVSIIDNQ--IPLTGPNSIVGRAVVVH 119

Query: 166 DKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 198
              DDLGK G+  SK  GNAG ++ACGVIGLQ 
Sbjct: 120 ADPDDLGKGGHELSKSTGNAGGRVACGVIGLQG 152

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125448|ref|XP_002319589.1| predicted protein [Populus trichocarpa] gi|118488274|gb|ABK95956.1| unknown [Populus trichocarpa] gi|222857965|gb|EEE95512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|164654158|gb|ABY65355.1| copper/zinc-superoxide dismutase [Litchi chinensis] gi|436805717|gb|AGB58021.1| copper/zinc-superoxide dismutase [Litchi chinensis] Back     alignment and taxonomy information
>gi|162135925|gb|ABV79894.2| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|210111952|gb|ACJ07158.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|254031694|gb|ACT54525.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|257132934|gb|ACV42800.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|345018986|gb|ADK70175.2| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|345018988|gb|ADK70176.2| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|345106304|gb|AEN71837.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] Back     alignment and taxonomy information
>gi|359375668|gb|AEV43309.1| Cu/Zn superoxide dismutase [Zoysia japonica] Back     alignment and taxonomy information
>gi|12744890|gb|AAK06837.1|AF328859_1 Cu-Zn superoxide dismutase [Avicennia marina] Back     alignment and taxonomy information
>gi|145388988|gb|ABP65325.1| Cu-Zn superoxide dismutase [Cenchrus americanus] Back     alignment and taxonomy information
>gi|169244549|gb|ACA50531.1| CuZn superoxide dismutase [Avicennia marina] Back     alignment and taxonomy information
>gi|400532665|gb|AFP87312.1| CuZnSOD [Prunus persica] Back     alignment and taxonomy information
>gi|380875808|gb|AFF27607.1| cytosolic Cu/Zn superoxide dismutase [Triticum aestivum] gi|380875810|gb|AFF27608.1| cytosolic Cu/Zn superoxide dismutase [Triticum aestivum] gi|380875812|gb|AFF27609.1| cytosolic Cu/Zn superoxide dismutase [Triticum aestivum] gi|380875814|gb|AFF27610.1| cytosolic Cu/Zn superoxide dismutase [Triticum aestivum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
UNIPROTKB|Q0DRV6152 SODCC1 "Superoxide dismutase [ 0.757 0.986 0.585 2.8e-43
UNIPROTKB|P28757152 SODCC2 "Superoxide dismutase [ 0.757 0.986 0.565 3.2e-42
TAIR|locus:2025595152 CSD1 "copper/zinc superoxide d 0.752 0.980 0.569 2.6e-40
UNIPROTKB|P33431153 SOD1 "Superoxide dismutase [Cu 0.742 0.960 0.543 4.2e-40
UNIPROTKB|Q8HXP8154 SOD1 "Superoxide dismutase [Cu 0.747 0.961 0.522 4.3e-38
RGD|3731154 Sod1 "superoxide dismutase 1, 0.747 0.961 0.509 5.5e-38
MGI|MGI:98351154 Sod1 "superoxide dismutase 1, 0.747 0.961 0.516 8.9e-38
UNIPROTKB|Q8WNN6153 SOD1 "Superoxide dismutase [Cu 0.747 0.967 0.513 1.5e-37
UNIPROTKB|Q8HXP9154 SOD1 "Superoxide dismutase [Cu 0.747 0.961 0.516 1.5e-37
UNIPROTKB|Q8HXQ0154 SOD1 "Superoxide dismutase [Cu 0.752 0.967 0.493 1e-36
UNIPROTKB|Q0DRV6 SODCC1 "Superoxide dismutase [Cu-Zn] 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 89/152 (58%), Positives = 105/152 (69%)

Query:    46 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGD 105
             VKAV  + S    KG +HF QEGDGPTT+ G++  L  G HGFHIH  GD  + C STG 
Sbjct:     2 VKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGP 61

Query:   106 HFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 165
             H+NP  K HG PED  RHAGDLGN+  G DG A I++VD    IPL GPNSIIGR+VV+H
Sbjct:    62 HYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQ--IPLTGPNSIIGRAVVVH 119

Query:   166 DKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 197
                DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:   120 ADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151
GO:0004784 "superoxide dismutase activity" evidence=IBA
GO:0005507 "copper ion binding" evidence=IBA
GO:0008270 "zinc ion binding" evidence=IBA
GO:0019430 "removal of superoxide radicals" evidence=IBA
UNIPROTKB|P28757 SODCC2 "Superoxide dismutase [Cu-Zn] 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2025595 CSD1 "copper/zinc superoxide dismutase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P33431 SOD1 "Superoxide dismutase [Cu-Zn]" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP8 SOD1 "Superoxide dismutase [Cu-Zn]" [Callithrix jacchus (taxid:9483)] Back     alignment and assigned GO terms
RGD|3731 Sod1 "superoxide dismutase 1, soluble" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:98351 Sod1 "superoxide dismutase 1, soluble" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WNN6 SOD1 "Superoxide dismutase [Cu-Zn]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP9 SOD1 "Superoxide dismutase [Cu-Zn]" [Cebus apella (taxid:9515)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXQ0 SOD1 "Superoxide dismutase [Cu-Zn]" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P33431SODC_CAVPO1, ., 1, 5, ., 1, ., 10.51970.75750.9803yesno
Q0DRV6SODC1_ORYSJ1, ., 1, 5, ., 1, ., 10.58160.76260.9934yesno
P24704SODC1_ARATH1, ., 1, 5, ., 1, ., 10.56200.76260.9934yesno
Q8WNN6SODC_CANFA1, ., 1, 5, ., 1, ., 10.51310.74740.9673yesno
Q0IIW3SODC_XENTR1, ., 1, 5, ., 1, ., 10.52310.74740.9801yesno
Q8HXP8SODC_CALJA1, ., 1, 5, ., 1, ., 10.50320.75750.9740yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.15.1.10.914
3rd Layer1.15.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XIII1233
RecName- Full=Superoxide dismutase [Cu-Zn]; EC=1.15.1.1;; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) (153 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
PLN02386152 PLN02386, PLN02386, superoxide dismutase [Cu-Zn] 4e-57
pfam00080140 pfam00080, Sod_Cu, Copper/zinc superoxide dismutas 3e-49
cd00305144 cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc s 4e-43
PLN02642164 PLN02642, PLN02642, copper, zinc superoxide dismut 2e-42
COG2032179 COG2032, SodC, Cu/Zn superoxide dismutase [Inorgan 5e-27
PLN02957238 PLN02957, PLN02957, copper, zinc superoxide dismut 2e-09
PRK10290173 PRK10290, PRK10290, superoxide dismutase; Provisio 6e-07
PRK15388177 PRK15388, PRK15388, Cu/Zn superoxide dismutase; Pr 0.003
>gnl|CDD|166027 PLN02386, PLN02386, superoxide dismutase [Cu-Zn] Back     alignment and domain information 
 Score =  177 bits (449), Expect = 4e-57
 Identities = 92/152 (60%), Positives = 106/152 (69%), Gaps = 2/152 (1%)

Query: 46  VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGD 105
           VKAVA + S  G KG + F QEGDGPTT+ G+L  L  G HGFH+H  GD  + C STG 
Sbjct: 2   VKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGP 61

Query: 106 HFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 165
           HFNP  K HG PED  RHAGDLGN+ VG DG A   IVDK   IPL GPNSI+GR+VV+H
Sbjct: 62  HFNPAGKEHGAPEDENRHAGDLGNVTVGDDGTATFTIVDKQ--IPLTGPNSIVGRAVVVH 119

Query: 166 DKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 197
              DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct: 120 ADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

Length = 152
>gnl|CDD|215700 pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC) Back     alignment and domain information
>gnl|CDD|238186 cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc superoxide dismutase (SOD) Back     alignment and domain information
>gnl|CDD|178248 PLN02642, PLN02642, copper, zinc superoxide dismutase Back     alignment and domain information
>gnl|CDD|224943 COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase Back     alignment and domain information
>gnl|CDD|182357 PRK10290, PRK10290, superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|185286 PRK15388, PRK15388, Cu/Zn superoxide dismutase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 198
PLN02386152 superoxide dismutase [Cu-Zn] 100.0
PLN02642164 copper, zinc superoxide dismutase 100.0
PRK15388177 Cu/Zn superoxide dismutase; Provisional 100.0
PRK10290173 superoxide dismutase; Provisional 100.0
KOG0441154 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Ino 100.0
cd00305144 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide 100.0
PF00080142 Sod_Cu: Copper/zinc superoxide dismutase (SODC); I 100.0
COG2032179 SodC Cu/Zn superoxide dismutase [Inorganic ion tra 100.0
PLN02957238 copper, zinc superoxide dismutase 100.0
KOG4656247 consensus Copper chaperone for superoxide dismutas 100.0
>PLN02386 superoxide dismutase [Cu-Zn] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-51  Score=330.26  Aligned_cols=150  Identities=61%  Similarity=0.977  Sum_probs=144.3

Q ss_pred             ccEEEEEcCCCCeEEEEEEEEeCCCcEEEEEEEeecCCCceeeEEeecCCCCCCccccCCcccCCCCCCCCCCCCCCCCC
Q 037040           46 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAG  125 (198)
Q Consensus        46 ~~Ava~l~g~~~V~G~i~f~q~~~g~v~V~~~i~GL~pg~hg~HIHe~gd~~~~c~saGgHfnP~~~~h~~p~~~~~~~G  125 (198)
                      .+|+|+|+++..++|+|+|+|..++.++|+++|+||+||.|+|||||+|||+++|.|+|+||||.++.|+.|++..+|+|
T Consensus         2 ~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~G   81 (152)
T PLN02386          2 VKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAG   81 (152)
T ss_pred             ceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCccc
Confidence            47999999988899999999987767999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeCCCCeEEEEEEEcCceEecCCCCCCCccEEEEecCCCCCCCCCCCCCccCCCCCCeEEEEEEEec
Q 037040          126 DLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ  197 (198)
Q Consensus       126 DLgni~~~~~G~a~~~~~~~~~~l~L~g~~sIiGRSIVIH~~~Dd~g~g~~~~s~~~G~aG~RiACgvI~~s  197 (198)
                      |||||.++++|+++++++++  +++|.++++|+|||||||+++|||++++++.|+++||+|+|||||||+++
T Consensus        82 DLgNi~~~~~G~a~~~~~~~--~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~  151 (152)
T PLN02386         82 DLGNVTVGDDGTATFTIVDK--QIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ  151 (152)
T ss_pred             cccCEEECCCCeEEEEEECC--ceEeCCCCccCCcEEEEEccCCCcCCCcccccccCCCCCceEEEEEEEec
Confidence            99999999999999999998  99999999999999999999999999999999999999999999999986

>PLN02642 copper, zinc superoxide dismutase Back     alignment and domain information
>PRK15388 Cu/Zn superoxide dismutase; Provisional Back     alignment and domain information
>PRK10290 superoxide dismutase; Provisional Back     alignment and domain information
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD) Back     alignment and domain information
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide [] Back     alignment and domain information
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02957 copper, zinc superoxide dismutase Back     alignment and domain information
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
2q2l_A152 Crystal Structure Of Superoxide Dismutase From P. A 3e-44
1srd_A154 Three-Dimensional Structure Of Cu,Zn-Superoxide Dis 1e-40
3km1_A154 Zinc-Reconstituted Tomato Chloroplast Superoxide Di 5e-39
3gtt_A153 Mouse Sod1 Length = 153 2e-37
1to4_A156 Structure Of The Cytosolic Cu,Zn Sod From S. Manson 2e-37
3gtv_A153 Human-Mouse Sod1 Chimera Length = 153 6e-37
1xso_A150 Three-Dimensional Structure Of Xenopus Laevis Cu,Zn 7e-37
3f7k_A152 X-Ray Crystal Structure Of An Alvinella Pompejana C 4e-36
1n18_A154 Thermostable Mutant Of Human Superoxide Dismutase, 6e-36
1sos_A154 Atomic Structures Of Wild-type And Thermostable Mut 6e-36
1l3n_A153 The Solution Structure Of Reduced Dimeric Copper Zi 6e-36
1n19_A154 Structure Of The Hsod A4v Mutant Length = 154 1e-35
2gbt_A153 C6aC111A CUZN SUPEROXIDE DISMUTASE Length = 153 1e-35
1fun_A153 Superoxide Dismutase Mutant With Lys 136 Replaced B 1e-35
1e9p_A151 Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angst 2e-35
3ltv_A153 Mouse-Human Sod1 Chimera Length = 153 3e-35
1e9o_A152 Crystal Structure Of Bovine Sod - 1 Of 3 Length = 1 3e-35
1e9q_A151 Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Leng 3e-35
1ptz_A153 Crystal Structure Of The Human Cu, Zn Superoxide Di 3e-35
3sod_O152 Changes In Crystallographic Structure And Thermosta 4e-35
1azv_A153 Familial Als Mutant G37r Cuznsod (Human) Length = 1 5e-35
1sda_O152 Crystal Structure Of Peroxynitrite-Modified Bovine 5e-35
1uxm_A153 A4v Mutant Of Human Sod1 Length = 153 7e-35
3gzq_A154 Human Sod1 A4v Metal-Free Variant Length = 154 7e-35
4b3e_A154 Structure Of Copper-Zinc Superoxide Dismutase Compl 8e-35
1hl4_A154 The Structure Of Apo Type Human Cu, Zn Superoxide D 8e-35
1hl5_A153 The Structure Of Holo Type Human Cu, Zn Superoxide 8e-35
2c9s_A153 1.24 Angstroms Resolution Structure Of Zn-Zn Human 8e-35
1mfm_A153 Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC 8e-35
1ba9_A153 The Solution Structure Of Reduced Monomeric Superox 9e-35
1q0e_A152 Atomic Resolution (1.15 ) Crystal Structure Of Bovi 1e-34
1cob_A151 Crystal Structure Solution And Refinement Of The Se 1e-34
3ecw_A153 Crystal Structure Of The Als-Related Pathological M 1e-34
2r27_A154 Constitutively Zinc-Deficient Mutant Of Human Super 1e-34
1e9p_B151 Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angst 1e-34
2xjk_A153 Monomeric Human Cu,Zn Superoxide Dismutase Length = 2e-34
1cb4_A151 Crystal Structure Of Copper, Zinc Superoxide Dismut 2e-34
2wyt_A153 1.0 A Resolution Structure Of L38v Sod1 Mutant Leng 2e-34
2wyz_A153 L38v Sod1 Mutant Complexed With Ump Length = 153 2e-34
1ozu_A153 Crystal Structure Of Familial Als Mutant S134n Of H 2e-34
2zky_A159 Crystal Structure Of Human Cu-Zn Superoxide Dismuta 2e-34
1uxl_A153 I113t Mutant Of Human Sod1 Length = 153 2e-34
2wko_F154 Structure Of Metal Loaded Pathogenic Sod1 Mutant G9 3e-34
3gzp_A153 Human Sod1 G93a Metal-Free Variant Length = 153 3e-34
3gzo_A154 Human Sod1 G93a Variant Length = 154 3e-34
1oez_W153 Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismu 3e-34
3h2q_A153 Human Sod1 H80r Variant, P21 Crystal Form Length = 3e-34
3qqd_A154 Human Sod1 H80r Variant, P212121 Crystal Form Lengt 4e-34
2zkw_A159 Crystal Structure Of Human Cu-Zn Superoxide Dismuta 5e-34
1e9o_B152 Crystal Structure Of Bovine Sod - 1 Of 3 Length = 1 6e-34
1e9q_B151 Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Leng 6e-34
2vr8_A154 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 6e-34
3cqq_A153 Human Sod1 G85r Variant, Structure Ii Length = 153 6e-34
2vr7_A154 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 6e-34
2vr6_A153 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 6e-34
4a7g_A153 Structure Of Human I113t Sod1 Mutant Complexed With 7e-34
1dsw_A153 The Solution Structure Of A Monomeric, Reduced Form 8e-34
1p1v_A153 Crystal Structure Of Fals-Associated Human Copper-Z 1e-33
3h2p_A153 Human Sod1 D124v Variant Length = 153 1e-33
2gbu_A153 C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase 1e-33
3gqf_A153 Structural And Biophysical Properties Of The Pathog 1e-33
2nnx_A154 Crystal Structure Of The H46r, H48q Double Mutant O 1e-33
4bcy_A153 Monomeric Human Cu,zn Superoxide Dismutase, Mutatio 2e-33
3kbe_A157 Metal-Free C. Elegans Cu,Zn Superoxide Dismutase Le 2e-32
2xjl_A153 Monomeric Human Cu,Zn Superoxide Dismutase Without 2e-32
3mnd_A152 Crystallographic Analysis Of The Cystosolic CuZN SU 3e-32
1f1g_A154 Crystal Structure Of Yeast Cuznsod Exposed To Nitri 3e-32
1sdy_A153 Structure Solution And Molecular Dynamics Refinemen 4e-32
1f1a_A154 Crystal Structure Of Yeast H48q Cuznsod Fals Mutant 1e-31
3hff_A153 Monomeric Human Cu,Zn Superoxide Dismutase Without 1e-31
3l9y_A154 Crystal Structures Of Holo And Cu-Deficient CuZNSOD 2e-31
1f18_A154 Crystal Structure Of Yeast Copper-Zinc Superoxide D 2e-31
1jk9_A153 Heterodimer Between H48f-Ysod1 And Yccs Length = 15 3e-31
1f1d_A154 Crystal Structure Of Yeast H46c Cuznsod Mutant Leng 3e-31
1b4t_A153 H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPE 3e-31
3l9e_A154 Crystal Structures Of Holo And Cu-Deficient CuZNSOD 2e-30
3ce1_A168 Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE 2e-30
2e47_A156 Crystal Structure Analysis Of The Clock Protein Ea4 4e-29
2e46_A157 Crystal Structure Analysis Of The Clock Protein Ea4 4e-29
1do5_A154 Human Copper Chaperone For Superoxide Dismutase Dom 5e-26
2jlp_A222 Crystal Structure Of Human Extracellular Copper-Zin 2e-17
4bcz_A110 Monomeric Human Cu,zn Superoxide Dismutase, Loops I 2e-10
1xtm_B175 Crystal Structure Of The Double Mutant Y88h-p104h O 5e-10
1xtl_B175 Crystal Structure Of P104h Mutant Of Sod-Like Prote 2e-09
4bd4_A110 Monomeric Human Cu,zn Superoxide Dismutase, Loops I 2e-09
1s4i_B175 Crystal Structure Of A Sod-like Protein From Bacill 1e-08
1u3n_A162 A Sod-Like Protein From B. Subtilis, Unstructured I 2e-08
1eso_A154 Monomeric Cu,Zn Superoxide Dismutase From Escherich 4e-06
1ib5_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 9e-06
1ibd_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 1e-05
1oal_A151 Active Site Copper And Zinc Ions Modulate The Quate 1e-05
1oaj_A151 Active Site Copper And Zinc Ions Modulate The Quate 1e-05
1ibb_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 1e-05
1bzo_A151 Three-Dimensional Structure Of Prokaryotic Cu,Zn Su 1e-05
1yai_A151 X-Ray Structure Of A Bacterial Copper,Zinc Superoxi 1e-05
1ibh_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 2e-05
1ibf_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 2e-05
2aps_A162 CuZN SUPEROXIDE DISMUTASE FROM ACTINOBACILLUS Pleur 2e-05
2aqm_A154 CuZN SUPEROXIDE DISMUTASE FROM BRUCELLA ABORTUS Len 6e-05
2aqr_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 1e-04
2aqt_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 1e-04
2aqq_A164 CuZN SUPEROXID DISMUTATE FROM NEISSERIA MENINGITIDI 3e-04
2aqs_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 3e-04
2aqn_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 4e-04
1z9p_A155 X-Ray Structure Of A Cu-Zn Superoxide Dismutase Fro 4e-04
2k4w_A154 The Solution Structure Of The Monomeric Copper, Zin 5e-04
1z9n_A177 X-Ray Structure Of A Cu-Zn Superoxide Dismutase Fro 5e-04
>pdb|2Q2L|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Atrosanguina Length = 152 Back     alignment and structure 
Iteration: 1

 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46  VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGD 105
            K VA + S  G  G + F QEGDGPTT+ G +  L  G HGFH+H  GD  + C STG 
Sbjct: 2   AKGVAVLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 106 HFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 165
           HFNP  K HG PED  RHAGDLGNI VG DG A   IVDK   IPL GP+SIIGR+VV+H
Sbjct: 62  HFNPAGKEHGSPEDETRHAGDLGNITVGDDGTACFTIVDKQ--IPLTGPHSIIGRAVVVH 119
Query: 166 DKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 197
              DDLGK G+  SK  GNAG +IACG+IGLQ
Sbjct: 120 ADPDDLGKGGHELSKSTGNAGGRIACGIIGLQ 151
>pdb|1SRD|A Chain A, Three-Dimensional Structure Of Cu,Zn-Superoxide Dismutase From Spinach At 2.0 Angstroms Resolution Length = 154 Back     alignment and structure
>pdb|3KM1|A Chain A, Zinc-Reconstituted Tomato Chloroplast Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|3GTT|A Chain A, Mouse Sod1 Length = 153 Back     alignment and structure
>pdb|1TO4|A Chain A, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni Length = 156 Back     alignment and structure
>pdb|3GTV|A Chain A, Human-Mouse Sod1 Chimera Length = 153 Back     alignment and structure
>pdb|1XSO|A Chain A, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography At 1.5 Angstroms Resolution Length = 150 Back     alignment and structure
>pdb|3F7K|A Chain A, X-Ray Crystal Structure Of An Alvinella Pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex Length = 152 Back     alignment and structure
>pdb|1N18|A Chain A, Thermostable Mutant Of Human Superoxide Dismutase, C6a, C111s Length = 154 Back     alignment and structure
>pdb|1SOS|A Chain A, Atomic Structures Of Wild-type And Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimeric Copper Zinc Sod: The Structural Effects Of Dimerization Length = 153 Back     alignment and structure
>pdb|1N19|A Chain A, Structure Of The Hsod A4v Mutant Length = 154 Back     alignment and structure
>pdb|2GBT|A Chain A, C6aC111A CUZN SUPEROXIDE DISMUTASE Length = 153 Back     alignment and structure
>pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e, C6a, C111s) Length = 153 Back     alignment and structure
>pdb|1E9P|A Chain A, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3 Of 3) Length = 151 Back     alignment and structure
>pdb|3LTV|A Chain A, Mouse-Human Sod1 Chimera Length = 153 Back     alignment and structure
>pdb|1E9O|A Chain A, Crystal Structure Of Bovine Sod - 1 Of 3 Length = 152 Back     alignment and structure
>pdb|1E9Q|A Chain A, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Length = 151 Back     alignment and structure
>pdb|1PTZ|A Chain A, Crystal Structure Of The Human Cu, Zn Superoxide Dismutase, Familial Amyotrophic Lateral Sclerosis (Fals) Mutant H43r Length = 153 Back     alignment and structure
>pdb|3SOD|O Chain O, Changes In Crystallographic Structure And Thermostability Of A Cu,Zn Superoxide Dismutase Mutant Resulting From The Removal Of Buried Cysteine Length = 152 Back     alignment and structure
>pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human) Length = 153 Back     alignment and structure
>pdb|1SDA|O Chain O, Crystal Structure Of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase Length = 152 Back     alignment and structure
>pdb|1UXM|A Chain A, A4v Mutant Of Human Sod1 Length = 153 Back     alignment and structure
>pdb|3GZQ|A Chain A, Human Sod1 A4v Metal-Free Variant Length = 154 Back     alignment and structure
>pdb|4B3E|A Chain A, Structure Of Copper-Zinc Superoxide Dismutase Complexed With Bicarbonate. Length = 154 Back     alignment and structure
>pdb|1HL4|A Chain A, The Structure Of Apo Type Human Cu, Zn Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1HL5|A Chain A, The Structure Of Holo Type Human Cu, Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|2C9S|A Chain A, 1.24 Angstroms Resolution Structure Of Zn-Zn Human Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1MFM|A Chain A, Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC Resolution Length = 153 Back     alignment and structure
>pdb|1BA9|A Chain A, The Solution Structure Of Reduced Monomeric Superoxide Dismutase, Nmr, 36 Structures Length = 153 Back     alignment and structure
>pdb|1Q0E|A Chain A, Atomic Resolution (1.15 ) Crystal Structure Of Bovine Copper, Zinc Superoxide Dismutase Length = 152 Back     alignment and structure
>pdb|1COB|A Chain A, Crystal Structure Solution And Refinement Of The Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase At 2.0 Angstroms Resolution Length = 151 Back     alignment and structure
>pdb|3ECW|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1) Length = 153 Back     alignment and structure
>pdb|2R27|A Chain A, Constitutively Zinc-Deficient Mutant Of Human Superoxide Dismutase (Sod), C6a, H80s, H83s, C111s Length = 154 Back     alignment and structure
>pdb|1E9P|B Chain B, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3 Of 3) Length = 151 Back     alignment and structure
>pdb|2XJK|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1CB4|A Chain A, Crystal Structure Of Copper, Zinc Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|2WYT|A Chain A, 1.0 A Resolution Structure Of L38v Sod1 Mutant Length = 153 Back     alignment and structure
>pdb|2WYZ|A Chain A, L38v Sod1 Mutant Complexed With Ump Length = 153 Back     alignment and structure
>pdb|1OZU|A Chain A, Crystal Structure Of Familial Als Mutant S134n Of Human Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution Length = 153 Back     alignment and structure
>pdb|2ZKY|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant G93a Length = 159 Back     alignment and structure
>pdb|1UXL|A Chain A, I113t Mutant Of Human Sod1 Length = 153 Back     alignment and structure
>pdb|2WKO|F Chain F, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a Length = 154 Back     alignment and structure
>pdb|3GZP|A Chain A, Human Sod1 G93a Metal-Free Variant Length = 153 Back     alignment and structure
>pdb|3GZO|A Chain A, Human Sod1 G93a Variant Length = 154 Back     alignment and structure
>pdb|1OEZ|W Chain W, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|3H2Q|A Chain A, Human Sod1 H80r Variant, P21 Crystal Form Length = 153 Back     alignment and structure
>pdb|3QQD|A Chain A, Human Sod1 H80r Variant, P212121 Crystal Form Length = 154 Back     alignment and structure
>pdb|2ZKW|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant G85r In Space Group P21 Length = 159 Back     alignment and structure
>pdb|1E9O|B Chain B, Crystal Structure Of Bovine Sod - 1 Of 3 Length = 152 Back     alignment and structure
>pdb|1E9Q|B Chain B, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Length = 151 Back     alignment and structure
>pdb|2VR8|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.36 A Resolution Length = 154 Back     alignment and structure
>pdb|3CQQ|A Chain A, Human Sod1 G85r Variant, Structure Ii Length = 153 Back     alignment and structure
>pdb|2VR7|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.58 A Resolution Length = 154 Back     alignment and structure
>pdb|2VR6|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.3 A Resolution Length = 153 Back     alignment and structure
>pdb|4A7G|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 4- Methylpiperazin-1-Yl)quinazoline In The P21 Space Group Length = 153 Back     alignment and structure
>pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, Reduced Form Of Human Copper, Zinc Superoxide Dismutase Bearing The Same Charge As The Native Protein Length = 153 Back     alignment and structure
>pdb|1P1V|A Chain A, Crystal Structure Of Fals-Associated Human Copper-Zinc Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a Length = 153 Back     alignment and structure
>pdb|3H2P|A Chain A, Human Sod1 D124v Variant Length = 153 Back     alignment and structure
>pdb|2GBU|A Chain A, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|3GQF|A Chain A, Structural And Biophysical Properties Of The Pathogenic Sod1 Variant H46rH48Q Length = 153 Back     alignment and structure
>pdb|2NNX|A Chain A, Crystal Structure Of The H46r, H48q Double Mutant Of Human [cu-Zn] Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|4BCY|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Mutation H43f Length = 153 Back     alignment and structure
>pdb|3KBE|A Chain A, Metal-Free C. Elegans Cu,Zn Superoxide Dismutase Length = 157 Back     alignment and structure
>pdb|2XJL|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Cu Ligands Length = 153 Back     alignment and structure
>pdb|3MND|A Chain A, Crystallographic Analysis Of The Cystosolic CuZN SUPEROXIDE DISMUTASE From Taenia Solium Length = 152 Back     alignment and structure
>pdb|1F1G|A Chain A, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide Length = 154 Back     alignment and structure
>pdb|1SDY|A Chain A, Structure Solution And Molecular Dynamics Refinement Of The Yeast Cu,Zn Enzyme Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1F1A|A Chain A, Crystal Structure Of Yeast H48q Cuznsod Fals Mutant Analog Length = 154 Back     alignment and structure
>pdb|3HFF|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Zn Ligands Length = 153 Back     alignment and structure
>pdb|3L9Y|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM The Silkworm Bombyx Mori And The Implications In Amyotrophic Lateral Sclerosis Length = 154 Back     alignment and structure
>pdb|1F18|A Chain A, Crystal Structure Of Yeast Copper-Zinc Superoxide Dismutase Mutant Gly85arg Length = 154 Back     alignment and structure
>pdb|1JK9|A Chain A, Heterodimer Between H48f-Ysod1 And Yccs Length = 153 Back     alignment and structure
>pdb|1F1D|A Chain A, Crystal Structure Of Yeast H46c Cuznsod Mutant Length = 154 Back     alignment and structure
>pdb|1B4T|A Chain A, H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298k) Structure Length = 153 Back     alignment and structure
>pdb|3L9E|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM THE SILKWORM Bombyx Mori And The Implications In Amyotrophic Lateral Sclerosis Length = 154 Back     alignment and structure
>pdb|3CE1|A Chain A, Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE FROM Cryptococcus Liquefaciens Strain N6 Length = 168 Back     alignment and structure
>pdb|2E47|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4 (Glycosylation Form) Length = 156 Back     alignment and structure
>pdb|2E46|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4 Length = 157 Back     alignment and structure
>pdb|1DO5|A Chain A, Human Copper Chaperone For Superoxide Dismutase Domain Ii Length = 154 Back     alignment and structure
>pdb|2JLP|A Chain A, Crystal Structure Of Human Extracellular Copper-Zinc Superoxide Dismutase. Length = 222 Back     alignment and structure
>pdb|4BCZ|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And Vii Deleted, Apo Form. Length = 110 Back     alignment and structure
>pdb|1XTM|B Chain B, Crystal Structure Of The Double Mutant Y88h-p104h Of A Sod-like Protein From Bacillus Subtilis. Length = 175 Back     alignment and structure
>pdb|1XTL|B Chain B, Crystal Structure Of P104h Mutant Of Sod-Like Protein From Bacillus Subtilis. Length = 175 Back     alignment and structure
>pdb|4BD4|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And Vii Deleted, Apo Form, Mutant H43f Length = 110 Back     alignment and structure
>pdb|1S4I|B Chain B, Crystal Structure Of A Sod-like Protein From Bacillus Subtilis Length = 175 Back     alignment and structure
>pdb|1U3N|A Chain A, A Sod-Like Protein From B. Subtilis, Unstructured In Solution, Becomes Ordered In The Crystal: Implications For Function And For Fibrillogenesis Length = 162 Back     alignment and structure
>pdb|1ESO|A Chain A, Monomeric Cu,Zn Superoxide Dismutase From Escherichia Coli Length = 154 Back     alignment and structure
>pdb|1IB5|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant W83y Length = 151 Back     alignment and structure
>pdb|1IBD|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant V29a Length = 151 Back     alignment and structure
>pdb|1OAL|A Chain A, Active Site Copper And Zinc Ions Modulate The Quaternary Structure Of Prokaryotic Cu,Zn Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1OAJ|A Chain A, Active Site Copper And Zinc Ions Modulate The Quaternary Structure Of Prokaryotic Cu,Zn Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1IBB|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant W83f Length = 151 Back     alignment and structure
>pdb|1BZO|A Chain A, Three-Dimensional Structure Of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography Length = 151 Back     alignment and structure
>pdb|1YAI|A Chain A, X-Ray Structure Of A Bacterial Copper,Zinc Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1IBH|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant M41i Length = 151 Back     alignment and structure
>pdb|1IBF|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant V29g Length = 151 Back     alignment and structure
>pdb|2APS|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM ACTINOBACILLUS Pleuropneumoniae Length = 162 Back     alignment and structure
>pdb|2AQM|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM BRUCELLA ABORTUS Length = 154 Back     alignment and structure
>pdb|2AQR|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS K91Q Mutant Length = 164 Back     alignment and structure
>pdb|2AQT|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS K91Q, K94q Double Mutant Length = 164 Back     alignment and structure
>pdb|2AQQ|A Chain A, CuZN SUPEROXID DISMUTATE FROM NEISSERIA MENINGITIDIS K91E MUTANT Length = 164 Back     alignment and structure
>pdb|2AQS|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS K91E, K94e Double Mutant Length = 164 Back     alignment and structure
>pdb|2AQN|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS Length = 164 Back     alignment and structure
>pdb|1Z9P|A Chain A, X-Ray Structure Of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi Length = 155 Back     alignment and structure
>pdb|2K4W|A Chain A, The Solution Structure Of The Monomeric Copper, Zinc Superox Dismutase From Salmonella Enterica Length = 154 Back     alignment and structure
>pdb|1Z9N|A Chain A, X-Ray Structure Of A Cu-Zn Superoxide Dismutase From Haemophilus Ducreyi With Haem Bound At The Dimer Interface Length = 177 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
2q2l_A152 Superoxide dismutase; SOD, SAD, antioxidant, oxido 1e-62
3pu7_A154 Superoxide dismutase [CU-ZN], chloroplastic; oxido 8e-61
1to4_A156 Superoxide dismutase; beta-barrel, oxidoreductase; 2e-60
1xso_A150 Copper,zinc superoxide dismutase; oxidoreductase ( 3e-58
1do5_A154 Human copper chaperone for superoxide dismutase do 4e-58
3f7l_A152 Copper,zinc superoxide dismutase; oxidoreductase ( 6e-58
2e47_A156 EA4, TIME interVal measuring enzyme TIME; motallop 6e-58
3kbe_A157 Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis 2e-56
2wyt_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, dise 2e-56
3ce1_A168 Superoxide dismutase [CU-ZN]; greek-KEY beta barre 5e-56
1f1g_A154 Cuznsod, copper-zinc superoxide dismutase; nitric 6e-56
3l9y_A154 Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY 2e-53
1xtm_B175 Hypothetical superoxide dismutase-like protein YO; 4e-49
2aqm_A154 Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10 5e-47
1pzs_A208 Superoxide dismutase [CU-ZN]; Cu-protein, beta cor 2e-46
1eqw_A156 Cu,Zn superoxide dismutase; greek KEY B-barrel, ox 3e-46
1eso_A154 SOD, Cu, Zn superoxide dismutase; oxidoreductase, 1e-45
2jlp_A222 Extracellular superoxide dismutase (Cu-Zn); glycol 3e-45
2aqp_A164 Superoxide dismutase [CU-ZN]; electrostatic guidan 3e-44
1z9n_A177 Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid 2e-43
1oal_A151 Superoxide dismutase; oxidoreductase, prokaryotic 3e-43
1ej8_A140 Lys7; beta barrel, copper chaperone for SOD, domai 3e-35
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 9e-31
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 2e-30
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea} Length = 152 Back     alignment and structure
 Score =  190 bits (484), Expect = 1e-62
 Identities = 90/153 (58%), Positives = 102/153 (66%), Gaps = 2/153 (1%)

Query: 46  VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGD 105
            K VA + S  G  G + F QEGDGPTT+ G +  L  G HGFH+H  GD  + C STG 
Sbjct: 2   AKGVAVLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTGP 61

Query: 106 HFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIH 165
           HFNP  K HG PED  RHAGDLGNI VG DG A   IVD  K IPL GP+SIIGR+VV+H
Sbjct: 62  HFNPAGKEHGSPEDETRHAGDLGNITVGDDGTACFTIVD--KQIPLTGPHSIIGRAVVVH 119

Query: 166 DKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 198
              DDLGK G+  SK  GNAG +IACG+IGLQ 
Sbjct: 120 ADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 1srd_A Length = 154 Back     alignment and structure
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A Length = 156 Back     alignment and structure
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1 Length = 150 Back     alignment and structure
>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1 Length = 154 Back     alignment and structure
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} PDB: 3f7k_A Length = 152 Back     alignment and structure
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A Length = 156 Back     alignment and structure
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} PDB: 3kbf_A Length = 157 Back     alignment and structure
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ... Length = 153 Back     alignment and structure
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens} Length = 168 Back     alignment and structure
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A Length = 154 Back     alignment and structure
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A Length = 154 Back     alignment and structure
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A Length = 175 Back     alignment and structure
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus} Length = 154 Back     alignment and structure
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1 Length = 208 Back     alignment and structure
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A* Length = 156 Back     alignment and structure
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A Length = 154 Back     alignment and structure
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens} Length = 222 Back     alignment and structure
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A Length = 164 Back     alignment and structure
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi} Length = 177 Back     alignment and structure
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A Length = 151 Back     alignment and structure
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1 Length = 140 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
3pu7_A154 Superoxide dismutase [CU-ZN], chloroplastic; oxido 100.0
4a7u_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, amyo 100.0
3f7l_A152 Copper,zinc superoxide dismutase; oxidoreductase ( 100.0
2q2l_A152 Superoxide dismutase; SOD, SAD, antioxidant, oxido 100.0
3l9y_A154 Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY 100.0
1f1g_A154 Cuznsod, copper-zinc superoxide dismutase; nitric 100.0
2wyt_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, dise 100.0
1to4_A156 Superoxide dismutase; beta-barrel, oxidoreductase; 100.0
1xso_A150 Copper,zinc superoxide dismutase; oxidoreductase ( 100.0
3kbe_A157 Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis 100.0
3ce1_A168 Superoxide dismutase [CU-ZN]; greek-KEY beta barre 100.0
2e47_A156 EA4, TIME interVal measuring enzyme TIME; motallop 100.0
1do5_A154 Human copper chaperone for superoxide dismutase do 100.0
2jlp_A222 Extracellular superoxide dismutase (Cu-Zn); glycol 100.0
1xtm_B175 Hypothetical superoxide dismutase-like protein YO; 100.0
2aqm_A154 Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10 100.0
1eqw_A156 Cu,Zn superoxide dismutase; greek KEY B-barrel, ox 100.0
1oal_A151 Superoxide dismutase; oxidoreductase, prokaryotic 100.0
2aqp_A164 Superoxide dismutase [CU-ZN]; electrostatic guidan 100.0
1z9n_A177 Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid 100.0
1pzs_A208 Superoxide dismutase [CU-ZN]; Cu-protein, beta cor 100.0
1eso_A154 SOD, Cu, Zn superoxide dismutase; oxidoreductase, 100.0
1ej8_A140 Lys7; beta barrel, copper chaperone for SOD, domai 100.0
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 100.0
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 100.0
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 3s0p_A 1srd_A Back     alignment and structure
Probab=100.00  E-value=1.2e-54  Score=347.96  Aligned_cols=151  Identities=51%  Similarity=0.875  Sum_probs=146.1

Q ss_pred             cccEEEEEcCCCCeEEEEEEEEeCCCcEEEEEEEeecCCCceeeEEeecCCCCCCccccCCcccCCCCCCCCCCCCCCCC
Q 037040           45 TVKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHA  124 (198)
Q Consensus        45 ~~~Ava~l~g~~~V~G~i~f~q~~~g~v~V~~~i~GL~pg~hg~HIHe~gd~~~~c~saGgHfnP~~~~h~~p~~~~~~~  124 (198)
                      +.+|+|+|++..+|+|+|+|+|..++.|+|+++|+||+||.|+|||||+|||+++|.|||+||||+++.|+.|++..||+
T Consensus         2 ~~~Avavl~g~~~V~G~v~f~q~~~g~v~v~~~i~GL~pG~hgfHIHe~Gd~s~gc~SaGgHfnP~~~~Hg~p~~~~~h~   81 (154)
T 3pu7_A            2 TKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHA   81 (154)
T ss_dssp             EEEEEEEEBCSSSCEEEEEEEEETTSCEEEEEEEESCCSEEEEEEEESCCCCTTGGGGGCSBCCTTCCCCCCTTCSSCCT
T ss_pred             CceEEEEECCCCCCEEEEEEEEeCCCcEEEEEEEECCCCCcccEEEeecCCCCCCccccccccCCccCcCCCCCccCCcC
Confidence            45899999998899999999999877799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeCCCCeEEEEEEEcCceEecCCCCCCCccEEEEecCCCCCCCCCCCCCccCCCCCCeEEEEEEEec
Q 037040          125 GDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ  197 (198)
Q Consensus       125 GDLgni~~~~~G~a~~~~~~~~~~l~L~g~~sIiGRSIVIH~~~Dd~g~g~~~~s~~~G~aG~RiACgvI~~s  197 (198)
                      ||||||+++++|+++++++++  +++|+|+++|+|||||||+++|||++|+++.|+++||+|+|||||||+++
T Consensus        82 GDLgni~~~~~G~a~~~~~d~--~l~L~g~~~iiGRslVIH~~~DD~~~g~~~~s~~tGnaG~RiaCGvIg~~  152 (154)
T 3pu7_A           82 GDLGNIVANADGVAEVTLVDN--QIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT  152 (154)
T ss_dssp             TEEEEEEECTTSCEEEEEEES--SCCSSSTTCCTTSEEEEESSCCCTTCSCCTTTTTTTTCCCEEEEEECEEC
T ss_pred             CcccCEEeCCCCcEEEEEEeC--CeeeCCCCccCCeEEEEECCCccCCCCCCcCCcCCCCCcCcEEEEEEEEe
Confidence            999999999999999999999  99999999999999999999999999999999999999999999999987
>4a7u_A Superoxide dismutase [CU-ZN]; oxidoreductase, amyotrophic lateral sclerosis, antioxidant, mutation, metal-binding, Zn superoxide dismutase; HET: ALE; 0.98A {Homo sapiens} PDB: 3ecv_A 1uxl_A* 4a7g_F* 4a7q_A* 4a7t_A* 4a7s_A* 4a7v_A* 4b3e_A 4a7g_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A ... Back     alignment and structure
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} SCOP: b.1.8.1 PDB: 3f7k_A Back     alignment and structure
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea} Back     alignment and structure
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} SCOP: b.1.8.1 PDB: 3l9e_A Back     alignment and structure
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A Back     alignment and structure
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ... Back     alignment and structure
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A Back     alignment and structure
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1 Back     alignment and structure
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} SCOP: b.1.8.1 PDB: 3kbf_A Back     alignment and structure
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens} Back     alignment and structure
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A Back     alignment and structure
>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1 Back     alignment and structure
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens} Back     alignment and structure
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A Back     alignment and structure
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus} Back     alignment and structure
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A* Back     alignment and structure
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A Back     alignment and structure
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A Back     alignment and structure
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi} Back     alignment and structure
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1 Back     alignment and structure
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A Back     alignment and structure
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 198
d1to4a_156 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bloo 1e-44
d1srda_154 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spin 6e-44
d2c9va1153 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD 3e-43
d1xsoa_150 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Afri 2e-41
d1do5a_154 b.1.8.1 (A:) Copper chaperone for superoxide dismu 4e-41
d1f1ga_153 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bake 7e-41
d2apsa_155 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Acti 3e-33
d1eqwa_155 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salm 7e-33
d1oala_151 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Phot 2e-31
d1esoa_154 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Esch 4e-31
d1pzsa_171 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Myco 2e-28
d1ej8a_140 b.1.8.1 (A:) Copper chaperone for superoxide dismu 2e-26
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} Length = 156 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

 Score =  143 bits (361), Expect = 1e-44
 Identities = 79/155 (50%), Positives = 98/155 (63%), Gaps = 3/155 (1%)

Query: 45  TVKAVAYVISKWGPKGILHFKQEGD-GPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQST 103
            +KAV  +    G KG++ F QE D GP  +      L  G HGFH+H +GD  + C S 
Sbjct: 3   NMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSA 62

Query: 104 GDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVV 163
           G HFNP ++ HG PED IRH GDLGN+  G DG A  N  D  KLI L G +SIIGRS+V
Sbjct: 63  GAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATD--KLISLNGSHSIIGRSMV 120

Query: 164 IHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA 198
           IH+  DDLG+ G+  SK  GNAG ++ACGV+GL A
Sbjct: 121 IHENEDDLGRGGHELSKVTGNAGGRLACGVVGLAA 155
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 154 Back     information, alignment and structure
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 150 Back     information, alignment and structure
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 153 Back     information, alignment and structure
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]} Length = 155 Back     information, alignment and structure
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]} Length = 155 Back     information, alignment and structure
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]} Length = 151 Back     information, alignment and structure
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]} Length = 154 Back     information, alignment and structure
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 Back     information, alignment and structure
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
d1to4a_156 Cu,Zn superoxide dismutase, SOD {Blood fluke (Schi 100.0
d1srda_154 Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia 100.0
d1f1ga_153 Cu,Zn superoxide dismutase, SOD {Baker's yeast (Sa 100.0
d2c9va1153 Cu,Zn superoxide dismutase, SOD {Human (Homo sapie 100.0
d1xsoa_150 Cu,Zn superoxide dismutase, SOD {African clawed fr 100.0
d1do5a_154 Copper chaperone for superoxide dismutase, C-termi 100.0
d2apsa_155 Cu,Zn superoxide dismutase, SOD {Actinobacillus pl 100.0
d1eqwa_155 Cu,Zn superoxide dismutase, SOD {Salmonella typhim 100.0
d1esoa_154 Cu,Zn superoxide dismutase, SOD {Escherichia coli 100.0
d1oala_151 Cu,Zn superoxide dismutase, SOD {Photobacterium le 100.0
d1pzsa_171 Cu,Zn superoxide dismutase, SOD {Mycobacterium tub 100.0
d1ej8a_140 Copper chaperone for superoxide dismutase, C-termi 100.0
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=100.00  E-value=5.7e-53  Score=336.95  Aligned_cols=152  Identities=51%  Similarity=0.886  Sum_probs=146.2

Q ss_pred             cccEEEEEcCCCCeEEEEEEEEeCCC-cEEEEEEEeecCCCceeeEEeecCCCCCCccccCCcccCCCCCCCCCCCCCCC
Q 037040           45 TVKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRH  123 (198)
Q Consensus        45 ~~~Ava~l~g~~~V~G~i~f~q~~~g-~v~V~~~i~GL~pg~hg~HIHe~gd~~~~c~saGgHfnP~~~~h~~p~~~~~~  123 (198)
                      ..+|+|+|++++.|+|+|+|+|..++ .|+|+++|+||+||.|+|||||+|||+++|.|+|+||||++..|+.|++..+|
T Consensus         3 ~~~Ava~~~g~~~v~G~v~F~Q~~~~~~v~V~~~l~GL~pG~hg~HIHe~Gd~s~~~~saGgH~nP~~~~hg~~~~~~~h   82 (156)
T d1to4a_           3 NMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRH   82 (156)
T ss_dssp             CCEEEEEEBCSSSCEEEEEEEESSTTSCEEEEEEEESCCSEEEEEEEESCCCCTTTTGGGCSBCCTTCCCCCCTTCSSCC
T ss_pred             ceEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEccCCCcceeeEEcCCCccCCcccccccccccccccccCCCcccCc
Confidence            45899999998899999999998765 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeeCCCCeEEEEEEEcCceEecCCCCCCCccEEEEecCCCCCCCCCCCCCccCCCCCCeEEEEEEEecC
Q 037040          124 AGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQA  198 (198)
Q Consensus       124 ~GDLgni~~~~~G~a~~~~~~~~~~l~L~g~~sIiGRSIVIH~~~Dd~g~g~~~~s~~~G~aG~RiACgvI~~s~  198 (198)
                      +|||||++++++|+++++++++  +++|+++++|+|||||||+++|||++++++.|+++|++|+|||||||++|+
T Consensus        83 ~GDlgni~~~~~G~~~~~~~d~--~l~l~g~~~iiGRsiVIH~~~Dd~~~~~~~~s~~~G~aG~RiACgvIg~a~  155 (156)
T d1to4a_          83 VGDLGNVVAGADGNAVYNATDK--LISLNGSHSIIGRSMVIHENEDDLGRGGHELSKVTGNAGGRLACGVVGLAA  155 (156)
T ss_dssp             TTEEEEEEECTTSCEEEEEEES--SCBSSGGGBCTTSEEEEESSCCCTTCSCSTTHHHHTTCCSEEEEEECEECC
T ss_pred             cCccccEEeCCCceEEEEEECc--eeecCCcCCcCCcEEEEECCCCccccCCcccccccCCCCceEEEEEEEEec
Confidence            9999999999999999999998  999999999999999999999999999999999999999999999999986
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]} Back     information, alignment and structure
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]} Back     information, alignment and structure
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure