Citrus Sinensis ID: 037093

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MNSSSSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPNVNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGSYFGFDSSDYVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEccccccEEEEcccccccccEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHcccccccccccccccccccccccccEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnsssstkIKKKqtqqgqdttggsngnrflgvrrrpwgryaaeirdpstkerhwlgtfdTAEEAALAYDRAArsmrgprartnfvysdmppgssvtsiispdepqqqhqysfhipspnshprsepnlqhqpflnqdfssgfsstfpnvnddhyshnnnalsysytyddnnsnstelpplpsdlsayagystdsnvmshssydelgqgawstsessanlmgfcepssvtsnngfdtmgsgsggsyfgfdssdyvqhsplfssmppvsdtvpdgfhlgsssyff
Flexible Loop (DISEMBL)
mnsssstkikkkqtqqgqdttggsngnrflgvrrrpwgryaaeirdpstkerhwlGTFDTAEEAALAYDRAARSMRGPRARTNFVYSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPNVNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGSYFGFDSSDYVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF
Low Complexity Region (SEG)
MnsssstkikkkqtqqgqdttggsngnRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTaeeaalaydraarSMRGPRARTNFVYSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPNVNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMgsgsggsyfgfdssdyVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF
Disordered region (IsUnstruct)
****************************FLGVRRRPWGRYAAEIR*****ERHWLGTFDTAEEAALAY**********************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*******************************VRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVY********************************************************************************************************************************************************GSG*********************PPVSDTVPDGFHLGS*SYFF
Disordered Region (DISEMBL)
*********************GGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYSDMPPGSSVTSIISP*********SFHIPS*********NLQHQPFLNQDFSSGFSSTFPNVNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGSYFGFDSSDYVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF
Disordered Region (DISPRO)
*************************GNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS*****************************************HQPFLNQDFSSGFSSTFPNVNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLSAYAG**TDS***********GQ****TSESSANLMGFCEPS****************GSYFGFDSSDYVQHSPLFSSMPPVSDTVPDGFHLGSSS*F*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSSSSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPNVNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGSYFGFDSSDYVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q9M644	211	Ethylene-responsive trans	yes	no	0.730	0.976	0.476	4e-44
Q9FZ90	245	Ethylene-responsive trans	no	no	0.315	0.363	0.764	8e-34
Q6J9Q2	348	Ethylene-responsive trans	no	no	0.212	0.172	0.9	1e-27
Q3E703	219	Ethylene-responsive trans	no	no	0.560	0.721	0.441	8e-25
Q9FYK5	306	Ethylene-responsive trans	no	no	0.209	0.192	0.830	9e-24
Q9SAD4	328	Ethylene-responsive trans	no	no	0.304	0.262	0.545	1e-23
Q9LW49	227	Ethylene-responsive trans	N/A	no	0.287	0.356	0.580	1e-20
Q40477	225	Ethylene-responsive trans	N/A	no	0.287	0.36	0.580	2e-20
O80340	222	Ethylene-responsive trans	no	no	0.202	0.256	0.754	2e-19
Q9M374	315	Ethylene-responsive trans	no	no	0.297	0.266	0.511	2e-19

>sp|Q9M644|LEP_ARATH Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1

 Score =  178 bits (452), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 131/275 (47%), Positives = 152/275 (55%), Gaps = 69/275 (25%)

Query: 1   MNSSSSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDT 60
           MN++SS K KKKQ  Q         G RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDT
Sbjct: 1   MNTTSS-KSKKKQDDQV--------GTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDT 51

Query: 61  AEEAALAYDRAARSMRGPRARTNFVYSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSH 120
           AEEAALAYDRAARSMRG RARTNFVYSDMPP SSVTSI+SPD+P                
Sbjct: 52  AEEAALAYDRAARSMRGTRARTNFVYSDMPPSSSVTSIVSPDDPPPPPP--------PPA 103

Query: 121 PRSEPNLQHQPFLNQDFSSGFSSTFPNVND-DHYSHNNNALSYSYTYDDNNSNSTELPPL 179
           P S   + +    NQ  S+      P+ +  D Y    +  S SY Y +++SN  ELPPL
Sbjct: 104 PPSNDPVDYMMMFNQYSSTDSPMLQPHCDQVDSYMFGGSQSSNSYCYSNDSSN--ELPPL 161

Query: 180 PSDLSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSG 239
           PSDL             S+S Y +  Q  W                              
Sbjct: 162 PSDL-------------SNSCYSQ-PQWTW------------------------------ 177

Query: 240 SGGSYFGFDSSDYVQHSPLFSSMPPVSDTVPDGFH 274
           +G  Y    SS+YV HSP+FS MPPVSD+ P GF+
Sbjct: 178 TGDDY----SSEYV-HSPMFSRMPPVSDSFPQGFN 207

Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ90|ERF87_ARATH Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1

 Score =  144 bits (363), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 78/89 (87%)

Query: 28  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS 87
           +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDTAEEAALAYDRAARS+RG  ARTNFVYS
Sbjct: 38  KYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYS 97

Query: 88  DMPPGSSVTSIISPDEPQQQHQYSFHIPS 116
           DMP GSSVTS +SPDE Q+     F+ PS
Sbjct: 98  DMPRGSSVTSFVSPDESQRFISELFNPPS 126

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J9Q2|ERF86_ARATH Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 57/60 (95%)

Query: 28  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS 87
           RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTA EAALAYDRAA SMRG +ARTNFVY+
Sbjct: 54  RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYT 113

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E703|ERF88_ARATH Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF088 PE=2 SV=1

 Score =  114 bits (285), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 102/181 (56%), Gaps = 23/181 (12%)

Query: 5   SSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEA 64
           SS K K K+ ++ Q+        ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAEEA
Sbjct: 4   SSNKRKSKEEKKLQE-------GKYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEA 56

Query: 65  ALAYDRAARSMRGPRARTNFVYSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSE 124
           A AYD AARS+ G  A TNF Y++       TS+     PQQ  +     P       S 
Sbjct: 57  AFAYDVAARSISGSLATTNFFYTEN------TSL--ERHPQQSLE-----PHMTWGSSSL 103

Query: 125 PNLQHQPFLNQDFSSG-FSSTFPNVNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDL 183
             LQ QPF N  F +   SS+F    +   ++  N  S+ Y   D+   S E+  LP+D+
Sbjct: 104 CLLQDQPFENNHFVADPISSSFSQKQESS-TNLTNTFSHCYNDGDHVGQSKEI-SLPNDM 161

Query: 184 S 184
           S
Sbjct: 162 S 162

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYK5|ESR2_ARATH Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 49/59 (83%), Positives = 53/59 (89%)

Query: 28  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVY 86
           R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAEEAA AYD AAR+MRG +ARTNFVY
Sbjct: 57  RYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY 115

Required for correct embryo patterning and cotyledon organogenesis. May regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAD4|ESR1_ARATH Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 67/99 (67%), Gaps = 13/99 (13%)

Query: 9   IKKKQTQQGQDTT-----GGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEE 63
           + + +    +DTT      GS+  R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAE+
Sbjct: 32  VSRNRKLSSKDTTVTIAGAGSSTTRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQ 91

Query: 64  AALAYDRAARSMRGPRARTNFVYSDMPPGSSVTSIISPD 102
           AA AYD AAR+ RG +ARTNF Y         T++I P+
Sbjct: 92  AACAYDSAARAFRGAKARTNFTYP--------TAVIMPE 122

Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryon patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW49|ERF4_NICSY Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 54/81 (66%)

Query: 4  SSSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEE 63
          +   K+     + G   T G     + GVR+RPWGRYAAEIRDP  K R WLGTFDTAEE
Sbjct: 2  AVKNKVSNGDLKGGNVKTNGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 61

Query: 64 AALAYDRAARSMRGPRARTNF 84
          AA AYD AAR  RGP+A+TNF
Sbjct: 62 AAKAYDTAAREFRGPKAKTNF 82

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs.

Nicotiana sylvestris (taxid: 4096)

>sp|Q40477|ERF4_TOBAC Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 54/81 (66%)

Query: 4  SSSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEE 63
          +   K+     + G   T G     + GVR+RPWGRYAAEIRDP  K R WLGTFDTAEE
Sbjct: 2  AVKNKVSNGNLKGGNVKTDGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEE 61

Query: 64 AALAYDRAARSMRGPRARTNF 84
          AA AYD AAR  RGP+A+TNF
Sbjct: 62 AAKAYDTAAREFRGPKAKTNF 82

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs.

Nicotiana tabacum (taxid: 4097)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 47/57 (82%)

Query: 28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNF 84
          R+ GVR+RPWGRYAAEIRDP  K R WLGTFDTAEEAA AYD AAR  RG +A+TNF
Sbjct: 24 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNF 80

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M374|CRF6_ARATH Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 64/90 (71%), Gaps = 6/90 (6%)

Query: 2   NSSSSTKIKKKQTQQGQ------DTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWL 55
            SSSST  +K + ++ +      D +      ++ GVR+RPWG++AAEIRDPS++ R WL
Sbjct: 72  ESSSSTAARKGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSRTRIWL 131

Query: 56  GTFDTAEEAALAYDRAARSMRGPRARTNFV 85
           GTF TAEEAA+AYDRAA  ++GP+A TNF+
Sbjct: 132 GTFVTAEEAAIAYDRAAIHLKGPKALTNFL 161

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
224138616	274	AP2/ERF domain-containing transcription	0.836	0.861	0.560	3e-59
147862201	585	hypothetical protein VITISV_025283 [Viti	0.794	0.382	0.546	3e-56
225451649	260	PREDICTED: ethylene-responsive transcrip	0.794	0.861	0.546	3e-55
296082248	215	unnamed protein product [Vitis vinifera]	0.691	0.906	0.549	1e-54
356498625	274	PREDICTED: ethylene-responsive transcrip	0.847	0.872	0.494	3e-54
255644774	274	unknown [Glycine max]	0.847	0.872	0.491	1e-53
255543493	270	Ethylene-responsive transcription factor	0.819	0.855	0.528	2e-53
356559504	274	PREDICTED: ethylene-responsive transcrip	0.780	0.802	0.491	3e-51
225443494	266	PREDICTED: ethylene-responsive transcrip	0.875	0.928	0.489	7e-51
224075437	295	AP2/ERF domain-containing transcription	0.822	0.786	0.480	1e-48

>gi|224138616|ref|XP_002326647.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222833969|gb|EEE72446.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 153/273 (56%), Positives = 175/273 (64%), Gaps = 37/273 (13%)

Query: 26  GNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFV 85
           G RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRG RARTNFV
Sbjct: 23  GLRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFV 82

Query: 86  YSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSE------PNLQHQ----PFLNQ 135
           YSDMP GS VTSIISPDE Q   Q      S N++  S       P+  HQ    P  NQ
Sbjct: 83  YSDMPAGSFVTSIISPDEQQSLQQQQHQQHSDNNNNLSSLFINVPPSHDHQPDSTPIFNQ 142

Query: 136 DFSS------GFSSTFPNVNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLSAYAGY 189
           DFSS      GFSS          S NN       TY+    +  +   LP D  +   +
Sbjct: 143 DFSSQCHLEEGFSSMTSGGGFWSCSSNN-------TYNQQLKHVIQNNVLPHDFPSNISH 195

Query: 190 STDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGSYFGFDS 249
           S+D N         + Q +W T  S++ LMGF + +++TS  GF+++GS S GSYFGFDS
Sbjct: 196 SSDYN---------MSQCSW-TDSSTSGLMGFEDQTTMTS--GFESVGS-SSGSYFGFDS 242

Query: 250 SDYVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF 282
            +YV HSPLFS MPPVSD VPDGF LGSS+YFF
Sbjct: 243 GEYV-HSPLFSRMPPVSDMVPDGFDLGSSAYFF 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862201|emb|CAN80471.1| hypothetical protein VITISV_025283 [Vitis vinifera]

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 148/271 (54%), Positives = 162/271 (59%), Gaps = 47/271 (17%)

Query: 28  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS 87
           RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRG RARTNFVYS
Sbjct: 346 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYS 405

Query: 88  DMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPN 147
           DMPPGSSVTSIISPDE      +S H   P + P   PNL   P     F+  F   FP 
Sbjct: 406 DMPPGSSVTSIISPDE--SLPDFSSHFVPPTTQPNPNPNLFFNPTECHQFA--FQGQFPT 461

Query: 148 VNDDHYSHNNNALSYSYTYDDNNS----------------NSTELPPLPSDLSAYAGYST 191
                     N+  YS  Y +                   N+ +LPP PS +        
Sbjct: 462 --------ETNSWDYSNLYQEQPLVDNMNGTTTTTNNQFYNANDLPPFPSQV-------- 505

Query: 192 DSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGSYFGFDSSD 251
            S+ +  S + E+ Q  W  S S   L GF E    TS N FD+ G   GGSY GFDS+ 
Sbjct: 506 -SDQLPSSGF-EMEQATWGDSTS---LAGFSEQR--TSPNEFDSAG---GGSYLGFDSTQ 555

Query: 252 YVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF 282
           YV HSPLF  MPPVSDT PDGF LGSSSYFF
Sbjct: 556 YV-HSPLFGRMPPVSDTPPDGFDLGSSSYFF 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451649|ref|XP_002276221.1| PREDICTED: ethylene-responsive transcription factor LEP-like [Vitis vinifera]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 148/271 (54%), Positives = 162/271 (59%), Gaps = 47/271 (17%)

Query: 28  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS 87
           RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRG RARTNFVYS
Sbjct: 21  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYS 80

Query: 88  DMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPN 147
           DMPPGSSVTSIISPDE      +S H   P + P   PNL   P     F+  F   FP 
Sbjct: 81  DMPPGSSVTSIISPDE--SLPDFSSHFVPPTTQPNPNPNLFFNPTECHQFA--FQGQFPT 136

Query: 148 VNDDHYSHNNNALSYSYTYDDNNS----------------NSTELPPLPSDLSAYAGYST 191
                     N+  YS  Y +                   N+ +LPP PS +        
Sbjct: 137 --------ETNSWDYSNLYQEQPLVDNMNGTTTTTNNQFYNANDLPPFPSQV-------- 180

Query: 192 DSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGSYFGFDSSD 251
            S+ +  S + E+ Q  W  S S   L GF E    TS N FD+ G   GGSY GFDS+ 
Sbjct: 181 -SDQLPSSGF-EMEQATWGDSTS---LAGFSE--QRTSPNEFDSAG---GGSYLGFDSTQ 230

Query: 252 YVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF 282
           YV HSPLF  MPPVSDT PDGF LGSSSYFF
Sbjct: 231 YV-HSPLFGRMPPVSDTPPDGFDLGSSSYFF 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082248|emb|CBI21253.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/255 (54%), Positives = 155/255 (60%), Gaps = 60/255 (23%)

Query: 28  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS 87
           RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRG RARTNFVYS
Sbjct: 21  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYS 80

Query: 88  DMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPN 147
           DMPPGSSVTSIISPDE                   S P+              FSS FP 
Sbjct: 81  DMPPGSSVTSIISPDE-------------------SLPD--------------FSSHFPL 107

Query: 148 VNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQG 207
           V++ + +       +         N+ +LPP PS +         S+ +  S + E+ Q 
Sbjct: 108 VDNMNGTTTTTNNQF--------YNANDLPPFPSQV---------SDQLPSSGF-EMEQA 149

Query: 208 AWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGSYFGFDSSDYVQHSPLFSSMPPVSD 267
            W  S S   L GF E    TS N FD+ G   GGSY GFDS+ YV HSPLF  MPPVSD
Sbjct: 150 TWGDSTS---LAGFSE--QRTSPNEFDSAG---GGSYLGFDSTQYV-HSPLFGRMPPVSD 200

Query: 268 TVPDGFHLGSSSYFF 282
           T PDGF LGSSSYFF
Sbjct: 201 TPPDGFDLGSSSYFF 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498625|ref|XP_003518150.1| PREDICTED: ethylene-responsive transcription factor LEP-like [Glycine max]

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/291 (49%), Positives = 167/291 (57%), Gaps = 52/291 (17%)

Query: 11  KKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDR 70
           +  TQQ  +T   + G R+LGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDR
Sbjct: 17  QTTTQQDHET---AWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDR 73

Query: 71  AARSMRGPRARTNFVYSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQ 130
           AARSMRG RARTNFVY D PPGSSVTSI+SPDE   Q Q   H           PN   Q
Sbjct: 74  AARSMRGSRARTNFVYPDTPPGSSVTSILSPDE---QTQTQIHQAQEELSSLFNPNPFAQ 130

Query: 131 PFLNQDFS----SGFSSTFPNVNDDHYSHNNNALSYSYTYDDNNSN------------ST 174
           P  N  FS    SG ++T P  +       +   SY+Y Y +  ++             T
Sbjct: 131 PDPNPHFSLCGYSGVTNT-PTFSATEEIAPSGGYSYNYGYTEGGTSMESSHFKLFDDGET 189

Query: 175 ELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFD 234
           ELPPLP D+++  GY             E+G G +       N  GF +PS       F 
Sbjct: 190 ELPPLPPDITSSMGY-------------EMGNGFY------GNDAGFSDPS-------FG 223

Query: 235 TMGSGSGGSYFGFDSSDYVQHSPLFSSMPPVSDTVP---DGFHLGSSSYFF 282
              +GSG  Y GF S DYV HSPLFS+MPPVSD V    +GF L SSS+FF
Sbjct: 224 ANATGSGYPYSGFGSGDYVVHSPLFSAMPPVSDNVSTGHEGFDLASSSFFF 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644774|gb|ACU22889.1| unknown [Glycine max]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/291 (49%), Positives = 166/291 (57%), Gaps = 52/291 (17%)

Query: 11  KKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDR 70
           +  TQQ  +T   + G R+LGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDR
Sbjct: 17  QTTTQQDHET---AWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDR 73

Query: 71  AARSMRGPRARTNFVYSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQ 130
           AARSMRG RARTNFVY D PPGSSVTSI+SPDE   Q Q   H           PN   Q
Sbjct: 74  AARSMRGSRARTNFVYPDTPPGSSVTSILSPDE---QTQTQIHQAQEELSSLFNPNPFAQ 130

Query: 131 PFLNQDFS----SGFSSTFPNVNDDHYSHNNNALSYSYTYDDNNSN------------ST 174
           P  N  FS    SG ++T P  +       +   SY+Y Y +  ++             T
Sbjct: 131 PDPNPHFSLCGYSGVTNT-PTFSATEEIAPSGGYSYNYGYTEGGTSMESSHFKLFDDGET 189

Query: 175 ELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFD 234
           ELPPLP D+++  GY             E+G G +       N  GF +PS       F 
Sbjct: 190 ELPPLPPDITSSMGY-------------EMGNGFY------GNDAGFSDPS-------FG 223

Query: 235 TMGSGSGGSYFGFDSSDYVQHSPLFSSMPPVSDTVP---DGFHLGSSSYFF 282
              +GSG  Y GF S DYV HSPLFS+MPPVSD V    +GF L SS +FF
Sbjct: 224 ANATGSGYPYSGFGSGDYVVHSPLFSAMPPVSDNVSTGHEGFDLASSPFFF 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543493|ref|XP_002512809.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223547820|gb|EEF49312.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/278 (52%), Positives = 171/278 (61%), Gaps = 47/278 (16%)

Query: 23  GSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRART 82
           GSNG RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRART
Sbjct: 22  GSNGGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRART 81

Query: 83  NFVYSDMPPGSSVTSIISPDEPQQQHQYS-------------FHIPSPNSHPRSEPNLQH 129
           NFVYSDMP GSSVTSIISPD+ QQQ                 F +P  +  P S P L  
Sbjct: 82  NFVYSDMPAGSSVTSIISPDDQQQQMLSLQQQQQQQEQQQSIFVLPQSHDQPDSTP-LFF 140

Query: 130 QPFLNQ-DFSSGFSSTFPNVNDDHYSHNNNALSYSYTYDDNNS---NSTELPPLPSDLSA 185
             F +Q  +S  FSS+  NV D  + ++    +Y + + D       + ELPP PSD+S+
Sbjct: 141 NDFSSQCHYSEEFSSSMANVADSTWGYST---TYQHHHQDQERPIITNNELPPFPSDISS 197

Query: 186 YAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGSYF 245
            +  +  S   + S YD+  Q          + +GF +       NGFD          F
Sbjct: 198 LSSSAQSSFQYNGSGYDQTSQ----------DFLGFED----AMTNGFD----------F 233

Query: 246 G-FDSSDYVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF 282
           G FDS +YV HSP+FS MPPVSDTVPDG  LGSS YFF
Sbjct: 234 GRFDSGEYV-HSPMFSRMPPVSDTVPDGLDLGSSGYFF 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559504|ref|XP_003548039.1| PREDICTED: ethylene-responsive transcription factor LEP-like [Glycine max]

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/283 (49%), Positives = 161/283 (56%), Gaps = 63/283 (22%)

Query: 26  GNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFV 85
           G R+LGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYD+AARSMRG RARTNF+
Sbjct: 29  GGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDKAARSMRGSRARTNFI 88

Query: 86  YSDMPPGSSVTSIISPDEPQQQ--HQYSFHIPS---PNSHPRSEPNLQHQPFLNQDFSSG 140
           Y D PPGSSVTSI+SPDE  Q   HQ    + S   PN  P+ +PN Q        FS  
Sbjct: 89  YPDTPPGSSVTSILSPDEQTQTQIHQAQEELSSLFNPNPFPQPDPNPQ--------FSLC 140

Query: 141 FSSTFPNV----------------NDDHYSHNNNALSYSY--TYDDNNSNSTELPPLPSD 182
             S  PN                     Y+     +  S+   +DD     T+LPPLP D
Sbjct: 141 GFSGIPNTPTFSATEEIASSGGYSYSYGYTEGGTGVESSHFKLFDDGE---TQLPPLPPD 197

Query: 183 LSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGG 242
           +++  GY      MS+  Y               N +GF +PS   +        SGSG 
Sbjct: 198 ITSSMGYE-----MSNGLY--------------GNDVGFSDPSCGAN-------ASGSGY 231

Query: 243 SYFGFDSSDYVQHSPLFSSMPPVSDTVP---DGFHLGSSSYFF 282
            Y GF+S DYV HSPLFS+MP VSD V    +GF LGSSSYFF
Sbjct: 232 PYSGFESGDYVVHSPLFSAMPSVSDNVATGHEGFDLGSSSYFF 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443494|ref|XP_002270612.1| PREDICTED: ethylene-responsive transcription factor ERF087-like [Vitis vinifera]

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 143/292 (48%), Positives = 175/292 (59%), Gaps = 45/292 (15%)

Query: 2   NSSSSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTA 61
           NSSSS+KIK+K  QQ Q    G+   +FLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTA
Sbjct: 9   NSSSSSKIKRKNQQQQQQQQPGTPA-KFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTA 67

Query: 62  EEAALAYDRAARSMRGPRARTNFVYSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHP 121
           EEAALAYDRAARSMRG RARTNFVYSDMPPGSSVT+IISPDE Q      F IP   ++P
Sbjct: 68  EEAALAYDRAARSMRGVRARTNFVYSDMPPGSSVTTIISPDESQNDISALF-IPPQQNNP 126

Query: 122 RSEPNLQHQPFLNQDFSSGFSST---FPNVNDDHYSH------NNNALSYSYTYDDNNSN 172
            ++      P     F S FS      P      +          + +SY ++ +D    
Sbjct: 127 TNQLVFSQDPVNACQFPSEFSGAGGWVPGSVTGGFQQAVTGVIGGSGVSYQFSGED---- 182

Query: 173 STELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNG 232
            T+LPPLP D+S            + S   ++GQG W    + A+ +GF E ++     G
Sbjct: 183 -TQLPPLPPDIS------------TPSFGSDMGQGVW----NEASFLGFSEQTT-----G 220

Query: 233 FDTMGSGSGGSYFG-FDSSDYVQHSPLFSSMPPVSDTVPDGFHLGS-SSYFF 282
            D +   SGGS FG  DS ++VQH+PLF  + P   +  + F LGS SSYFF
Sbjct: 221 LDLV---SGGSCFGMMDSGEFVQHNPLFGRITP---SAINEFDLGSTSSYFF 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075437|ref|XP_002304632.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222842064|gb|EEE79611.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/279 (48%), Positives = 158/279 (56%), Gaps = 47/279 (16%)

Query: 28  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS 87
           RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRG +ARTNFVYS
Sbjct: 39  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYS 98

Query: 88  DMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPN 147
           DMPP SSVTSIISPDE Q      F  P  N   +++ N Q + F +QD     +  + N
Sbjct: 99  DMPPASSVTSIISPDESQHDISALFAPPPQNHAHQNDTNCQ-KLFFSQDQYPFNAYAYGN 157

Query: 148 VNDDHYSHN---------------------NNALSYSYTYDD---NNSNSTELPPLPSDL 183
            N +  +                       NNA S+    +    +N ++ ELPPLP D+
Sbjct: 158 SNSNLLTGGEGWVQGCGAGAADGPGGSYEPNNAGSFGVATEPIYFSNKDNIELPPLPPDV 217

Query: 184 SAYAGYSTDSNVMSHSSYDELGQGAWSTSESSANLMGFCEPSSVTSNNGFDTMGSGSGGS 243
           ++ + Y +D   M H        G W    + A   GF E      NNG    G    GS
Sbjct: 218 NS-SCYGSD---MDH--------GFW----NDAGFFGFQEEQ---KNNG---NGLEISGS 255

Query: 244 YFGFDSSDYVQHSPLFSSMPPVSDTVPDGFHLGSSSYFF 282
             GFDS+D+ QH  LF  MP VSDTV D   LGSSS  +
Sbjct: 256 SLGFDSNDFGQHGSLFEIMPSVSDTVTDELDLGSSSTLY 294

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2159068	211	LEP "LEAFY PETIOLE" [Arabidops	0.521	0.696	0.537	4.7e-44
TAIR|locus:2010529	245	AT1G28160 [Arabidopsis thalian	0.691	0.795	0.381	5e-28
TAIR|locus:2182993	348	PUCHI [Arabidopsis thaliana (t	0.343	0.278	0.508	1.7e-20
TAIR|locus:2010346	219	AT1G12890 [Arabidopsis thalian	0.602	0.776	0.368	2.1e-20
TAIR|locus:2024076	306	DRNL "DORNROSCHEN-like" [Arabi	0.425	0.392	0.414	2.5e-17
TAIR|locus:2031890	328	ESR1 "ENHANCER OF SHOOT REGENE	0.549	0.472	0.353	5.3e-17
TAIR|locus:2008021	225	ERF3 "ethylene responsive elem	0.393	0.493	0.406	4.7e-16
TAIR|locus:2032510	189	ERF12 "ERF domain protein 12"	0.407	0.608	0.393	9.8e-16
TAIR|locus:2032500	166	ERF11 "ERF domain protein 11"	0.202	0.343	0.561	2.2e-15
TAIR|locus:2009655	185	ERF8 "ethylene response factor	0.262	0.4	0.506	3e-14

TAIR|locus:2159068 LEP "LEAFY PETIOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 85/158 (53%), Positives = 100/158 (63%)

Query:    28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNFVYS 87
             RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDT             SMRG RARTNFVYS
Sbjct:    19 RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNFVYS 78

Query:    88 DMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPN 147
             DMPP SSVTSI+SPD+P          P P + P ++P + +    NQ  S+      P+
Sbjct:    79 DMPPSSSVTSIVSPDDPPPP-------PPPPAPPSNDP-VDYMMMFNQYSSTDSPMLQPH 130

Query:   148 VND-DHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLS 184
              +  D Y    +  S SY Y +++SN  ELPPLPSDLS
Sbjct:   131 CDQVDSYMFGGSQSSNSYCYSNDSSN--ELPPLPSDLS 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010030 "positive regulation of seed germination" evidence=IMP

TAIR|locus:2010529 AT1G28160 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 82/215 (38%), Positives = 110/215 (51%)

Query:    28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNFVYS 87
             +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDT             S+RG  ARTNFVYS
Sbjct:    38 KYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYS 97

Query:    88 DMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPN 147
             DMP GSSVTS +SPDE Q+     F+ PS      S  N       N  +SS   +   N
Sbjct:    98 DMPRGSSVTSFVSPDESQRFISELFNPPSQLEATNSNNNNN-----NNLYSS---TNNQN 149

Query:   148 VNDDHYSHNNNALSYSYTYDDNNSNST----ELPPLPSDLSAYAGYSTDSNVMSHSSYDE 203
              N   +S+N         Y    SN+     ELPPLP        +  +  +    SY  
Sbjct:   150 QNSIEFSYNGWPQEAECGYQSITSNAEHCDHELPPLPPSTC----FGAELRIPETDSYWN 205

Query:   204 LGQGAWSTSESSANLMGFCEPSSV--TSNNGFDTM 236
             +   +  T   +  L GF + +S+  +   GF+++
Sbjct:   206 VAHASIDTF--AFELDGFVDQNSLGQSGTEGFNSL 238

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2182993 PUCHI [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 59/116 (50%), Positives = 68/116 (58%)

Query:    28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNFVYS 87
             RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDT             SMRG +ARTNFVY+
Sbjct:    54 RFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYT 113

Query:    88 DMPPGSSVTSIISPD------EPQQQHQYSFHIPSPNSHPR----SEPNLQ--HQP 131
                P    T + +P+       P   +Q SF    PNS P+      P+ Q  HQP
Sbjct:   114 ---PTDVHTILTNPNLHSLIVSPYNNNQ-SF---LPNSSPQFVIDHHPHYQNYHQP 162

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009908 "flower development" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0010432 "bract development" evidence=IGI;IMP

GO:0010451 "floral meristem growth" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IGI;IMP

TAIR|locus:2010346 AT1G12890 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 69/187 (36%), Positives = 94/187 (50%)

Query:    28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNFVYS 87
             ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDT             S+ G  A TNF Y+
Sbjct:    20 KYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAFAYDVAARSISGSLATTNFFYT 79

Query:    88 DMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDF-SSGFSSTFP 146
             +       TS+     PQQ  +   H+   +S   S   LQ QPF N  F +   SS+F 
Sbjct:    80 EN------TSL--ERHPQQSLEP--HMTWGSS---SLCLLQDQPFENNHFVADPISSSFS 126

Query:   147 NVNDDHYSHNNNALSYSYTYDDNNSNSTELPPLPSDLSAYAGYSTDSNVMSHSSYDELGQ 206
                +   ++  N  S+ Y   D+   S E+  LP+D+S    +     V  H + D +  
Sbjct:   127 QKQESS-TNLTNTFSHCYNDGDHVGQSKEIS-LPNDMSNSL-FGHQDKVGEHDNADHMKF 183

Query:   207 GAWSTSE 213
             G+  + E
Sbjct:   184 GSVLSDE 190

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2024076 DRNL "DORNROSCHEN-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 51/123 (41%), Positives = 62/123 (50%)

Query:    28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNFVYS 87
             R+ GVRRRPWGRYAAEIRDP +KER WLGTFDT             +MRG +ARTNFVY 
Sbjct:    57 RYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYP 116

Query:    88 DMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSSTFPN 147
              MP   S    I    P         + S +  P +     + P    + +     +F N
Sbjct:   117 -MPSLDSYHHRIFSSPPMNMFLLRDVLNSQSLSPLT--TFAYPPCNLSNVNDVVHESFTN 173

Query:   148 VND 150
             VND
Sbjct:   174 VND 176

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

TAIR|locus:2031890 ESR1 "ENHANCER OF SHOOT REGENERATION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 58/164 (35%), Positives = 78/164 (47%)

Query:    28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNFVYS 87
             R+ GVRRRPWGRYAAEIRDP +KER WLGTFDT             + RG +ARTNF Y 
Sbjct:    56 RYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYP 115

Query:    88 D---MP-PGSSVTSI-ISPDEPQQQHQYSFHIPSPNSH--PRSEPNLQHQPFLNQDFSSG 140
                 MP P  S ++   SP              + N +  P ++     Q    +D S  
Sbjct:   116 TAVIMPEPRFSFSNKKSSPSARCPLPSLPLDSSTQNFYGAPAAQRIYNTQSIFLRDASCS 175

Query:   141 FSSTFPNVNDDHYSHNNNALSYS--YTYDDNNSNSTELPPLPSD 182
                T P  N  + S ++ + S +   +Y +N +N +  P   SD
Sbjct:   176 SRKTTPYNNSFNGSSSSYSASKTACVSYSENENNESFFPEESSD 219

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0010084 "specification of organ axis polarity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2008021 ERF3 "ethylene responsive element binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 48/118 (40%), Positives = 64/118 (54%)

Query:    28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNF-VY 86
             RF GVR+RPWGR+AAEIRDP  K R WLGTFD+             ++RGP+A+TNF + 
Sbjct:    27 RFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPID 86

Query:    87 SDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQPFLNQDFSSGFSST 144
             S  PP  ++    +    Q Q+Q     P  + H     + Q  P +N+  SS  SST
Sbjct:    87 SSSPPPPNLR--FNQIRNQNQNQVD---PFMD-HRLFTDHQQQFPIVNRPTSSSMSST 138

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2032510 ERF12 "ERF domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 50/127 (39%), Positives = 65/127 (51%)

Query:    29 FLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNFV--- 85
             + GVR+RPWGRYAAEIRDP  K R WLGTFDT              +RG +A+TNF    
Sbjct:    12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPL 71

Query:    86 ---YSDMPPGSSVTSIISPDEPQQQHQYSFHIPSPNSHPRSEPNLQHQP-FLN----QDF 137
                 + +P   S  +  + ++P Q  Q  F  P P   P S+ + QH   FL      D 
Sbjct:    72 SLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVP-PSSDHHHQHHRIFLRTGVLNDK 130

Query:   138 SSGFSST 144
             +S +SST
Sbjct:   131 TSDYSST 137

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2032500 ERF11 "ERF domain protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 32/57 (56%), Positives = 36/57 (63%)

Query:    28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNF 84
             R+ GVR+RPWGRYAAEIRDP  K R WLGTFDT               RG +A+TNF
Sbjct:    19 RYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNF 75

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2009655 ERF8 "ethylene response factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 38/75 (50%), Positives = 43/75 (57%)

Query:    28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNF-VY 86
             R+ GVR+RPWGRYAAEIRDP  K R WLGTFDT               RG +A+TNF V 
Sbjct:    30 RYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVI 89

Query:    87 SDMPPGSSVTSIISP 101
                 P  S T + SP
Sbjct:    90 VGSSPTQSSTVVDSP 104

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ERF67	AP2/ERF domain-containing transcription factor (293 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	CIPK15	SubName- Full=CBL-interacting protein kinase 15; (428 aa)							•		0.702

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-31
pfam00847	53	pfam00847, AP2, AP2 domain	2e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (294), Expect = 1e-33
 Identities = 40/61 (65%), Positives = 46/61 (75%)

Query: 28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS 87
          ++ GVR+RPWG++ AEIRDPS  +R WLGTFDTAEEAA AYDRAA   RG  AR NF  S
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 88 D 88
           
Sbjct: 61 L 61

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  110 bits (277), Expect = 4e-31
 Identities = 38/57 (66%), Positives = 44/57 (77%)

Query: 28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNF 84
          ++ GVR+RPWG++ AEIRDPS   R WLGTFDTAEEAA AYDRAA  +RG  A  NF
Sbjct: 2  KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 28 RFLGVRRRP-WGRYAAEIRDPST--KERHWLGTFDTAEEAALAYDRAARSMRG 77
           + GVR    WGR+ AEIRDP    K+R  LGTF T EEAA A   A   +RG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.83
PHA00280	121	putative NHN endonuclease	99.59
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.1

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=6.9e-21  Score=140.82  Aligned_cols=63  Identities=63%  Similarity=1.012  Sum_probs=60.7

Q ss_pred             ceeEEEeCCCCcEEEEEeCCCCCceEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 037093           28 RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYSDMP   90 (282)
Q Consensus        28 ~YRGV~~r~~GKW~A~I~~~~~gKri~LGtFdTeEEAArAYD~AAikl~G~~A~lNFp~sdy~   90 (282)
                      +||||+++++|||+|+|+++.++++++||+|+|+||||+|||+|+++++|..+++|||.++|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999988999999999988999999999999999999999999999999999999999986

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.83  E-value=1.4e-20  Score=137.44  Aligned_cols=61  Identities=64%  Similarity=1.039  Sum_probs=57.3

Q ss_pred             CceeEEEeCCCCcEEEEEeCCCCCceEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 037093           27 NRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS   87 (282)
Q Consensus        27 S~YRGV~~r~~GKW~A~I~~~~~gKri~LGtFdTeEEAArAYD~AAikl~G~~A~lNFp~s   87 (282)
                      |+||||+++++|||+|+|++...++++|||+|+|+||||+|||+|+++++|.++++|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988999999999955599999999999999999999999999999999999864

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.59  E-value=2.1e-15  Score=126.11  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             CCCChhHhhhhhhhcCCCCCCCCCCCceeEEEeCC-CCcEEEEEeCCCCCceEeecCCCCHHHHHHHHHHHHHHhcCCCC
Q 037093            2 NSSSSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRP-WGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRA   80 (282)
Q Consensus         2 ~s~Ss~~~~~~q~rq~~~~~~~~ntS~YRGV~~r~-~GKW~A~I~~~~~gKri~LGtFdTeEEAArAYD~AAikl~G~~A   80 (282)
                      +.+++++.+...++..++..++.++|+||||++.+ .|||+|+|++  ++|+++||.|+++|+|+.||+ ++++++|++|
T Consensus        42 nri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa  118 (121)
T PHA00280         42 DALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFA  118 (121)
T ss_pred             CcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhccc
Confidence            45677888888888887778889999999999764 7999999998  999999999999999999997 7889999998


Q ss_pred             C
Q 037093           81 R   81 (282)
Q Consensus        81 ~   81 (282)
                      +
T Consensus       119 ~  119 (121)
T PHA00280        119 R  119 (121)
T ss_pred             c
Confidence            5

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.10  E-value=1.2e-10  Score=82.88  Aligned_cols=52  Identities=33%  Similarity=0.429  Sum_probs=45.0

Q ss_pred             CceeEEEeCC-CCcEEEEEeCCCC---CceEeecCCCCHHHHHHHHHHHHHHhcCC
Q 037093           27 NRFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRGP   78 (282)
Q Consensus        27 S~YRGV~~r~-~GKW~A~I~~~~~---gKri~LGtFdTeEEAArAYD~AAikl~G~   78 (282)
                      |+|+||++.+ .++|+|+|++...   +|+++||.|+++|||++|+++++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999664 7999999998321   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-09
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-09

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 29 FLGVRRRPWGRYAAEIRDPSTK-ERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNF 84
          + GVR+RPWG++AAEIRDP+    R WLGTF+T              MRG RA  NF
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 29 FLGVRRRPWGRYAAEIRDPSTK-ERHWLGTFDTXXXXXXXXXXXXXSMRGPRARTNF 84
          + GVR+RPWG++AAEIRDP+    R WLGTF+T              MRG RA  NF
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-37

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  126 bits (319), Expect = 1e-37
 Identities = 39/58 (67%), Positives = 46/58 (79%), Gaps = 1/58 (1%)

Query: 28 RFLGVRRRPWGRYAAEIRDPSTK-ERHWLGTFDTAEEAALAYDRAARSMRGPRARTNF 84
           + GVR+RPWG++AAEIRDP+    R WLGTF+TAE+AALAYDRAA  MRG RA  NF
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.88
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	94.32
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	86.75

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.88  E-value=1.3e-23  Score=155.71  Aligned_cols=60  Identities=65%  Similarity=1.105  Sum_probs=56.6

Q ss_pred             ceeEEEeCCCCcEEEEEeCCCC-CceEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 037093           28 RFLGVRRRPWGRYAAEIRDPST-KERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS   87 (282)
Q Consensus        28 ~YRGV~~r~~GKW~A~I~~~~~-gKri~LGtFdTeEEAArAYD~AAikl~G~~A~lNFp~s   87 (282)
                      +||||+++++|||+|+|+++.. +++||||+|+|+||||+|||+|+++++|.++++|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            7999999889999999999764 68999999999999999999999999999999999964

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=94.32  E-value=0.0004  Score=58.69  Aligned_cols=64  Identities=8%  Similarity=-0.041  Sum_probs=41.4

Q ss_pred             CCCChhHhhhhhhhcCCCCCCCCCCCceeEEEeCCCCcEEEEEeCCCCCceEeecCCCCHHHHHHHHH
Q 037093            2 NSSSSTKIKKKQTQQGQDTTGGSNGNRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYD   69 (282)
Q Consensus         2 ~s~Ss~~~~~~q~rq~~~~~~~~ntS~YRGV~~r~~GKW~A~I~~~~~gKri~LGtFdTeEEAArAYD   69 (282)
                      |.+++++++...++...+...+... ..+||.+.+.++|.+.|..  . +.++||.|++.+|||++|.
T Consensus        83 n~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           83 NLSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CCGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             CCHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            3456666666655544332222221 2466655334679999987  4 6778999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=86.75  E-value=0.28  Score=37.77  Aligned_cols=28  Identities=18%  Similarity=0.172  Sum_probs=21.6

Q ss_pred             CCCCceeEEEeCC-CCcEEEEEeCCCCCceE
Q 037093           24 SNGNRFLGVRRRP-WGRYAAEIRDPSTKERH   53 (282)
Q Consensus        24 ~ntS~YRGV~~r~-~GKW~A~I~~~~~gKri   53 (282)
                      ..+|+|+||++.+ .+.|.|+-.+  ++++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            4578999999775 6999999987  55443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-30

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 39/58 (67%), Positives = 46/58 (79%), Gaps = 1/58 (1%)

Query: 28 RFLGVRRRPWGRYAAEIRDPSTKE-RHWLGTFDTAEEAALAYDRAARSMRGPRARTNF 84
           + GVR+RPWG++AAEIRDP+    R WLGTF+TAE+AALAYDRAA  MRG RA  NF
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.89

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=3.1e-24  Score=158.01  Aligned_cols=60  Identities=65%  Similarity=1.108  Sum_probs=55.6

Q ss_pred             ceeEEEeCCCCcEEEEEeCCC-CCceEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 037093           28 RFLGVRRRPWGRYAAEIRDPS-TKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYS   87 (282)
Q Consensus        28 ~YRGV~~r~~GKW~A~I~~~~-~gKri~LGtFdTeEEAArAYD~AAikl~G~~A~lNFp~s   87 (282)
                      +||||+++++|||+|+|+++. ++++||||+|+|+||||+|||+|+++++|.++++|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            699999988999999999864 568899999999999999999999999999999999964