Citrus Sinensis ID: 037143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
GIKNLREKKETYTWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKTVPQRSYKVISD
Secondary Structure (PSIPRED)
cHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccHHHHHHHcccccHHHHccccccccHHHHHHHcccccccHHHHHHHHcHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccHHHHHcccHHHccccccHHHHHHHHcHHHHHHHHHHHccHHHHccccccccHHHHHHHccHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcc
Coil and Loop (DISEMBL)
GIKNLREKKETYTWAIQVLNELvdhrnpdqykyvyngqdpristfgqdvnaftaretpldpstykkknarrsrrkeTPILVAAKMGVTEMVKKILDTFpvamwdldpaEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKygdhlpllfpgaaLQVQWEIKWFQHVKklmprhfftrynddgktpdevFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFatsaavpggvdqgsgkpilenepvfNIFAISSLVALCSSVTALVLFLTILTSRyqendfakdlpRKLLLGLTTLFTSIVAILVSFCSghsfiltnelrsaaypiyaatclPVTFFALAQLPLYFDLMLAILKtvpqrsykvisd
Flexible Loop (DISEMBL)
giknlrekketYTWAIQVLNelvdhrnpDQYKYVYNGQDPRISTFGQDVNAFtaretpldpstykkknarrsrrketpilvaakmgvtEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILktvpqrsykvisd
Low Complexity Region (SEG)
GIKNLREKKETYTWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKlllglttlftSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKTVPQRSYKVISD
Disordered region (IsUnstruct)
**********TYTWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAF**************************ILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDG****EVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKTVPQR*******
Disordered Region (DISOPRED)
GIKNLREKKETYTWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLD*************RKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKTVPQRSYKVI**
Disordered Region (DISEMBL)
********KETYTWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPS************KETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKTVPQ********
Disordered Region (DISPRO)
GIKNLREKKETYTWAIQVLNELVDHRNPDQYKYVYNGQ*********************DPST********SRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKTVPQRSYKVISD
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GxxxxxxxxxxxxxxxxxxxxxVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKTVPQRSYKVISD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.638	0.413	0.241	5e-09
O44997	1425	Death-associated protein	yes	no	0.212	0.056	0.340	0.0002

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 123/298 (41%), Gaps = 54/298 (18%)

Query: 71  RSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLS 130
           RS  K   + +AA+ G  E++K +L   P     +D   +  L +A++ + + V  LLL 
Sbjct: 229 RSNNK-NALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLD 287

Query: 131 RKALGQTIFWQVDNQGNSALHLAAKYG---------------------DHLPLLFPGAAL 169
                  I  Q D   N+ALH+A +                       DH   L     L
Sbjct: 288 ADP---AIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGL 344

Query: 170 QVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDE-------VFTESH-------------- 208
            +  E  +   +K+ + R    R N+  +  DE       +  + H              
Sbjct: 345 PLSEESSY---IKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVH 401

Query: 209 ---RDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNI 265
              ++L K  RE +   + S +VVA L +TVAFA    VPGG D   G  ++     F I
Sbjct: 402 NISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRASFKI 460

Query: 266 FAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSF 323
           F I + +AL +S+  +V+ +T++    +      ++  KL+  L ++ TS+  +  S+
Sbjct: 461 FFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMW-LASMCTSVAFLASSY 517

Arabidopsis thaliana (taxid: 3702)

>sp|O44997|DAPK_CAEEL Death-associated protein kinase dapk-1 OS=Caenorhabditis elegans GN=dapk-1 PE=2 SV=2

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 7/88 (7%)

Query: 71  RSRRKETPILVAAKMGVTEMVKKILD-TFPVAMWDLDPAEKNILLLAIENRRTSVYNLLL 129
           R+ R+ETP+ VAA  G  + V+ +LD   P+   + D   K  L++A+EN    + ++L+
Sbjct: 521 RNIREETPLHVAAARGHVDCVQALLDANSPIDAVEQDG--KTALIIALENGNVDIASILI 578

Query: 130 SRKALGQTIFWQVDNQGNSALHLAAKYG 157
           +    G  I    D+ G++ALH+A+K+G
Sbjct: 579 TN---GCDIN-HADHHGDTALHIASKHG 602

Negative regulator of barrier repair and innate immune responses to wounding. Appears to act downstream from or in parallel to muscarinic signaling in the regulation of autophagy.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
359495445	835	PREDICTED: uncharacterized protein LOC10	0.989	0.452	0.555	1e-120
255554112	786	ankyrin repeat-containing protein, putat	0.824	0.400	0.673	1e-119
224066419	360	predicted protein [Populus trichocarpa]	0.835	0.886	0.638	1e-118
359495447	733	PREDICTED: uncharacterized protein LOC10	0.986	0.514	0.513	1e-115
357447499	693	Serine/threonine protein phosphatase 6 r	0.960	0.529	0.567	1e-114
359479721	749	PREDICTED: uncharacterized protein LOC10	0.986	0.503	0.508	1e-114
359479729	826	PREDICTED: uncharacterized protein LOC10	0.992	0.458	0.496	1e-112
356546480	652	PREDICTED: uncharacterized protein LOC10	0.963	0.564	0.559	1e-110
356546544	725	PREDICTED: uncharacterized protein LOC10	0.981	0.517	0.505	1e-109
356546478	647	PREDICTED: uncharacterized protein LOC10	0.955	0.564	0.563	1e-109

>gi|359495445|ref|XP_002274340.2| PREDICTED: uncharacterized protein LOC100259671 [Vitis vinifera]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/396 (55%), Positives = 281/396 (70%), Gaps = 18/396 (4%)

Query: 2   IKNLREKKETYTWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARE----- 56
           IK +  KKE + W+IQ++N+L+D  + +       G  P  +    + +AF   E     
Sbjct: 442 IKKIHSKKEKHLWSIQIMNKLLDSSSSEYDSSA--GSQPLTTKEADETDAFKEIEANDTK 499

Query: 57  -----TPLDPSTYKKKNARRSR------RKETPILVAAKMGVTEMVKKILDTFPVAMWDL 105
                +  +    KKKN  +++      +KETPIL+AAK G+ EMV +IL+ FPVA+ D+
Sbjct: 500 RMKTSSENEKRQQKKKNDEKAKETDEMAKKETPILIAAKNGIVEMVVRILELFPVAIHDM 559

Query: 106 DPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFP 165
           +  +KNI+LLA+ENR+T VY LLL R+ L  +IF  VD++GNSALHLAAK  D  P   P
Sbjct: 560 NSEKKNIVLLAVENRQTHVYALLLKREILKDSIFHVVDHEGNSALHLAAKLNDRHPWRIP 619

Query: 166 GAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSES 225
           GAALQ+QWEIKW++ VK  MP HFF RYN++ KT  EVFTESH DLV +G +WL  TS S
Sbjct: 620 GAALQMQWEIKWYEFVKNSMPIHFFVRYNNNNKTAREVFTESHADLVDKGGKWLNDTSNS 679

Query: 226 CSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFL 285
           CSVVAALI+TVAFATSA VPGGV +G G P LEN+P FN+F+ISSL+ALC SVT++V+FL
Sbjct: 680 CSVVAALIATVAFATSATVPGGVKEGIGVPTLENQPAFNVFSISSLIALCFSVTSVVMFL 739

Query: 286 TILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAA 345
            ILTSR+QE DF  DLP+KLL GL++LF SI AILVSFC+GH F+L +EL+  A+PIYA 
Sbjct: 740 AILTSRHQEKDFGSDLPKKLLFGLSSLFISIAAILVSFCAGHFFVLKDELKYFAFPIYAV 799

Query: 346 TCLPVTFFALAQLPLYFDLMLAILKTVPQRSYKVIS 381
           TCLPVTFFA+ Q PLY DL+ A  K VPQRSY  +S
Sbjct: 800 TCLPVTFFAVMQFPLYLDLICATFKKVPQRSYVAVS 835

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554112|ref|XP_002518096.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223542692|gb|EEF44229.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/315 (67%), Positives = 263/315 (83%)

Query: 64  YKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTS 123
           ++KK  ++ R+KETPILVAAK+G+TE+V KILDT+P+A+ DLD  EKN +LLA+E+R+T 
Sbjct: 468 FEKKETQKFRKKETPILVAAKVGITEIVDKILDTYPLAIQDLDSDEKNAVLLAVEHRQTD 527

Query: 124 VYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKK 183
           VYNLLL R  + +++F Q+D  GNSALHLAAK GD+ P L PGAALQ+QWEIKW++ VK 
Sbjct: 528 VYNLLLKRAMVKESVFRQLDKHGNSALHLAAKLGDYRPKLVPGAALQMQWEIKWYKFVKN 587

Query: 184 LMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAA 243
            MP HFF ++N  G+TP E+F  +H++LV +G EWLTKTSESCSVVAAL++TVAFATSA 
Sbjct: 588 SMPPHFFVKHNSQGQTPKEIFIVTHKELVAKGSEWLTKTSESCSVVAALVATVAFATSAT 647

Query: 244 VPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPR 303
           +PGGV+  +G PILENEP F +FAI+SLVALC SVTA++ FLTILTSRYQENDFA DLPR
Sbjct: 648 IPGGVNPENGAPILENEPAFEVFAIASLVALCFSVTAVIFFLTILTSRYQENDFAMDLPR 707

Query: 304 KLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFD 363
           KL LGLT+LFTSI +IL+SFC+GH F+L   LR+AAYP+YAATCLP++FFAL+QLPLYFD
Sbjct: 708 KLFLGLTSLFTSIASILLSFCAGHFFVLKESLRTAAYPLYAATCLPISFFALSQLPLYFD 767

Query: 364 LMLAILKTVPQRSYK 378
           L  AIL   PQRSYK
Sbjct: 768 LGRAILLDEPQRSYK 782

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066419|ref|XP_002302098.1| predicted protein [Populus trichocarpa] gi|222843824|gb|EEE81371.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/321 (63%), Positives = 257/321 (80%), Gaps = 2/321 (0%)

Query: 63  TYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRT 122
           T KK  A     +ETPIL+AAK G+ EMV+KI++ FPVA+ D++  +KNI+LL++ENR+ 
Sbjct: 40  TTKKPKAPAMEMRETPILIAAKNGIVEMVEKIIEKFPVAINDVNAEKKNIVLLSVENRQP 99

Query: 123 SVYNLLLS--RKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQH 180
            VY  LLS  R  + ++IF QVD++GNSALHLAA  GD  P   PGAALQ+QWEIKWF+ 
Sbjct: 100 HVYQFLLSLKRNIVKESIFRQVDSKGNSALHLAATLGDFKPWSIPGAALQMQWEIKWFEF 159

Query: 181 VKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFAT 240
           VK  MP +FF RYN +GKTP ++FTE+H+DLVK G EWLT TSESCSVVAALI+TVAFAT
Sbjct: 160 VKDSMPPNFFVRYNKEGKTPRDIFTETHKDLVKSGGEWLTNTSESCSVVAALIATVAFAT 219

Query: 241 SAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKD 300
           S+ VPGGV++ +G PILE +P F +FAISSL+ALC SVT++V+FL ILTSRYQE DF +D
Sbjct: 220 SSTVPGGVNEITGSPILEYQPAFKMFAISSLIALCFSVTSVVMFLAILTSRYQERDFGQD 279

Query: 301 LPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPL 360
           LPRKLL+GLT+LF SI ++LVSFC+GH F+L +EL+ AA+P+YA TCLPVTFFA+AQ PL
Sbjct: 280 LPRKLLVGLTSLFISIASVLVSFCTGHFFVLRDELKYAAFPVYAVTCLPVTFFAVAQFPL 339

Query: 361 YFDLMLAILKTVPQRSYKVIS 381
           YFDL  A  K VPQRSY V++
Sbjct: 340 YFDLTWATFKKVPQRSYMVVA 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495447|ref|XP_002274376.2| PREDICTED: uncharacterized protein LOC100254555 [Vitis vinifera]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/442 (51%), Positives = 286/442 (64%), Gaps = 65/442 (14%)

Query: 2   IKNLREKKETYTWAIQVLNELVDH----------RNPDQ---------YKYVYNG---QD 39
           IK +  KK+ +TW+IQ++ EL+ H           +P Q         + Y  NG     
Sbjct: 289 IKRIIHKKQKHTWSIQIMKELLQHTEEYKYYDTGSSPHQSPFLDEVETFLYAPNGVRMPS 348

Query: 40  PRISTFGQD----VNAFTARETPLD-------------PSTY----------KKKNA--- 69
           P  ST  +D      A T   +P D             PS            KK+NA   
Sbjct: 349 PHQSTLEEDKTTPYTAPTGSSSPKDGRMDEIKTALKNTPSKSPMEANQGLENKKENAPVL 408

Query: 70  -------------RRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLA 116
                         +  +KETPIL+AAK G+ EMV++ILD FPVA+ D++   KN++LLA
Sbjct: 409 NPVILAGKKTKKTEKVDKKETPILLAAKNGIAEMVREILDRFPVAIQDMNSEHKNMVLLA 468

Query: 117 IENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIK 176
           +ENR+  VY LLL+RK    T+F  VD  GNSALHLAA   D+LP   PGAALQ+QWEIK
Sbjct: 469 VENRQPHVYELLLNRKIQKDTVFRIVDKDGNSALHLAAMLRDNLPWHIPGAALQMQWEIK 528

Query: 177 WFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTV 236
           WF +VK  MP HFF  YN + +TP EVF ESH++LV++G +WL  TS+SCSVV+ALI+TV
Sbjct: 529 WFDYVKNSMPIHFFPHYNANNQTPKEVFNESHKELVEKGGKWLKATSDSCSVVSALIATV 588

Query: 237 AFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQEND 296
           AFATSA VPGG+ + SGKPILE +P F IFAISSLVALC SVT++V+FL ILTSRYQ  D
Sbjct: 589 AFATSATVPGGIKEDSGKPILERQPAFRIFAISSLVALCFSVTSVVMFLAILTSRYQVKD 648

Query: 297 FAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALA 356
           F +DLPRKLLLGL++LF SI AILVSFC+GH F+L +EL+ AA+P+YA TCLPVTFFA+A
Sbjct: 649 FRRDLPRKLLLGLSSLFVSIAAILVSFCAGHFFVLKDELKYAAFPVYAVTCLPVTFFAIA 708

Query: 357 QLPLYFDLMLAILKTVPQRSYK 378
           Q PLY DL+ A  K VP+R  +
Sbjct: 709 QFPLYLDLVWATFKKVPKRGSR 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447499|ref|XP_003594025.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|355483073|gb|AES64276.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/379 (56%), Positives = 275/379 (72%), Gaps = 12/379 (3%)

Query: 2   IKNLREKKETYTWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQ-DVNAFTARETPLD 60
           ++ ++ KKE +  A QV+NEL+ H     YKY + G  PR+   G  D++   +      
Sbjct: 323 VEKIQRKKEKHIRAKQVMNELIQH--ASLYKYDFTGPSPRVEELGGGDIDKIKSN----- 375

Query: 61  PSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENR 120
                +      RR  +PIL+AAKMGVTEM++ ILD +PVA+ D+D   KN++LLAIENR
Sbjct: 376 ----TENEVIEKRRMVSPILIAAKMGVTEMIENILDMYPVAIHDVDSQNKNVVLLAIENR 431

Query: 121 RTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQH 180
           +  VY+LL  R  + +T F QVD  GNSALHLAA Y    P   PGAA+Q+QWE KW++ 
Sbjct: 432 QPHVYSLLNKRSVIKETAFRQVDINGNSALHLAATYRRFKPWRVPGAAMQMQWEYKWYKL 491

Query: 181 VKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFAT 240
           VK  MP +F+ RYN DGKT  +VF ++H  L K+G +WLTKT+ESCSVVAAL++TVAF T
Sbjct: 492 VKNSMPPNFYERYNKDGKTAKQVFIDTHAPLTKEGSKWLTKTAESCSVVAALVATVAFTT 551

Query: 241 SAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKD 300
           S A+PGG DQ SG P+L  +P F ++A++SLVALCSSVTALVLFL+ILTSR++E DF  D
Sbjct: 552 STAIPGGPDQESGMPLLLEKPAFKLYAVASLVALCSSVTALVLFLSILTSRFEEKDFVID 611

Query: 301 LPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPL 360
           LPRKLL+GLTTLFTSI ++LVSFC+GH FI+  ++R A YPIYAATCLPV+FFAL QLPL
Sbjct: 612 LPRKLLVGLTTLFTSIASVLVSFCAGHFFIVEAQMRFAVYPIYAATCLPVSFFALVQLPL 671

Query: 361 YFDLMLAILKTVPQRSYKV 379
           YFDL LA+ + VPQRSYKV
Sbjct: 672 YFDLSLAMCRKVPQRSYKV 690

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479721|ref|XP_002272096.2| PREDICTED: uncharacterized protein LOC100255529 [Vitis vinifera]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/433 (50%), Positives = 283/433 (65%), Gaps = 56/433 (12%)

Query: 1   GIKNLREKKETYTWAIQVLNELVDHRNPDQYKYVYNGQDPR------------------- 41
            +K +R+KKE + WA Q+L+EL+ H +   Y+Y  NG++P+                   
Sbjct: 316 AVKKVRQKKEKHVWAAQILDELLCHASF--YEYEDNGRNPQQPSQKKDADTTPYSISDDH 373

Query: 42  ------------------------ISTFGQDVNAFTARETP-----LDPSTYKKKNARRS 72
                                    +  G+D  A   R +P      + +   KKN +  
Sbjct: 374 GVSFDNTLESQHLPGGTAAQPSSATNQQGEDKGAPADRSSPEAQRKQNDNGKNKKNEQDK 433

Query: 73  R------RKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYN 126
           +      RKETP+LVAAK GV E+V++IL+ FPVA+ D D  +KNI+LLA+E R+  VY 
Sbjct: 434 KKPSEMERKETPLLVAAKNGVVEIVERILELFPVAIHDKDYQKKNIVLLAVEYRQPHVYE 493

Query: 127 LLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMP 186
           LL+ RK L   +F  VD  GNSALHLAA  G++ P L PGAALQ+QWEIKW++ VK+ +P
Sbjct: 494 LLVKRKVLKDAVFRHVDIDGNSALHLAAMLGENKPWLIPGAALQMQWEIKWYEFVKRSVP 553

Query: 187 RHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPG 246
           +HFF R N  G+T  ++FTE H DLV+ G EWL KTSESCSVVAALI+TVAFATS+ VPG
Sbjct: 554 QHFFVRCNQKGETAKDIFTEKHMDLVQAGGEWLFKTSESCSVVAALIATVAFATSSTVPG 613

Query: 247 GVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLL 306
           GV +  G P LE+EP F+IFAISSLVALC SV A+++FL ILTSRYQE DF   LPRKLL
Sbjct: 614 GVKEKVGTPTLEDEPAFDIFAISSLVALCFSVNAVIMFLAILTSRYQERDFRIYLPRKLL 673

Query: 307 LGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLML 366
           +GLT+LF SI ++L+SFC+GH F+L ++L+  A  +YA TCLPV FFA+AQ PLYFDLM 
Sbjct: 674 VGLTSLFVSIASMLISFCAGHYFVLMDKLQYTAILVYAVTCLPVIFFAVAQFPLYFDLMW 733

Query: 367 AILKTVPQRSYKV 379
           A  K VPQRSYKV
Sbjct: 734 ATFKKVPQRSYKV 746

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479729|ref|XP_002274084.2| PREDICTED: uncharacterized protein LOC100245924 [Vitis vinifera]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/413 (49%), Positives = 273/413 (66%), Gaps = 34/413 (8%)

Query: 2   IKNLREKKETYTWAIQVLNELVDHRNPDQYKYVYNGQDPRIS--TFGQDVNAFTARETPL 59
           ++ +R  KE + W+ Q++ EL+   +P +Y Y   G  P +   T  +D+ A    E   
Sbjct: 415 VQKIRVMKEKHIWSAQIMKELLHCASPYEYDYSA-GSQPELQNKTNKEDLTAALIEENEQ 473

Query: 60  DPSTYKKKNARR-------------------------------SRRKETPILVAAKMGVT 88
                +K + +R                                 +KETPIL+AAK G+T
Sbjct: 474 KGQKDQKMDGKRLTFNMKDKGYVFDVDFSKGEVTLGPVEGNKQKDKKETPILIAAKNGIT 533

Query: 89  EMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNS 148
           EMV +ILD  PVA+ D   A KNI+++A+ENR+ +VYNLLL ++ L +T+F  VD++GNS
Sbjct: 534 EMVMEILDCSPVAIHDKTSANKNIVMVAVENRQPNVYNLLLEKRILIETLFNAVDDEGNS 593

Query: 149 ALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH 208
           ALHL A    H P L PGAALQ+QWEIKW+++V+  MP HF  RYN   KT  ++FTE H
Sbjct: 594 ALHLVAMATHHQPWLIPGAALQMQWEIKWYKYVEDSMPMHFSMRYNKANKTARQIFTEKH 653

Query: 209 RDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAI 268
            +LVK G  WL  TS SCSVVAALI+TVAFATSA VPGG+++G+G P LE +P FN+F+I
Sbjct: 654 EELVKNGSAWLNTTSNSCSVVAALIATVAFATSATVPGGINEGNGTPTLERKPAFNVFSI 713

Query: 269 SSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHS 328
           SSL+ALC SV +LV+FL ILTSR+QE DF ++LP K+L GL++LF SI A+LVSFC+GH 
Sbjct: 714 SSLIALCFSVNSLVMFLAILTSRHQERDFGRNLPNKMLFGLSSLFISIGAMLVSFCAGHF 773

Query: 329 FILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKTVPQRSYKVIS 381
           F+L +EL+ AA+PIYA TCLPV FFA+ QLPLY DLM A  + VP+RS   +S
Sbjct: 774 FLLKDELKYAAFPIYAVTCLPVAFFAVMQLPLYLDLMWATFRKVPKRSSTAVS 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546480|ref|XP_003541654.1| PREDICTED: uncharacterized protein LOC100778153 [Glycine max]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/381 (55%), Positives = 277/381 (72%), Gaps = 13/381 (3%)

Query: 2   IKNLREKKETYTWAIQVLNELVDHR-NPDQYKYVYNGQDPRISTFGQDVNAFTARETPLD 60
           I  ++ KK  +  A QV+NEL+    +   YK+ + G             +        +
Sbjct: 278 IGKIQRKKVKHILAKQVMNELIQRTCSSSLYKHDHTG------------TSNINSSPSSN 325

Query: 61  PSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENR 120
             + +K   ++ RR ++PIL+AAKMGV EMV+KIL+T PVA+ D+D   KN++LLAIENR
Sbjct: 326 NQSKEKGCYQKIRRTDSPILIAAKMGVAEMVEKILETDPVAIHDVDADNKNVVLLAIENR 385

Query: 121 RTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQH 180
           +  VY+LL  R  + +T F QVDNQGNSALHLAA Y  + P   PGAA+Q+QWE KW++ 
Sbjct: 386 QPHVYSLLNERSMIKETAFRQVDNQGNSALHLAATYRSYKPWRIPGAAMQMQWEYKWYKL 445

Query: 181 VKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFAT 240
           VK  MP +F+ RYN++G+T  +VF  +H  L K+G +WL+KTSESCS+VAAL++TVAF T
Sbjct: 446 VKNSMPPNFYERYNENGQTAKQVFISTHERLAKEGGKWLSKTSESCSLVAALVATVAFTT 505

Query: 241 SAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKD 300
           S AVPGG +Q +G P+ +    FNIFA++SLVALCSSVTALVLFL+ILTSR+QE DFA D
Sbjct: 506 STAVPGGPNQNTGYPLFQGRLAFNIFAVASLVALCSSVTALVLFLSILTSRFQEKDFAMD 565

Query: 301 LPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPL 360
           LPRKLLLGLTTLFTSI ++LVSFC+GH FI+ +EL+ A YPIYAATCLPV+ FA  QLPL
Sbjct: 566 LPRKLLLGLTTLFTSIASVLVSFCAGHFFIVEDELKFAVYPIYAATCLPVSLFAFVQLPL 625

Query: 361 YFDLMLAILKTVPQRSYKVIS 381
           YFDL LA+++ VPQRSYKV+S
Sbjct: 626 YFDLSLAMIRKVPQRSYKVLS 646

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546544|ref|XP_003541685.1| PREDICTED: uncharacterized protein LOC100798360 [Glycine max]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/427 (50%), Positives = 283/427 (66%), Gaps = 52/427 (12%)

Query: 2   IKNLREKKETYTWAIQVLNELVDHRNPDQYKYVYNGQDP--------------------- 40
           I  +R KKE + W+ Q+++EL+  +    Y+Y  +G  P                     
Sbjct: 297 INKIRRKKEKHVWSAQIMDELL--KRASMYEYDDDGNKPLQNLGDKDQQTDPYSFDGGGS 354

Query: 41  -RISTFGQDVNAFTAR-------------ETPLDPS--------TYKK--KNARRSRRK- 75
             ++   ++    T +             E PL  S        T KK  KN + S ++ 
Sbjct: 355 VTLADITEEQQHLTIKGEPKHQKIGGKKDENPLGSSLNLYCCHCTSKKDEKNEKISTKEK 414

Query: 76  ---ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRK 132
              ETPIL+AAK GVTEMV KI+D+FPVA+ D+D  +KNI+LLA+ENR+T +YN LLS+K
Sbjct: 415 KVLETPILIAAKNGVTEMVAKIMDSFPVAVHDMDAKKKNIVLLAVENRQTYLYNFLLSKK 474

Query: 133 ALGQT-IFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFT 191
            L ++ IF +VDN+GNSALHLAAK GD+ P L PG ALQ+ WEIKW+  VK  M  HFF+
Sbjct: 475 NLKESNIFEKVDNEGNSALHLAAKLGDYKPWLIPGEALQMHWEIKWYLFVKGSMQPHFFS 534

Query: 192 RYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQG 251
            YN++ KTP ++F+E+H+DLV+ G EWL KT+ESCS+VAALI+ VAF+TS  VPG     
Sbjct: 535 HYNNENKTPRDIFSETHKDLVRSGGEWLKKTAESCSLVAALIAAVAFSTSTNVPGDFKDD 594

Query: 252 SGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTT 311
           +G P LE  P F  FAI+SL+ALC SVT+LVLFL+ILTSRYQE DF K+LPRKL+LGLT+
Sbjct: 595 TGSPTLEERPEFKAFAIASLIALCCSVTSLVLFLSILTSRYQERDFGKNLPRKLILGLTS 654

Query: 312 LFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKT 371
           LF SI +++V FC+GH F+L ++L+S A+P+YA TCLPVT FALAQ PLY DL  A  K 
Sbjct: 655 LFMSITSMMVCFCAGHFFVLKDKLKSVAFPVYAVTCLPVTLFALAQFPLYIDLTWATFKK 714

Query: 372 VPQRSYK 378
           VPQR YK
Sbjct: 715 VPQRGYK 721

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546478|ref|XP_003541653.1| PREDICTED: uncharacterized protein LOC100777612 [Glycine max]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/378 (56%), Positives = 275/378 (72%), Gaps = 13/378 (3%)

Query: 2   IKNLREKKETYTWAIQVLNELVDHR-NPDQYKYVYNGQDPRISTFGQDVNAFTARETPLD 60
           I  ++ KK  +  A QV+NEL+    +   YK+ + G             +     T  +
Sbjct: 278 IGKIQRKKVKHILAKQVMNELIQRTCSSSLYKHDHTG------------TSNINSSTSSN 325

Query: 61  PSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENR 120
             + +K   ++ RR ++PIL+AAKMGV EMV+KIL+T PVA+ D+D   KN++LLAIENR
Sbjct: 326 NQSKEKGGFQKIRRTDSPILIAAKMGVAEMVEKILETDPVAIHDVDADNKNVVLLAIENR 385

Query: 121 RTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQH 180
           +  VY+LL  R  + +T F QVDNQGNSALHLAA Y  + P   PGAALQ+QWE KW++ 
Sbjct: 386 QPHVYSLLNERSMIKETAFRQVDNQGNSALHLAATYRSYKPWRVPGAALQMQWEYKWYKL 445

Query: 181 VKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFAT 240
           VK  MP +F+ RYN++G+T  +VF  +H  L K+G +WL+KTSESCS+VAAL++TVAF T
Sbjct: 446 VKNSMPPNFYERYNENGQTAKQVFISTHERLTKEGGKWLSKTSESCSLVAALVATVAFTT 505

Query: 241 SAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKD 300
           S AVPGG +Q +G P+ +    FNIFA++SLVALCSSVTALVLFL+ILTSR+QE DFA D
Sbjct: 506 STAVPGGPNQNTGYPLFQGRLAFNIFAVASLVALCSSVTALVLFLSILTSRFQEKDFAMD 565

Query: 301 LPRKLLLGLTTLFTSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPL 360
           LPRKLLLGLTTLFTSI ++LVSFC+GH FI+ +EL+ A YPIY ATCLPV+FFA  QLPL
Sbjct: 566 LPRKLLLGLTTLFTSIASVLVSFCAGHFFIVEDELKFAVYPIYVATCLPVSFFAFVQLPL 625

Query: 361 YFDLMLAILKTVPQRSYK 378
           YFDL LA+++ VPQRSYK
Sbjct: 626 YFDLSLAMIRKVPQRSYK 643

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.806	0.460	0.330	1e-40
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.761	0.482	0.334	8.7e-40
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.795	0.486	0.311	1.3e-37
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.751	0.5	0.311	2.3e-36
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.753	0.829	0.317	3.5e-36
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.188	0.124	0.333	2.9e-08
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.235	0.149	0.312	3.5e-08
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.552	0.357	0.282	5.1e-07
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.206	0.130	0.35	1.4e-06
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.217	0.172	0.333	2e-06

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
 Identities = 103/312 (33%), Positives = 160/312 (51%)

Query:    71 RSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL-LLAIENRRTSVYNLLL 129
             RS   +  +L A + G  + + +++      +W    +  + L LLA+E R+  V++LL 
Sbjct:   355 RSETVDEALLFAVRYGNVDFLVEMIRNNSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLY 414

Query:   130 SRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL-FPGAALQVQWEIKWFQHVKKLMPRH 188
                     +    D  GN  LHLA        L    GA LQ+Q E++WF+ V+++ P  
Sbjct:   415 GLDDRKYLLLADKDCDGNGVLHLAGFPSPPSKLSSVVGAPLQLQRELQWFKEVERIAPEI 474

Query:   189 FFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGV 248
                R N + +TP E+FT+ H+ L ++  +W+  T+ SCS+VAALI TV FA    VPGG 
Sbjct:   475 EKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGT 534

Query:   249 DQGS-GKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKXXX 307
             D  S GKP    +  F IF +S L++  +S T++++FL ILT+RY  +DF   LP K   
Sbjct:   535 DDNSKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIA 594

Query:   308 XXXXXXXSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLA 367
                    SI A+L++F S    ++  E +    P     CLP   F L Q PL  +++ +
Sbjct:   595 GLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIFS 654

Query:   368 IL-KTVPQRSYK 378
                K +  R+ K
Sbjct:   655 TYGKGIFDRNMK 666

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 100/299 (33%), Positives = 159/299 (53%)

Query:    73 RRKET---PILVAAKMGVTEMVKKILDTFPVAMWDLDPAE-KNILLLAIENRRTSVYNLL 128
             R KET    +L AAK G  +   +I+      +W L+P   +N+  LA+E ++  ++NL+
Sbjct:   289 RWKETVYEALLEAAKSGNRDFFIEIIKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLI 348

Query:   129 LSRKALGQTIFWQVDNQGNSALHLAAKYG--DHLPLLFPGAALQVQWEIKWFQHVKKLMP 186
                     T+    D   N+ LH+A +    D L  +  GAAL++Q E +WF+ V+ L+ 
Sbjct:   349 HGLDDRKVTLLRSYDKGNNNILHIAGRLSTPDQLSKI-SGAALKMQRESQWFKEVESLVS 407

Query:   187 RHFFTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPG 246
                  + N D KTP ++F   H  L K+G EW+  T+ +CS VAALI+TV F     VPG
Sbjct:   408 EREVVQKNKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPG 467

Query:   247 GVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKXX 306
             G+D  SG P++ N+  F  F  +  +A  +S  ++++FL+ILTSRY  +DF   LPRK  
Sbjct:   468 GIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMI 527

Query:   307 XXXXXXXXSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLM 365
                     SI ++LV+F +  S  + ++  +  YP+      P   F + Q PL  +++
Sbjct:   528 LGQSILFISIASMLVAFITSLSASMRHK-PALVYPLKPLASFPSLLFLMLQYPLLKEMI 585

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
 Identities = 97/311 (31%), Positives = 158/311 (50%)

Query:    71 RSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLS 130
             RS   +  +L A + G  + + +++      +W    +   +   A++ R+  V++LL  
Sbjct:   316 RSESVDEALLFAVRYGNVDFLVEMIKNNSELLWSTGTS--TLFNTAVQVRQEKVFSLLYG 373

Query:   131 RKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL-FPGAALQVQWEIKWFQHVKKLMPRHF 189
                         D+ GNS LHLA     +  L     A LQ+Q E++WF+ +++++P   
Sbjct:   374 LGDRKYLFLADKDSDGNSVLHLAGYPPPNYKLATVVSATLQMQRELQWFKEMERIVPAIE 433

Query:   190 FTRYNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVD 249
               R N +  TP E+F + H  +  +  +W+  T+ SCS+VAALI TV FA    VPGG D
Sbjct:   434 NERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTD 493

Query:   250 QGSG-KPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKXXXX 308
               SG +P   +E +F IF +S L++  ++ T++++FL ILT+RY  +DF   LP      
Sbjct:   494 DNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAG 553

Query:   309 XXXXXXSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAI 368
                   SI A+LV+F S   F + N+    A  I+ A C P   F + Q PL  +L+ + 
Sbjct:   554 LSTLFVSIAAMLVAFSSA-LFTIFNDPWIVAPTIFFA-CFPALLFVMIQYPLLKELIFST 611

Query:   369 L-KTVPQRSYK 378
               K +  R+ K
Sbjct:   612 YGKRIFDRNMK 622

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
 Identities = 93/299 (31%), Positives = 158/299 (52%)

Query:    82 AAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQ 141
             AA++G  E++  ++ +    +W +D   + +  +A   R  ++++L+     +   I   
Sbjct:   262 AAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELGGIKDLIASY 321

Query:   142 VDNQG-NSALHLAAKYGD-HLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKT 199
              + Q  ++ LHL A+    +   +  GAAL +Q E+ WF+ VK+++PR +    N  G+ 
Sbjct:   322 KEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTKGEL 381

Query:   200 PDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGK----- 254
               ++FTE H +L K+G  W+ +T+ +C + A LI+TV FA +  +PGG D    K     
Sbjct:   382 AHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANTLG 441

Query:   255 -PILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKXXXXXXXXX 313
              P      +F+IF +S  VAL SS+ ++V+FL+I TSRY E DF  DLP K         
Sbjct:   442 FPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSALF 501

Query:   314 XSIVAILVSFCSGHSFILTNELRSAAYPIYAATCLPVTFFALAQLPLYFDLMLAILKTV 372
              SI++++++F    S IL   +  A+  +   +CL  +  AL    LYF L    L++V
Sbjct:   502 ISIISMILAFT--FSMILIR-VEKASLSLVLISCL-ASLTALTFAYLYFHLWFNTLRSV 556

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 95/299 (31%), Positives = 163/299 (54%)

Query:    77 TPILV--AAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKAL 134
             +P+L+  AA+ G  E++  ++ ++P  +W +D   +++  +A  NR   ++N +    A+
Sbjct:    31 SPMLLFDAAQSGNLELLLILIRSYPDLIWTVDHKNQSLFHIAAINRHEKIFNRIYELGAI 90

Query:   135 GQTIFWQVDNQGN-SALHLAAKYGDHLPL-LFPGAALQVQWEIKWFQHVKKLMPRHFFTR 192
                I    + + N + LHL A+      L +  GAALQ+Q EI W++ VK+++PR +   
Sbjct:    91 KDLIAMYKEKESNDNLLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEIVPRVYIKT 150

Query:   193 YNDDGKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGS 252
              N   +   ++FT+ H +L K+G +W+ +T+ +C +V+ LI+TV FA +  +PGG D   
Sbjct:   151 KNKKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTSG 210

Query:   253 -----GKPILENEPVFNIFAISSLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKXXX 307
                  G P    E  F +F IS  VAL SSVT++++FL+ILTSRY E  F   LP K   
Sbjct:   211 DIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLML 270

Query:   308 XXXXXXXSIVAILVSFCSGHSFILTNELR-SAAYPIYAATCLPVTFFALAQLPLYFDLM 365
                    SI++++++F +    I   E + S    +Y A+   ++F  L    L+FD +
Sbjct:   271 GLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVL-HFQLWFDTL 328

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 25/75 (33%), Positives = 43/75 (57%)

Query:   217 EWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGS---GKPILENEPVFNIFAISSLVA 273
             E L     + ++VA LI++VA+A     PGGV Q     GK ++     F +FAI + +A
Sbjct:   399 EALQNARNTIAIVAVLIASVAYAGGINPPGGVYQDGPWRGKSLVGKTTAFKVFAICNNIA 458

Query:   274 LCSSVTALVLFLTIL 288
             L +S+  ++L ++I+
Sbjct:   459 LFTSLGIVILLVSII 473

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
 Identities = 30/96 (31%), Positives = 51/96 (53%)

Query:   208 HRDLVKQGR-EWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGS---GKPILENEPVF 263
             H+ L  +   E L     + ++VA LI++V++A     PGGV Q     GK ++ N   F
Sbjct:   389 HKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGGINPPGGVYQDGPWKGKSLVGNTAAF 448

Query:   264 NIFAISSLVALCSSVTALVLFLTILTSRYQENDFAK 299
              +FAI + +AL +S+  ++L ++I+   YQ     K
Sbjct:   449 KVFAICNNIALFTSLCIVILLVSIIP--YQRKPLKK 482

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 66/234 (28%), Positives = 106/234 (45%)

Query:    69 ARRSRRK-ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNL 127
             ARR  +K +T + +A K   +E+VK +LD  P  +   D +    L +A   +R  +  L
Sbjct:   259 ARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVEL 318

Query:   128 LLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKL-MP 186
             LLS   L  T    +     +AL +A    + LPL    + ++            +L  P
Sbjct:   319 LLS---LPDTNANTLTRDHKTALDIA----EGLPLSEESSYIKECLARSGALRANELNQP 371

Query:   187 RHFF----TRYNDD--------GKTPDEVFTESHRDLVKQGREWLTKTSESCSVVAALIS 234
             R       T+  +D         +T   V   S ++L K  RE +   + S +VVA L +
Sbjct:   372 RDELRSTVTQIKNDVHIQLEQTKRTNKNVHNIS-KELRKLHREGINNATNSVTVVAVLFA 430

Query:   235 TVAFATSAAVPGGVDQGSGKPILENEPVFNIFAISSLVALCSSVTALVLFLTIL 288
             TVAFA    VPGG D   G  ++     F IF I + +AL +S+  +V+ +T++
Sbjct:   431 TVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLV 483

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 28/80 (35%), Positives = 46/80 (57%)

Query:   209 RDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGKPILENEPVFNIFAI 268
             ++L K  R  +   + S +VVA L +TVAFA    VPGG D   G  ++ +   F IF I
Sbjct:   419 KELRKLHRAGINNATNSVTVVAVLFATVAFAAIFTVPGG-DDDHGVAVMVHATSFKIFFI 477

Query:   269 SSLVALCSSVTALVLFLTIL 288
              + +AL +S+  +V+ +T++
Sbjct:   478 FNAIALFTSLAVVVVQITLV 497

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 29/87 (33%), Positives = 47/87 (54%)

Query:   206 ESHRDLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGS----GKPILENEP 261
             ESH++      E L     + +VVA LI++V FA     PGG+ Q S    GK +     
Sbjct:   197 ESHKEESVMHSEALQNARNTITVVAILIASVTFAVGMNPPGGIYQESTSSKGKSVAAKTV 256

Query:   262 VFNIFAISSLVALCSSVTALVLFLTIL 288
              F IF +S+ +AL +S+  ++L ++I+
Sbjct:   257 AFKIFYVSNSIALFTSLWIVILLVSII 283

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023778001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence (Chromosome undetermined scaffold_928, whole genome shotgun sequence); (416 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
pfam13962	114	pfam13962, PGG, Domain of unknown function	8e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  102 bits (257), Expect = 8e-27
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 13/121 (10%)

Query: 216 REWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGS-----GKPILENEPV-FNIFAIS 269
            EWL KT  S  VVA LI+TV FA     PGG  Q       G PIL  +P  F  F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 270 SLVALCSSVTALVLFLTILTSRYQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSF 329
           + +A  +S+ A++L L I+        F++ LPR LL  LT L+ S+++++V+F +G   
Sbjct: 61  NTIAFVASLVAVILLLYIV------PSFSRRLPR-LLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 330 I 330
           +
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 71  RSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLS 130
           +     TP+ +AAK G  E+VK +L+         D      L LA  N    V  LLL 
Sbjct: 36  KDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTPLHLAARNGNLDVVKLLLK 94

Query: 131 RKALGQTIFWQVDNQGNSALHLAAKYGD 158
             A         D  G + LHLAAK G 
Sbjct: 95  HGADVNAR----DKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 11/92 (11%)

Query: 71  RSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKN---ILLLAIENRRTSVYNL 127
           R     TP+ +AA  G  E+VK +L+       D++  + +    L LA +N    +  L
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLE----NGADVNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 128 LLSRKALGQTIFWQVDNQGNSALHLAAKYGDH 159
           LL + A         D  GN+ LHLAA+ G+ 
Sbjct: 59  LLEKGADVN----ARDKDGNTPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 79  ILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKN-ILLLAIENRRTSVYNLLLSRKALGQT 137
           + +AAK G  E+VK +L+       D++  + +  L LA  N    +  LLL   A    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA----DVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 138 IFWQVDNQGNSALHLAAKYGD 158
                D  GN+ALHLAA+ G+
Sbjct: 57  ----KDKDGNTALHLAARNGN 73

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PF13962	113	PGG: Domain of unknown function	99.92
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.9
PHA02791	284	ankyrin-like protein; Provisional	99.9
PHA02791	284	ankyrin-like protein; Provisional	99.89
PHA02875	413	ankyrin repeat protein; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA02878	477	ankyrin repeat protein; Provisional	99.88
PHA02874	434	ankyrin repeat protein; Provisional	99.88
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.87
PHA02874	434	ankyrin repeat protein; Provisional	99.87
PHA03100	480	ankyrin repeat protein; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA02875	413	ankyrin repeat protein; Provisional	99.87
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.87
KOG0510	929	consensus Ankyrin repeat protein [General function	99.87
PHA02798	489	ankyrin-like protein; Provisional	99.85
PHA03095	471	ankyrin-like protein; Provisional	99.85
PHA03100	480	ankyrin repeat protein; Provisional	99.85
PHA02859	209	ankyrin repeat protein; Provisional	99.85
KOG0508	615	consensus Ankyrin repeat protein [General function	99.84
KOG0510	929	consensus Ankyrin repeat protein [General function	99.84
PHA02989	494	ankyrin repeat protein; Provisional	99.84
PHA03095	471	ankyrin-like protein; Provisional	99.84
PHA02795	437	ankyrin-like protein; Provisional	99.84
PHA02798	489	ankyrin-like protein; Provisional	99.84
PHA02946	446	ankyin-like protein; Provisional	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.82
PHA02989	494	ankyrin repeat protein; Provisional	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02876	682	ankyrin repeat protein; Provisional	99.82
PHA02876	682	ankyrin repeat protein; Provisional	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.81
PHA02741	169	hypothetical protein; Provisional	99.81
PHA02795	437	ankyrin-like protein; Provisional	99.8
KOG0508	615	consensus Ankyrin repeat protein [General function	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.78
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.76
PHA02917	661	ankyrin-like protein; Provisional	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.75
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.75
PHA02741	169	hypothetical protein; Provisional	99.74
PHA02743	166	Viral ankyrin protein; Provisional	99.74
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.74
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.74
PHA02730	672	ankyrin-like protein; Provisional	99.74
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.71
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.71
PHA02730	672	ankyrin-like protein; Provisional	99.7
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.7
PHA02792	631	ankyrin-like protein; Provisional	99.68
PHA02884	300	ankyrin repeat protein; Provisional	99.65
KOG0514	452	consensus Ankyrin repeat protein [General function	99.65
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.63
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.61
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
PHA02736	154	Viral ankyrin protein; Provisional	99.61
PHA02792	631	ankyrin-like protein; Provisional	99.58
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.57
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.56
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.53
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.53
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.52
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.34
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.33
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.27
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.25
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.22
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.21
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.17
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.14
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.09
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.08
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.0
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.79
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.62
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.58
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.56
PF13606	30	Ank_3: Ankyrin repeat	98.53
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.49
KOG0522	560	consensus Ankyrin repeat protein [General function	98.47
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.45
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.44
PF13606	30	Ank_3: Ankyrin repeat	98.42
KOG0522	560	consensus Ankyrin repeat protein [General function	98.41
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.41
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.41
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.25
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.21
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.05
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.04
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.03
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.96
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.91
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.69
KOG2384	223	consensus Major histocompatibility complex protein	97.63
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.46
KOG0511	516	consensus Ankyrin repeat protein [General function	97.31
KOG2384	223	consensus Major histocompatibility complex protein	96.83
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.65
KOG0511	516	consensus Ankyrin repeat protein [General function	96.51
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.33
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.24
KOG2505	591	consensus Ankyrin repeat protein [General function	95.52
KOG2505	591	consensus Ankyrin repeat protein [General function	93.12
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.53

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.8e-30  Score=215.53  Aligned_cols=166  Identities=20%  Similarity=0.198  Sum_probs=136.3

Q ss_pred             HHHHHHHcCCCCCCccccc-CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHh
Q 037143           17 QVLNELVDHRNPDQYKYVY-NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL   95 (382)
Q Consensus        17 eiv~~Ll~~~~~~~~~~~~-~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   95 (382)
                      .-++.|++.+|......++ +|+||||+|+  ..|+.+++++|++. ++. ..+..|+.||||||+||..|+.++|+.|+
T Consensus        17 ~kveel~~s~~kSL~~r~dqD~Rt~LHwa~--S~g~~eiv~fLlsq-~nv-~~ddkDdaGWtPlhia~s~g~~evVk~Ll   92 (226)
T KOG4412|consen   17 FKVEELIQSDPKSLNARDDQDGRTPLHWAC--SFGHVEIVYFLLSQ-PNV-KPDDKDDAGWTPLHIAASNGNDEVVKELL   92 (226)
T ss_pred             HHHHHHHhcChhhhhccccccCCceeeeee--ecCchhHHHHHHhc-CCC-CCCCccccCCchhhhhhhcCcHHHHHHHh
Confidence            4567788887744444444 7999999999  67999999999973 332 23556889999999999999999999999


Q ss_pred             hh-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHH
Q 037143           96 DT-FPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWE  174 (382)
Q Consensus        96 ~~-~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~  174 (382)
                      .+ +++ ++..++.|+||||+|+.+|+.+|+++|++.|    +.++.+|..|.||||-|+..|..+++.+          
T Consensus        93 ~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~g----a~i~~kD~~~qtplHRAAavGklkvie~----------  157 (226)
T KOG4412|consen   93 NRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKG----ALIRIKDKQGQTPLHRAAAVGKLKVIEY----------  157 (226)
T ss_pred             cCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcC----CCCcccccccCchhHHHHhccchhhHHH----------
Confidence            99 566 7889999999999999999999999999999    8999999999999999999999776432          


Q ss_pred             HHHHHHHHhhccccccccccCCCCCccccc-hhhhH
Q 037143          175 IKWFQHVKKLMPRHFFTRYNDDGKTPDEVF-TESHR  209 (382)
Q Consensus       175 ~~~~~~v~~~~~~~~~~~~N~~G~Tpldla-~~~~~  209 (382)
                           .+..   ...+|..|+.|.|||+.+ .+.|.
T Consensus       158 -----Li~~---~a~~n~qDk~G~TpL~~al~e~~~  185 (226)
T KOG4412|consen  158 -----LISQ---GAPLNTQDKYGFTPLHHALAEGHP  185 (226)
T ss_pred             -----HHhc---CCCCCcccccCccHHHHHHhccCc
Confidence                 1111   123579999999999998 45443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.6e-29  Score=209.92  Aligned_cols=167  Identities=16%  Similarity=0.096  Sum_probs=138.3

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCC-CchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDP-STYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ..|++.+|+....-...+.|+.||||||+|+  ..|+-++|+.|+.. +++.   |..+..|+||||+|+.+|..+++++
T Consensus        50 ~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~--s~g~~evVk~Ll~r~~adv---na~tn~G~T~LHyAagK~r~eIaql  124 (226)
T KOG4412|consen   50 HVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA--SNGNDEVVKELLNRSGADV---NATTNGGQTCLHYAAGKGRLEIAQL  124 (226)
T ss_pred             chhHHHHHHhcCCCCCCCccccCCchhhhhh--hcCcHHHHHHHhcCCCCCc---ceecCCCcceehhhhcCChhhHHHH
Confidence            4689999996422333345667999999999  67899999999988 7766   8888899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHH
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQW  173 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~  173 (382)
                      |++.++. +..+|..|.||||-|+.-|+.+++++|+..+    +.+|.+|++|+||||.|...|+.++..+         
T Consensus       125 Lle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~----a~~n~qDk~G~TpL~~al~e~~~d~a~l---------  190 (226)
T KOG4412|consen  125 LLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQG----APLNTQDKYGFTPLHHALAEGHPDVAVL---------  190 (226)
T ss_pred             HHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcC----CCCCcccccCccHHHHHHhccCchHHHH---------
Confidence            9999865 8899999999999999999999999999999    7999999999999999977777654211         


Q ss_pred             HHHHHHHHHhhccccccccccCCCCCccccchhhhHH
Q 037143          174 EIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRD  210 (382)
Q Consensus       174 ~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~~~  210 (382)
                            .+..   ..++...|++| ||+.++...-.+
T Consensus       191 ------LV~~---gAd~~~edke~-t~~~~a~~~l~~  217 (226)
T KOG4412|consen  191 ------LVRA---GADTDREDKEG-TALRIACNELLE  217 (226)
T ss_pred             ------HHHh---ccceeeccccC-chHHHHHHHHHH
Confidence                  2222   23466889999 999888766443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=4e-26  Score=222.28  Aligned_cols=190  Identities=23%  Similarity=0.135  Sum_probs=140.6

Q ss_pred             HHHHhHHHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhcc-CCCCcHHHHHHHcC
Q 037143            8 KKETYTWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRS-RRKETPILVAAKMG   86 (382)
Q Consensus         8 ~k~~~~~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~g~tpLh~Aa~~g   86 (382)
                      .+......+|.|+.|++.......+.|++|-|+||+||  .+|+.+++++|++++++.   |+.+ .-|.||||+||++|
T Consensus        49 v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAA--iNNrl~v~r~li~~gadv---n~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   49 VKATQYGELETVKELVESEGESVNNPDREGVTLLHWAA--INNRLDVARYLISHGADV---NAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHH--HcCcHHHHHHHHHcCCCc---cccCCCCCCCcchHHHHcC
Confidence            34556677888888988764555556777999999999  789999999999998876   5554 56889999999999


Q ss_pred             cHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc---
Q 037143           87 VTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL---  163 (382)
Q Consensus        87 ~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~---  163 (382)
                      +..+|+.|++++++ +..+|.+|.||||+|++.|+.-.|-+|+..+    +++|.+|++|+||||+|+.+|+...+.   
T Consensus       124 ~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~----~d~d~~D~~grTpLmwAaykg~~~~v~~LL  198 (600)
T KOG0509|consen  124 HISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKG----ADIDLRDNNGRTPLMWAAYKGFALFVRRLL  198 (600)
T ss_pred             cHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhc----ccCCCcCCCCCCHHHHHHHhcccHHHHHHH
Confidence            99999999999888 7788999999999999999999999999988    789999999999999999988755221   


Q ss_pred             cCcchhhhHH------HHHHHH------HHHhhc-cccccccccCCCCCccccchhh
Q 037143          164 FPGAALQVQW------EIKWFQ------HVKKLM-PRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       164 ~~~~~l~~~~------~~~~~~------~v~~~~-~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      .-|+.+...+      -+.|.-      .+.... ...+.+..|.+|+||+++|.++
T Consensus       199 ~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  199 KFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            1122221111      112210      011011 1234567888899999999776

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=4e-25  Score=177.82  Aligned_cols=109  Identities=37%  Similarity=0.665  Sum_probs=95.4

Q ss_pred             hhHhhhhhhhhHHHHHHHHHHhhhhhccCCCCcCCC---CCcccccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037143          216 REWLTKTSESCSVVAALISTVAFATSAAVPGGVDQG---SGKPILENEP-VFNIFAISSLVALCSSVTALVLFLTILTSR  291 (382)
Q Consensus       216 ~~~~~~~~~s~~vva~LIATvtfaa~~t~PGg~~~~---~G~~~l~~~~-~f~~F~~~nt~a~~~S~~~~~~~~~~~~~~  291 (382)
                      +||++++++++++||+|||||||+|+++||||++|+   .|+|++.+++ .|.+|+++|+++|++|+.+++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            479999999999999999999999999999999875   6999999887 999999999999999999998876422   


Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 037143          292 YQENDFAKDLPRKLLLGLTTLFTSIVAILVSFCSGHSFI  330 (382)
Q Consensus       292 ~~~~~~~~~l~~~l~~~~~~l~~s~~~m~~af~~~~~~v  330 (382)
                         .++.+..++.+..+..++++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               233444555677889999999999999999999875

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=2.7e-24  Score=209.63  Aligned_cols=135  Identities=20%  Similarity=0.190  Sum_probs=82.8

Q ss_pred             HHHHHHHHcCCCCCCccccc-C-CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYKYVY-N-GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~~~-~-G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ++++++|+++  +++.+.-. + |.||||+|+  .+|+..++++|+++|++.   +..|.+|.||||+||..|+.-.|-+
T Consensus        91 l~v~r~li~~--gadvn~~gG~l~stPLHWAa--r~G~~~vv~lLlqhGAdp---t~~D~~G~~~lHla~~~~~~~~vay  163 (600)
T KOG0509|consen   91 LDVARYLISH--GADVNAIGGVLGSTPLHWAA--RNGHISVVDLLLQHGADP---TLKDKQGLTPLHLAAQFGHTALVAY  163 (600)
T ss_pred             HHHHHHHHHc--CCCccccCCCCCCCcchHHH--HcCcHHHHHHHHHcCCCC---ceecCCCCcHHHHHHHhCchHHHHH
Confidence            4566666666  44444322 2 666666666  566666666666666655   5556666666666666666666666


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcccccccccc-CCCCCHHHHHHhhCCCCcc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVD-NQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpLH~A~~~g~~~~~  162 (382)
                      ||.++.+ ++.+|.+|+||||+|+.+|....++.|++.+    +.++..| ++|+||||+|+..|+...+
T Consensus       164 ll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~----a~~~~~d~~~g~TpLHwa~~~gN~~~v  228 (600)
T KOG0509|consen  164 LLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFG----ASLLLTDDNHGNTPLHWAVVGGNLTAV  228 (600)
T ss_pred             HHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhc----ccccccccccCCchHHHHHhcCCcceE
Confidence            6666544 5566666666666666666655566666665    4555555 5666666666666665544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=8.6e-24  Score=189.25  Aligned_cols=164  Identities=15%  Similarity=0.081  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhcc-CCCCcHHHHHHHc---CcHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRS-RRKETPILVAAKM---GVTE   89 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~g~tpLh~Aa~~---g~~~   89 (382)
                      ...++|+.|++.  .  ...++.|.||||+|+....++.+++++|++.|++.   +.++ ..|.||||+|+..   ++.+
T Consensus        32 ~~~~~vk~Li~~--~--n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv---n~~~~~~g~TpLh~a~~~~~~~~~e  104 (209)
T PHA02859         32 DDIEGVKKWIKF--V--NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV---NFKTRDNNLSALHHYLSFNKNVEPE  104 (209)
T ss_pred             CcHHHHHHHHHh--h--hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC---CccCCCCCCCHHHHHHHhCccccHH
Confidence            446788888875  2  23566799999999853345899999999999876   6665 4799999998864   5799


Q ss_pred             HHHHHhhhCCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHhCCCccccccccccCCCCCHHHHH-HhhCCCCccccCc
Q 037143           90 MVKKILDTFPVAMWDLDPAEKNILLLAIE--NRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLA-AKYGDHLPLLFPG  166 (382)
Q Consensus        90 ~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A-~~~g~~~~~~~~~  166 (382)
                      +++.|++++++ ++.+|.+|+||||+|+.  .++.+++++|++.|    ++++.+|.+|+||||.+ +..++.+++++  
T Consensus       105 iv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g----adin~~d~~g~t~Lh~~a~~~~~~~iv~~--  177 (209)
T PHA02859        105 ILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG----VSFLNKDFDNNNILYSYILFHSDKKIFDF--  177 (209)
T ss_pred             HHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC----CCcccccCCCCcHHHHHHHhcCCHHHHHH--
Confidence            99999999887 78899999999999986  46899999999999    79999999999999975 45556444321  


Q ss_pred             chhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          167 AALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       167 ~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                                   .++   .+.+++.+|+.|+||+++|..+
T Consensus       178 -------------Ll~---~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        178 -------------LTS---LGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             -------------HHH---cCCCCCCCCCCCCCHHHHHhhh
Confidence                         122   2234679999999999998765

>PHA02791 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.2e-23  Score=195.68  Aligned_cols=133  Identities=14%  Similarity=0.093  Sum_probs=89.8

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      ..++++.|+++  +++.+.. +|+||||+|+  ..++.+++++|++.|++.   +.+|..|+||||+||..|+.++++.|
T Consensus        42 ~~eiv~~Ll~~--ga~~n~~-d~~TpLh~Aa--~~g~~eiV~lLL~~Gadv---n~~d~~G~TpLh~Aa~~g~~eivk~L  113 (284)
T PHA02791         42 NVRLVCTLLNA--GALKNLL-ENEFPLHQAA--TLEDTKIVKILLFSGMDD---SQFDDKGNTALYYAVDSGNMQTVKLF  113 (284)
T ss_pred             CHHHHHHHHHC--cCCCcCC-CCCCHHHHHH--HCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            35677777777  4444332 3677777777  567777777777777655   55667777777777777777777777


Q ss_pred             hhhCCCCccccCCCC-CcHHHHHHHcCCHHHHHHHHhCCCcccccccccc-CCCCCHHHHHHhhCCCCcc
Q 037143           95 LDTFPVAMWDLDPAE-KNILLLAIENRRTSVYNLLLSRKALGQTIFWQVD-NQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        95 l~~~~~~~~~~d~~G-~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpLH~A~~~g~~~~~  162 (382)
                      ++.+++ ++.++..| .||||+|+..|+.+++++|++++.    +  ..| ..|+||||+|+..|+.+++
T Consensus       114 l~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~----~--~~d~~~g~TpLh~Aa~~g~~eiv  176 (284)
T PHA02791        114 VKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP----S--TFDLAILLSCIHITIKNGHVDMM  176 (284)
T ss_pred             HHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCC----c--ccccccCccHHHHHHHcCCHHHH
Confidence            777766 45556666 377777777777777777777652    1  122 2467777777777776554

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.4e-23  Score=195.27  Aligned_cols=135  Identities=17%  Similarity=0.088  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      .+.+++++|+++  +.. ..|.+|+||||+|+  ..++.+++++|++.+++.   +..  +|+||||+|+..|+.++++.
T Consensus        10 ~~~~~~~~Lis~--~a~-~~D~~G~TpLh~Aa--~~g~~eiv~~Ll~~ga~~---n~~--d~~TpLh~Aa~~g~~eiV~l   79 (284)
T PHA02791         10 KSKQLKSFLSSK--DAF-KADVHGHSALYYAI--ADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKI   79 (284)
T ss_pred             CHHHHHHHHHhC--CCC-CCCCCCCcHHHHHH--HcCCHHHHHHHHHCcCCC---cCC--CCCCHHHHHHHCCCHHHHHH
Confidence            467899999998  543 45777999999999  779999999999998764   333  47999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCC-CHHHHHHhhCCCCccc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGN-SALHLAAKYGDHLPLL  163 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~-TpLH~A~~~g~~~~~~  163 (382)
                      |++.+++ ++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|..|. ||||+|+..|+.++++
T Consensus        80 LL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g----adin~~~~~g~~TpL~~Aa~~g~~eivk  145 (284)
T PHA02791         80 LLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKN----WRLMFYGKTGWKTSFYHAVMLNDVSIVS  145 (284)
T ss_pred             HHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCcCccCCCCCcHHHHHHHHcCCHHHHH
Confidence            9998877 6778999999999999999999999999998    78999999885 8999999999977653

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.6e-23  Score=206.69  Aligned_cols=165  Identities=17%  Similarity=0.102  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHcCCCCCCccccc-CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVY-NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~-~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...+++++|+++  |.+.+..+ +|.||||+|+  ..++.+++++|++.|++.   +..+.+|.||||.|+..|+.++++
T Consensus        13 g~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~--~~~~~~~v~~Ll~~ga~~---~~~~~~~~t~L~~A~~~g~~~~v~   85 (413)
T PHA02875         13 GELDIARRLLDI--GINPNFEIYDGISPIKLAM--KFRDSEAIKLLMKHGAIP---DVKYPDIESELHDAVEEGDVKAVE   85 (413)
T ss_pred             CCHHHHHHHHHC--CCCCCccCCCCCCHHHHHH--HcCCHHHHHHHHhCCCCc---cccCCCcccHHHHHHHCCCHHHHH
Confidence            456899999998  77766544 5999999999  779999999999998765   555677899999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhH
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQ  172 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~  172 (382)
                      .|++.+++..+..+.+|+||||+|+..|+.+++++|++.|    ++++.+|.+|.||||+|+..|+.++++.        
T Consensus        86 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g----ad~~~~~~~g~tpLh~A~~~~~~~~v~~--------  153 (413)
T PHA02875         86 ELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG----ADPDIPNTDKFSPLHLAVMMGDIKGIEL--------  153 (413)
T ss_pred             HHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCC----CCCCCCCCCCCCHHHHHHHcCCHHHHHH--------
Confidence            9999887766666778999999999999999999999998    7889999999999999999988655431        


Q ss_pred             HHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          173 WEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       173 ~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                             .++   .+..++.+|..|.||+++|...
T Consensus       154 -------Ll~---~g~~~~~~d~~g~TpL~~A~~~  178 (413)
T PHA02875        154 -------LID---HKACLDIEDCCGCTPLIIAMAK  178 (413)
T ss_pred             -------HHh---cCCCCCCCCCCCCCHHHHHHHc
Confidence                   111   1223456777788888877654

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=4e-23  Score=204.97  Aligned_cols=181  Identities=15%  Similarity=0.147  Sum_probs=128.3

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC--cHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG--VTEMV   91 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~~v   91 (382)
                      ..++++.|+++  |++.+. |.+|+||||+|+  ..++.+++++|+++|++.   +.+|..|+||||+|+..+  +.+++
T Consensus        51 ~~~iv~~Ll~~--Gadvn~~d~~G~TpLh~Aa--~~g~~eiv~lLL~~GAdi---n~~d~~g~TpLh~A~~~~~~~~e~v  123 (446)
T PHA02946         51 DERFVEELLHR--GYSPNETDDDGNYPLHIAS--KINNNRIVAMLLTHGADP---NACDKQHKTPLYYLSGTDDEVIERI  123 (446)
T ss_pred             CHHHHHHHHHC--cCCCCccCCCCCCHHHHHH--HcCCHHHHHHHHHCcCCC---CCCCCCCCCHHHHHHHcCCchHHHH
Confidence            35789999998  666664 556999999999  779999999999999876   778889999999998866  47889


Q ss_pred             HHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCC--cccc---Cc
Q 037143           92 KKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHL--PLLF---PG  166 (382)
Q Consensus        92 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~--~~~~---~~  166 (382)
                      ++|++.+++.....|.+|+|||| |+..|+.+++++|++.|    ++++.+|..|+||||+|+..++..  +++.   .|
T Consensus       124 ~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g----ad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G  198 (446)
T PHA02946        124 NLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIG----FEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG  198 (446)
T ss_pred             HHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcc----ccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC
Confidence            99999888754456778888887 56667788888888777    677777777777777776655432  2110   11


Q ss_pred             c-----------hhhhHHHH--HHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          167 A-----------ALQVQWEI--KWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       167 ~-----------~l~~~~~~--~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +           +++.....  ...+.++...+..+++.+|++|.||+++|.+.
T Consensus       199 adin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        199 ISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             CCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            1           11111110  01112222334456788999999999988765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.88  E-value=7.2e-23  Score=205.76  Aligned_cols=160  Identities=14%  Similarity=0.064  Sum_probs=134.6

Q ss_pred             HHHHHHHHcCCCCCCccc-ccC-CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYKY-VYN-GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~-~~~-G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      .+++++|+++  |++.+. +.+ |+||||+|+  ..++.+++++|++.|++.   +..|..|.||||.|+..|+.++++.
T Consensus       147 ~~iv~~Ll~~--gadin~~~~~~g~tpLh~A~--~~~~~~iv~~Ll~~gad~---n~~d~~g~tpLh~A~~~~~~~iv~~  219 (477)
T PHA02878        147 AEITKLLLSY--GADINMKDRHKGNTALHYAT--ENKDQRLTELLLSYGANV---NIPDKTNNSPLHHAVKHYNKPIVHI  219 (477)
T ss_pred             HHHHHHHHHc--CCCCCccCCCCCCCHHHHHH--hCCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHhCCHHHHHH
Confidence            4699999999  666654 555 999999999  789999999999999876   7788899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHhCCCccccccccccC-CCCCHHHHHHhhCCCCccccCcchhhh
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIEN-RRTSVYNLLLSRKALGQTIFWQVDN-QGNSALHLAAKYGDHLPLLFPGAALQV  171 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~-g~~~iv~~Ll~~~~~~~~~~~~~D~-~G~TpLH~A~~~g~~~~~~~~~~~l~~  171 (382)
                      |++.+++ ++.+|..|+||||+|+.. ++.+++++|+++|    +++|.+|. .|+||||+|+  ++.+++++       
T Consensus       220 Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g----advn~~~~~~g~TpLh~A~--~~~~~v~~-------  285 (477)
T PHA02878        220 LLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHG----VDVNAKSYILGLTALHSSI--KSERKLKL-------  285 (477)
T ss_pred             HHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC----CCCCccCCCCCCCHHHHHc--cCHHHHHH-------
Confidence            9999887 788999999999999976 6899999999999    79999986 8999999993  33222211       


Q ss_pred             HHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          172 QWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       172 ~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                              .++   .+.+++.+|++|.||+++|...
T Consensus       286 --------Ll~---~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        286 --------LLE---YGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             --------HHH---CCCCCCCcCCCCCCHHHHHHHH
Confidence                    112   2345679999999999999764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.88  E-value=9.9e-23  Score=202.39  Aligned_cols=158  Identities=13%  Similarity=0.048  Sum_probs=126.7

Q ss_pred             HHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHh
Q 037143           17 QVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL   95 (382)
Q Consensus        17 eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   95 (382)
                      ++++.|+++  +.+.+. +..|.||||+|+  ..++.+++++|++.|++.   +.+|..|.||||+|+..|+.+++++|+
T Consensus       105 ~~i~~ll~~--g~d~n~~~~~g~T~Lh~A~--~~~~~~~v~~Ll~~gad~---n~~d~~g~tpLh~A~~~~~~~iv~~Ll  177 (434)
T PHA02874        105 DMIKTILDC--GIDVNIKDAELKTFLHYAI--KKGDLESIKMLFEYGADV---NIEDDNGCYPIHIAIKHNFFDIIKLLL  177 (434)
T ss_pred             HHHHHHHHC--cCCCCCCCCCCccHHHHHH--HCCCHHHHHHHHhCCCCC---CCcCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            344444444  444443 455999999999  789999999999999876   777889999999999999999999999


Q ss_pred             hhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHH
Q 037143           96 DTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEI  175 (382)
Q Consensus        96 ~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~  175 (382)
                      +.+++ .+..|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|.||||.|+..++..+.             
T Consensus       178 ~~g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g----~~i~~~~~~g~TpL~~A~~~~~~~i~-------------  239 (434)
T PHA02874        178 EKGAY-ANVKDNNGESPLHNAAEYGDYACIKLLIDHG----NHIMNKCKNGFTPLHNAIIHNRSAIE-------------  239 (434)
T ss_pred             HCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC----CCCcCCCCCCCCHHHHHHHCChHHHH-------------
Confidence            99877 6778999999999999999999999999998    68899999999999999987652110             


Q ss_pred             HHHHHHHhhccccccccccCCCCCccccchh
Q 037143          176 KWFQHVKKLMPRHFFTRYNDDGKTPDEVFTE  206 (382)
Q Consensus       176 ~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~  206 (382)
                          .+   .....++.+|.+|.||+++|..
T Consensus       240 ----~L---l~~~~in~~d~~G~TpLh~A~~  263 (434)
T PHA02874        240 ----LL---INNASINDQDIDGSTPLHHAIN  263 (434)
T ss_pred             ----HH---HcCCCCCCcCCCCCCHHHHHHh
Confidence                11   1122355677777777777765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.87  E-value=9.1e-23  Score=209.80  Aligned_cols=109  Identities=20%  Similarity=0.060  Sum_probs=50.2

Q ss_pred             cCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           85 MGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIE--NRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        85 ~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      .|+.++++.|++.+++ ++.+|.+|+||||+|+.  .++.+++++|++.|    +++|.+|..|+||||+|+.....  +
T Consensus       294 ~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G----ADIN~kD~~G~TPLH~A~~~lav--~  366 (764)
T PHA02716        294 NIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG----NDLNEPDNIGNTVLHTYLSMLSV--V  366 (764)
T ss_pred             cCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC----CCCccCCCCCCCHHHHHHHhhhh--h
Confidence            3445555555555444 44455555555555442  23455555555555    45555555555555554432100  0


Q ss_pred             ccCcchhhhHHHHHHHHHHHhhc-cccccccccCCCCCcccc
Q 037143          163 LFPGAALQVQWEIKWFQHVKKLM-PRHFFTRYNDDGKTPDEV  203 (382)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~N~~G~Tpldl  203 (382)
                      ...+....   .....+.++... .+.+++.+|+.|+||++.
T Consensus       367 ~~ld~~~~---~~~~~eVVklLL~~GADIn~kn~~G~TPLh~  405 (764)
T PHA02716        367 NILDPETD---NDIRLDVIQCLISLGADITAVNCLGYTPLTS  405 (764)
T ss_pred             cccccccc---ccChHHHHHHHHHCCCCCCCcCCCCCChHHH
Confidence            00000000   000011122111 234578999999999994

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.6e-22  Score=200.90  Aligned_cols=139  Identities=17%  Similarity=0.166  Sum_probs=88.6

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      .++.++.|++.++......+++|.||||.|+  ..|+.+++++|++.|++.   +..+..|.||||.|+..|+.+++++|
T Consensus        13 d~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~--~~g~~~iv~~Ll~~Ga~~---n~~~~~~~t~L~~A~~~~~~~iv~~L   87 (434)
T PHA02874         13 DIEAIEKIIKNKGNCINISVDETTTPLIDAI--RSGDAKIVELFIKHGADI---NHINTKIPHPLLTAIKIGAHDIIKLL   87 (434)
T ss_pred             CHHHHHHHHHcCCCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3466666666543333334445777777777  567777777777766654   55556667777777777777777776


Q ss_pred             hhhCCCC----------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHH
Q 037143           95 LDTFPVA----------------------MWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHL  152 (382)
Q Consensus        95 l~~~~~~----------------------~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~  152 (382)
                      ++.+.+.                      ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+
T Consensus        88 l~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g----ad~n~~d~~g~tpLh~  163 (434)
T PHA02874         88 IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG----ADVNIEDDNGCYPIHI  163 (434)
T ss_pred             HHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC----CCCCCcCCCCCCHHHH
Confidence            6654321                      3345666777777777777777777777666    5666677777777777


Q ss_pred             HHhhCCCCcc
Q 037143          153 AAKYGDHLPL  162 (382)
Q Consensus       153 A~~~g~~~~~  162 (382)
                      |+..|+.+++
T Consensus       164 A~~~~~~~iv  173 (434)
T PHA02874        164 AIKHNFFDII  173 (434)
T ss_pred             HHHCCcHHHH
Confidence            7766665543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.5e-22  Score=203.64  Aligned_cols=184  Identities=17%  Similarity=0.124  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC--cHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG--VTEM   90 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~~   90 (382)
                      ...++++.|+++  |++.+. |..|.||||+|+....++.+++++|++.|++.   +..+..|.||||.|+..|  +.++
T Consensus        84 ~~~~iv~~Ll~~--ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~i  158 (480)
T PHA03100         84 DVKEIVKLLLEY--GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV---NIKNSDGENLLHLYLESNKIDLKI  158 (480)
T ss_pred             chHHHHHHHHHC--CCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCChHHH
Confidence            445566666666  333333 33366666666621235566666666665544   445555666666666666  6666


Q ss_pred             HHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCC------CCHHHHHHhhCC--CCcc
Q 037143           91 VKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQG------NSALHLAAKYGD--HLPL  162 (382)
Q Consensus        91 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G------~TpLH~A~~~g~--~~~~  162 (382)
                      ++.|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|    ++++..|..|      .||||.|+..|+  .+++
T Consensus       159 v~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g----a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv  233 (480)
T PHA03100        159 LKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKFLLDNG----ADINAGDIETLLFTIFETPLHIAACYNEITLEVV  233 (480)
T ss_pred             HHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHHHHHcC----CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHH
Confidence            6666666555 4445556666666666666666666666655    3444444444      444444444444  3322


Q ss_pred             cc---Ccc-----------hhhhHHHHHHHHHHHhh-ccccccccccCCCCCccccchhh
Q 037143          163 LF---PGA-----------ALQVQWEIKWFQHVKKL-MPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       163 ~~---~~~-----------~l~~~~~~~~~~~v~~~-~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +.   .|+           +++........+.++.. ..+.+++.+|.+|.||+++|.+.
T Consensus       234 ~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        234 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh
Confidence            21   010           11110000001111111 12235678999999999999765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.3e-22  Score=202.11  Aligned_cols=163  Identities=14%  Similarity=0.052  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCccc---------------------------------------
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFT---------------------------------------   53 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~---------------------------------------   53 (382)
                      ...++|+.|+++  |++.+. |.+|+||||+|+.  .++.+                                       
T Consensus        48 g~~e~vk~Ll~~--gadvn~~d~~g~TpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~  123 (477)
T PHA02878         48 RNLDVVKSLLTR--GHNVNQPDHRDLTPLHIICK--EPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTN  123 (477)
T ss_pred             CCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHH--CccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhC
Confidence            457899999998  666665 5569999999983  33222                                       


Q ss_pred             -------------------------ccccCCCCCchhhhhhhccCC-CCcHHHHHHHcCcHHHHHHHhhhCCCCccccCC
Q 037143           54 -------------------------ARETPLDPSTYKKKNARRSRR-KETPILVAAKMGVTEMVKKILDTFPVAMWDLDP  107 (382)
Q Consensus        54 -------------------------~v~~Ll~~~~~~~~~~~~~~~-g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~  107 (382)
                                               ++++|++.|++.   +..+.. |.||||+|+..|+.++++.|++.+++ ++.+|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi---n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-~n~~d~  199 (477)
T PHA02878        124 RYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI---NMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDK  199 (477)
T ss_pred             cccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC---CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-CCCcCC
Confidence                                     445555555544   556666 99999999999999999999999887 677899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhh-CCCCccccCcchhhhHHHHHHHHHHHhhcc
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKY-GDHLPLLFPGAALQVQWEIKWFQHVKKLMP  186 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~-g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~  186 (382)
                      .|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+.. ++.+++++               .++   .
T Consensus       200 ~g~tpLh~A~~~~~~~iv~~Ll~~g----a~in~~d~~g~TpLh~A~~~~~~~~iv~~---------------Ll~---~  257 (477)
T PHA02878        200 TNNSPLHHAVKHYNKPIVHILLENG----ASTDARDKCGNTPLHISVGYCKDYDILKL---------------LLE---H  257 (477)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHHHhcCCHHHHHH---------------HHH---c
Confidence            9999999999999999999999998    79999999999999999976 45444321               122   2


Q ss_pred             ccccccccC-CCCCccccchh
Q 037143          187 RHFFTRYND-DGKTPDEVFTE  206 (382)
Q Consensus       187 ~~~~~~~N~-~G~Tpldla~~  206 (382)
                      +.+++.++. .|.||+++|..
T Consensus       258 gadvn~~~~~~g~TpLh~A~~  278 (477)
T PHA02878        258 GVDVNAKSYILGLTALHSSIK  278 (477)
T ss_pred             CCCCCccCCCCCCCHHHHHcc
Confidence            233556665 79999999943

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.6e-22  Score=199.59  Aligned_cols=139  Identities=16%  Similarity=0.070  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHcCCCCCCcccc-cCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYV-YNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~-~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...+++++|+++  |.+.+.. .+|+||||+|+  ..|+.++++.|++.++..  .+..+.+|.||||+|+..|+.++++
T Consensus        46 ~~~~~v~~Ll~~--ga~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~~~~~iv~  119 (413)
T PHA02875         46 RDSEAIKLLMKH--GAIPDVKYPDIESELHDAV--EEGDVKAVEELLDLGKFA--DDVFYKDGMTPLHLATILKKLDIMK  119 (413)
T ss_pred             CCHHHHHHHHhC--CCCccccCCCcccHHHHHH--HCCCHHHHHHHHHcCCcc--cccccCCCCCHHHHHHHhCCHHHHH
Confidence            456899999998  6665554 45999999999  779999999999887643  1334567999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      .|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|..|+||||+|+..|+.++++
T Consensus       120 ~Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~TpL~~A~~~g~~eiv~  185 (413)
T PHA02875        120 LLIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLIDHK----ACLDIEDCCGCTPLIIAMAKGDIAICK  185 (413)
T ss_pred             HHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC----CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999887 6778899999999999999999999999998    689999999999999999999977654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.87  E-value=2e-22  Score=207.24  Aligned_cols=164  Identities=14%  Similarity=0.044  Sum_probs=133.2

Q ss_pred             HHHHHHHHHcCCCC-CCccc--ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCc--HH
Q 037143           15 AIQVLNELVDHRNP-DQYKY--VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGV--TE   89 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~-~~~~~--~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~--~~   89 (382)
                      ..+++++|+++  | ++.+.  |..|+||||+|+....++.+++++|++.|++.   +.+|..|.||||+|++.|+  .+
T Consensus       154 ~leiVk~LLe~--G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV---N~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        154 DLDLIKYMVDV--GIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV---NLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             CHHHHHHHHHC--CCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCCCHH
Confidence            35899999999  6 55554  55699999998743456789999999999887   7888999999999999995  59


Q ss_pred             HHHHHhhhCCCCccccCCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhCC
Q 037143           90 MVKKILDTFPVAMWDLDPAEKNILLLA-------------------------------------IENRRTSVYNLLLSRK  132 (382)
Q Consensus        90 ~v~~Ll~~~~~~~~~~d~~G~t~Lh~A-------------------------------------~~~g~~~iv~~Ll~~~  132 (382)
                      +++.|++.+++ ++.+|..|+||||.|                                     ++.|+.+++++|++.|
T Consensus       229 IVklLLe~GAD-VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G  307 (764)
T PHA02716        229 VIKKIIELGGD-MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG  307 (764)
T ss_pred             HHHHHHHcCCC-CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence            99999999988 788999999999975                                     4457788999999988


Q ss_pred             CccccccccccCCCCCHHHHHHhh--CCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchh
Q 037143          133 ALGQTIFWQVDNQGNSALHLAAKY--GDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTE  206 (382)
Q Consensus       133 ~~~~~~~~~~D~~G~TpLH~A~~~--g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~  206 (382)
                          +++|.+|.+|+||||+|+..  ++.+++++               .++.   +.+++.+|+.|.||++++..
T Consensus       308 ----AdIN~kD~~G~TPLH~Aaa~~~~~~eIVkl---------------LLe~---GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        308 ----VKLHYKDSAGRTCLHQYILRHNISTDIIKL---------------LHEY---GNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             ----CceeccCCCCCCHHHHHHHHhCCCchHHHH---------------HHHc---CCCCccCCCCCCCHHHHHHH
Confidence                79999999999999998754  34454321               1222   33467899999999998653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=1.7e-22  Score=200.75  Aligned_cols=144  Identities=24%  Similarity=0.278  Sum_probs=121.8

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhh-hCCCCccccCCCCCc
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILD-TFPVAMWDLDPAEKN  111 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t  111 (382)
                      .|++|.||||+|+  +.|+.+.++.|+..|++.   +.+++++.||||.||..|+.+.|+.||+ .+-...+..|-.|+|
T Consensus       269 ~d~dg~tpLH~a~--r~G~~~svd~Ll~~Ga~I---~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~t  343 (929)
T KOG0510|consen  269 EDNDGCTPLHYAA--RQGGPESVDNLLGFGASI---NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMT  343 (929)
T ss_pred             ccccCCchHHHHH--HcCChhHHHHHHHcCCcc---cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCC
Confidence            4667999999999  889999999999999988   8888999999999999999999999999 444556778999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCccccccc---cccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhcccc
Q 037143          112 ILLLAIENRRTSVYNLLLSRKALGQTIFW---QVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRH  188 (382)
Q Consensus       112 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~---~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~  188 (382)
                      |||+|+++||..++++|+++|    ++.+   ..|.+|+||||+|+..|+...+..                  ....+.
T Consensus       344 pLHlaa~~gH~~v~qlLl~~G----A~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~------------------Li~~Ga  401 (929)
T KOG0510|consen  344 PLHLAAKSGHDRVVQLLLNKG----ALFLNMSEADSDGNTALHLAAKYGNTSAVQK------------------LISHGA  401 (929)
T ss_pred             chhhhhhcCHHHHHHHHHhcC----hhhhcccccccCCchhhhHHHHhccHHHHHH------------------HHHcCC
Confidence            999999999999999999999    4444   569999999999999999765432                  012333


Q ss_pred             ccccccCCCCCcccc
Q 037143          189 FFTRYNDDGKTPDEV  203 (382)
Q Consensus       189 ~~~~~N~~G~Tpldl  203 (382)
                      ++..+|+.|+|++|+
T Consensus       402 ~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  402 DIGVKNKKGKSAFDT  416 (929)
T ss_pred             ceeeccccccccccc
Confidence            455778888888774

>PHA02798 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.4e-21  Score=197.04  Aligned_cols=131  Identities=11%  Similarity=0.124  Sum_probs=73.0

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCccccccc---CCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC---c
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQ---DVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG---V   87 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~---~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g---~   87 (382)
                      ..|++++|+++  |++.+. |..|.||||.|+..   ..+..+++++|++.|++.   +.+|..|+||||+|+..|   +
T Consensus        50 ~~~iv~~Ll~~--Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi---N~~d~~G~TpLh~a~~~~~~~~  124 (489)
T PHA02798         50 STDIVKLFINL--GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI---NKKNSDGETPLYCLLSNGYINN  124 (489)
T ss_pred             CHHHHHHHHHC--CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC---CCCCCCcCcHHHHHHHcCCcCh
Confidence            45566666666  445443 33366666665521   013456666666666554   555556666666666554   4


Q ss_pred             HHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHhCCCcccccccccc-CCCCCHHHHHHh
Q 037143           88 TEMVKKILDTFPVAMWDLDPAEKNILLLAIENRR---TSVYNLLLSRKALGQTIFWQVD-NQGNSALHLAAK  155 (382)
Q Consensus        88 ~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpLH~A~~  155 (382)
                      .+++++|++.+++ ++.+|.+|.||||+|++.++   .+++++|++.|    ++++.+| ..|.||||.+..
T Consensus       125 ~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g----adin~~~~~~~~t~Lh~~~~  191 (489)
T PHA02798        125 LEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG----VDINTHNNKEKYDTLHCYFK  191 (489)
T ss_pred             HHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC----CCcccccCcCCCcHHHHHHH
Confidence            5666666666555 45556666666666666655   56666666655    4555543 345555555543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.1e-21  Score=196.80  Aligned_cols=183  Identities=16%  Similarity=0.127  Sum_probs=125.4

Q ss_pred             HHHHHHHHHcCCCCCCccccc-CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC--cHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVY-NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG--VTEMV   91 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~-~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~~v   91 (382)
                      ..+++++|+++  |++.+..+ .|+||||+|+.+..++.+++++|++.|++.   +..|..|.||||+|+..+  +.+++
T Consensus        96 ~~~iv~lLl~~--ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~---~~~d~~g~tpL~~a~~~~~~~~~iv  170 (471)
T PHA03095         96 TLDVIKLLIKA--GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV---NALDLYGMTPLAVLLKSRNANVELL  170 (471)
T ss_pred             cHHHHHHHHHc--CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCCCHHHH
Confidence            46788888888  66666544 489999998854456778888888888776   667788888888888765  57888


Q ss_pred             HHHhhhCCCCccccCCCCCcHHHHHHHc--CCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCc--cc---c
Q 037143           92 KKILDTFPVAMWDLDPAEKNILLLAIEN--RRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLP--LL---F  164 (382)
Q Consensus        92 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~--~~---~  164 (382)
                      +.|++.+++. +..|..|+||||+|+..  ++.++++.|++.|    ++++.+|.+|+||||+|+..|+.+.  +.   .
T Consensus       171 ~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g----~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~  245 (471)
T PHA03095        171 RLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRAG----CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI  245 (471)
T ss_pred             HHHHHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHcC----CCCcccCCCCCCHHHHHHhcCCchHHHHHHHHH
Confidence            8888887774 34478888888888765  5677888888877    6778888888888888887775421  11   0


Q ss_pred             Ccc-----------hhhhHHHHHHHHHHHhh-ccccccccccCCCCCccccchhh
Q 037143          165 PGA-----------ALQVQWEIKWFQHVKKL-MPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       165 ~~~-----------~l~~~~~~~~~~~v~~~-~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      .|.           +++........+.++.. ..+.+++.+|++|+||+++|...
T Consensus       246 ~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~  300 (471)
T PHA03095        246 AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRN  300 (471)
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh
Confidence            111           12211111111122221 12345678999999999998765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.1e-21  Score=197.20  Aligned_cols=182  Identities=19%  Similarity=0.155  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCccc-----ccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHH--Hc
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRIS-----TFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAA--KM   85 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~-----A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa--~~   85 (382)
                      ...++++.|+++  |.+.+. +..|.||||+     |+  ..++.+++++|++.|++.   +..|..|.||||+|+  ..
T Consensus        46 ~~~~ivk~Ll~~--g~~~~~~~~~~~t~L~~~~~~~a~--~~~~~~iv~~Ll~~ga~i---~~~d~~g~tpL~~A~~~~~  118 (480)
T PHA03100         46 RNIDVVKILLDN--GADINSSTKNNSTPLHYLSNIKYN--LTDVKEIVKLLLEYGANV---NAPDNNGITPLLYAISKKS  118 (480)
T ss_pred             CCHHHHHHHHHc--CCCCCCccccCcCHHHHHHHHHHH--hhchHHHHHHHHHCCCCC---CCCCCCCCchhhHHHhccc
Confidence            347899999999  666665 4559999999     99  779999999999999876   777889999999999  99


Q ss_pred             CcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           86 GVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENR--RTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        86 g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      |+.+++++|++.+++ ++..|..|+||||+|+..|  +.+++++|++.|    ++++.+|.+|+||||+|+..|+.++++
T Consensus       119 ~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g----~din~~d~~g~tpL~~A~~~~~~~iv~  193 (480)
T PHA03100        119 NSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLIDKG----VDINAKNRYGYTPLHIAVEKGNIDVIK  193 (480)
T ss_pred             ChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC----CCcccccCCCCCHHHHHHHhCCHHHHH
Confidence            999999999999887 6778999999999999999  999999999999    799999999999999999999877765


Q ss_pred             c---Ccchhh-----------------hHHHHHH--HHHHHhhcc-ccccccccCCCCCccccchhh
Q 037143          164 F---PGAALQ-----------------VQWEIKW--FQHVKKLMP-RHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       164 ~---~~~~l~-----------------~~~~~~~--~~~v~~~~~-~~~~~~~N~~G~Tpldla~~~  207 (382)
                      .   .|+...                 .......  .+.++.... +.+++.+|..|.||++.|...
T Consensus       194 ~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~  260 (480)
T PHA03100        194 FLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN  260 (480)
T ss_pred             HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            2   122111                 1111111  222222222 244678999999999999875

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.85  E-value=2.4e-21  Score=173.41  Aligned_cols=133  Identities=11%  Similarity=0.096  Sum_probs=115.2

Q ss_pred             HHHHHHHHHcCCCCCCcccc--cCCCCCccccccc-CCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHH--cCcHH
Q 037143           15 AIQVLNELVDHRNPDQYKYV--YNGQDPRISTFGQ-DVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAK--MGVTE   89 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~--~~G~TPLh~A~~~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~--~g~~~   89 (382)
                      ..+++++|+++  +++.+..  ..|+||||+|+.. ..++.+++++|+++|++.   +.+|.+|.||||.|+.  .++.+
T Consensus        65 ~~eiv~~Ll~~--gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi---n~~d~~G~TpLh~a~~~~~~~~~  139 (209)
T PHA02859         65 NVEILKFLIEN--GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI---TEEDEDGKNLLHMYMCNFNVRIN  139 (209)
T ss_pred             CHHHHHHHHHC--CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHhccCCHH
Confidence            57999999999  6776653  3599999998742 235789999999999887   7889999999999986  47899


Q ss_pred             HHHHHhhhCCCCccccCCCCCcHHHH-HHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhC
Q 037143           90 MVKKILDTFPVAMWDLDPAEKNILLL-AIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYG  157 (382)
Q Consensus        90 ~v~~Ll~~~~~~~~~~d~~G~t~Lh~-A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g  157 (382)
                      ++++|++.+.+ ++.+|.+|+||||. |+..++.+++++|++.|    ++++.+|..|.||||+|...+
T Consensus       140 iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~G----adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        140 VIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTSLG----IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHhhhh
Confidence            99999999887 67789999999996 56788999999999999    799999999999999998764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=8.3e-22  Score=185.32  Aligned_cols=164  Identities=17%  Similarity=0.134  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHcCCCCCCc------ccccC---CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQY------KYVYN---GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAK   84 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~------~~~~~---G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~   84 (382)
                      ...++|++|+++. +++.      ..|.+   |.+||..|+  ..|+.++|++|++.+++.   |..+....|||--||.
T Consensus        53 GH~~vVeyLle~~-~a~~e~~GsV~FDge~IegappLWaAs--aAGHl~vVk~L~~~ga~V---N~tT~TNStPLraACf  126 (615)
T KOG0508|consen   53 GHADVVEYLLEHC-RASPEQGGSVRFDGETIEGAPPLWAAS--AAGHLEVVKLLLRRGASV---NDTTRTNSTPLRAACF  126 (615)
T ss_pred             CcHHHHHHHHHHh-cCCccCCceEEeCCcccCCCchhhHHh--ccCcHHHHHHHHHhcCcc---ccccccCCccHHHHHh
Confidence            3467899999853 2222      23433   899999888  679999999999999877   6666778899999999


Q ss_pred             cCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcccc
Q 037143           85 MGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLF  164 (382)
Q Consensus        85 ~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~  164 (382)
                      .|+.++|++|++++.| .+..|+.|+|.||+||.+||.+|+++|++.|    +++|.++..|||+||.|+..|+.+++++
T Consensus       127 DG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~I~qyLle~g----ADvn~ks~kGNTALH~caEsG~vdivq~  201 (615)
T KOG0508|consen  127 DGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVDIAQYLLEQG----ADVNAKSYKGNTALHDCAESGSVDIVQL  201 (615)
T ss_pred             cchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchHHHHHHHHhC----CCcchhcccCchHHHhhhhcccHHHHHH
Confidence            9999999999999888 7889999999999999999999999999999    8999999999999999999999877643


Q ss_pred             CcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          165 PGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       165 ~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                                     .+    .....-.+|..|.||+-.|...
T Consensus       202 ---------------Ll----~~ga~i~~d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  202 ---------------LL----KHGAKIDVDGHGMTPLLLAAVT  225 (615)
T ss_pred             ---------------HH----hCCceeeecCCCCchHHHHhhh
Confidence                           11    1122336788899999887654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=1.4e-21  Score=194.30  Aligned_cols=173  Identities=16%  Similarity=0.146  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHcCC---CCCCccccc-CCCCCcccccccCCCcccccccCCCCCchhhh------------hhhccCCCCc
Q 037143           14 WAIQVLNELVDHR---NPDQYKYVY-NGQDPRISTFGQDVNAFTARETPLDPSTYKKK------------NARRSRRKET   77 (382)
Q Consensus        14 ~~~eiv~~Ll~~~---~~~~~~~~~-~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~------------~~~~~~~g~t   77 (382)
                      .+.|.++..+.++   .....+.++ +|.||||.|+  ++|+.+.++..++.+.....            .+.+|.+|.|
T Consensus       198 ~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAv--e~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~t  275 (929)
T KOG0510|consen  198 GSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAV--EGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCT  275 (929)
T ss_pred             cchhhhhhhhccccchhhcccccccCCCCcchhhhh--hcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCc
Confidence            4567788888722   144555544 4999999999  88999999999887643211            1456889999


Q ss_pred             HHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCccccccccccCCCCCHHHHHHhh
Q 037143           78 PILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLS-RKALGQTIFWQVDNQGNSALHLAAKY  156 (382)
Q Consensus        78 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~D~~G~TpLH~A~~~  156 (382)
                      |||+||+.|+.+.++.|+..+.+ ++.+++++.||||.||.+|+.+.|+.|++ .+   ..+.|..|..|+||||+|++.
T Consensus       276 pLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~---~rllne~D~~g~tpLHlaa~~  351 (929)
T KOG0510|consen  276 PLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQESD---TRLLNESDLHGMTPLHLAAKS  351 (929)
T ss_pred             hHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHhCcC---ccccccccccCCCchhhhhhc
Confidence            99999999999999999999988 78899999999999999999999999999 44   378999999999999999999


Q ss_pred             CCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          157 GDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       157 g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      ||.+++++     .    ++|-.....      ....|.+|.||||+|...
T Consensus       352 gH~~v~ql-----L----l~~GA~~~~------~~e~D~dg~TaLH~Aa~~  387 (929)
T KOG0510|consen  352 GHDRVVQL-----L----LNKGALFLN------MSEADSDGNTALHLAAKY  387 (929)
T ss_pred             CHHHHHHH-----H----HhcChhhhc------ccccccCCchhhhHHHHh
Confidence            99777543     0    011000000      013499999999998753

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2.7e-21  Score=195.18  Aligned_cols=184  Identities=13%  Similarity=0.129  Sum_probs=134.2

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCccccccc----CCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHc---Cc
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQ----DVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKM---GV   87 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~----~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~---g~   87 (382)
                      ..+++++|+++  |++.+..+.|.||||.|+..    ..++.+++++|++.|++.   +.+|..|.||||.|+..   |+
T Consensus        49 ~~~iv~~Ll~~--GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi---n~~d~~g~tpL~~a~~~~~~~~  123 (494)
T PHA02989         49 KIKIVKLLIDN--GADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADI---NLKTFNGVSPIVCFIYNSNINN  123 (494)
T ss_pred             ChHHHHHHHHc--CCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHhcccCc
Confidence            46899999999  78877766789999988631    124567899999999887   77888899999988765   67


Q ss_pred             HHHHHHHhhhCCCCccccCCCCCcHHHHHHHc--CCHHHHHHHHhCCCcccccccc-ccCCCCCHHHHHHhhC----CCC
Q 037143           88 TEMVKKILDTFPVAMWDLDPAEKNILLLAIEN--RRTSVYNLLLSRKALGQTIFWQ-VDNQGNSALHLAAKYG----DHL  160 (382)
Q Consensus        88 ~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~-~D~~G~TpLH~A~~~g----~~~  160 (382)
                      .+++++|++++++..+.+|..|+||||+|+..  ++.+++++|++.|    ++++. .|..|.||||.|+..+    +.+
T Consensus       124 ~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G----adi~~~~~~~g~tpL~~a~~~~~~~~~~~  199 (494)
T PHA02989        124 CDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG----VNLFEKTSLYGLTPMNIYLRNDIDVISIK  199 (494)
T ss_pred             HHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcC----CCccccccccCCChHHHHHhcccccccHH
Confidence            89999999998884367889999999998765  5889999999998    78887 6889999999988764    444


Q ss_pred             cccc---CcchhhhHHH-----H------------HHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          161 PLLF---PGAALQVQWE-----I------------KWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       161 ~~~~---~~~~l~~~~~-----~------------~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +++.   .|+.+.....     +            ...+.++......+++.+|++|.||++.|...
T Consensus       200 iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~  266 (494)
T PHA02989        200 VIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV  266 (494)
T ss_pred             HHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh
Confidence            4432   2222211100     0            00011111223345788999999999999765

>PHA03095 ankyrin-like protein; Provisional

Probab=99.84  E-value=3.3e-21  Score=193.35  Aligned_cols=187  Identities=15%  Similarity=0.089  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHcCCCCCCcccccC-CCCCcccccccC-CCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC-cH
Q 037143           12 YTWAIQVLNELVDHRNPDQYKYVYN-GQDPRISTFGQD-VNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG-VT   88 (382)
Q Consensus        12 ~~~~~eiv~~Ll~~~~~~~~~~~~~-G~TPLh~A~~~~-~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g-~~   88 (382)
                      ....++++++|+++  |++.+..+. |+||||+|+... .++.+++++|++.|++.   +..+..|+||||+|+..| +.
T Consensus        23 ~~~~~~~v~~Ll~~--ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi---n~~~~~g~TpLh~A~~~~~~~   97 (471)
T PHA03095         23 SNVTVEEVRRLLAA--GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV---NAPERCGFTPLHLYLYNATTL   97 (471)
T ss_pred             CCCCHHHHHHHHHc--CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCcH
Confidence            33457999999999  777776554 999999999421 23899999999999887   778889999999999999 59


Q ss_pred             HHHHHHhhhCCCCccccCCCCCcHHHHHH--HcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC--CCcccc
Q 037143           89 EMVKKILDTFPVAMWDLDPAEKNILLLAI--ENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD--HLPLLF  164 (382)
Q Consensus        89 ~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~--~~~~~~  164 (382)
                      +++++|++.+++ ++.+|..|+||||+|+  ..++.+++++|++.|    ++++.+|.+|.||||+|+..++  .+++++
T Consensus        98 ~iv~lLl~~ga~-in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g----ad~~~~d~~g~tpL~~a~~~~~~~~~iv~~  172 (471)
T PHA03095         98 DVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG----ADVNALDLYGMTPLAVLLKSRNANVELLRL  172 (471)
T ss_pred             HHHHHHHHcCCC-CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            999999999888 7889999999999999  556889999999998    7999999999999999988764  233321


Q ss_pred             ---Ccc-----------hhhhHHHH--HHHHHHHhh-ccccccccccCCCCCccccchhhh
Q 037143          165 ---PGA-----------ALQVQWEI--KWFQHVKKL-MPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       165 ---~~~-----------~l~~~~~~--~~~~~v~~~-~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                         .|+           +++.....  ...+.++.. ..+.+.+.+|.+|.||+|+|....
T Consensus       173 Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        173 LIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence               111           11111100  000111111 123345788999999999988653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.84  E-value=2.2e-21  Score=187.82  Aligned_cols=168  Identities=14%  Similarity=0.011  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHHHcCCCCCCcc-------cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHH
Q 037143           12 YTWAIQVLNELVDHRNPDQYK-------YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAK   84 (382)
Q Consensus        12 ~~~~~eiv~~Ll~~~~~~~~~-------~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~   84 (382)
                      ...+.|++++|+.+  +.+.+       .+++++|+||+++....|+.+++++|+++|++.   +.  .++.||||.|+.
T Consensus        86 ~~~~k~~~~~l~s~--~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI---n~--~~~~t~lh~A~~  158 (437)
T PHA02795         86 YITYKDIISALVSK--NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI---YK--IECLNAYFRGIC  158 (437)
T ss_pred             hcchHHHHHHHHhc--ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC---CC--CCCCCHHHHHHH
Confidence            34568999999999  66644       566699999999965589999999999999986   44  356999999999


Q ss_pred             cCcHHHHHHHhhhCCCCcccc-----CCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCC
Q 037143           85 MGVTEMVKKILDTFPVAMWDL-----DPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDH  159 (382)
Q Consensus        85 ~g~~~~v~~Ll~~~~~~~~~~-----d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~  159 (382)
                      .|+.+++++|++++.+..+..     +..|.|++|.|+..++.+++++|+++|    +++|.+|.+|+||||+|+..|+.
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G----ADIN~kD~~G~TpLh~Aa~~g~~  234 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI----EDINQLDAGGRTLLYRAIYAGYI  234 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc----CCcCcCCCCCCCHHHHHHHcCCH
Confidence            999999999999986433333     235889999999999999999999999    89999999999999999999996


Q ss_pred             CccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          160 LPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                      ++++.               .++   .+.+++.+|++|.||+++|....
T Consensus       235 eiVel---------------LL~---~GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        235 DLVSW---------------LLE---NGANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             HHHHH---------------HHH---CCCCCCCcCCCCCCHHHHHHHcC
Confidence            65431               122   23456799999999999997653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.84  E-value=3.7e-21  Score=193.90  Aligned_cols=132  Identities=9%  Similarity=0.072  Sum_probs=77.7

Q ss_pred             HHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHc-----CcHHH
Q 037143           16 IQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKM-----GVTEM   90 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~-----g~~~~   90 (382)
                      +++|+.|++.  +...+. ..|.|+++.+.....++.+++++|+++|++.   +..|..|.||||.|+..     ++.++
T Consensus        18 ~~~v~~ll~~--~~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~TpL~~~~~n~~~~~~~~~i   91 (489)
T PHA02798         18 LSTVKLLIKS--CNPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANV---NGLDNEYSTPLCTILSNIKDYKHMLDI   91 (489)
T ss_pred             HHHHHHHHhc--CChhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCC---CCCCCCCCChHHHHHHhHHhHHhHHHH
Confidence            4566666654  322222 3355555433322344566666666666655   55556666666666543     55666


Q ss_pred             HHHHhhhCCCCccccCCCCCcHHHHHHHcC---CHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC
Q 037143           91 VKKILDTFPVAMWDLDPAEKNILLLAIENR---RTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus        91 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                      ++.|++.+++ ++.+|..|+||||+|+..+   +.+++++|++.|    ++++.+|.+|.||||+|+..++
T Consensus        92 v~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G----advn~~d~~g~tpL~~a~~~~~  157 (489)
T PHA02798         92 VKILIENGAD-INKKNSDGETPLYCLLSNGYINNLEILLFMIENG----ADTTLLDKDGFTMLQVYLQSNH  157 (489)
T ss_pred             HHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC----CCccccCCCCCcHHHHHHHcCC
Confidence            6666666665 5556666666666666654   456666666666    5666666666666666666654

>PHA02946 ankyin-like protein; Provisional

Probab=99.82  E-value=7.8e-21  Score=188.62  Aligned_cols=133  Identities=15%  Similarity=0.105  Sum_probs=81.9

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ..+++++|+++  |++.+. |.+|+||||+|+....+..+++++|++.|++..  ...|.+|.|||| ||..|+.++++.
T Consensus        84 ~~eiv~lLL~~--GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin--~~~d~~g~tpL~-aa~~~~~~vv~~  158 (446)
T PHA02946         84 NNRIVAMLLTH--GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN--NSVDEEGCGPLL-ACTDPSERVFKK  158 (446)
T ss_pred             CHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc--cccCCCCCcHHH-HHHCCChHHHHH
Confidence            35788888887  666654 455888888877322334677778887776541  124556666665 555566666666


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhC
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENR--RTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYG  157 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g  157 (382)
                      |++.+.+ ++.+|..|+||||+|+..+  +.+++++|++.|    ++++.+|.+|+||||+|+..+
T Consensus       159 Ll~~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~G----adin~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        159 IMSIGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLG----ISPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             HHhcccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHcC
Confidence            6665554 4555666666666655543  245666666665    566666666666666666554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.82  E-value=1.2e-20  Score=200.93  Aligned_cols=161  Identities=15%  Similarity=0.066  Sum_probs=133.1

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ..++++.|+++  +.+.+. |.+|+||||+|+  ..|+.+++++|+++|++.   +.+|.+|.||||.|+..|+.++++.
T Consensus       537 ~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~gadi---n~~d~~G~TpL~~A~~~g~~~iv~~  609 (823)
T PLN03192        537 NAALLEELLKA--KLDPDIGDSKGRTPLHIAA--SKGYEDCVLVLLKHACNV---HIRDANGNTALWNAISAKHHKIFRI  609 (823)
T ss_pred             CHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH--HcChHHHHHHHHhcCCCC---CCcCCCCCCHHHHHHHhCCHHHHHH
Confidence            46789999988  666665 555999999999  779999999999998876   7788899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHH
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQW  173 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~  173 (382)
                      |++.+.. .  .+..|.++||.|+..|+.++++.|+++|    +++|.+|.+|+||||+|+..|+.+++++         
T Consensus       610 L~~~~~~-~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G----adin~~d~~G~TpLh~A~~~g~~~iv~~---------  673 (823)
T PLN03192        610 LYHFASI-S--DPHAAGDLLCTAAKRNDLTAMKELLKQG----LNVDSEDHQGATALQVAMAEDHVDMVRL---------  673 (823)
T ss_pred             HHhcCcc-c--CcccCchHHHHHHHhCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHCCcHHHHHH---------
Confidence            9976544 2  2456889999999999999999999998    7999999999999999999999766432         


Q ss_pred             HHHHHHHHHhhccccccccccCCC-CCccccchhh
Q 037143          174 EIKWFQHVKKLMPRHFFTRYNDDG-KTPDEVFTES  207 (382)
Q Consensus       174 ~~~~~~~v~~~~~~~~~~~~N~~G-~Tpldla~~~  207 (382)
                            .++.   +.+++..|++| .||.+++...
T Consensus       674 ------Ll~~---GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        674 ------LIMN---GADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             ------HHHc---CCCCCCCCCCCCCCHHHHHHHH
Confidence                  1222   23456788888 8999887554

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1e-20  Score=190.88  Aligned_cols=172  Identities=12%  Similarity=0.074  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccc-cCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHc--CcHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFG-QDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKM--GVTE   89 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~-~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~--g~~~   89 (382)
                      ...+++++|+++  |++.+. |.+|+||||.|+. +..++.+++++|++.|++..  +.+|..|+||||+|+..  ++.+
T Consensus        86 ~~~~iv~~Ll~~--Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin--~~~d~~g~tpLh~a~~~~~~~~~  161 (494)
T PHA02989         86 KIKKIVKLLLKF--GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVN--DVKNSRGYNLLHMYLESFSVKKD  161 (494)
T ss_pred             hHHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcc--cccCCCCCCHHHHHHHhccCCHH
Confidence            457899999999  777775 4459999998763 13478899999999998641  35677899999998764  6899


Q ss_pred             HHHHHhhhCCCCccccCCCCCcHHHHHHHcC----CHHHHHHHHhCCCcc------------------------------
Q 037143           90 MVKKILDTFPVAMWDLDPAEKNILLLAIENR----RTSVYNLLLSRKALG------------------------------  135 (382)
Q Consensus        90 ~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g----~~~iv~~Ll~~~~~~------------------------------  135 (382)
                      ++++|++.+++.....|..|.||||+|+..+    +.+++++|++.|...                              
T Consensus       162 iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~  241 (494)
T PHA02989        162 VIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLN  241 (494)
T ss_pred             HHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHH
Confidence            9999999998844336789999999998765    889999999987320                              


Q ss_pred             ----ccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          136 ----QTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       136 ----~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                          .+++|.+|.+|+||||+|+..|+.++++.               .++   .+.+++.+|++|.||+++|...
T Consensus       242 ~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~---------------LL~---~Gadin~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        242 FILKYIKINKKDKKGFNPLLISAKVDNYEAFNY---------------LLK---LGDDIYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             HHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHH---------------HHH---cCCCccccCCCCCCHHHHHHHc
Confidence                12456778888889998888887655432               122   2345679999999999999765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=1.2e-20  Score=172.57  Aligned_cols=149  Identities=19%  Similarity=0.177  Sum_probs=126.8

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHH-----cCcHHHHHHHhhhCCCCccccCC
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAK-----MGVTEMVKKILDTFPVAMWDLDP  107 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~-----~g~~~~v~~Ll~~~~~~~~~~d~  107 (382)
                      .|.+|+|+||||+  ...++++|+.|++.+-  .+.+++|.-|.||+++|+.     ..+.++|..|.+.+ +..-....
T Consensus       264 aDsNGNTALHYsV--SHaNF~VV~~LLDSgv--C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ  338 (452)
T KOG0514|consen  264 ADSNGNTALHYAV--SHANFDVVSILLDSGV--CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ  338 (452)
T ss_pred             hcCCCCeeeeeee--cccchHHHHHHhccCc--ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence            5888999999999  5699999999999873  3448889999999999985     34678899998764 43333467


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccc
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPR  187 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~  187 (382)
                      .|+|+|++|+.+|+.++|+.|+..|    +|+|.+|.+|.|+|++|+.+||.+++++                 ....|.
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacg----AdVNiQDdDGSTALMCA~EHGhkEivkl-----------------LLA~p~  397 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACG----ADVNIQDDDGSTALMCAAEHGHKEIVKL-----------------LLAVPS  397 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHcc----CCCccccCCccHHHhhhhhhChHHHHHH-----------------HhccCc
Confidence            8999999999999999999999999    8999999999999999999999887642                 224577


Q ss_pred             cccccccCCCCCccccchhh
Q 037143          188 HFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       188 ~~~~~~N~~G~Tpldla~~~  207 (382)
                      .+....|.+|-|++.||-+.
T Consensus       398 cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  398 CDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             ccceeecCCCchhhhhHHhc
Confidence            77889999999999998775

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.6e-20  Score=196.76  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=70.5

Q ss_pred             HHHHHHHcCCCCCCccc-ccCCCCCcccccccCCC-cccccccCCCCCchhhhhhhccCCCCcHHHHHHHc-CcHHHHHH
Q 037143           17 QVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVN-AFTARETPLDPSTYKKKNARRSRRKETPILVAAKM-GVTEMVKK   93 (382)
Q Consensus        17 eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~-g~~~~v~~   93 (382)
                      +++++|+++  +.+.+. |.+|+||||+|+  ..+ ..+++++|+..|++.   +..|..|.||||+|+.. ++.++++.
T Consensus       288 ~iv~lLl~~--gadin~~d~~g~TpLh~Aa--~~g~~~~~v~~Ll~~gadi---n~~d~~g~TpLh~A~~~~~~~~iv~l  360 (682)
T PHA02876        288 RLVPKLLER--GADVNAKNIKGETPLYLMA--KNGYDTENIRTLIMLGADV---NAADRLYITPLHQASTLDRNKDIVIT  360 (682)
T ss_pred             HHHHHHHHC--CCCCCCcCCCCCCHHHHHH--HhCCCHHHHHHHHHcCCCC---CCcccCCCcHHHHHHHhCCcHHHHHH
Confidence            466666666  454443 334777777776  334 355566666655544   44455556666665553 24555555


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhh
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKY  156 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~  156 (382)
                      |++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|..|.||||+|+..
T Consensus       361 Ll~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g----ad~~~~~~~g~T~Lh~A~~~  418 (682)
T PHA02876        361 LLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYG----ADIEALSQKIGTALHFALCG  418 (682)
T ss_pred             HHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCccccCCCCCchHHHHHHc
Confidence            5555444 4455555666666666655555555555555    34444555555555555443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.81  E-value=2.6e-20  Score=195.10  Aligned_cols=185  Identities=14%  Similarity=0.010  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHH
Q 037143           12 YTWAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEM   90 (382)
Q Consensus        12 ~~~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~   90 (382)
                      +....+++++|+++  |++.+. |..|+||||+|+  ..|+.+++++|++.|++.   +..+.+|.||||.|+..|+.++
T Consensus       154 ~~~~~~i~k~Ll~~--Gadvn~~d~~G~TpLh~Aa--~~G~~~iv~~LL~~Gad~---n~~~~~g~t~L~~A~~~~~~~i  226 (682)
T PHA02876        154 QQDELLIAEMLLEG--GADVNAKDIYCITPIHYAA--ERGNAKMVNLLLSYGADV---NIIALDDLSVLECAVDSKNIDT  226 (682)
T ss_pred             HCCcHHHHHHHHhC--CCCCCCCCCCCCCHHHHHH--HCCCHHHHHHHHHCCCCc---CccCCCCCCHHHHHHHcCCHHH
Confidence            33457899999999  777775 445999999999  789999999999999876   6778889999999999999999


Q ss_pred             HHHHhhhCCC----------------------------CccccCCCCCcHHHHHHHcCCH-HHHHHHHhCCCcccccccc
Q 037143           91 VKKILDTFPV----------------------------AMWDLDPAEKNILLLAIENRRT-SVYNLLLSRKALGQTIFWQ  141 (382)
Q Consensus        91 v~~Ll~~~~~----------------------------~~~~~d~~G~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~  141 (382)
                      ++.|++.+++                            .++..|..|+||||+|+..++. +++++|++.|    ++++.
T Consensus       227 vk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g----adin~  302 (682)
T PHA02876        227 IKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG----ADVNA  302 (682)
T ss_pred             HHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC----CCCCC
Confidence            9888765432                            2455678899999999999986 6899999998    78999


Q ss_pred             ccCCCCCHHHHHHhhCC-CCcccc---Ccchh-----------hhHHHHH-HHHHHHh-hccccccccccCCCCCccccc
Q 037143          142 VDNQGNSALHLAAKYGD-HLPLLF---PGAAL-----------QVQWEIK-WFQHVKK-LMPRHFFTRYNDDGKTPDEVF  204 (382)
Q Consensus       142 ~D~~G~TpLH~A~~~g~-~~~~~~---~~~~l-----------~~~~~~~-~~~~v~~-~~~~~~~~~~N~~G~Tpldla  204 (382)
                      +|.+|+||||+|+..|+ .+.++.   .|+..           ....... ..+.++. ...+.+++.+|..|.||+++|
T Consensus       303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~A  382 (682)
T PHA02876        303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYA  382 (682)
T ss_pred             cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHH
Confidence            99999999999999884 333221   12111           1111000 0011111 123445778999999999998


Q ss_pred             hhh
Q 037143          205 TES  207 (382)
Q Consensus       205 ~~~  207 (382)
                      ...
T Consensus       383 a~~  385 (682)
T PHA02876        383 AVR  385 (682)
T ss_pred             HHc
Confidence            765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.81  E-value=2.6e-20  Score=192.16  Aligned_cols=141  Identities=11%  Similarity=-0.007  Sum_probs=92.0

Q ss_pred             HhHHHHHHHHHHHcCCCCCCccc-ccCCCCCcccccc-cCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcH
Q 037143           11 TYTWAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFG-QDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVT   88 (382)
Q Consensus        11 ~~~~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~-~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~   88 (382)
                      ...-+++.++.|+.+  +.+.+. |.+|+||||+|+. +..|+.+++++|++.|++.   +..+..|+||||.|+..|+.
T Consensus         7 ~~~~~~~~~~~l~~~--~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v---~~~~~~g~TpL~~Aa~~g~~   81 (661)
T PHA02917          7 NEEVALDELKQMLRD--RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP---LHKNWRQLTPLEEYTNSRHV   81 (661)
T ss_pred             hhHHHHHHHHHHHhc--cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc---cccCCCCCCHHHHHHHcCCh
Confidence            345677888888876  444444 6679999999752 1457889999999998876   66788899999999988874


Q ss_pred             H----HHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHH--hhCCCCcc
Q 037143           89 E----MVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAA--KYGDHLPL  162 (382)
Q Consensus        89 ~----~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~--~~g~~~~~  162 (382)
                      +    +++.|++.+.. .+..|  ..+++|.|+.+|+.+++++|++.|    +++|.+|.+|+||||.|+  ..|+.+++
T Consensus        82 ~v~~~~~~~Ll~~~~~-~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~G----adin~~d~~g~T~L~~~~a~~~~~~eiv  154 (661)
T PHA02917         82 KVNKDIAMALLEATGY-SNIND--FNIFSYMKSKNVDVDLIKVLVEHG----FDLSVKCENHRSVIENYVMTDDPVPEII  154 (661)
T ss_pred             hHHHHHHHHHHhccCC-CCCCC--cchHHHHHhhcCCHHHHHHHHHcC----CCCCccCCCCccHHHHHHHccCCCHHHH
Confidence            3    44555554322 12222  224555566666666666666666    566666666666666433  34455554


Q ss_pred             c
Q 037143          163 L  163 (382)
Q Consensus       163 ~  163 (382)
                      +
T Consensus       155 k  155 (661)
T PHA02917        155 D  155 (661)
T ss_pred             H
Confidence            4

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=4.3e-20  Score=159.84  Aligned_cols=120  Identities=13%  Similarity=0.065  Sum_probs=103.1

Q ss_pred             cccCCCCCcccccccCCCcccccccCCC------CCchhhhhhhccCCCCcHHHHHHHcCc----HHHHHHHhhhCCCCc
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLD------PSTYKKKNARRSRRKETPILVAAKMGV----TEMVKKILDTFPVAM  102 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~------~~~~~~~~~~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~  102 (382)
                      .+..|+||||+|+  ..|+.++++.|+.      .+++.   +.+|..|+||||+|+..|+    .++++.|++.+++ +
T Consensus        17 ~~~~g~t~Lh~Aa--~~g~~~~v~~l~~~~~~~~~ga~i---n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-i   90 (169)
T PHA02741         17 KNSEGENFFHEAA--RCGCFDIIARFTPFIRGDCHAAAL---NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-I   90 (169)
T ss_pred             cccCCCCHHHHHH--HcCCHHHHHHHHHHhccchhhhhh---hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-C
Confidence            4566999999999  7899999988743      22333   7778899999999999999    5889999998887 5


Q ss_pred             cccCC-CCCcHHHHHHHcCCHHHHHHHHhC-CCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          103 WDLDP-AEKNILLLAIENRRTSVYNLLLSR-KALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       103 ~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      +.+|. +|+||||+|+..++.+++++|++. +    ++++.+|.+|.||||+|+..++.+++
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g----~~~~~~n~~g~tpL~~A~~~~~~~iv  148 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPG----IDLHFCNADNKSPFELAIDNEDVAMM  148 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCCCcCCCCCCCHHHHHHHCCCHHHH
Confidence            77775 899999999999999999999985 5    78999999999999999999986654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.80  E-value=7.4e-20  Score=177.21  Aligned_cols=135  Identities=16%  Similarity=0.124  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhh---ccCCCCcHHHHHHHcCcHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNAR---RSRRKETPILVAAKMGVTEM   90 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~---~~~~g~tpLh~Aa~~g~~~~   90 (382)
                      ...|++++|+++  |++.+. .++.||||.|+  ..++.+++++|+++|++......   .+..|.||+|.|+..++.++
T Consensus       129 n~~eiV~~LI~~--GADIn~-~~~~t~lh~A~--~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eI  203 (437)
T PHA02795        129 VEIDIVDFMVDH--GAVIYK-IECLNAYFRGI--CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEI  203 (437)
T ss_pred             CCHHHHHHHHHC--CCCCCC-CCCCCHHHHHH--HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHH
Confidence            567999999999  888776 45699999999  78999999999999974311110   11347899999999999999


Q ss_pred             HHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC
Q 037143           91 VKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus        91 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                      ++.|++++++ ++.+|..|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+..|+
T Consensus       204 ve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G----AdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        204 YKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENG----ANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999988 7889999999999999999999999999999    8999999999999999999985

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=2.9e-20  Score=175.01  Aligned_cols=137  Identities=15%  Similarity=0.107  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHcCCCCCCcccccC-CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYN-GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~-G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      .++|+||.|+++  +++.+.... ..|||--||  -.|+.+++++|++++++.   +..|..|.|+||+||.+||.++++
T Consensus        95 GHl~vVk~L~~~--ga~VN~tT~TNStPLraAC--fDG~leivKyLvE~gad~---~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   95 GHLEVVKLLLRR--GASVNDTTRTNSTPLRAAC--FDGHLEIVKYLVEHGADP---EIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             CcHHHHHHHHHh--cCccccccccCCccHHHHH--hcchhHHHHHHHHcCCCC---cccccCCCeeEEeeeccCchHHHH
Confidence            458999999999  666665444 779999999  679999999999999987   777889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +|++.++| ++.++.+|+|+||.+++.|+.+++++|++++     ..-.+|..|.|||-.|+..|+.+++.
T Consensus       168 yLle~gAD-vn~ks~kGNTALH~caEsG~vdivq~Ll~~g-----a~i~~d~~GmtPL~~Aa~tG~~~iVe  232 (615)
T KOG0508|consen  168 YLLEQGAD-VNAKSYKGNTALHDCAESGSVDIVQLLLKHG-----AKIDVDGHGMTPLLLAAVTGHTDIVE  232 (615)
T ss_pred             HHHHhCCC-cchhcccCchHHHhhhhcccHHHHHHHHhCC-----ceeeecCCCCchHHHHhhhcchHHHH
Confidence            99999998 7889999999999999999999999999999     33367888999999999999977754

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=2.1e-19  Score=154.97  Aligned_cols=120  Identities=10%  Similarity=0.041  Sum_probs=100.9

Q ss_pred             cccCCCCCcccccccCCCcc----cccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHH---HHHHhhhCCCCcccc
Q 037143           33 YVYNGQDPRISTFGQDVNAF----TARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEM---VKKILDTFPVAMWDL  105 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~---v~~Ll~~~~~~~~~~  105 (382)
                      .++++.+++|.|+  +.++.    +++++|.+.+...   +..|..|+||||+|+..|+.+.   +++|++.+.+ ++.+
T Consensus        16 ~~~~~~~~l~~a~--~~g~~~~l~~~~~~l~~~g~~~---~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~   89 (166)
T PHA02743         16 IDEDEQNTFLRIC--RTGNIYELMEVAPFISGDGHLL---HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INAR   89 (166)
T ss_pred             hccCCCcHHHHHH--HcCCHHHHHHHHHHHhhcchhh---hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCC
Confidence            3556889999999  66776    5566777777654   6678899999999999988654   8899999887 6777


Q ss_pred             C-CCCCcHHHHHHHcCCHHHHHHHHh-CCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          106 D-PAEKNILLLAIENRRTSVYNLLLS-RKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       106 d-~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      | ..|+||||+|+..|+.+++++|++ .+    ++++.+|.+|+||||+|+..++.+++
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~g----ad~~~~d~~g~tpL~~A~~~~~~~iv  144 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLG----VNLGAINYQHETAYHIAYKMRDRRMM  144 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccC----CCccCcCCCCCCHHHHHHHcCCHHHH
Confidence            7 589999999999999999999995 56    79999999999999999999986554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.78  E-value=3e-19  Score=153.16  Aligned_cols=135  Identities=19%  Similarity=0.155  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHH
Q 037143           12 YTWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMV   91 (382)
Q Consensus        12 ~~~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v   91 (382)
                      |...++.+..+.++   ..+..|..|.|||.+|+  ..|++.+|++|++.|++.   +...+...|+|.+|++.|..++|
T Consensus       138 hql~L~~~~~~~~n---~VN~~De~GfTpLiWAa--a~G~i~vV~fLL~~GAdp---~~lgk~resALsLAt~ggytdiV  209 (296)
T KOG0502|consen  138 HQLHLDVVDLLVNN---KVNACDEFGFTPLIWAA--AKGHIPVVQFLLNSGADP---DALGKYRESALSLATRGGYTDIV  209 (296)
T ss_pred             HHHHHHHHHHHhhc---cccCccccCchHhHHHH--hcCchHHHHHHHHcCCCh---hhhhhhhhhhHhHHhcCChHHHH
Confidence            44455666555443   44456777999999999  789999999999999887   55667789999999999999999


Q ss_pred             HHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCC
Q 037143           92 KKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDH  159 (382)
Q Consensus        92 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~  159 (382)
                      ++|+.+.++ ++..|-+|-|||-+|++.||.++++.|++.|    ++++..|..|++++.+|+..|+.
T Consensus       210 ~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sG----Ad~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  210 ELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNSG----ADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             HHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhcC----CCcccccccCCcHHHHHHHhhhH
Confidence            999999998 7889999999999999999999999999999    89999999999999999999983

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=4e-19  Score=147.09  Aligned_cols=141  Identities=17%  Similarity=0.052  Sum_probs=114.5

Q ss_pred             ccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCC
Q 037143           42 ISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRR  121 (382)
Q Consensus        42 h~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  121 (382)
                      .+|+  ..+....|+.|++..++.  .|.+|.+|.||||.|+.+|+.++|+.|+..+++ .+.+...|+||||.||..++
T Consensus        68 lwaa--e~nrl~eV~~lL~e~an~--vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   68 LWAA--EKNRLTEVQRLLSEKANH--VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHH--hhccHHHHHHHHHhcccc--ccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccc
Confidence            5566  667888888888776653  388899999999999999999999999999888 78889999999999999999


Q ss_pred             HHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCcc
Q 037143          122 TSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPD  201 (382)
Q Consensus       122 ~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpl  201 (382)
                      .+++..|+++|    +++|++.+.-.||||+|+...+...-          .+   +......+.+   ..+|+.+.||+
T Consensus       143 ~~va~~LLqhg----aDVnA~t~g~ltpLhlaa~~rn~r~t----------~~---~Ll~dryi~p---g~~nn~eeta~  202 (228)
T KOG0512|consen  143 FEVAGRLLQHG----ADVNAQTKGLLTPLHLAAGNRNSRDT----------LE---LLLHDRYIHP---GLKNNLEETAF  202 (228)
T ss_pred             hhHHHHHHhcc----CcccccccccchhhHHhhcccchHHH----------HH---HHhhccccCh---hhhcCccchHH
Confidence            99999999999    89999998889999999987764321          00   0011112222   37899999999


Q ss_pred             ccchhh
Q 037143          202 EVFTES  207 (382)
Q Consensus       202 dla~~~  207 (382)
                      ++|+..
T Consensus       203 ~iARRT  208 (228)
T KOG0512|consen  203 DIARRT  208 (228)
T ss_pred             HHHHHh
Confidence            999875

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1e-18  Score=155.38  Aligned_cols=138  Identities=20%  Similarity=0.154  Sum_probs=108.0

Q ss_pred             CCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 037143           49 VNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLL  128 (382)
Q Consensus        49 ~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~L  128 (382)
                      .|+.--|++-++....  +.|..|+.|.+|||+||+.|+..+++.|+++++. ++..+....||||+|+.+||.++|+.|
T Consensus        10 egna~qvrlwld~teh--dln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen   10 EGNAFQVRLWLDDTEH--DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             cCCeEEEEEEecCccc--ccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHH
Confidence            3444444554443221  2377888999999999999999999999999876 677777788999999999999999999


Q ss_pred             HhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          129 LSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       129 l~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                      ++..    +++|+.+..||||||+||..|+.++..          +     .   ...+..+++-|++|.||+|.++..-
T Consensus        87 l~~k----advnavnehgntplhyacfwgydqiae----------d-----l---i~~ga~v~icnk~g~tpldkakp~l  144 (448)
T KOG0195|consen   87 LSRK----ADVNAVNEHGNTPLHYACFWGYDQIAE----------D-----L---ISCGAAVNICNKKGMTPLDKAKPML  144 (448)
T ss_pred             HHHh----cccchhhccCCCchhhhhhhcHHHHHH----------H-----H---HhccceeeecccCCCCchhhhchHH
Confidence            9987    799999999999999999999854421          0     1   1223346789999999999987665


Q ss_pred             HHH
Q 037143          209 RDL  211 (382)
Q Consensus       209 ~~l  211 (382)
                      ++.
T Consensus       145 ~~~  147 (448)
T KOG0195|consen  145 KNT  147 (448)
T ss_pred             HHH
Confidence            443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.76  E-value=5.6e-19  Score=185.54  Aligned_cols=120  Identities=23%  Similarity=0.233  Sum_probs=98.2

Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCC
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNS  148 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  148 (382)
                      +.++.+|.||||.||.+|+.++|++|++++++ ++.+|+.|+||||.||..|+.+++++|+++|    +++|..|.+|+|
T Consensus       534 ~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd-v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G----A~vna~d~~g~T  608 (1143)
T KOG4177|consen  534 DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD-VNAKDKLGYTPLHQAAQQGHNDIAELLLKHG----ASVNAADLDGFT  608 (1143)
T ss_pred             ehhcccccchHHHHHhcCCchHHHHhhhCCcc-ccccCCCCCChhhHHHHcChHHHHHHHHHcC----CCCCcccccCcc
Confidence            55677899999999999999999999999988 6778899999999999999999999999999    899999999999


Q ss_pred             HHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhc-cccccccccCCCCCccccchhh
Q 037143          149 ALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLM-PRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       149 pLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      |||+|+..|+..+++..              .+.... ........|..|.||.++..+.
T Consensus       609 pL~iA~~lg~~~~~k~l--------------~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  609 PLHIAVRLGYLSVVKLL--------------KVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             hhHHHHHhcccchhhHH--------------HhccCccccccchhhhhcccChhhHHHHh
Confidence            99999999998775420              000000 0111346788899999887664

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=1.7e-19  Score=153.62  Aligned_cols=122  Identities=7%  Similarity=-0.030  Sum_probs=95.7

Q ss_pred             ccccCCCCCcccccccCCCcccccccCCCCCc----hhhhhhhccCCCCcHHHHHHHcCcH---HHHHHHhhhCCCCccc
Q 037143           32 KYVYNGQDPRISTFGQDVNAFTARETPLDPST----YKKKNARRSRRKETPILVAAKMGVT---EMVKKILDTFPVAMWD  104 (382)
Q Consensus        32 ~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~  104 (382)
                      ..|.+|+||||+|+  ..|+.  ++++...+.    +....+..|.+|+||||+|+..|+.   ++++.|++.+.+ ++.
T Consensus        12 ~~d~~g~tpLh~A~--~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~   86 (154)
T PHA02736         12 EPDIEGENILHYLC--RNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-ING   86 (154)
T ss_pred             hcCCCCCCHHHHHH--HhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-ccc
Confidence            34666999999999  55653  333321111    0111245578899999999999987   468899999887 666


Q ss_pred             cC-CCCCcHHHHHHHcCCHHHHHHHHhC-CCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          105 LD-PAEKNILLLAIENRRTSVYNLLLSR-KALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       105 ~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      +| .+|+||||+|+..|+.+++++|++. +    ++++.+|..|.||||+|+..|+.+++
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g----~d~n~~~~~g~tpL~~A~~~~~~~i~  142 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPG----VNMEILNYAFKTPYYVACERHDAKMM  142 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCC----CCCccccCCCCCHHHHHHHcCCHHHH
Confidence            77 5999999999999999999999985 5    79999999999999999999986654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.75  E-value=1.7e-18  Score=178.66  Aligned_cols=137  Identities=13%  Similarity=0.021  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccC---------------------------------CCcccccccCC
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQD---------------------------------VNAFTARETPL   59 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~---------------------------------~~~~~~v~~Ll   59 (382)
                      ...|++++||++  |++.+. +..|+||||+|+...                                 +++.+++++|+
T Consensus        46 ~~~~~v~~Ll~~--ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll  123 (661)
T PHA02917         46 NNVEVVKLLLDS--GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLV  123 (661)
T ss_pred             CcHHHHHHHHHC--CCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHH
Confidence            447999999998  666665 445999999888411                                 12456667777


Q ss_pred             CCCchhhhhhhccCCCCcHHHHHH--HcCcHHHHHHHhhhCCCCccccC---CCC-----------CcHHHHHHH-----
Q 037143           60 DPSTYKKKNARRSRRKETPILVAA--KMGVTEMVKKILDTFPVAMWDLD---PAE-----------KNILLLAIE-----  118 (382)
Q Consensus        60 ~~~~~~~~~~~~~~~g~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d---~~G-----------~t~Lh~A~~-----  118 (382)
                      +.|++.   +..|..|+||||.|+  ..|+.+++++|++++++ ++..|   ..|           +||||+|+.     
T Consensus       124 ~~Gadi---n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~-vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~  199 (661)
T PHA02917        124 EHGFDL---SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS-VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYS  199 (661)
T ss_pred             HcCCCC---CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC-ccccccccccccccccccccccccHHHHHHhhcccc
Confidence            777766   777889999999654  57899999999999887 33333   234           599999986     


Q ss_pred             ------cCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCC
Q 037143          119 ------NRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHL  160 (382)
Q Consensus       119 ------~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~  160 (382)
                            .++.+++++|++.|    +++|.+|.+|+||||+|+..|+.+
T Consensus       200 ~~~~~~~~~~eiv~~Li~~G----advn~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        200 ESDTRAYVRPEVVKCLINHG----IKPSSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             cccccccCcHHHHHHHHHCC----CCcccCCCCCCcHHHHHHHcCCCc
Confidence                  46899999999999    899999999999999999999853

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=1.5e-18  Score=161.87  Aligned_cols=120  Identities=11%  Similarity=0.002  Sum_probs=104.0

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhc----cCCCCcHHHHHHHcCcHHHHHHHhhhCCCCcccc-CC
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARR----SRRKETPILVAAKMGVTEMVKKILDTFPVAMWDL-DP  107 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~  107 (382)
                      .|+.|+||+++++. ..++.+++++|+++|++.   +.+    +..|.||||+|+..|+.+++++|++++++ ++.+ +.
T Consensus        28 ~d~~~~~~lL~~A~-~~~~~eivk~LL~~GAdi---N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~  102 (300)
T PHA02884         28 KNKICIANILYSSI-KFHYTDIIDAILKLGADP---EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEE  102 (300)
T ss_pred             cCcCCCCHHHHHHH-HcCCHHHHHHHHHCCCCc---cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCC
Confidence            46668887665553 678999999999999876   444    45899999999999999999999999988 5654 56


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCc
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLP  161 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~  161 (382)
                      .|.||||+|+..|+.+++++|++.|    ++++.+|.+|.||||+|+..++.++
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~G----Adin~kd~~G~TpL~~A~~~~~~~~  152 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYG----ADINIQTNDMVTPIELALMICNNFL  152 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHhCChhH
Confidence            8999999999999999999999999    8999999999999999999877554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.75  E-value=2e-18  Score=182.54  Aligned_cols=182  Identities=16%  Similarity=0.080  Sum_probs=115.1

Q ss_pred             HHHHHHHHcCCCCCCccc-ccCCCCCcc-cccccCCCcccccccCCCCCc--h---------------h-----------
Q 037143           16 IQVLNELVDHRNPDQYKY-VYNGQDPRI-STFGQDVNAFTARETPLDPST--Y---------------K-----------   65 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~-~~~G~TPLh-~A~~~~~~~~~~v~~Ll~~~~--~---------------~-----------   65 (382)
                      .+.++.++++.++.+.+. |..|+|||| .|+  .+++.+++++|++.++  .               .           
T Consensus        30 ~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~--~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~  107 (743)
T TIGR00870        30 LASVYRDLEEPKKLNINCPDRLGRSALFVAAI--ENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAA  107 (743)
T ss_pred             HHHHHHHhccccccCCCCcCccchhHHHHHHH--hcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhc
Confidence            456666666544444443 334777777 555  5566666666666552  0               0           


Q ss_pred             -----------hhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCcccc--------------CCCCCcHHHHHHHcC
Q 037143           66 -----------KKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDL--------------DPAEKNILLLAIENR  120 (382)
Q Consensus        66 -----------~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~--------------d~~G~t~Lh~A~~~g  120 (382)
                                 ......+..|.||||+||.+|+.++|+.|++++++. +.+              ...|+||||.|+..|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~  186 (743)
T TIGR00870       108 FRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLG  186 (743)
T ss_pred             ccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhC
Confidence                       000011235899999999999999999999988763 322              136899999999999


Q ss_pred             CHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhc-cccccccccCCCCC
Q 037143          121 RTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLM-PRHFFTRYNDDGKT  199 (382)
Q Consensus       121 ~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~N~~G~T  199 (382)
                      +.+++++|++.|    +++|.+|..|+||||+|+..+......   ..+..+..-...+...... +....+.+|++|.|
T Consensus       187 ~~~iv~lLl~~g----adin~~d~~g~T~Lh~A~~~~~~~~~~---~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~T  259 (743)
T TIGR00870       187 SPSIVALLSEDP----ADILTADSLGNTLLHLLVMENEFKAEY---EELSCQMYNFALSLLDKLRDSKELEVILNHQGLT  259 (743)
T ss_pred             CHHHHHHHhcCC----cchhhHhhhhhHHHHHHHhhhhhhHHH---HHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCC
Confidence            999999999988    799999999999999999876422100   0000000000000111111 11223678999999


Q ss_pred             ccccchhh
Q 037143          200 PDEVFTES  207 (382)
Q Consensus       200 pldla~~~  207 (382)
                      |+++|.+.
T Consensus       260 PL~~A~~~  267 (743)
T TIGR00870       260 PLKLAAKE  267 (743)
T ss_pred             chhhhhhc
Confidence            99998764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.74  E-value=6.5e-18  Score=146.19  Aligned_cols=119  Identities=22%  Similarity=0.247  Sum_probs=96.4

Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhC-----CCCccccCCCCCcHHHHHHHcCC----HHHHHHHHhCCCcccccc
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTF-----PVAMWDLDPAEKNILLLAIENRR----TSVYNLLLSRKALGQTIF  139 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~-----~~~~~~~d~~G~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~~  139 (382)
                      +.+|..|.||||+||+.|+.++++.|+...     +..++.+|..|+||||+|+..|+    .+++++|++.+    +++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g----adi   90 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG----ADI   90 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC----CCC
Confidence            445778999999999999999999986432     23367889999999999999998    58999999998    789


Q ss_pred             ccccC-CCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          140 WQVDN-QGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       140 ~~~D~-~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                      |.+|. +|+||||+|+..++.++++.               .+.  .++.+++.+|.+|+||+++|....
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~---------------Ll~--~~g~~~~~~n~~g~tpL~~A~~~~  143 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEW---------------LCC--QPGIDLHFCNADNKSPFELAIDNE  143 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHH---------------HHh--CCCCCCCcCCCCCCCHHHHHHHCC
Confidence            99985 99999999999998665421               111  123456789999999999988764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.74  E-value=4.3e-18  Score=146.87  Aligned_cols=120  Identities=12%  Similarity=0.022  Sum_probs=101.6

Q ss_pred             HHHHHHHHcCCCCCCcc-cccCCCCCcccccccCCCcccc---cccCCCCCchhhhhhhcc-CCCCcHHHHHHHcCcHHH
Q 037143           16 IQVLNELVDHRNPDQYK-YVYNGQDPRISTFGQDVNAFTA---RETPLDPSTYKKKNARRS-RRKETPILVAAKMGVTEM   90 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~-~~~~G~TPLh~A~~~~~~~~~~---v~~Ll~~~~~~~~~~~~~-~~g~tpLh~Aa~~g~~~~   90 (382)
                      .+++++|+++  +...+ .|..|+||||+|+  ..++.+.   +++|++.|++.   +.++ ..|.||||+|+..|+.++
T Consensus        37 ~~~~~~l~~~--g~~~~~~d~~g~t~Lh~Aa--~~g~~~~~~~i~~Ll~~Gadi---n~~d~~~g~TpLh~A~~~g~~~i  109 (166)
T PHA02743         37 MEVAPFISGD--GHLLHRYDHHGRQCTHMVA--WYDRANAVMKIELLVNMGADI---NARELGTGNTLLHIAASTKNYEL  109 (166)
T ss_pred             HHHHHHHhhc--chhhhccCCCCCcHHHHHH--HhCccCHHHHHHHHHHcCCCC---CCCCCCCCCcHHHHHHHhCCHHH
Confidence            4778888887  55554 4667999999999  5566554   78999999876   6666 479999999999999999


Q ss_pred             HHHHhh-hCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCC
Q 037143           91 VKKILD-TFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGN  147 (382)
Q Consensus        91 v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~  147 (382)
                      +++|++ .+.+ ++.+|.+|+||||+|+..++.+++++|++.+    ++++.+|..|.
T Consensus       110 v~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g----a~~~~~~~~~~  162 (166)
T PHA02743        110 AEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANG----AVCDDPLSIGL  162 (166)
T ss_pred             HHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcccCCc
Confidence            999996 5655 6778999999999999999999999999998    78999888775

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.74  E-value=2.8e-18  Score=180.32  Aligned_cols=162  Identities=17%  Similarity=0.116  Sum_probs=137.1

Q ss_pred             HHHHHHHHcCCCCCCccccc-CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYKYVY-NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~~~-~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      .++...+++.  +.+.+.-. .|.||||.|+  +.|+.+++++|++.++..   +...+.|.|++|.|...+...+++.+
T Consensus       454 ~~~~~~l~~~--g~~~n~~s~~G~T~Lhlaa--q~Gh~~~~~llle~~~~~---~~~~~~~l~~lhla~~~~~v~~~~~l  526 (1143)
T KOG4177|consen  454 LQIARLLLQY--GADPNAVSKQGFTPLHLAA--QEGHTEVVQLLLEGGAND---NLDAKKGLTPLHLAADEDTVKVAKIL  526 (1143)
T ss_pred             hhhhhhHhhc--CCCcchhccccCcchhhhh--ccCCchHHHHhhhcCCcc---CccchhccchhhhhhhhhhHHHHHHH
Confidence            4556666666  66666544 4999999999  889999999999988554   56667899999999999999999999


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHH
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWE  174 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~  174 (382)
                      ++++.+ ++.++..|.||||.||.+|+.++|++|+++|    ++++.+|+.|.||||.||..|+.+++.+          
T Consensus       527 ~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g----Adv~ak~~~G~TPLH~Aa~~G~~~i~~L----------  591 (1143)
T KOG4177|consen  527 LEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG----ADVNAKDKLGYTPLHQAAQQGHNDIAEL----------  591 (1143)
T ss_pred             hhcCCc-eehhcccccchHHHHHhcCCchHHHHhhhCC----ccccccCCCCCChhhHHHHcChHHHHHH----------
Confidence            999887 6778999999999999999999999999999    8999999999999999999998766422          


Q ss_pred             HHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          175 IKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       175 ~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                           .++.   +..+|..|.+|.||+++|...
T Consensus       592 -----Llk~---GA~vna~d~~g~TpL~iA~~l  616 (1143)
T KOG4177|consen  592 -----LLKH---GASVNAADLDGFTPLHIAVRL  616 (1143)
T ss_pred             -----HHHc---CCCCCcccccCcchhHHHHHh
Confidence                 2333   334679999999999998765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.74  E-value=2.4e-18  Score=183.30  Aligned_cols=145  Identities=17%  Similarity=0.097  Sum_probs=121.9

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcH
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI  112 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~  112 (382)
                      .+.++.+|||.||  ..|+.++++.|++.|.+.   +..|.+|+||||+||..|+.++++.|++++.+ ++.+|.+|+||
T Consensus       521 ~~~~~~~~L~~Aa--~~g~~~~l~~Ll~~G~d~---n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~Tp  594 (823)
T PLN03192        521 DDPNMASNLLTVA--STGNAALLEELLKAKLDP---DIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTA  594 (823)
T ss_pred             CCccchhHHHHHH--HcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCH
Confidence            3445789999999  679999999999999876   78899999999999999999999999998877 78899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhcccccccc
Q 037143          113 LLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTR  192 (382)
Q Consensus       113 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~  192 (382)
                      ||+|+..|+.+++++|++.+.    ..+  +..|.+|||.|+..|+.++++.               .++.   +.+++.
T Consensus       595 L~~A~~~g~~~iv~~L~~~~~----~~~--~~~~~~~L~~Aa~~g~~~~v~~---------------Ll~~---Gadin~  650 (823)
T PLN03192        595 LWNAISAKHHKIFRILYHFAS----ISD--PHAAGDLLCTAAKRNDLTAMKE---------------LLKQ---GLNVDS  650 (823)
T ss_pred             HHHHHHhCCHHHHHHHHhcCc----ccC--cccCchHHHHHHHhCCHHHHHH---------------HHHC---CCCCCC
Confidence            999999999999999998762    222  3468899999999999665431               1222   234678


Q ss_pred             ccCCCCCccccchhh
Q 037143          193 YNDDGKTPDEVFTES  207 (382)
Q Consensus       193 ~N~~G~Tpldla~~~  207 (382)
                      +|++|.||+++|..+
T Consensus       651 ~d~~G~TpLh~A~~~  665 (823)
T PLN03192        651 EDHQGATALQVAMAE  665 (823)
T ss_pred             CCCCCCCHHHHHHHC
Confidence            999999999998765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.74  E-value=2e-18  Score=174.89  Aligned_cols=140  Identities=11%  Similarity=0.035  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCc----ccccccCCCCCchhhhhhhccCCCCcHHHH---HHHcC
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNA----FTARETPLDPSTYKKKNARRSRRKETPILV---AAKMG   86 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~----~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~---Aa~~g   86 (382)
                      -..|++++|+++  |++.+.+..|+||||+|+  ..++    .+++++|+++|++. ..+.+|..|.||||.   |...+
T Consensus       357 v~ieIvelLIs~--GAdIN~k~~G~TpLH~Aa--~~nnn~i~~eIvelLIs~Ga~~-dIN~kd~~G~T~Lh~~i~a~~~n  431 (672)
T PHA02730        357 VSIPILRCMLDN--GATMDKTTDNNYPLHDYF--VNNNNIVDVNVVRFIVENNGHM-AINHVSNNGRLCMYGLILSRFNN  431 (672)
T ss_pred             CcHHHHHHHHHC--CCCCCcCCCCCcHHHHHH--HHcCCcchHHHHHHHHHcCCCc-cccccccCCCchHhHHHHHHhcc
Confidence            458999999999  888887767999999998  4443    79999999988631 126678889999994   33332


Q ss_pred             ---------cHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccC-CCCCHHHHHHhh
Q 037143           87 ---------VTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDN-QGNSALHLAAKY  156 (382)
Q Consensus        87 ---------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~-~G~TpLH~A~~~  156 (382)
                               ..+++++|++++++ ++.+|..|+||||+|+..++.+++++|++.|    +++|.+|. .|+||||.|+..
T Consensus       432 ~~~~~~e~~~~~ivk~LIs~GAD-INakD~~G~TPLh~Aa~~~~~eive~LI~~G----AdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        432 CGYHCYETILIDVFDILSKYMDD-IDMIDNENKTLLYYAVDVNNIQFARRLLEYG----ASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             ccccccchhHHHHHHHHHhcccc-hhccCCCCCCHHHHHHHhCCHHHHHHHHHCC----CCCCCCCCcCCcCHHHHHHHh
Confidence                     23579999999888 7889999999999999999999999999999    89999997 599999999974


Q ss_pred             --CCCCccc
Q 037143          157 --GDHLPLL  163 (382)
Q Consensus       157 --g~~~~~~  163 (382)
                        ++.+++.
T Consensus       507 ~~~~~eIv~  515 (672)
T PHA02730        507 RENKTKLVD  515 (672)
T ss_pred             hcCcHHHHH
Confidence              4555543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.71  E-value=1.3e-17  Score=143.19  Aligned_cols=168  Identities=17%  Similarity=0.054  Sum_probs=135.6

Q ss_pred             HHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCch----------------------------hhhh
Q 037143           17 QVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTY----------------------------KKKN   68 (382)
Q Consensus        17 eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~----------------------------~~~~   68 (382)
                      +++..+..-+|....+.|.+||+.+|.++  ..++.+.+..++.+++.                            ..+.
T Consensus        76 d~~v~s~~~~~~~~~~t~p~g~~~~~v~a--p~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~V  153 (296)
T KOG0502|consen   76 DVAVQSAQLDPDAIDETDPEGWSALLVAA--PCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKV  153 (296)
T ss_pred             HHHHHhhccCCCCCCCCCchhhhhhhhcC--CCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccc
Confidence            45666666677888888888999999998  55677777777766544                            1123


Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCC
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNS  148 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  148 (382)
                      |..|+.|.|||.||+.+|++++|++|++.+++ +...-+...++|.+|+..|..+||++|+.++    .++|.-|-+|-|
T Consensus       154 N~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-p~~lgk~resALsLAt~ggytdiV~lLL~r~----vdVNvyDwNGgT  228 (296)
T KOG0502|consen  154 NACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-PDALGKYRESALSLATRGGYTDIVELLLTRE----VDVNVYDWNGGT  228 (296)
T ss_pred             cCccccCchHhHHHHhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhHHhcCChHHHHHHHHhcC----CCcceeccCCCc
Confidence            67788999999999999999999999999887 6677788889999999999999999999998    799999999999


Q ss_pred             HHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhhhH
Q 037143          149 ALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHR  209 (382)
Q Consensus       149 pLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~~  209 (382)
                      ||-+|++.++.++++.               .   ...+.+++..+..|.+++|+|.....
T Consensus       229 pLlyAvrgnhvkcve~---------------L---l~sGAd~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  229 PLLYAVRGNHVKCVES---------------L---LNSGADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             eeeeeecCChHHHHHH---------------H---HhcCCCcccccccCCcHHHHHHHhhh
Confidence            9999999888665421               1   12334567888999999999876543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.71  E-value=1e-17  Score=138.72  Aligned_cols=135  Identities=16%  Similarity=0.085  Sum_probs=116.8

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      -++.|+.||+.++...+..|.+|.||||-|+  .+|+.++++.|+..+++.   +.++..|+||||.||+..+.+++..|
T Consensus        75 rl~eV~~lL~e~an~vNtrD~D~YTpLHRAa--Yn~h~div~~ll~~gAn~---~a~T~~GWTPLhSAckWnN~~va~~L  149 (228)
T KOG0512|consen   75 RLTEVQRLLSEKANHVNTRDEDEYTPLHRAA--YNGHLDIVHELLLSGANK---EAKTNEGWTPLHSACKWNNFEVAGRL  149 (228)
T ss_pred             cHHHHHHHHHhccccccccccccccHHHHHH--hcCchHHHHHHHHccCCc---ccccccCccchhhhhcccchhHHHHH
Confidence            3567899999888888888889999999999  789999999999998887   78888999999999999999999999


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCH-HHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRT-SVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                      |+++++ ++.......||||+||...+. ..+++|+....   ...-.++..|.||+.+|-+.+-
T Consensus       150 LqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry---i~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  150 LQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY---IHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccc---cChhhhcCccchHHHHHHHhhh
Confidence            999998 777888889999999988765 45666666542   5667788899999999987764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.70  E-value=1.1e-17  Score=169.58  Aligned_cols=181  Identities=11%  Similarity=0.021  Sum_probs=131.7

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCC---cccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC--cHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVN---AFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG--VTE   89 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~   89 (382)
                      +...+++.+++..+.+...|..|+||||+|+  ..+   +.+++++|+++|++.   +.+|..|+||||+|+..|  +.|
T Consensus        19 ~~~~~~~~~~~~~~in~~kd~~G~TaLh~A~--~~~~~~~~eivklLLs~GAdi---n~kD~~G~TPLh~Aa~~~~~~~e   93 (672)
T PHA02730         19 TYKKIKLEIETCHNLSKHIDRRGNNALHCYV--SNKCDTDIKIVRLLLSRGVER---LCRNNEGLTPLGVYSKRKYVKSQ   93 (672)
T ss_pred             hHHHHHHHHHHhcchhhhcCCCCCcHHHHHH--HcCCcCcHHHHHHHHhCCCCC---cccCCCCCChHHHHHHcCCCcHH
Confidence            4556777888743444455667999999999  444   589999999999987   788889999999999977  799


Q ss_pred             HHHHHhhhCCCC-ccccCCCCCcHHHHHHH--cCCHHHHHHHHhCCCcccccccccc----C-CCCCHHHHHHhhCCCCc
Q 037143           90 MVKKILDTFPVA-MWDLDPAEKNILLLAIE--NRRTSVYNLLLSRKALGQTIFWQVD----N-QGNSALHLAAKYGDHLP  161 (382)
Q Consensus        90 ~v~~Ll~~~~~~-~~~~d~~G~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~D----~-~G~TpLH~A~~~g~~~~  161 (382)
                      ++++|++.+.+. .+..|..+.+|||.++.  +++.+++++|++.+.   .+++...    + .|-+|+++|+..++.++
T Consensus        94 Iv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~---~~~~~~~~~~~~~~~~~~~yl~~~~~~~eI  170 (672)
T PHA02730         94 IVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKR---IRPSKNTNYYIHCLGLVDIYVTTPNPRPEV  170 (672)
T ss_pred             HHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcC---CChhhhhhhhccccchhhhhHhcCCCchHH
Confidence            999999985431 45567779999999988  889999999997442   4555443    2 78899999999999888


Q ss_pred             ccc---Ccchhh------------hHHHHHH-------------HHHHHhhc-cccccccccCCCCCcccc
Q 037143          162 LLF---PGAALQ------------VQWEIKW-------------FQHVKKLM-PRHFFTRYNDDGKTPDEV  203 (382)
Q Consensus       162 ~~~---~~~~l~------------~~~~~~~-------------~~~v~~~~-~~~~~~~~N~~G~Tpldl  203 (382)
                      +++   .|+...            +...+.|             .+.++... .+.+++.+|++|+|||+.
T Consensus       171 vklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~  241 (672)
T PHA02730        171 LLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQY  241 (672)
T ss_pred             HHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            764   233221            0101112             22222222 344678999999999985

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.70  E-value=1.8e-17  Score=158.96  Aligned_cols=163  Identities=18%  Similarity=0.144  Sum_probs=123.1

Q ss_pred             HHHHHHHHcCCCCCCcc-cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYK-YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~-~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      .+-+..|+..  +...+ .+.+|.|+||-++  ...+.++|++|++.++++   |+.|..|+||||.|+..||..++++|
T Consensus        53 ~~ev~~ll~~--ga~~~~~n~DglTalhq~~--id~~~e~v~~l~e~ga~V---n~~d~e~wtPlhaaascg~~~i~~~l  125 (527)
T KOG0505|consen   53 LEEVRKLLNR--GASPNLCNVDGLTALHQAC--IDDNLEMVKFLVENGANV---NAQDNEGWTPLHAAASCGYLNIVEYL  125 (527)
T ss_pred             HHHHHHHhcc--CCCccccCCccchhHHHHH--hcccHHHHHHHHHhcCCc---cccccccCCcchhhcccccHHHHHHH
Confidence            4556667766  33333 3445888888887  567778888888887776   77777788888888888888888887


Q ss_pred             hhhCCC----------------------------------------------------------CccccCCCCCcHHHHH
Q 037143           95 LDTFPV----------------------------------------------------------AMWDLDPAEKNILLLA  116 (382)
Q Consensus        95 l~~~~~----------------------------------------------------------~~~~~d~~G~t~Lh~A  116 (382)
                      ++.+++                                                          .....+..|.|.||.|
T Consensus       126 i~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvA  205 (527)
T KOG0505|consen  126 IQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVA  205 (527)
T ss_pred             HHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHH
Confidence            776532                                                          1233455699999999


Q ss_pred             HHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCC
Q 037143          117 IENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDD  196 (382)
Q Consensus       117 ~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~  196 (382)
                      +.+|..++.++|++.+    .+++.+|.+|+||||.|+..|+.++..+               .++   .....+.+++.
T Consensus       206 aa~Gy~e~~~lLl~ag----~~~~~~D~dgWtPlHAAA~Wg~~~~~el---------------L~~---~ga~~d~~t~~  263 (527)
T KOG0505|consen  206 AANGYTEVAALLLQAG----YSVNIKDYDGWTPLHAAAHWGQEDACEL---------------LVE---HGADMDAKTKM  263 (527)
T ss_pred             HhhhHHHHHHHHHHhc----cCcccccccCCCcccHHHHhhhHhHHHH---------------HHH---hhcccchhhhc
Confidence            9999999999999999    7999999999999999999998665321               121   23345689999


Q ss_pred             CCCccccchhh
Q 037143          197 GKTPDEVFTES  207 (382)
Q Consensus       197 G~Tpldla~~~  207 (382)
                      |+||+|++.+.
T Consensus       264 g~~p~dv~dee  274 (527)
T KOG0505|consen  264 GETPLDVADEE  274 (527)
T ss_pred             CCCCccchhhh
Confidence            99999999773

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.70  E-value=1e-17  Score=149.11  Aligned_cols=116  Identities=16%  Similarity=0.109  Sum_probs=104.9

Q ss_pred             CCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCC
Q 037143           29 DQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDP  107 (382)
Q Consensus        29 ~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~  107 (382)
                      .+.+. |+.|.+|||+|+  +.|+..+++.|+..|+..   |..|....||||+|+.+||.++|+.|++..+| ++..+.
T Consensus        25 hdln~gddhgfsplhwaa--kegh~aivemll~rgarv---n~tnmgddtplhlaaahghrdivqkll~~kad-vnavne   98 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAA--KEGHVAIVEMLLSRGARV---NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD-VNAVNE   98 (448)
T ss_pred             cccccccccCcchhhhhh--hcccHHHHHHHHhccccc---ccccCCCCcchhhhhhcccHHHHHHHHHHhcc-cchhhc
Confidence            34444 556999999999  889999999999999887   66677778999999999999999999999888 788999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHH
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAA  154 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~  154 (382)
                      .|+|||||||..|...+.+-|+..|    +.++.-+++|.|||.-|-
T Consensus        99 hgntplhyacfwgydqiaedli~~g----a~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   99 HGNTPLHYACFWGYDQIAEDLISCG----AAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             cCCCchhhhhhhcHHHHHHHHHhcc----ceeeecccCCCCchhhhc
Confidence            9999999999999999999999999    799999999999998763

>PHA02792 ankyrin-like protein; Provisional

Probab=99.68  E-value=1.5e-16  Score=159.68  Aligned_cols=114  Identities=11%  Similarity=0.056  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHcCCCCCCcccccC-CCCCcccccccCCCcccccccCCCCCchhh--------------------------
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYN-GQDPRISTFGQDVNAFTARETPLDPSTYKK--------------------------   66 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~-G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~--------------------------   66 (382)
                      ..+|+|++|+++  |++.+..++ |+||+|+|+. .+++.+++++|++.|++..                          
T Consensus        83 ~~lElvk~LI~~--GAdvN~~~n~~~~~l~ya~~-~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~  159 (631)
T PHA02792         83 IDIELLKLLISK--GLEINSIKNGINIVEKYATT-SNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDEL  159 (631)
T ss_pred             ccHHHHHHHHHc--CCCcccccCCCCcceeEeec-CCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhc
Confidence            468999999999  888876554 8999999974 5799999999999997621                          


Q ss_pred             -------hhhhccCCCCcHHHHHHHcC-------cHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHh
Q 037143           67 -------KNARRSRRKETPILVAAKMG-------VTEMVKKILDTFPVAMWDLDPAEKNILLLAIENR--RTSVYNLLLS  130 (382)
Q Consensus        67 -------~~~~~~~~g~tpLh~Aa~~g-------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~  130 (382)
                             ..+.+|+.|.||||+|+..+       +.|+++.|++++++ ++..|.+|.||||+|+.+.  +.|++++|++
T Consensus       160 ~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~-~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~  238 (631)
T PHA02792        160 DDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE-MRYYTYREHTTLYYYVDKCDIKREIFDALFD  238 (631)
T ss_pred             cccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC-cCccCCCCChHHHHHHHcccchHHHHHHHHh
Confidence                   11345667999999999999       89999999999988 6678999999999999998  7888888876


Q ss_pred             C
Q 037143          131 R  131 (382)
Q Consensus       131 ~  131 (382)
                      .
T Consensus       239 ~  239 (631)
T PHA02792        239 S  239 (631)
T ss_pred             c
Confidence            4

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.65  E-value=1.7e-16  Score=148.04  Aligned_cols=122  Identities=11%  Similarity=0.063  Sum_probs=103.7

Q ss_pred             HHHHHHHHHcCCCCCCccc-----ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhc-cCCCCcHHHHHHHcCcH
Q 037143           15 AIQVLNELVDHRNPDQYKY-----VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARR-SRRKETPILVAAKMGVT   88 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-----~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~g~tpLh~Aa~~g~~   88 (382)
                      ..+++++|+++  |++.+.     +..|.||||+|+  ..++.+++++|+++|++.   +.. +..|.||||.|+..|+.
T Consensus        45 ~~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa--~~~~~eivklLL~~GADV---N~~~~~~g~TpLh~Aa~~~~~  117 (300)
T PHA02884         45 YTDIIDAILKL--GADPEAPFPLSENSKTNPLIYAI--DCDNDDAAKLLIRYGADV---NRYAEEAKITPLYISVLHGCL  117 (300)
T ss_pred             CHHHHHHHHHC--CCCccccCcccCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCc---CcccCCCCCCHHHHHHHcCCH
Confidence            47899999999  666664     246999999999  789999999999999887   654 45799999999999999


Q ss_pred             HHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHH
Q 037143           89 EMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLA  153 (382)
Q Consensus        89 ~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A  153 (382)
                      ++++.|++.+++ ++.+|..|.||||+|++.++.+++..+...         ..|..|.+|++.+
T Consensus       118 eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  172 (300)
T PHA02884        118 KCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICDN---------EISNFYKHPKKIL  172 (300)
T ss_pred             HHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcCC---------cccccccChhhhh
Confidence            999999999887 678899999999999999999887665422         2577888999975

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.65  E-value=1.4e-16  Score=146.00  Aligned_cols=140  Identities=21%  Similarity=0.192  Sum_probs=116.3

Q ss_pred             HHHHHHHHHcCCCCCCcccccC-CCCCccccccc---CCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYN-GQDPRISTFGQ---DVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEM   90 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~-G~TPLh~A~~~---~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~   90 (382)
                      ..++|+.||+.+ -.+.+..++ |.||.++|+..   ...+.++|+.|.+-|.-.   -...+.|+|+|++|+.+|+.++
T Consensus       280 NF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN---aKAsQ~gQTALMLAVSHGr~d~  355 (452)
T KOG0514|consen  280 NFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN---AKASQHGQTALMLAVSHGRVDM  355 (452)
T ss_pred             chHHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc---hhhhhhcchhhhhhhhcCcHHH
Confidence            468999999874 334444444 99999998842   345777888887766322   1223469999999999999999


Q ss_pred             HHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           91 VKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        91 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |+.||.+++| +|.+|.+|.|+|+.||++||.||+++|+....   .++...|.+|.|+|.+|-..||.+|.
T Consensus       356 vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~---cd~sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  356 VKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS---CDISLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             HHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCc---ccceeecCCCchhhhhHHhcCchHHH
Confidence            9999998888 89999999999999999999999999999873   79999999999999999999998774

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.63  E-value=3.2e-16  Score=155.39  Aligned_cols=187  Identities=20%  Similarity=0.086  Sum_probs=138.6

Q ss_pred             HHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      .+++++|+++  .+..+. |..|.+|||+|+  ..|+.+++++|+.++...   |.++..|.||||.|+.+||.+++.+|
T Consensus        62 ~~is~llle~--ea~ldl~d~kg~~plhlaa--w~g~~e~vkmll~q~d~~---na~~~e~~tplhlaaqhgh~dvv~~L  134 (854)
T KOG0507|consen   62 NQISKLLLDY--EALLDLCDTKGILPLHLAA--WNGNLEIVKMLLLQTDIL---NAVNIENETPLHLAAQHGHLEVVFYL  134 (854)
T ss_pred             hHHHHHHhcc--hhhhhhhhccCcceEEehh--hcCcchHHHHHHhcccCC---CcccccCcCccchhhhhcchHHHHHH
Confidence            5789999998  555544 456999999999  789999999999987444   88888999999999999999999999


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCc----cccccccccCCCCCHHHHHHhhCCCCcccc------
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKAL----GQTIFWQVDNQGNSALHLAAKYGDHLPLLF------  164 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~----~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~------  164 (382)
                      ++++.+ .-.+|+++.|+|-+|++.|+.++++.|++....    ....-..++-.+-+|||+|+++|+.+++..      
T Consensus       135 l~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~  213 (854)
T KOG0507|consen  135 LKKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF  213 (854)
T ss_pred             HhcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC
Confidence            999887 566899999999999999999999999886311    011234567788999999999999877542      


Q ss_pred             -------CcchhhhHHHHHHHHHHHh-hccccccccccCCCCCccccchhhhHH
Q 037143          165 -------PGAALQVQWEIKWFQHVKK-LMPRHFFTRYNDDGKTPDEVFTESHRD  210 (382)
Q Consensus       165 -------~~~~l~~~~~~~~~~~v~~-~~~~~~~~~~N~~G~Tpldla~~~~~~  210 (382)
                             .|.+++-.......+.+.- .....+..++|.+|+|+||+..+...+
T Consensus       214 din~~t~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~  267 (854)
T KOG0507|consen  214 DINYTTEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQEN  267 (854)
T ss_pred             CcccccccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchh
Confidence                   2233322111111111111 111233568999999999997765443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.61  E-value=1.9e-14  Score=152.26  Aligned_cols=125  Identities=19%  Similarity=0.195  Sum_probs=98.9

Q ss_pred             CCCCCcccccccCCCcccccccCCCCCchhhhhh-----------hccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccc
Q 037143           36 NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNA-----------RRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWD  104 (382)
Q Consensus        36 ~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~-----------~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~  104 (382)
                      .|.||||+|+  ..++.+++++|++.|++.....           .....|+||||.|+..|+.+++++|++.+++ ++.
T Consensus       127 ~G~TpLhlAa--~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~  203 (743)
T TIGR00870       127 PGITALHLAA--HRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILT  203 (743)
T ss_pred             CCCcHHHHHH--HhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhh
Confidence            4999999999  7899999999999998762110           0113589999999999999999999998776 788


Q ss_pred             cCCCCCcHHHHHHHcC---------CHHHHHHHHhCCCc---cccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          105 LDPAEKNILLLAIENR---------RTSVYNLLLSRKAL---GQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       105 ~d~~G~t~Lh~A~~~g---------~~~iv~~Ll~~~~~---~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +|..|+||||+|+..+         ...+.+++++.+..   .....+.+|.+|.||||+|+..|+.++++
T Consensus       204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~  274 (743)
T TIGR00870       204 ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFR  274 (743)
T ss_pred             HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHH
Confidence            9999999999999987         23455666655421   01122678999999999999999988764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.61  E-value=7.5e-16  Score=124.66  Aligned_cols=118  Identities=26%  Similarity=0.249  Sum_probs=105.2

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      +.+|+||||+|+  ..++.++++.|++.+.+.   +..+..|.||||.|+..++.++++.|++.++. .+..+..|.||+
T Consensus         4 ~~~g~t~l~~a~--~~~~~~~i~~li~~~~~~---~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l   77 (126)
T cd00204           4 DEDGRTPLHLAA--SNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPL   77 (126)
T ss_pred             CcCCCCHHHHHH--HcCcHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHH
Confidence            456999999999  779999999999988765   66778899999999999999999999998865 566788999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCc
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLP  161 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~  161 (382)
                      |+|++.++.+++++|++.+    .+.+..|..|.||+|.|...++.++
T Consensus        78 ~~a~~~~~~~~~~~L~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~  121 (126)
T cd00204          78 HLAARNGNLDVVKLLLKHG----ADVNARDKDGRTPLHLAAKNGHLEV  121 (126)
T ss_pred             HHHHHcCcHHHHHHHHHcC----CCCcccCCCCCCHHHHHHhcCCHHH
Confidence            9999999999999999988    6788899999999999998876443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=3.3e-16  Score=120.49  Aligned_cols=89  Identities=19%  Similarity=0.096  Sum_probs=70.2

Q ss_pred             cccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcC
Q 037143           41 RISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENR  120 (382)
Q Consensus        41 Lh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g  120 (382)
                      ||+|+  +.++.++++.|++.+.+.   +   . |+||||+||..|+.+++++|++.+++ ++.+|.+|+||||+|+.+|
T Consensus         1 L~~A~--~~~~~~~~~~ll~~~~~~---~---~-~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAA--QNGNLEILKFLLEKGADI---N---L-GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHH--HTTTHHHHHHHHHTTSTT---T---S-SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTT
T ss_pred             CHHHH--HcCCHHHHHHHHHCcCCC---C---C-CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcC
Confidence            67888  778888888888876543   1   1 78899999999999999998888776 6777888889999999988


Q ss_pred             CHHHHHHHHhCCCcccccccccc
Q 037143          121 RTSVYNLLLSRKALGQTIFWQVD  143 (382)
Q Consensus       121 ~~~iv~~Ll~~~~~~~~~~~~~D  143 (382)
                      +.+++++|++.|    ++++.+|
T Consensus        71 ~~~~~~~Ll~~g----~~~~~~n   89 (89)
T PF12796_consen   71 NLEIVKLLLEHG----ADVNIRN   89 (89)
T ss_dssp             HHHHHHHHHHTT----T-TTSS-
T ss_pred             CHHHHHHHHHcC----CCCCCcC
Confidence            899999888887    6777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.61  E-value=1.2e-15  Score=129.81  Aligned_cols=94  Identities=15%  Similarity=0.057  Sum_probs=82.0

Q ss_pred             cccCCCCCcccccccCCCcc---cccccCCCCCchhhhhhhcc-CCCCcHHHHHHHcCcHHHHHHHhhh-CCCCccccCC
Q 037143           33 YVYNGQDPRISTFGQDVNAF---TARETPLDPSTYKKKNARRS-RRKETPILVAAKMGVTEMVKKILDT-FPVAMWDLDP  107 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~---~~v~~Ll~~~~~~~~~~~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~  107 (382)
                      .|..|+||||+|+  ..++.   +++++|++.+++.   +.++ ..|+||||+|+..|+.+++++|++. +.+ ++.+|.
T Consensus        51 ~d~~g~t~Lh~a~--~~~~~~~~e~v~~Ll~~gadi---n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~  124 (154)
T PHA02736         51 YNRHGKQCVHIVS--NPDKADPQEKLKLLMEWGADI---NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNY  124 (154)
T ss_pred             hcCCCCEEEEeec--ccCchhHHHHHHHHHHcCCCc---cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccC
Confidence            4667999999999  56665   4678899998876   6666 4899999999999999999999975 555 788899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      .|+||||+|+..|+.+++++|++.|
T Consensus       125 ~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736        125 AFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999999988

>PHA02792 ankyrin-like protein; Provisional

Probab=99.58  E-value=2.6e-15  Score=150.97  Aligned_cols=129  Identities=13%  Similarity=0.163  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCC--CCcHHHHHHHcCcH---
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRR--KETPILVAAKMGVT---   88 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~--g~tpLh~Aa~~g~~---   88 (382)
                      -..+++++|+++  |++.. ...+..++|.|+  ..++.+++++|+++|++.   +.+|.+  |.||||.|+..+..   
T Consensus       319 v~ieiIK~LId~--Ga~~~-r~~~~n~~~~Aa--~~gn~eIVelLIs~GADI---N~kD~~g~~~TpLh~A~~n~~~~v~  390 (631)
T PHA02792        319 VYINVIKCMIDE--GATLY-RFKHINKYFQKF--DNRDPKVVEYILKNGNVV---VEDDDNIINIMPLFPTLSIHESDVL  390 (631)
T ss_pred             ccHHHHHHHHHC--CCccc-cCCcchHHHHHH--HcCCHHHHHHHHHcCCch---hhhcCCCCChhHHHHHHHhccHhHH
Confidence            457999999999  66654 233666788898  789999999999999887   555655  46999998876654   


Q ss_pred             HHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHh
Q 037143           89 EMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAK  155 (382)
Q Consensus        89 ~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~  155 (382)
                      ++++.|++.+++ ++.+|..|+||||+|+..++.+++++|+++|    +++|.+|..|+||||+|+.
T Consensus       391 ~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~G----ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        391 SILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNG----ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHH
Confidence            468888999888 7889999999999999999999999999999    7999999999999999986

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.57  E-value=1.8e-15  Score=145.33  Aligned_cols=132  Identities=17%  Similarity=0.100  Sum_probs=114.7

Q ss_pred             HHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhh--------------------------
Q 037143           16 IQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKN--------------------------   68 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~--------------------------   68 (382)
                      .+||++|+++  +++++. |++||||||.|+  .-++..++++|++.|++....                          
T Consensus        86 ~e~v~~l~e~--ga~Vn~~d~e~wtPlhaaa--scg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r  161 (527)
T KOG0505|consen   86 LEMVKFLVEN--GANVNAQDNEGWTPLHAAA--SCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMAR  161 (527)
T ss_pred             HHHHHHHHHh--cCCccccccccCCcchhhc--ccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHH
Confidence            5899999999  888876 555999999999  559999999999998872221                          


Q ss_pred             ------------------------------hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHH
Q 037143           69 ------------------------------ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIE  118 (382)
Q Consensus        69 ------------------------------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~  118 (382)
                                                    +.++..|.|.||.|+.+|..++.++|++.+.+ ++.+|.+|+||||.|+.
T Consensus       162 ~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~  240 (527)
T KOG0505|consen  162 QGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAH  240 (527)
T ss_pred             hcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHH
Confidence                                          11223699999999999999999999999877 78899999999999999


Q ss_pred             cCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhh
Q 037143          119 NRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKY  156 (382)
Q Consensus       119 ~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~  156 (382)
                      .|+.+++++|++++    ++++.+...|.||+.+|...
T Consensus       241 Wg~~~~~elL~~~g----a~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  241 WGQEDACELLVEHG----ADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             hhhHhHHHHHHHhh----cccchhhhcCCCCccchhhh
Confidence            99999999999999    79999999999999998753

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.56  E-value=2.7e-15  Score=148.88  Aligned_cols=177  Identities=16%  Similarity=0.112  Sum_probs=136.2

Q ss_pred             HHHHHHHHcCCCC-----------CCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHH
Q 037143           16 IQVLNELVDHRNP-----------DQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAA   83 (382)
Q Consensus        16 ~eiv~~Ll~~~~~-----------~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa   83 (382)
                      ++.+..||++..+           ...+. |.+|.|.||+|+  -+|+.+++++|++..+..   +..|.+|.+|||+|+
T Consensus        16 ~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~--Lng~~~is~llle~ea~l---dl~d~kg~~plhlaa   90 (854)
T KOG0507|consen   16 YDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAV--LNGQNQISKLLLDYEALL---DLCDTKGILPLHLAA   90 (854)
T ss_pred             HHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHH--hcCchHHHHHHhcchhhh---hhhhccCcceEEehh
Confidence            4567777765321           23333 445999999999  789999999999998765   455678999999999


Q ss_pred             HcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           84 KMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        84 ~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +.|+.|++++++... +..+..+..|.||||.|++.||.+++.+|++++    ++.-.+|+++.|+|.+|++.|..++++
T Consensus        91 w~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~----adp~i~nns~~t~ldlA~qfgr~~Vvq  165 (854)
T KOG0507|consen   91 WNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKN----ADPFIRNNSKETVLDLASRFGRAEVVQ  165 (854)
T ss_pred             hcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcC----CCccccCcccccHHHHHHHhhhhHHHH
Confidence            999999999999887 557888899999999999999999999999999    789999999999999999999988765


Q ss_pred             cCc-chhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh-hHHHHH
Q 037143          164 FPG-AALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES-HRDLVK  213 (382)
Q Consensus       164 ~~~-~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~-~~~l~~  213 (382)
                      +.- .++..+       ... ..+   -..+.-.+-+|+|+|.++ |.+.++
T Consensus       166 ~ll~~~~~~~-------~~~-~~~---~~~~~~~~~~plHlaakngh~~~~~  206 (854)
T KOG0507|consen  166 MLLQKKFPVQ-------SSL-RVG---DIKRPFPAIYPLHLAAKNGHVECMQ  206 (854)
T ss_pred             HHhhhccchh-------hcc-cCC---CCCCCCCCcCCcchhhhcchHHHHH
Confidence            310 011000       000 111   235667788999998654 555443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.53  E-value=3.6e-15  Score=149.67  Aligned_cols=152  Identities=14%  Similarity=0.031  Sum_probs=113.1

Q ss_pred             CCCCCccccccc-CCCcccccccCCCCCchhhhh--hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCcccc-------
Q 037143           36 NGQDPRISTFGQ-DVNAFTARETPLDPSTYKKKN--ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDL-------  105 (382)
Q Consensus        36 ~G~TPLh~A~~~-~~~~~~~v~~Ll~~~~~~~~~--~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-------  105 (382)
                      .|+|.||.|..+ ..++.++++.|++.-+..+.+  ..+...|+||||+|+.+.+.++|+.|++.++|. +.+       
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~  220 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFC  220 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccC
Confidence            399999999853 234557888888765542221  223457999999999999999999999998762 221       


Q ss_pred             --CC--------------CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchh
Q 037143          106 --DP--------------AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAAL  169 (382)
Q Consensus       106 --d~--------------~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l  169 (382)
                        |.              -|+.||-+||.-++.|++++|++++    +|+|++|.+|||.||..+..-..+.+..     
T Consensus       221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~g----Ad~~aqDS~GNTVLH~lVi~~~~~My~~-----  291 (782)
T KOG3676|consen  221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHG----ADPNAQDSNGNTVLHMLVIHFVTEMYDL-----  291 (782)
T ss_pred             cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcC----CCCCccccCCChHHHHHHHHHHHHHHHH-----
Confidence              11              2788999999999999999999998    8999999999999999987733222110     


Q ss_pred             hhHHHHHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          170 QVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       170 ~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                                .++.... .....+|++|.||+.+|.+..
T Consensus       292 ----------~L~~ga~-~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  292 ----------ALELGAN-ALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             ----------HHhcCCC-ccccccccCCCChHHHHHHhh
Confidence                      1111112 234689999999999998753

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.53  E-value=2.4e-14  Score=110.08  Aligned_cols=75  Identities=29%  Similarity=0.306  Sum_probs=67.4

Q ss_pred             HHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC
Q 037143           79 ILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus        79 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                      ||+||+.|+.++++.|++.+++. +   . |+||||+|+..|+.+++++|++.+    .+++.+|.+|+||||+|+..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~---~-~~~~l~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-N---L-GNTALHYAAENGNLEIVKLLLENG----ADINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-T---S-SSBHHHHHHHTTTHHHHHHHHHTT----TCTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-C---C-CCCHHHHHHHcCCHHHHHHHHHhc----ccccccCCCCCCHHHHHHHcCC
Confidence            79999999999999999977653 2   2 999999999999999999999998    7999999999999999999998


Q ss_pred             CCcc
Q 037143          159 HLPL  162 (382)
Q Consensus       159 ~~~~  162 (382)
                      .+++
T Consensus        72 ~~~~   75 (89)
T PF12796_consen   72 LEIV   75 (89)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.52  E-value=6.3e-13  Score=133.76  Aligned_cols=143  Identities=19%  Similarity=0.110  Sum_probs=119.7

Q ss_pred             HHHHHHHHHcCCCCCCccc--ccC--CCCCcccccccCCCcccccccCCCCCchhhhh---------hhcc---------
Q 037143           15 AIQVLNELVDHRNPDQYKY--VYN--GQDPRISTFGQDVNAFTARETPLDPSTYKKKN---------ARRS---------   72 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~--~~~--G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~---------~~~~---------   72 (382)
                      ..+++..|++.-|...++.  ++.  |.||||.|+  .+.+.+.|++|++.|+|+...         +++.         
T Consensus       158 ~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAI--v~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G  235 (782)
T KOG3676|consen  158 HNELARVLLEIFPKLINDIYTSEEYYGQSALHIAI--VNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTG  235 (782)
T ss_pred             HHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHH--HhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcc
Confidence            3478888888877666653  333  999999999  778999999999999985321         1111         


Q ss_pred             --CCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHH
Q 037143           73 --RRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSAL  150 (382)
Q Consensus        73 --~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  150 (382)
                        .-|..||-+||..++.|++++|+++++| ++.+|.+|+|.||..+..-..++..++++.|..  .....+|++|-|||
T Consensus       236 ~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPL  312 (782)
T KOG3676|consen  236 YFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPL  312 (782)
T ss_pred             eeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChH
Confidence              1478999999999999999999998888 788999999999999999999999999999942  44888999999999


Q ss_pred             HHHHhhCCCCcc
Q 037143          151 HLAAKYGDHLPL  162 (382)
Q Consensus       151 H~A~~~g~~~~~  162 (382)
                      -+|++.|..+++
T Consensus       313 tLAaklGk~emf  324 (782)
T KOG3676|consen  313 TLAAKLGKKEMF  324 (782)
T ss_pred             HHHHHhhhHHHH
Confidence            999999997765

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=4.8e-14  Score=125.97  Aligned_cols=126  Identities=21%  Similarity=0.090  Sum_probs=111.4

Q ss_pred             CCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCc-----HHHHHHHhhhCC--C
Q 037143           28 PDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGV-----TEMVKKILDTFP--V  100 (382)
Q Consensus        28 ~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~-----~~~v~~Ll~~~~--~  100 (382)
                      ......+..+.+|+|.++  ..+..+++++++..+.+.   +.+|..|.||||+|+..|+     .++++.|++.++  +
T Consensus        64 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~  138 (235)
T COG0666          64 RHLAARDLDGRLPLHSAA--SKGDDKIVKLLLASGADV---NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD  138 (235)
T ss_pred             cccccCCccccCHHHHHH--HcCcHHHHHHHHHcCCCc---ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC
Confidence            333344556999999998  678888888888888776   7888999999999999999     999999999999  6


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          101 AMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       101 ~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      ....+|.+|+||||+|+..|+.+++++|++.+    ++++.+|..|.|++|.|+..++.+++
T Consensus       139 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~  196 (235)
T COG0666         139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAG----ADPNSRNSYGVTALDPAAKNGRIELV  196 (235)
T ss_pred             CccccCCCCCchhHHHHHcCchHHHHHHHhcC----CCCcccccCCCcchhhhcccchHHHH
Confidence            67888999999999999999999999999998    78999999999999999999986554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.45  E-value=3.1e-13  Score=109.16  Aligned_cols=113  Identities=27%  Similarity=0.307  Sum_probs=94.1

Q ss_pred             cCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHH
Q 037143           72 SRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALH  151 (382)
Q Consensus        72 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH  151 (382)
                      |.+|.||||.|+..|+.++++.|++.+++. +..|..|.||||.|+..++.+++++|++.+    ..++..|..|.||+|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~----~~~~~~~~~~~~~l~   78 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG----ADVNARDKDGNTPLH   78 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHH
Confidence            567999999999999999999999998773 678899999999999999999999999998    578889999999999


Q ss_pred             HHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          152 LAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       152 ~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      .|+..++.++++                .+..  .....+..|..|+||++.+...
T Consensus        79 ~a~~~~~~~~~~----------------~L~~--~~~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          79 LAARNGNLDVVK----------------LLLK--HGADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             HHHHcCcHHHHH----------------HHHH--cCCCCcccCCCCCCHHHHHHhc
Confidence            999998854432                1111  1123457889999999998765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=7.5e-14  Score=97.51  Aligned_cols=56  Identities=25%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHH
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLA  153 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A  153 (382)
                      ||+.++..++.+|..|+||||+||..|+.+++++|++.+    ++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g----~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG----ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc----CCCCCCcCCCCCHHHhC
Confidence            456665557778888888888888888888888888776    78888888888888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=4.4e-13  Score=92.93  Aligned_cols=54  Identities=28%  Similarity=0.312  Sum_probs=43.7

Q ss_pred             CCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 037143           75 KETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLL  129 (382)
Q Consensus        75 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  129 (382)
                      |+||||+||+.|+.+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999998877 6777999999999999999999999885

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.34  E-value=1.4e-12  Score=135.70  Aligned_cols=110  Identities=18%  Similarity=0.026  Sum_probs=94.9

Q ss_pred             CcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHc
Q 037143           40 PRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIEN  119 (382)
Q Consensus        40 PLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~  119 (382)
                      +||.|+  ..|+.+.+++|++.+++.   +.+|..|+||||+||..|+.+++++|++.+++ ++.+|.+|+||||+|+..
T Consensus        85 ~L~~aa--~~G~~~~vk~LL~~Gadi---n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         85 ELCQLA--ASGDAVGARILLTGGADP---NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHH--HcCCHHHHHHHHHCCCCC---CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
Confidence            377788  679999999999998876   77889999999999999999999999999887 688999999999999999


Q ss_pred             CCHHHHHHHHhCCC---ccccccccccCCCCCHHHHHHh
Q 037143          120 RRTSVYNLLLSRKA---LGQTIFWQVDNQGNSALHLAAK  155 (382)
Q Consensus       120 g~~~iv~~Ll~~~~---~~~~~~~~~D~~G~TpLH~A~~  155 (382)
                      |+.+++++|++++.   ..+++.+..+..|++|+-.+..
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhhh
Confidence            99999999998810   0126778888888888777653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.1e-12  Score=91.62  Aligned_cols=47  Identities=23%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHH
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLA  116 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A  116 (382)
                      +.+|..|.||||+||..|+.+++++|++.+.+ ++.+|.+|+||||+|
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence            78899999999999999999999999976666 788999999999997

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.33  E-value=1.5e-12  Score=97.16  Aligned_cols=99  Identities=14%  Similarity=0.083  Sum_probs=78.6

Q ss_pred             ccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCC
Q 037143           42 ISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRR  121 (382)
Q Consensus        42 h~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  121 (382)
                      .+++  ++|..+.|+-....+-+.   |. ...|++|||+|+-.|..+++++|+..+++ ++.+|+.|-|||..|+..||
T Consensus         7 ~W~v--kNG~~DeVk~~v~~g~nV---n~-~~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    7 AWNV--KNGEIDEVKQSVNEGLNV---NE-IYGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhhh--ccCcHHHHHHHHHccccH---HH-HhCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhh
Confidence            3455  667777776666555443   33 33689999999999999999999998888 67789999999999999999


Q ss_pred             HHHHHHHHhCCCccccccccccCCCCCHHH
Q 037143          122 TSVYNLLLSRKALGQTIFWQVDNQGNSALH  151 (382)
Q Consensus       122 ~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH  151 (382)
                      .++|++|++.|    ++-..+-.+|.+.+.
T Consensus        80 ~~cVklLL~~G----Adrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   80 RDCVKLLLQNG----ADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHHcC----cccceeCCCchhHHh
Confidence            99999999998    677777777876654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.27  E-value=9.1e-12  Score=129.62  Aligned_cols=83  Identities=19%  Similarity=0.075  Sum_probs=76.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHh
Q 037143           76 ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAK  155 (382)
Q Consensus        76 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~  155 (382)
                      .++||.|+..|+.+.++.|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+.
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G----advn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFG----ADPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHH
Confidence            3569999999999999999999887 6788999999999999999999999999998    7999999999999999999


Q ss_pred             hCCCCccc
Q 037143          156 YGDHLPLL  163 (382)
Q Consensus       156 ~g~~~~~~  163 (382)
                      .|+.++++
T Consensus       158 ~g~~~iv~  165 (664)
T PTZ00322        158 NGFREVVQ  165 (664)
T ss_pred             CCcHHHHH
Confidence            99976653

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.25  E-value=4.9e-12  Score=87.66  Aligned_cols=50  Identities=26%  Similarity=0.288  Sum_probs=40.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          109 EKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       109 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |+||||+|++.|+.+++++|++.+    .++|.+|.+|+||||+|+..|+.+++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~----~din~~d~~g~t~lh~A~~~g~~~~~   50 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG----ADINAQDEDGRTPLHYAAKNGNIDIV   50 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT----SGTT-B-TTS--HHHHHHHTT-HHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHccCHHHH
Confidence            789999999999999999999998    78999999999999999999986554

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.22  E-value=4.9e-11  Score=106.35  Aligned_cols=120  Identities=26%  Similarity=0.171  Sum_probs=98.0

Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCC-----HHHHHHHHhCCCcccccccccc
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRR-----TSVYNLLLSRKALGQTIFWQVD  143 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~-----~~iv~~Ll~~~~~~~~~~~~~D  143 (382)
                      ...+..+.+++|.++..+..++++.++..+.+. +.+|..|.||||+|+..++     .+++++|++.+.. ....+.+|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~-~~~~~~~~  144 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD-LDVNNLRD  144 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC-CCCccccC
Confidence            344556899999999999999999999998885 8899999999999999999     9999999999920 02777789


Q ss_pred             CCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          144 NQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       144 ~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                      .+|+||||+|+..|+.+++.+               .++   .+...+.+|..|.|+++.+....
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~---------------ll~---~~~~~~~~~~~g~t~l~~a~~~~  191 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVEL---------------LLE---AGADPNSRNSYGVTALDPAAKNG  191 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHH---------------HHh---cCCCCcccccCCCcchhhhcccc
Confidence            999999999999999654321               111   13335677999999999987764

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.21  E-value=1.7e-11  Score=91.62  Aligned_cols=107  Identities=18%  Similarity=0.089  Sum_probs=84.1

Q ss_pred             cHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhh
Q 037143           77 TPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKY  156 (382)
Q Consensus        77 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~  156 (382)
                      --+.|+.++|..+-|+..+..+-+ ++.. -.||+|||+|+..|+.+++++|+..|    ++++.+|+.|-|||--|++.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~n-Vn~~-~ggR~plhyAAD~GQl~ilefli~iG----A~i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLN-VNEI-YGGRTPLHYAADYGQLSILEFLISIG----ANIQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcccc-HHHH-hCCcccchHhhhcchHHHHHHHHHhc----cccCCccccCCcHHHHHHHH
Confidence            346789999999999999888755 4432 38999999999999999999999999    89999999999999999999


Q ss_pred             CCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          157 GDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       157 g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      ||.+.+++               .+..   ..+...+-.+|.+.++-..++
T Consensus        78 GH~~cVkl---------------LL~~---GAdrt~~~PdG~~~~eate~e  110 (117)
T KOG4214|consen   78 GHRDCVKL---------------LLQN---GADRTIHAPDGTALIEATEEE  110 (117)
T ss_pred             hhHHHHHH---------------HHHc---CcccceeCCCchhHHhhccHH
Confidence            99776542               1111   122346667788777665543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.17  E-value=3.1e-11  Score=107.95  Aligned_cols=118  Identities=20%  Similarity=0.168  Sum_probs=104.2

Q ss_pred             CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHH
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLA  116 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A  116 (382)
                      -..||..++  .+|+.+....|++...+.   |..|..|.|||..|+.+|+.++++.|++.++|....++..+.||||.|
T Consensus        12 ~~~~Lle~i--~Kndt~~a~~LLs~vr~v---n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   12 PKSPLLEAI--DKNDTEAALALLSTVRQV---NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             hhhHHHHHH--ccCcHHHHHHHHHHhhhh---hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH
Confidence            456887777  678888777777765444   888999999999999999999999999999997777888999999999


Q ss_pred             HHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          117 IENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       117 ~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +.+|+.++.++|++.|    +.....+.-|+|+-.+|+.-|+.+.+.
T Consensus        87 ALSGn~dvcrllldaG----a~~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAG----ARMYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             HHcCCchHHHHHHhcc----CccccccchhhhHHHHHHHhcchHHHH
Confidence            9999999999999999    678888889999999999999988764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.14  E-value=2.5e-11  Score=124.76  Aligned_cols=136  Identities=18%  Similarity=0.101  Sum_probs=96.1

Q ss_pred             HHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHh
Q 037143           16 IQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL   95 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   95 (382)
                      ..+|+.|+.+....+...|.++.|+|-+||  ..|..+++++|+..+++.   ..++-...|||.+|..-|.+++|+.|+
T Consensus       803 ~tvV~~llk~ha~veaQsdrtkdt~lSlac--sggr~~vvelLl~~gank---ehrnvsDytPlsla~Sggy~~iI~~ll  877 (2131)
T KOG4369|consen  803 ITVVQDLLKAHADVEAQSDRTKDTMLSLAC--SGGRTRVVELLLNAGANK---EHRNVSDYTPLSLARSGGYTKIIHALL  877 (2131)
T ss_pred             hHHHHHHHhhhhhhhhhcccccCceEEEec--CCCcchHHHHHHHhhccc---cccchhhcCchhhhcCcchHHHHHHHh
Confidence            457777888733333445666999999999  668999999999998876   556667789999998888999999988


Q ss_pred             hhCCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHhCCCcccccccccc-CCCCCHHHHHHhhCCCCc
Q 037143           96 DTFPVAMWDL--DPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVD-NQGNSALHLAAKYGDHLP  161 (382)
Q Consensus        96 ~~~~~~~~~~--d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpLH~A~~~g~~~~  161 (382)
                      ..+.+ ++.+  .+.|-.||++|..+||.+.++.|++.|    .++|.+- .+-||+|-+|+..|+.++
T Consensus       878 S~Gse-InSrtgSklgisPLmlatmngh~~at~~ll~~g----sdiNaqIeTNrnTaltla~fqgr~ev  941 (2131)
T KOG4369|consen  878 SSGSE-INSRTGSKLGISPLMLATMNGHQAATLSLLQPG----SDINAQIETNRNTALTLALFQGRPEV  941 (2131)
T ss_pred             hcccc-cccccccccCcchhhhhhhccccHHHHHHhccc----chhccccccccccceeeccccCcchH
Confidence            88866 3333  446788888888888888888888777    3444321 233444444444444333

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=5.6e-11  Score=113.99  Aligned_cols=75  Identities=20%  Similarity=0.142  Sum_probs=43.2

Q ss_pred             HHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCc
Q 037143           82 AAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLP  161 (382)
Q Consensus        82 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~  161 (382)
                      |+..|..|+|+.++..-.| ....+.+|-|+||-|+..||.+||++|++.|    +++|+.|.+|+||||+|+..++..+
T Consensus       557 aaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~g----anVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFG----ANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             hhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcC----CcccCccCCCCchhhhhhhcCchHH
Confidence            5556666666665544333 3344555666666666666666666666665    5666666666666666665555443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.08  E-value=5.6e-11  Score=122.25  Aligned_cols=139  Identities=22%  Similarity=0.143  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...|++++|+.+  |++++- |..|.+||..|+  ..++..+|+.|+++.++..  -+.|..+.|+|-+||..|..++|+
T Consensus       768 gh~e~vellv~r--ganiehrdkkgf~plImaa--tagh~tvV~~llk~ha~ve--aQsdrtkdt~lSlacsggr~~vve  841 (2131)
T KOG4369|consen  768 GHREEVELLVVR--GANIEHRDKKGFVPLIMAA--TAGHITVVQDLLKAHADVE--AQSDRTKDTMLSLACSGGRTRVVE  841 (2131)
T ss_pred             ccHHHHHHHHHh--cccccccccccchhhhhhc--ccCchHHHHHHHhhhhhhh--hhcccccCceEEEecCCCcchHHH
Confidence            346789999998  888775 555999999999  6799999999999877653  556778999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccc--cCCCCCHHHHHHhhCCCCccc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQV--DNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~--D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +||..+.+ -+.++-...|||-+|...|..+++..|+..|    +.+|.+  .+.|-.||.+|+.+||....+
T Consensus       842 lLl~~gan-kehrnvsDytPlsla~Sggy~~iI~~llS~G----seInSrtgSklgisPLmlatmngh~~at~  909 (2131)
T KOG4369|consen  842 LLLNAGAN-KEHRNVSDYTPLSLARSGGYTKIIHALLSSG----SEINSRTGSKLGISPLMLATMNGHQAATL  909 (2131)
T ss_pred             HHHHhhcc-ccccchhhcCchhhhcCcchHHHHHHHhhcc----cccccccccccCcchhhhhhhccccHHHH
Confidence            99999877 4557778899999999999999999999999    566655  568999999999999966543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=4.1e-10  Score=108.15  Aligned_cols=99  Identities=14%  Similarity=0.027  Sum_probs=82.4

Q ss_pred             CCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 037143           48 DVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNL  127 (382)
Q Consensus        48 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~  127 (382)
                      ..|.++.|+-.+..-.+.   .+.|++|-|+||-|+..||.+||++|++.+.+ ++..|.+||||||+|+..++..+++.
T Consensus       559 LeGEldlVq~~i~ev~Dp---SqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~ckq  634 (752)
T KOG0515|consen  559 LEGELDLVQRIIYEVTDP---SQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMCKQ  634 (752)
T ss_pred             hcchHHHHHHHHHhhcCC---CCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHHHH
Confidence            567788777666554333   66788999999999999999999999999988 78899999999999999999999999


Q ss_pred             HHhCCCccccccccccCCCCCHHHHH
Q 037143          128 LLSRKALGQTIFWQVDNQGNSALHLA  153 (382)
Q Consensus       128 Ll~~~~~~~~~~~~~D~~G~TpLH~A  153 (382)
                      |++.|.   +.+-..=.++.||..-+
T Consensus       635 LVe~Ga---avfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  635 LVESGA---AVFASTLSDMETAAEKC  657 (752)
T ss_pred             HHhccc---eEEeeecccccchhhhc
Confidence            999993   44445556788886543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.79  E-value=2.9e-09  Score=95.52  Aligned_cols=96  Identities=14%  Similarity=0.095  Sum_probs=83.5

Q ss_pred             CcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCC
Q 037143           30 QYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAE  109 (382)
Q Consensus        30 ~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G  109 (382)
                      .+..|.+|.|||..|+  ..|+.+.+++|++.|++..  ..++..+.||||+||..|+.++.+.|++.+.. ....+.-|
T Consensus        38 vn~~D~sGMs~LahAa--ykGnl~~v~lll~~gaDvN--~~qhg~~YTpLmFAALSGn~dvcrllldaGa~-~~~vNsvg  112 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAA--YKGNLTLVELLLELGADVN--DKQHGTLYTPLMFAALSGNQDVCRLLLDAGAR-MYLVNSVG  112 (396)
T ss_pred             hhccCCCcccHHHHHH--hcCcHHHHHHHHHhCCCcC--cccccccccHHHHHHHcCCchHHHHHHhccCc-cccccchh
Confidence            3446778999999999  7899999999999998863  44567799999999999999999999999876 56678899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHh
Q 037143          110 KNILLLAIENRRTSVYNLLLS  130 (382)
Q Consensus       110 ~t~Lh~A~~~g~~~iv~~Ll~  130 (382)
                      +|+-..|+--|+.++|..+=.
T Consensus       113 rTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  113 RTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             hhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999887633

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.62  E-value=2.7e-08  Score=100.42  Aligned_cols=82  Identities=20%  Similarity=0.187  Sum_probs=59.2

Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCC
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDP-AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGN  147 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~  147 (382)
                      |..|..|+|+||+|+..|..++++.|++++.+ +..+|. .|+||||-|..+|+.+++.+|+++|    ..+..+|++|.
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g----~SL~i~Dkegl  120 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKG----RSLRIKDKEGL  120 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcC----CceEEecccCC
Confidence            55666777777777777777777777777666 334444 6777777777777777777777777    56777777777


Q ss_pred             CHHHHHHh
Q 037143          148 SALHLAAK  155 (382)
Q Consensus       148 TpLH~A~~  155 (382)
                      .||..-++
T Consensus       121 splq~~~r  128 (1267)
T KOG0783|consen  121 SPLQFLSR  128 (1267)
T ss_pred             CHHHHHhh
Confidence            77777665

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.58  E-value=2e-08  Score=95.71  Aligned_cols=88  Identities=16%  Similarity=0.087  Sum_probs=79.5

Q ss_pred             cCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHH
Q 037143           72 SRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALH  151 (382)
Q Consensus        72 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH  151 (382)
                      +.++..++.+|++.|++..++.+.-.+.| .+..|.+.||+||.|+..|+.+++++|++..   +.+++.+|..|+|||.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~---kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNAC---KVDPDPKDRWGRTPLD  578 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHH---cCCCChhhccCCCcch
Confidence            34578899999999999999988877777 7889999999999999999999999999986   3799999999999999


Q ss_pred             HHHhhCCCCccc
Q 037143          152 LAAKYGDHLPLL  163 (382)
Q Consensus       152 ~A~~~g~~~~~~  163 (382)
                      -|...+|.++++
T Consensus       579 dA~~F~h~~v~k  590 (622)
T KOG0506|consen  579 DAKHFKHKEVVK  590 (622)
T ss_pred             HhHhcCcHHHHH
Confidence            999999977764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.56  E-value=8.5e-08  Score=58.97  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=21.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCcccccccccc
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVD  143 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D  143 (382)
                      +|+||||+|++.|+.+++++|+++|    ++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g----a~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG----ADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT----SCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc----CCCCCCC
Confidence            3666777777777777777776666    5666655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.53  E-value=1e-07  Score=57.17  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=12.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCC
Q 037143          109 EKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus       109 G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      |+||||+||+.|+.+++++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            455555555555555555555544

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.49  E-value=3.6e-08  Score=93.93  Aligned_cols=91  Identities=19%  Similarity=0.037  Sum_probs=80.3

Q ss_pred             CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHH
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLA  116 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A  116 (382)
                      +..++.+|+  ..|+...++-+.-.+.+.   +..|.+.+|+||.||.+|+++++++|++.+....+.+|.-|+|||--|
T Consensus       506 ~~i~~~~aa--~~GD~~alrRf~l~g~D~---~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  506 TVINVMYAA--KNGDLSALRRFALQGMDL---ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             chhhhhhhh--hcCCHHHHHHHHHhcccc---cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            677899999  789998887666666555   778899999999999999999999999998777888999999999999


Q ss_pred             HHcCCHHHHHHHHhCC
Q 037143          117 IENRRTSVYNLLLSRK  132 (382)
Q Consensus       117 ~~~g~~~iv~~Ll~~~  132 (382)
                      ...+|.+++++|-+..
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            9999999999997654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.47  E-value=1.7e-07  Score=90.87  Aligned_cols=89  Identities=16%  Similarity=0.085  Sum_probs=65.5

Q ss_pred             CcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHc
Q 037143           40 PRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIEN  119 (382)
Q Consensus        40 PLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~  119 (382)
                      |||+++  -..+.+..+.++..... ...+.+|..|.||||+|+.-|+.+.++.|+..+++ +..+|++|++|||.|+..
T Consensus        23 ~lh~~~--~~~~~~sl~~el~~~~~-~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   23 PLHWAV--VTTDSDSLEQELLAKVS-LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             ccchhh--hccchhhHHHHHhhhhh-ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHc
Confidence            488887  44554444332222211 12266778899999999999999999999998887 677899999999999999


Q ss_pred             CCHHHHHHHHhCC
Q 037143          120 RRTSVYNLLLSRK  132 (382)
Q Consensus       120 g~~~iv~~Ll~~~  132 (382)
                      |+.+++..++.+.
T Consensus        99 g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   99 GNEQIITEVLRHL  111 (560)
T ss_pred             CCHHHHHHHHHHh
Confidence            9988877766543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.45  E-value=1.7e-06  Score=83.10  Aligned_cols=81  Identities=16%  Similarity=0.063  Sum_probs=72.2

Q ss_pred             HHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhC
Q 037143           78 PILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYG  157 (382)
Q Consensus        78 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g  157 (382)
                      -||..++.|+.+..-.||..+++....--..|.||||.|++.|+..-+++|+-.|    +|++..|.+|.||+.+|-..|
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG----AD~~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG----ADPGAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhcc----CCCCCCCCCCCcHHHHHHhcC
Confidence            5899999999999888888888844434458999999999999999999999999    899999999999999999999


Q ss_pred             CCCcc
Q 037143          158 DHLPL  162 (382)
Q Consensus       158 ~~~~~  162 (382)
                      |.++.
T Consensus       212 H~~la  216 (669)
T KOG0818|consen  212 HHELA  216 (669)
T ss_pred             chHHH
Confidence            97763

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.44  E-value=9e-08  Score=96.75  Aligned_cols=91  Identities=10%  Similarity=-0.112  Sum_probs=73.8

Q ss_pred             cCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCcc
Q 037143           24 DHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMW  103 (382)
Q Consensus        24 ~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~  103 (382)
                      .+.....+..|.-|+|+||+|+  ..+...+++.|+++|.+..  .+..+.|+||||.|...|++|++..||+++.. ..
T Consensus        39 k~c~n~anikD~~GR~alH~~~--S~~k~~~l~wLlqhGidv~--vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~  113 (1267)
T KOG0783|consen   39 KSCQNLANIKDRYGRTALHIAV--SENKNSFLRWLLQHGIDVF--VQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LR  113 (1267)
T ss_pred             HhhhhhhhHHHhhccceeeeee--ccchhHHHHHHHhcCceee--eccccccchHhhHhhhhchHHHHHHHHhcCCc-eE
Confidence            3333343445666999999999  5688899999999998762  23335699999999999999999999999866 78


Q ss_pred             ccCCCCCcHHHHHHHc
Q 037143          104 DLDPAEKNILLLAIEN  119 (382)
Q Consensus       104 ~~d~~G~t~Lh~A~~~  119 (382)
                      .+|++|..||..-++-
T Consensus       114 i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             EecccCCCHHHHHhhc
Confidence            8999999999987763

>PF13606 Ank_3: Ankyrin repeat

Probab=98.42  E-value=2.9e-07  Score=55.16  Aligned_cols=27  Identities=33%  Similarity=0.389  Sum_probs=25.4

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHhhhCCC
Q 037143           74 RKETPILVAAKMGVTEMVKKILDTFPV  100 (382)
Q Consensus        74 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  100 (382)
                      +|+||||+||+.|+.|++++|++.+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            489999999999999999999999876

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.41  E-value=3e-07  Score=89.19  Aligned_cols=82  Identities=22%  Similarity=0.220  Sum_probs=70.0

Q ss_pred             cHHHHHHHcCcHHHHHHHhh-hCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHh
Q 037143           77 TPILVAAKMGVTEMVKKILD-TFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAK  155 (382)
Q Consensus        77 tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~  155 (382)
                      -|+|++......+-++..+. .....++..|..|+||||+|+.-|+.+.++.|+..+    +++..+|++|++|||.|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~----Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG----ADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC----CCccccccccccHHHHHHH
Confidence            45999998888776665443 334557788999999999999999999999999999    7999999999999999999


Q ss_pred             hCCCCcc
Q 037143          156 YGDHLPL  162 (382)
Q Consensus       156 ~g~~~~~  162 (382)
                      .|+.+++
T Consensus        98 ~g~~q~i  104 (560)
T KOG0522|consen   98 TGNEQII  104 (560)
T ss_pred             cCCHHHH
Confidence            9997654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.41  E-value=3.6e-07  Score=56.12  Aligned_cols=32  Identities=28%  Similarity=0.300  Sum_probs=28.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHhhhCCCCccccC
Q 037143           74 RKETPILVAAKMGVTEMVKKILDTFPVAMWDLD  106 (382)
Q Consensus        74 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d  106 (382)
                      +|.||||+|+.+|+.+++++|++.+++ ++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD-INARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC-TTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC-CCCCC
Confidence            489999999999999999999998877 55554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.41  E-value=1.5e-07  Score=91.39  Aligned_cols=89  Identities=26%  Similarity=0.232  Sum_probs=79.1

Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCC
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTFP-VAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGN  147 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~-~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~  147 (382)
                      ..++.+..|-||+|++.|+-|+|+++++++| ++.+..|..|+|+||-|+..++..+.++|++.|    +.+...|..|.
T Consensus       893 l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdag----asl~ktd~kg~  968 (1004)
T KOG0782|consen  893 LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAG----ASLRKTDSKGK  968 (1004)
T ss_pred             EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc----hhheecccCCC
Confidence            3445678999999999999999999999986 345567899999999999999999999999999    78889999999


Q ss_pred             CHHHHHHhhCCCCc
Q 037143          148 SALHLAAKYGDHLP  161 (382)
Q Consensus       148 TpLH~A~~~g~~~~  161 (382)
                      ||-.-|-+.|+.++
T Consensus       969 tp~eraqqa~d~dl  982 (1004)
T KOG0782|consen  969 TPQERAQQAGDPDL  982 (1004)
T ss_pred             ChHHHHHhcCCchH
Confidence            99999999888665

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.25  E-value=1e-06  Score=85.76  Aligned_cols=101  Identities=13%  Similarity=-0.048  Sum_probs=87.4

Q ss_pred             CCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCC
Q 037143           28 PDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDP  107 (382)
Q Consensus        28 ~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~  107 (382)
                      |.....+.+..|-||+|+  ..|+-++|+++++++++.+.+ ..|+.|.|+||-|+..++..+.++|++.++. ....|.
T Consensus       890 g~ll~~~~~~~sllh~a~--~tg~~eivkyildh~p~elld-~~de~get~lhkaa~~~~r~vc~~lvdagas-l~ktd~  965 (1004)
T KOG0782|consen  890 GSLLIQGPDHCSLLHYAA--KTGNGEIVKYILDHGPSELLD-MADETGETALHKAACQRNRAVCQLLVDAGAS-LRKTDS  965 (1004)
T ss_pred             CceEeeCcchhhHHHHHH--hcCChHHHHHHHhcCCHHHHH-HHhhhhhHHHHHHHHhcchHHHHHHHhcchh-heeccc
Confidence            444445566899999999  789999999999999987554 4478899999999999999999999999887 567899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      +|.||-.-|-+.|..+...||-++.
T Consensus       966 kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  966 KGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             CCCChHHHHHhcCCchHHHHHhhhh
Confidence            9999999999999999999996654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.21  E-value=1.4e-06  Score=85.02  Aligned_cols=123  Identities=14%  Similarity=0.087  Sum_probs=84.1

Q ss_pred             hhHHHHHHHhHHHHHHHHHHHcCCCCCCcccccC-CCCCcccccccCCCcccccccCCCCCchhhh-hhhccCCCCcHHH
Q 037143            3 KNLREKKETYTWAIQVLNELVDHRNPDQYKYVYN-GQDPRISTFGQDVNAFTARETPLDPSTYKKK-NARRSRRKETPIL   80 (382)
Q Consensus         3 ~~~~~~k~~~~~~~eiv~~Ll~~~~~~~~~~~~~-G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~g~tpLh   80 (382)
                      +.-++.||...++.=.-++.|.-  -.  ..+.. |.. |.-|+  ...+...+-+|+.+|..... ....+.+|+|+||
T Consensus       594 ~s~REEkErwIr~KYeqklFLaP--l~--~te~~lgqq-Ll~A~--~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LH  666 (749)
T KOG0705|consen  594 DSSREEKERWIRAKYEQKLFLAP--LP--CTEEPLGQQ-LLRAV--AAEDLQTAILLLAHGSREEVNETCGEGDGRTALH  666 (749)
T ss_pred             cccHHHHHHHHHHHHHHHhhcCC--CC--CCCCchHHH-HHHHH--HHHHHHHHHHHHhccCchhhhccccCCCCcchhh
Confidence            34466777766665444554432  11  11111 322 23344  34566666677776654322 2344566899999


Q ss_pred             HHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 037143           81 VAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKA  133 (382)
Q Consensus        81 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  133 (382)
                      +||+.|++.+.++|+=++.| +..+|.+|+|+|.||-+.|..+++..|+.+|.
T Consensus       667 La~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  667 LAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             hhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            99999999999999987777 67789999999999999999999999999883

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.05  E-value=2.7e-06  Score=89.07  Aligned_cols=85  Identities=22%  Similarity=0.139  Sum_probs=78.4

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHH
Q 037143           73 RRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHL  152 (382)
Q Consensus        73 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~  152 (382)
                      ..|.|+||.|+..|..-++++|++.+++ ++..|..|+||||.+...|+...+..|++++    ++.++.|.+|.+||++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~----a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRG----ADPNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccc----ccccccCccCcchhhH
Confidence            3589999999999999999999999988 8999999999999999999999999999988    8999999999999999


Q ss_pred             HHhhCCCCcc
Q 037143          153 AAKYGDHLPL  162 (382)
Q Consensus       153 A~~~g~~~~~  162 (382)
                      |....+.+++
T Consensus       729 a~~~~~~d~~  738 (785)
T KOG0521|consen  729 AMEAANADIV  738 (785)
T ss_pred             HhhhccccHH
Confidence            9887665543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.04  E-value=3e-06  Score=81.50  Aligned_cols=86  Identities=14%  Similarity=0.002  Sum_probs=69.9

Q ss_pred             CcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHc
Q 037143           40 PRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIEN  119 (382)
Q Consensus        40 PLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~  119 (382)
                      -||..+  +.++.+..--|+..|++..-..  -+.|.||||.|++.|+..-+++|+-.++| ++..|.+|.||+-+|-..
T Consensus       136 QLhasv--Rt~nlet~LRll~lGA~~N~~h--pekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  136 QLHSSV--RTGNLETCLRLLSLGAQANFFH--PEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHh--hcccHHHHHHHHHcccccCCCC--cccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHhc
Confidence            367777  6677777767777776652222  24699999999999999999999999888 788999999999999999


Q ss_pred             CCHHHHHHHHh
Q 037143          120 RRTSVYNLLLS  130 (382)
Q Consensus       120 g~~~iv~~Ll~  130 (382)
                      ||.++.+-|++
T Consensus       211 gH~~laeRl~e  221 (669)
T KOG0818|consen  211 GHHELAERLVE  221 (669)
T ss_pred             CchHHHHHHHH
Confidence            99988777665

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.03  E-value=0.00082  Score=69.36  Aligned_cols=105  Identities=18%  Similarity=0.166  Sum_probs=79.9

Q ss_pred             HHHHHHHcCCCC--CCcccccC-CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           17 QVLNELVDHRNP--DQYKYVYN-GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        17 eiv~~Ll~~~~~--~~~~~~~~-G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      -.|+..++....  .+.+.-+. |+++||.|+  .+.+.+++++|++.+..          -..+|.+|+..|.+++|+.
T Consensus        39 ~~V~k~l~~~~~~~lninc~d~lGr~al~iai--~nenle~~eLLl~~~~~----------~gdALL~aI~~~~v~~VE~  106 (822)
T KOG3609|consen   39 PLVAKALEYKAVSKLNINCRDPLGRLALHIAI--DNENLELQELLLDTSSE----------EGDALLLAIAVGSVPLVEL  106 (822)
T ss_pred             HHHHHHHHhccccccchhccChHhhhceeccc--ccccHHHHHHHhcCccc----------cchHHHHHHHHHHHHHHHH
Confidence            356666665433  44444444 999999999  78999999999988521          1568999999999999999


Q ss_pred             HhhhCCCC---------ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 037143           94 ILDTFPVA---------MWDLDPAEKNILLLAIENRRTSVYNLLLSRKA  133 (382)
Q Consensus        94 Ll~~~~~~---------~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  133 (382)
                      ++.+....         .......+-|||.+||..++.||++.|+.+|.
T Consensus       107 ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  107 LLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            99774221         11234467899999999999999999999883

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.96  E-value=1.1e-05  Score=79.13  Aligned_cols=80  Identities=18%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             HHHHHHcCcHHHHHHHhhhCCC--Ccc-ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHh
Q 037143           79 ILVAAKMGVTEMVKKILDTFPV--AMW-DLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAK  155 (382)
Q Consensus        79 Lh~Aa~~g~~~~v~~Ll~~~~~--~~~-~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~  155 (382)
                      |.-|+...++..+-+||.++..  ..+ .-+.+|+|+||+||+.|+..+.++|+.+|    +|+..+|.+|+|+|.+|-.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg----~dv~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG----VDVMARDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC----ccceecccCCchhhhhHhh
Confidence            5567777788888888877532  111 23568899999999999999999999998    7999999999999999999


Q ss_pred             hCCCCcc
Q 037143          156 YGDHLPL  162 (382)
Q Consensus       156 ~g~~~~~  162 (382)
                      .|..+++
T Consensus       704 a~sqec~  710 (749)
T KOG0705|consen  704 AGSQECI  710 (749)
T ss_pred             cccHHHH
Confidence            9886553

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.91  E-value=5e-06  Score=86.82  Aligned_cols=121  Identities=15%  Similarity=-0.105  Sum_probs=95.2

Q ss_pred             cCCCCCcccccccCCCcccccccCCCC-CchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           35 YNGQDPRISTFGQDVNAFTARETPLDP-STYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        35 ~~G~TPLh~A~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      -.|+|-||+++  ..++...++-+++- +...   ...|.+|.-.+|+ |..++.+..-+++.-....++.+|.+|||||
T Consensus       572 ~r~~lllhL~a--~~lyawLie~~~e~~~~~~---~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  572 FRDMLLLHLLA--ELLYAWLIEKVIEWAGSGD---LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             CcchHHHHHHH--HHhHHHHHHHHhcccccCc---hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCccc
Confidence            34999999999  66777777777764 3222   4456678888888 7778888888888777777899999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccc--cccccccCCCCCHHHHHHhhCCCCc
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQ--TIFWQVDNQGNSALHLAAKYGDHLP  161 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~D~~G~TpLH~A~~~g~~~~  161 (382)
                      |+|+..|+..++..|++.+....  .+++..+..|.|+-.+|..+|+..+
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gi  695 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGI  695 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccch
Confidence            99999999999999997764322  2445566689999999999998655

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.69  E-value=1.7e-05  Score=83.23  Aligned_cols=89  Identities=20%  Similarity=0.116  Sum_probs=79.2

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      -..|.|+||.|+  ..+...++++|+..+++.   |..|..|+||||.+...|+...+..+++++++ .+..|.+|.+||
T Consensus       653 ~~~~~s~lh~a~--~~~~~~~~e~ll~~ga~v---n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l  726 (785)
T KOG0521|consen  653 LCIGCSLLHVAV--GTGDSGAVELLLQNGADV---NALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPL  726 (785)
T ss_pred             hhcccchhhhhh--ccchHHHHHHHHhcCCcc---hhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchh
Confidence            345899999999  789999999999999886   88899999999999999999999999998877 677899999999


Q ss_pred             HHHHHcCCHHHHHHH
Q 037143          114 LLAIENRRTSVYNLL  128 (382)
Q Consensus       114 h~A~~~g~~~iv~~L  128 (382)
                      ++|....+.+++-++
T Consensus       727 ~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  727 DIAMEAANADIVLLL  741 (785)
T ss_pred             hHHhhhccccHHHHH
Confidence            999888777776655

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.63  E-value=0.00011  Score=62.74  Aligned_cols=64  Identities=19%  Similarity=0.097  Sum_probs=59.0

Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      |.+|..|+|||+.|+..|+.+.+.+|+.++...+...|..|.+++.+|-+.|+.+++..|.+..
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            7788899999999999999999999999996668889999999999999999999999998764

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.46  E-value=5.4e-05  Score=79.33  Aligned_cols=118  Identities=16%  Similarity=0.090  Sum_probs=83.1

Q ss_pred             ccCCCCcHHHHHHHcCcHHHHHHHhhh-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCH
Q 037143           71 RSRRKETPILVAAKMGVTEMVKKILDT-FPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSA  149 (382)
Q Consensus        71 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~Tp  149 (382)
                      ..-.|+|-+|+++..++.-.++.+++- +.. ....|.+|...+|+ |..++.+..-+++...   ...++.+|.+|+||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~---~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHF-CAALGYEWAFLPISAD---GVAIDIRDRNGWTP  644 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhH-hhhcCCceeEEEEeec---ccccccccCCCCcc
Confidence            345799999999999999999999985 322 34468889999999 5556666666665544   26899999999999


Q ss_pred             HHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccc--cccccCCCCCccccchhh
Q 037143          150 LHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHF--FTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       150 LH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~--~~~~N~~G~Tpldla~~~  207 (382)
                      ||+|+..|+..++..    +         ..+. ..+...  ....+-.|.|+-+++..+
T Consensus       645 L~wAa~~G~e~l~a~----l---------~~lg-a~~~~~tdps~~~p~g~ta~~la~s~  690 (975)
T KOG0520|consen  645 LHWAAFRGREKLVAS----L---------IELG-ADPGAVTDPSPETPGGKTAADLARAN  690 (975)
T ss_pred             cchHhhcCHHHHHHH----H---------HHhc-cccccccCCCCCCCCCCchhhhhhcc
Confidence            999999999665421    0         0011 111111  134455699999998754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.31  E-value=0.00058  Score=64.13  Aligned_cols=55  Identities=13%  Similarity=0.170  Sum_probs=31.0

Q ss_pred             cccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCC
Q 037143           41 RISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPV  100 (382)
Q Consensus        41 Lh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  100 (382)
                      |..|+  +.|+.+.++.|++.|.+.   |+.|.-..+||.+|+-.||.++|++|+++|+-
T Consensus        40 lceac--R~GD~d~v~~LVetgvnV---N~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   40 LCEAC--RAGDVDRVRYLVETGVNV---NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHh--hcccHHHHHHHHHhCCCc---chhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            44455  455555566555555444   55555555666666666666666666655544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.83  E-value=0.00089  Score=57.29  Aligned_cols=58  Identities=21%  Similarity=0.140  Sum_probs=53.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          102 MWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       102 ~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      ++.+|..|+|+|+.|+..|+.+.+.+|+.+|.   +.+-..|..|++++.+|-+.|...++
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~---a~vgv~d~ssldaaqlaek~g~~~fv   62 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGV---AFVGVTDESSLDAAQLAEKGGAQAFV   62 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCc---ccccccccccchHHHHHHhcChHHHH
Confidence            67889999999999999999999999999994   78999999999999999999986654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.65  E-value=0.00074  Score=69.66  Aligned_cols=108  Identities=19%  Similarity=0.097  Sum_probs=76.7

Q ss_pred             CCCcccccccCCC-CCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 037143           48 DVNAFTARETPLD-PSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYN  126 (382)
Q Consensus        48 ~~~~~~~v~~Ll~-~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~  126 (382)
                      ..|+...|+..++ ........|..|.-|+++||+|..+.|.|++++|++..-..        ..+|.+|+..|..++|+
T Consensus        34 E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE  105 (822)
T KOG3609|consen   34 ENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVE  105 (822)
T ss_pred             HcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHH
Confidence            4555555543333 22222333777888999999999999999999999875331        46899999999999999


Q ss_pred             HHHhCCCcccc------ccccccCCCCCHHHHHHhhCCCCccc
Q 037143          127 LLLSRKALGQT------IFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       127 ~Ll~~~~~~~~------~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      .++.+......      .-...=..+-|||.+||..+++++++
T Consensus       106 ~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~  148 (822)
T KOG3609|consen  106 LLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQ  148 (822)
T ss_pred             HHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHH
Confidence            99987632100      01122235679999999999999876

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.51  E-value=0.0022  Score=60.42  Aligned_cols=57  Identities=23%  Similarity=0.184  Sum_probs=52.6

Q ss_pred             CcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 037143           76 ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKA  133 (382)
Q Consensus        76 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  133 (382)
                      .--|..||+.|..+.|+.|++.+-+ +|.+|+-..+||.+|+..||.++|++|+++|.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            4568899999999999999998766 78899999999999999999999999999994

>smart00248 ANK ankyrin repeats

Probab=96.33  E-value=0.006  Score=34.37  Aligned_cols=25  Identities=40%  Similarity=0.473  Sum_probs=14.4

Q ss_pred             CCcHHHHHHHcCcHHHHHHHhhhCC
Q 037143           75 KETPILVAAKMGVTEMVKKILDTFP   99 (382)
Q Consensus        75 g~tpLh~Aa~~g~~~~v~~Ll~~~~   99 (382)
                      |.||+|+|+..|+.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4556666666666666666555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.24  E-value=0.0074  Score=33.99  Aligned_cols=25  Identities=36%  Similarity=0.401  Sum_probs=23.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      +|.||+|+|+..++.++++.|++.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4789999999999999999999987

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.52  E-value=0.015  Score=56.73  Aligned_cols=63  Identities=13%  Similarity=0.087  Sum_probs=48.2

Q ss_pred             HHHHHHHhhhCCCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHH
Q 037143           88 TEMVKKILDTFPVA-----MWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAA  154 (382)
Q Consensus        88 ~~~v~~Ll~~~~~~-----~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~  154 (382)
                      .+.+++|.++.-+.     .+..|..-.|+||+|+..|..++|.+||+.+    +|+..+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg----~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG----CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc----CCchhcccCCCCcccccc
Confidence            34456665554322     1123444679999999999999999999999    799999999999999887

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.12  E-value=0.085  Score=51.71  Aligned_cols=44  Identities=23%  Similarity=0.045  Sum_probs=39.2

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHH
Q 037143           73 RRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAI  117 (382)
Q Consensus        73 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~  117 (382)
                      .--.|+||+|+..|..++|.+||+.+.| ....|..|+||..++.
T Consensus       428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  428 YLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            3468999999999999999999999855 6678999999999987

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.53  E-value=1.9  Score=31.60  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=41.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143           76 ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus        76 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      ...+..|...|+.|+++.+++....     |   ...+..|+...+-+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            5568999999999999999976421     1   45799999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	382
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	6e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-04
2etb_A	256	Transient receptor potential cation channel subfam	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 4e-09
 Identities = 56/369 (15%), Positives = 116/369 (31%), Gaps = 121/369 (32%)

Query: 92  KKILDTF-PVAMWDLD-----PAEKNILLLAIENRRTSVYNLLLSRKALGQT--IFWQVD 143
           K IL  F    + + D        K+IL       +  + ++++S+ A+  T  +FW + 
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSIL------SKEEIDHIIMSKDAVSGTLRLFWTLL 72

Query: 144 NQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWF------QHVKKLMPRHFFTRYNDDG 197
           ++    +             F    L++ ++  +       +  +  M    +    D  
Sbjct: 73  SKQEEMVQK-----------FVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 198 KTPDEVFTESH--R-DLVKQGREWLTKTSESCSVVAALISTVAFATSAAVPGGVDQGSGK 254
              ++VF + +  R     + R+ L +   + +V+              + G +  GSGK
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--------------IDGVL--GSGK 163

Query: 255 PIL----------ENEPVFNIFAISSLVALCSSVTALV-----LFLTILTSRYQENDFA- 298
             +          + +  F IF ++  +  C+S   ++     L   I  +    +D + 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 299 -------------------KDLPRKLL---------------LG----LTTLFTSIVAIL 320
                              K     LL               L     LTT F  +   L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 321 VSFCSGHSFI------LT-NELRS--AAYPIYAATCLPVTFFALAQLPLYFDLMLAILKT 371
            +  + H  +      LT +E++S    Y       LP     L   P    ++   ++ 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIRD 339

Query: 372 VPQRS--YK 378
                  +K
Sbjct: 340 GLATWDNWK 348

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 16/92 (17%)

Query: 75  KETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENR----RTSVYNLLLS 130
           +   +  AA +G  E   ++ +            + NIL   + N     R  +   L++
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFE--KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 131 RKALGQTIFWQV---DNQGNSALHLAAKYGDH 159
           + A        +     +G +      + G +
Sbjct: 64  KGA-------DIKSRTKEGTTLFFPLFQGGGN 88

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 25/129 (19%)

Query: 46  GQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDL 105
           G DV A             K K        E P+ +AA      +VK +L     +    
Sbjct: 124 GADVQAAAN-----GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ---NSWQPA 175

Query: 106 DPAEKN-----ILLLAIEN---------RRTSVYNLLLSRKALGQTIFWQV---DNQGNS 148
           D + ++     +L   +E            TS+YN +L   A            + +G +
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235

Query: 149 ALHLAAKYG 157
            L LAA  G
Sbjct: 236 PLALAASSG 244

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 31/156 (19%)

Query: 66  KKNARRSRRKETPILVAAKMGVTEMVKKILDTFP-----VAMWDL-DPAE-KNILLLAIE 118
           +K  R   R    I  A      + ++ +L         +   +  DP   K  LL A+ 
Sbjct: 6   EKPPRLYDR--RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 119 NRR---TSVYNLLLSRKA-------LGQTIFWQVDNQGNSALHLAAKYGDHLP----LLF 164
           N          LLL                +     +G +ALH+A +   ++     L+ 
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-NMTLVTLLVE 122

Query: 165 PGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTP 200
            GA +Q      +F        +         G+ P
Sbjct: 123 NGADVQAAANGDFF-------KKTKGRPGFYFGELP 151

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 20/99 (20%)

Query: 76  ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI-------LLLAIENRR------- 121
           E P+ +AA      +V  + +         D   ++         L+AI +         
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQA---DLRRQDSRGNTVLHALVAIADNTRENTKFV 197

Query: 122 TSVYNLLLSRKALG---QTIFWQVDNQGNSALHLAAKYG 157
           T +Y+LLL + A       +   ++N G S L +AAK G
Sbjct: 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 16/90 (17%)

Query: 76  ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI-----LLLAIENRRTSVYNLLLS 130
           ETP++ A +    E +  ++     +   L     N      L  AI      V    + 
Sbjct: 174 ETPLMRAMEFRNREALD-LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 131 RKALGQTIFWQV---DNQGNSALHLAAKYG 157
                      V   DN+    L+L+ +  
Sbjct: 233 MGI-------DVNMEDNEHTVPLYLSVRAA 255

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 39/137 (28%)

Query: 76  ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI-----LLLAIENRRTSVYNLLLS 130
           +TP+ +A   G    V ++++ F     +LD    N      L LA+     SV  LL++
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELD--IYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 131 RKALGQTIFWQV---DNQGNSALHLAAKYGDHLP----LLFPGAALQVQWEIKWFQHVKK 183
             A            D  G +A HLA ++         LL   A   +  E +       
Sbjct: 68  AGA-------SPMALDRHGQTAAHLACEHR-SPTCLRALLDSAAPGTLDLEAR------- 112

Query: 184 LMPRHFFTRYNDDGKTP 200
                     N DG T 
Sbjct: 113 ----------NYDGLTA 119

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.7 bits (94), Expect = 7e-04
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 76  ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI-----LLLAIENRRTSVYNLLLS 130
           +TP+ +A    +  +V+ ++           P   +        LA E+R  +    LL 
Sbjct: 47  QTPLHLAVITTLPSVVRLLVT------AGASPMALDRHGQTAAHLACEHRSPTCLRALLD 100

Query: 131 RKALGQTIFWQVDNQGNSALHLAAKYG 157
             A G       +  G +ALH+A    
Sbjct: 101 SAAPGTLDLEARNYDGLTALHVAVNTE 127

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 28/130 (21%)

Query: 46  GQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPV----- 100
           G DV+             ++K         E P+ +AA     ++V  +L+         
Sbjct: 113 GADVHLRA------CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE 166

Query: 101 -------------AMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGN 147
                         M   +  E + L++ + +    +   L     L +      ++QG 
Sbjct: 167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI----SNHQGL 222

Query: 148 SALHLAAKYG 157
           + L LAAK G
Sbjct: 223 TPLKLAAKEG 232

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 76  ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI-----LLLAIENRRTSVYNLLLS 130
            TP+ VA+  G  ++VK +L          D   K       L  A +   T +  LLL 
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQH------QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365

Query: 131 RKALGQTIFWQVDNQGNSALHLAAKYG 157
             A   +   +V + G + L +A + G
Sbjct: 366 NGA---SPN-EVSSDGTTPLAIAKRLG 388

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 21/95 (22%)

Query: 71  RSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI-----LLLAIENRRTSVY 125
            +    TP+ +AA+ G  E V  +L+       +   A         L +A +  +  V 
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLE------KEASQACMTKKGFTPLHVAAKYGKVRVA 162

Query: 126 NLLLSRKALGQTIFWQV---DNQGNSALHLAAKYG 157
            LLL R A               G + LH+A  + 
Sbjct: 163 ELLLERDA-------HPNAAGKNGLTPLHVAVHHN 190

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 76  ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI-----LLLAIENRRTSVYNLLLS 130
                +AA+ G   ++ ++ +           A           LA EN    V N L  
Sbjct: 129 YQAFRLAAENGHLHVLNRLCE----LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 184

Query: 131 RKALGQTIFWQVDNQGNSALHLAAKYGDHL 160
                 T    +  +   A   AA    H 
Sbjct: 185 LAPTEATA--MIQAENYYAFRWAAVGRGHH 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 17/88 (19%)

Query: 76  ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALG 135
           +T        G T ++            +   +  N L  A +    S     L  +   
Sbjct: 46  DTNWWKGTSKGRTGLIPSNYV------AEQAESIDNPLHEAAKRGNLSWLRECLDNRV-- 97

Query: 136 QTIFWQV---DNQGNSALHLAAKYGDHL 160
                 V   D  G++AL+ A   G H 
Sbjct: 98  -----GVNGLDKAGSTALYWACHGG-HK 119

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 21/99 (21%)

Query: 68  NARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI-----LLLAIENRRT 122
           N        TP+ +A +     +++ +L          DP  +       L  A+     
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLK------AGADPTARMYGGRTPLGSALLRPNP 238

Query: 123 SVYNLLLSRKALGQTIFWQV---DNQGNSALHLAAKYGD 158
            +  LL +  A                 S    +    D
Sbjct: 239 ILARLLRAHGA-------PEPEDGGDKLSPCSSSGSDSD 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.93
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.92
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.91
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.9
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.9
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.9
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.9
2pnn_A	273	Transient receptor potential cation channel subfa	99.9
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.9
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.89
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.89
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
2rfa_A	232	Transient receptor potential cation channel subfa	99.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.89
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.88
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.88
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.88
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.88
2etb_A	256	Transient receptor potential cation channel subfam	99.88
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.87
2pnn_A	273	Transient receptor potential cation channel subfa	99.87
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.87
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.87
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.86
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.8
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.8
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.8
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.8
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.78
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.71
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=2.3e-28  Score=210.54  Aligned_cols=138  Identities=19%  Similarity=0.191  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...++|+.||++  |++.+. |.+|+||||+|+  ..++.+++++|++.+++.   +.+|.+|+||||+||..|+.++++
T Consensus        15 G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~--~~~~~~~~~~ll~~gad~---~~~d~~g~TpLh~A~~~g~~~~v~   87 (169)
T 4gpm_A           15 GNKDRVKDLIEN--GADVNASDSDGRTPLHHAA--ENGHKEVVKLLISKGADV---NAKDSDGRTPLHHAAENGHKEVVK   87 (169)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHhcccch---hhhccCCCCHHHHHHHcCCHHHHH
Confidence            347899999999  777765 556999999999  779999999999999876   788899999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.++++
T Consensus        88 ~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g----ad~~~~d~~G~TpL~~A~~~g~~~iv~  153 (169)
T 4gpm_A           88 LLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKG----ADVNTSDSDGRTPLDLAREHGNEEVVK  153 (169)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999888 7889999999999999999999999999998    799999999999999999999977654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=5.7e-28  Score=223.55  Aligned_cols=163  Identities=17%  Similarity=0.125  Sum_probs=134.9

Q ss_pred             HHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      .+++++|+++  |++.+. |.+|+||||+|+  ..|+.+++++|++.+++.   +..+.+|.||+|.|+..|+.++++.|
T Consensus        66 ~~~v~~Ll~~--Gadvn~~d~~G~TpLh~A~--~~g~~~~v~~Ll~~~a~~---~~~~~~g~t~l~~a~~~~~~~~~~~L  138 (269)
T 4b93_B           66 QKRLAKVPAS--GLGVNVTSQDGSSPLHVAA--LHGRADLIPLLLKHGANA---GARNADQAVPLHLACQQGHFQVVKCL  138 (269)
T ss_dssp             ---------C--CCCTTCCCTTSCCHHHHHH--HTTCTTHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHC--CCCCCCcCCCCCCHHHHHH--HcCcHHHHHHHHhcCCCc---CccCCCCCCccccccccChHHHHHHH
Confidence            3578899988  777765 556999999999  789999999999998876   77788999999999999999999999


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHH
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWE  174 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~  174 (382)
                      ++.+++ ++.+|..|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+..|+.+++++          
T Consensus       139 l~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g----advn~~~~~g~t~Lh~A~~~g~~~~v~~----------  203 (269)
T 4b93_B          139 LDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHG----ASINASNNKGNTALHEAVIEKHVFVVEL----------  203 (269)
T ss_dssp             HHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTT----CCTTCBCTTSCBHHHHHHHTTCHHHHHH----------
T ss_pred             HHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC----CCCCccccCCCcHHHHHHHcCCHHHHHH----------
Confidence            999887 6888999999999999999999999999998    7999999999999999999999766432          


Q ss_pred             HHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          175 IKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       175 ~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                           .++.   +.+++.+|++|+||+++|.+..
T Consensus       204 -----Ll~~---Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          204 -----LLLH---GASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             -----HHHT---TCCSCCCCTTSCCSGGGSCTTC
T ss_pred             -----HHHC---CCCCCCcCCCCCCHHHHHHhCC
Confidence                 2222   2346799999999999997653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=2.1e-26  Score=212.44  Aligned_cols=168  Identities=18%  Similarity=0.083  Sum_probs=116.3

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchh----------------------------
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYK----------------------------   65 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~----------------------------   65 (382)
                      ..+++++|+++  +++.+. +..|+||||+|+  ..++.+++++|++.+++.                            
T Consensus        57 ~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (282)
T 1oy3_D           57 EASTVEKLYAA--GAGVLVAERGGHTALHLAC--RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS  132 (282)
T ss_dssp             CHHHHHHHHHT--TCCSSCCCTTSCCHHHHHT--TTTCHHHHHHHSSSCCSSCCCC------------------------
T ss_pred             CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH--HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcc
Confidence            46788888888  666654 445899999988  678888888888876431                            


Q ss_pred             ----------------hhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCC-CCCcHHHHHHHcCCHHHHHHH
Q 037143           66 ----------------KKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDP-AEKNILLLAIENRRTSVYNLL  128 (382)
Q Consensus        66 ----------------~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~iv~~L  128 (382)
                                      ...+..+..|.||||+|+..|+.+++++|++.+++ ++..+. .|+||||+|+..|+.+++++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~L  211 (282)
T 1oy3_D          133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELL  211 (282)
T ss_dssp             -----------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHH
Confidence                            11255677889999999999999999999988877 455554 589999999999999999999


Q ss_pred             HhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          129 LSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       129 l~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                      ++.|    ++++.+|.+|+||||+|+..|+.+++++               .++.   +..++.+|++|.||++.+....
T Consensus       212 l~~g----ad~~~~d~~g~tpL~~A~~~~~~~~v~~---------------Ll~~---ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          212 LKAG----ADPTARMYGGRTPLGSALLRPNPILARL---------------LRAH---GAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHTT----CCTTCCCTTSCCHHHHHHTSSCHHHHHH---------------HHHT---TCCCCCCC--------------
T ss_pred             HHcC----CCCcccccCCCCHHHHHHHcCCcHHHHH---------------HHHc---CCCcCcCCCcccccccccCCcc
Confidence            9888    7888899999999999998888655431               1222   2335689999999999987765


Q ss_pred             H
Q 037143          209 R  209 (382)
Q Consensus       209 ~  209 (382)
                      .
T Consensus       270 ~  270 (282)
T 1oy3_D          270 D  270 (282)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.93  E-value=1.7e-26  Score=207.28  Aligned_cols=164  Identities=17%  Similarity=0.060  Sum_probs=80.8

Q ss_pred             HHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      .+++++|+++  +.+.+. |..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.+++++|
T Consensus        53 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~L  125 (231)
T 3aji_A           53 TEIVEFLLQL--GVPVNDKDDAGWSPLHIAA--SAGXDEIVKALLVKGAHV---NAVNQNGCTPLHYAASKNRHEIAVML  125 (231)
T ss_dssp             HHHHHHHHHT--TCCSCCCCTTSCCHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHh--CCCCCCcCCCCCCHHHHHH--HcCHHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3444455544  333322 223555555554  334444555554444433   33444455555555555555555555


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHH
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWE  174 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~  174 (382)
                      ++.+.+ ++..|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++           
T Consensus       126 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~-----------  189 (231)
T 3aji_A          126 LEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYK----ASTNIQDTEGNTPLHLACDEERVEEAK-----------  189 (231)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHHHHTTCHHHHH-----------
T ss_pred             HHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC----CCccccCCCCCCHHHHHHHCCCHHHHH-----------
Confidence            544443 3334444555555555555555555555544    344555555555555555544433221           


Q ss_pred             HHHHHHHHhhccccccccccCCCCCccccchhhhH
Q 037143          175 IKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHR  209 (382)
Q Consensus       175 ~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~~  209 (382)
                        +  .++.   +.+++.+|++|+||+++|.+.+.
T Consensus       190 --~--Ll~~---ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          190 --F--LVTQ---GASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             --H--HHHT---TCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             --H--HHHC---CCCCCCCCCCCCCHHHHHHhhHH
Confidence              0  1122   23456888899999999876544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=5e-27  Score=214.55  Aligned_cols=168  Identities=15%  Similarity=0.086  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           13 TWAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        13 ~~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ....++++.|+++++......|..|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.++++
T Consensus        33 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~  107 (253)
T 1yyh_A           33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAA--RYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQ  107 (253)
T ss_dssp             -------------------CCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCChHHHHHHHHccCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHH
Confidence            346789999999954444445677999999999  779999999999998876   777889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhH
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQ  172 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~  172 (382)
                      +|++.++..++..|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++.        
T Consensus       108 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~t~L~~A~~~~~~~~v~~--------  175 (253)
T 1yyh_A          108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH----ADVNAVDDLGKSALHWAAAVNNVDAAVV--------  175 (253)
T ss_dssp             HHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT----CCTTCBCTTSCBHHHHHHHHTCHHHHHH--------
T ss_pred             HHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHH--------
Confidence            9999987557888999999999999999999999999998    7899999999999999999998665432        


Q ss_pred             HHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          173 WEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       173 ~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                             .++.   +.+++.+|++|.||+++|...
T Consensus       176 -------Ll~~---ga~~~~~~~~g~tpL~~A~~~  200 (253)
T 1yyh_A          176 -------LLKN---GANKDMQNNREETPLFLAARE  200 (253)
T ss_dssp             -------HHHT---TCCTTCCCTTSCCHHHHHHHH
T ss_pred             -------HHHc---CCCCCCcCCCCCCHHHHHHHC
Confidence                   1111   122445666666666666543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=2e-26  Score=214.97  Aligned_cols=170  Identities=15%  Similarity=0.126  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...++++.|+++  +.+.+. |.+|+||||+|+  ..|+.+++++|++.+++.   +..|..|+||||+|+..|+.++++
T Consensus        51 g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~g~~~~v~  123 (299)
T 1s70_B           51 GDTEEVLRLLER--GADINYANVDGLTALHQAC--IDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAE  123 (299)
T ss_dssp             TCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHc--CCCCcccCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHH
Confidence            347899999998  666654 556999999999  779999999999998876   777889999999999999999999


Q ss_pred             HHhhhCCCCcccc------------------------------------------------------------CCCCCcH
Q 037143           93 KILDTFPVAMWDL------------------------------------------------------------DPAEKNI  112 (382)
Q Consensus        93 ~Ll~~~~~~~~~~------------------------------------------------------------d~~G~t~  112 (382)
                      +|++.+++ ++..                                                            +..|+||
T Consensus       124 ~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~  202 (299)
T 1s70_B          124 YLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA  202 (299)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCH
T ss_pred             HHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCH
Confidence            99998765 2222                                                            3568899


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhcccccccc
Q 037143          113 LLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTR  192 (382)
Q Consensus       113 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~  192 (382)
                      ||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+..|+.+++++               .++.   +.+++.
T Consensus       203 L~~A~~~g~~~~v~~Ll~~g----~d~~~~d~~g~tpL~~A~~~~~~~~v~~---------------Ll~~---gad~~~  260 (299)
T 1s70_B          203 LHVAAAKGYTEVLKLLIQAR----YDVNIKDYDGWTPLHAAAHWGKEEACRI---------------LVEN---LCDMEA  260 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHTTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTC
T ss_pred             HHHHHHCCcHHHHHHHHHcC----CCCCCcCCCCCcHHHHHHhcCCHHHHHH---------------HHHc---CCCCCC
Confidence            99999999999999999998    7999999999999999999999665432               2222   234678


Q ss_pred             ccCCCCCccccchhhhHHHHH
Q 037143          193 YNDDGKTPDEVFTESHRDLVK  213 (382)
Q Consensus       193 ~N~~G~Tpldla~~~~~~l~~  213 (382)
                      +|+.|+||+++|.+...+.++
T Consensus       261 ~d~~g~t~l~~A~~~~~~~l~  281 (299)
T 1s70_B          261 VNKVGQTAFDVADEDILGYLE  281 (299)
T ss_dssp             CCTTSCCTTTSCCSGGGHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999877554443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.93  E-value=2.5e-26  Score=205.55  Aligned_cols=145  Identities=14%  Similarity=0.070  Sum_probs=71.9

Q ss_pred             CCCCcccccccCCCcccccccCCCCC--chhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHH
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPS--TYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILL  114 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh  114 (382)
                      |+||||+|+  ..++.+++++|++.+  ++.   +..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||
T Consensus        72 g~t~L~~A~--~~~~~~~~~~Ll~~g~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~  145 (228)
T 2dzn_A           72 GWTPFHIAC--SVGNLEVVKSLYDRPLKPDL---NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLH  145 (228)
T ss_dssp             SCCHHHHHH--HHCCHHHHHHHHSSSSCCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHH
T ss_pred             CCCHHHHHH--HcCCHHHHHHHHhCCCCccc---ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHH
Confidence            444444444  334444444444443  222   33344444444444444444444444444433 3344444455555


Q ss_pred             HHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhcccccccccc
Q 037143          115 LAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYN  194 (382)
Q Consensus       115 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N  194 (382)
                      +|+..|+.+++++|++.+   .++++.+|.+|+||||+|+..|+.++++.               .++  ..+.+++.+|
T Consensus       146 ~A~~~~~~~~v~~Ll~~g---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------Ll~--~~ga~~~~~~  205 (228)
T 2dzn_A          146 RAASVGSLKLIELLCGLG---KSAVNWQDKQGWTPLFHALAEGHGDAAVL---------------LVE--KYGAEYDLVD  205 (228)
T ss_dssp             HHHHTTCHHHHHHHHTTT---CCCSCCCCTTSCCHHHHHHHTTCHHHHHH---------------HHH--HHCCCSCCBC
T ss_pred             HHHHcCCHHHHHHHHhcC---cccccCcCCCCCCHHHHHHHcCCHHHHHH---------------HHH--hcCCCCCccC
Confidence            555555555555544444   13444444555555555554444332210               110  1234567899


Q ss_pred             CCCCCccccchhh
Q 037143          195 DDGKTPDEVFTES  207 (382)
Q Consensus       195 ~~G~Tpldla~~~  207 (382)
                      ++|+||+++|.+.
T Consensus       206 ~~g~t~l~~A~~~  218 (228)
T 2dzn_A          206 NKGAKAEDVALNE  218 (228)
T ss_dssp             TTSCBGGGGCSST
T ss_pred             CCCCcHHHHHHHH
Confidence            9999999999764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.93  E-value=2.8e-26  Score=206.18  Aligned_cols=175  Identities=13%  Similarity=0.033  Sum_probs=136.7

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhh--hhccCCCCcHHHHHHHcCcHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKN--ARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~--~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ..++++.|+++.+......|..|+||||+|+  ..++.+++++|++.+++....  +..|..|+||||+|+..|+.++++
T Consensus        15 ~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   92 (232)
T 2rfa_A           15 DVQALSKLLKFEGCEVHQRGAMGETALHIAA--LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR   92 (232)
T ss_dssp             CHHHHHHHHTTTCSCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHhcCCCcccCCCCCCCHHHHHH--HcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHH
Confidence            4689999998743344445667999999999  779999999999988764221  445678999999999999999999


Q ss_pred             HHhhhCCCCccccCC-------------CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCC
Q 037143           93 KILDTFPVAMWDLDP-------------AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDH  159 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~-------------~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~  159 (382)
                      +|++.+++ ++..+.             +|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+..|+.
T Consensus        93 ~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~t~L~~A~~~~~~  167 (232)
T 2rfa_A           93 ALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG----ADIRAQDSLGNTVLHILILQPNK  167 (232)
T ss_dssp             HHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHTCSCH
T ss_pred             HHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHcCCh
Confidence            99999877 444444             7999999999999999999999998    79999999999999999999985


Q ss_pred             CccccCcchhhhHHHHHHHHHHHhhccc---cccccccCCCCCccccchhh
Q 037143          160 LPLLFPGAALQVQWEIKWFQHVKKLMPR---HFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       160 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~---~~~~~~N~~G~Tpldla~~~  207 (382)
                      +++..         -+++  .++.....   ...+.+|++|.||+++|.+.
T Consensus       168 ~~~~~---------i~~~--Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~  207 (232)
T 2rfa_A          168 TFACQ---------MYNL--LLSYDGGDHLKSLELVPNNQGLTPFKLAGVE  207 (232)
T ss_dssp             HHHHH---------HHHH--HHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HHHHH---------HHHH--HHhcCCchhhhhhhccCCCCCCCHHHHHHHc
Confidence            54310         0011  11211111   11258899999999999875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=1.9e-26  Score=202.56  Aligned_cols=172  Identities=16%  Similarity=0.123  Sum_probs=140.4

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      ..+.++.|+++++......|.+|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.+++++|
T Consensus        17 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~L   91 (201)
T 3hra_A           17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAV--HNNDIEIAKALIDRGADI---NLQNSISDSPYLYAGAQGRTEILAYM   91 (201)
T ss_dssp             CHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4678899998854444455677999999999  779999999999998876   77888999999999999999999999


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHH
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWE  174 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~  174 (382)
                      ++.++..++..|..|+||||+|+..|+.+++++|++.+.   .+++.+|.+|+||||+|+..++..-.     ...   -
T Consensus        92 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~g~t~L~~A~~~~~~~~~-----~~~---~  160 (201)
T 3hra_A           92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR---EDIDFQNDFGYTALIEAVGLREGNQL-----YQD---I  160 (201)
T ss_dssp             HHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC---CCTTCCCTTSCCHHHHHHHSSCCSHH-----HHH---H
T ss_pred             HhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCcCCCCCCCCCHHHHHHHhccchhh-----HHH---H
Confidence            977766688899999999999999999999999999983   68999999999999999998872110     000   0


Q ss_pred             HHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          175 IKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       175 ~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +++  .++.   +.+++.+|.+|.||+++|.+.
T Consensus       161 v~~--Ll~~---ga~~~~~~~~g~t~l~~A~~~  188 (201)
T 3hra_A          161 VKL--LMEN---GADQSIKDNSGRTAMDYANQK  188 (201)
T ss_dssp             HHH--HHHT---TCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHH--HHHC---CCCCCccCCCCCCHHHHHHHc
Confidence            111  1222   234578999999999999775

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=1.5e-26  Score=211.46  Aligned_cols=168  Identities=17%  Similarity=0.183  Sum_probs=142.8

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCc-hhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPST-YKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ..+++++|+++  +.+.+. |..|+||||+|+  ..++.+++++|++.++ +.   +..+..|.||||+|+..|+.++++
T Consensus        69 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~  141 (253)
T 1yyh_A           69 RSDAAKRLLEA--SADANIQDNMGRTPLHAAV--SADAQGVFQILIRNRATDL---DARMHDGTTPLILAARLAVEGMLE  141 (253)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHSTTSCT---TCCCTTCCCHHHHHHHHTCSSHHH
T ss_pred             CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCCc---cccCCCCCcHHHHHHHcChHHHHH
Confidence            46899999999  666665 455999999999  7799999999998875 43   677889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhH
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQ  172 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~  172 (382)
                      +|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.++++.        
T Consensus       142 ~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpL~~A~~~~~~~~v~~--------  208 (253)
T 1yyh_A          142 DLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNG----ANKDMQNNREETPLFLAAREGSYETAKV--------  208 (253)
T ss_dssp             HHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHH--------
T ss_pred             HHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHCCCHHHHHH--------
Confidence            99999887 6788999999999999999999999999998    7999999999999999999999665432        


Q ss_pred             HHHHHHHHHHhhccccccccccCCCCCccccchhh-hHHHH
Q 037143          173 WEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES-HRDLV  212 (382)
Q Consensus       173 ~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~-~~~l~  212 (382)
                             .++.   ..+++.+|..|+||+++|.++ +.++.
T Consensus       209 -------Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~~i~  239 (253)
T 1yyh_A          209 -------LLDH---FANRDITDHMDRLPRDIAQERMHHDIV  239 (253)
T ss_dssp             -------HHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             -------HHHc---CCCccccccCCCCHHHHHHHcCCHHHH
Confidence                   2222   233568999999999999776 44443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.93  E-value=1.6e-26  Score=198.95  Aligned_cols=140  Identities=22%  Similarity=0.225  Sum_probs=124.9

Q ss_pred             CcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHc
Q 037143           40 PRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIEN  119 (382)
Q Consensus        40 PLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~  119 (382)
                      +|+.|+  +.|+.++|+.|++.|++.   +.+|.+|+||||+|+..|+.++++.|++.+.+ ++.+|.+|+||||+|+..
T Consensus         7 ~L~~Aa--~~G~~~~v~~Ll~~Gadv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            7 RLIEAA--ENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHH--HcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHc
Confidence            689999  789999999999999887   88899999999999999999999999999887 688999999999999999


Q ss_pred             CCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCC
Q 037143          120 RRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKT  199 (382)
Q Consensus       120 g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~T  199 (382)
                      |+.+++++|++.|    +++|.+|.+|+||||+|+..|+.+++++               .++.   ..+++.+|++|+|
T Consensus        81 g~~~~v~~Ll~~g----advn~~d~~G~TpLh~A~~~g~~~~v~~---------------Ll~~---gad~~~~d~~G~T  138 (169)
T 4gpm_A           81 GHKEVVKLLISKG----ADVNAKDSDGRTPLHHAAENGHKEVVKL---------------LISK---GADVNTSDSDGRT  138 (169)
T ss_dssp             TCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCTTSCC
T ss_pred             CCHHHHHHHHHCc----CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHHc---CCCccccCCCCCC
Confidence            9999999999999    7999999999999999999999665432               2222   2346789999999


Q ss_pred             ccccchhh
Q 037143          200 PDEVFTES  207 (382)
Q Consensus       200 pldla~~~  207 (382)
                      |+++|.+.
T Consensus       139 pL~~A~~~  146 (169)
T 4gpm_A          139 PLDLAREH  146 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=1.1e-26  Score=207.50  Aligned_cols=138  Identities=16%  Similarity=0.112  Sum_probs=94.6

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      +.+++++|+++++......|.+|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.+++++|
T Consensus         3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~L   77 (223)
T 2f8y_A            3 APAVISDFIYQGASLHNQTDRTGETALHLAA--RYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQIL   77 (223)
T ss_dssp             --CCEETTEETTCCTTCCCTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHcCCCcccccCCCCCchHHHHH--HcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3456667777743333334556777777777  567777777777776654   55666777777777777777777777


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCc
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLP  161 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~  161 (382)
                      ++.++..++..|..|+||||+|+..|+.+++++|++.+    .+++.+|.+|+||||+|+..|+.++
T Consensus        78 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~  140 (223)
T 2f8y_A           78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH----ADVNAVDDLGKSALHWAAAVNNVDA  140 (223)
T ss_dssp             HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC----CCCcCcCCCCCcHHHHHHHcCCHHH
Confidence            77766446666777777777777777777777777776    5677777777777777777776444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=9.1e-26  Score=201.41  Aligned_cols=164  Identities=15%  Similarity=0.160  Sum_probs=139.9

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCc-hhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPST-YKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ..+++++|+++  +.+.+. +..|+||||+|+  ..++.+++++|++.++ +.   +..+..|.||||+|+..|+.++++
T Consensus        37 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~  109 (223)
T 2f8y_A           37 RSDAAKRLLEA--SADANIQDNMGRTPLHAAV--SADAQGVFQILIRNRATDL---DARMHDGTTPLILAARLAVEGMLE  109 (223)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHBTTSCT---TCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCCc---ccCCCCCCcHHHHHHHhCcHHHHH
Confidence            37899999999  666654 556999999999  7799999999998775 33   667888999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhH
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQ  172 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~  172 (382)
                      .|++.+++ ++..|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++.        
T Consensus       110 ~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~--------  176 (223)
T 2f8y_A          110 DLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNG----ANKDMQNNREETPLFLAAREGSYETAKV--------  176 (223)
T ss_dssp             HHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHHTCHHHHHH--------
T ss_pred             HHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCcCHHHHHHHcCCHHHHHH--------
Confidence            99998877 6778999999999999999999999999998    7999999999999999999998665431        


Q ss_pred             HHHHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          173 WEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       173 ~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                             .++..   .+.+.+|..|.||+++|.+..
T Consensus       177 -------Ll~~g---a~~~~~~~~g~t~l~~A~~~~  202 (223)
T 2f8y_A          177 -------LLDHF---ANRDITDHMDRLPRDIAQERM  202 (223)
T ss_dssp             -------HHHTT---CCTTCCCTTCCCHHHHHHHTT
T ss_pred             -------HHHcC---CCCccccccCCCHHHHHHHhc
Confidence                   22222   235688999999999997753

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.92  E-value=3.5e-26  Score=196.24  Aligned_cols=139  Identities=17%  Similarity=0.119  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ...++++.|+++++......|..|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.+++++
T Consensus        13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~   87 (172)
T 3v30_A           13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWAS--AFGEIETVRFLLEWGADP---HILAKERESALSLASTGGYTDIVGL   87 (172)
T ss_dssp             TCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHH--HTTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHcCcccccCCCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCc---hhhcccCCCHHHHHHHCCCHHHHHH
Confidence            34689999999854434455677999999999  779999999999998776   7778899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.+++
T Consensus        88 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~~  151 (172)
T 3v30_A           88 LLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARG----ADLTTEADSGYTPMDLAVALGYRKVQ  151 (172)
T ss_dssp             HHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHhCcHHHH
Confidence            9999887 6788999999999999999999999999998    79999999999999999999996654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=5e-26  Score=203.64  Aligned_cols=169  Identities=17%  Similarity=0.135  Sum_probs=140.5

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      ..++++.|+++++......|.+|+||||+|+  ..++.+++++|++.+++.......+..|+||||+|+..|+.+++++|
T Consensus        14 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   91 (228)
T 2dzn_A           14 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSV--SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL   91 (228)
T ss_dssp             CHHHHHHHHHHCGGGTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             CHHHHHHHHhcCccccccCCCCCCCHHHHHH--HcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4689999999855544456777999999999  77999999999999844322232678899999999999999999999


Q ss_pred             hhhC--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhH
Q 037143           95 LDTF--PVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQ  172 (382)
Q Consensus        95 l~~~--~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~  172 (382)
                      ++.+  ++ ++..|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.++++.        
T Consensus        92 l~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~--------  158 (228)
T 2dzn_A           92 YDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENG----ASVRIKDKFNQIPLHRAASVGSLKLIEL--------  158 (228)
T ss_dssp             HSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHHHHTTCHHHHHH--------
T ss_pred             HhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcC----CCccccCCCCCCHHHHHHHcCCHHHHHH--------
Confidence            9987  55 6778999999999999999999999999998    7999999999999999999998655421        


Q ss_pred             HHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          173 WEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       173 ~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                             .++  ....+++.+|.+|.||+++|...
T Consensus       159 -------Ll~--~g~~~~~~~d~~g~t~L~~A~~~  184 (228)
T 2dzn_A          159 -------LCG--LGKSAVNWQDKQGWTPLFHALAE  184 (228)
T ss_dssp             -------HHT--TTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             -------HHh--cCcccccCcCCCCCCHHHHHHHc
Confidence                   111  12244678999999999998765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=1.5e-25  Score=201.79  Aligned_cols=183  Identities=19%  Similarity=0.169  Sum_probs=134.6

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ..+++++|+++  +.+.+. +..|+||||+|+  ..++.+++++|++.+++.   +..+..|.||||+|+..|+.+++++
T Consensus        23 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~   95 (237)
T 3b7b_A           23 HVDICHMLVQA--GANIDTCSEDQRTPLMEAA--ENNHLEAVKYLIKAGALV---DPKDAEGSTCLHLAAKKGHYEVVQY   95 (237)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHTTTCCC---CCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHc--CCCcCccCCCCCCHHHHHH--HhCCHHHHHHHHhCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHH
Confidence            46788999988  555554 455999999998  678889999999888765   6667788999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcccc---Cc----
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLF---PG----  166 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~---~~----  166 (382)
                      |++.++..++..|..|+||||+|+..|+.+++++|++.|    .+++.+|.+|+||||+|+..|+.++++.   .|    
T Consensus        96 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  171 (237)
T 3b7b_A           96 LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG----SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH  171 (237)
T ss_dssp             HHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT
T ss_pred             HHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            998876557778888999999999999999999999888    6888888889999999988888666542   11    


Q ss_pred             -------chhhhHHHHHHHHHHHhhc-cccccccccCCCCCccccchhhh
Q 037143          167 -------AALQVQWEIKWFQHVKKLM-PRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       167 -------~~l~~~~~~~~~~~v~~~~-~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                             .++.........+.++... .+.+++.+|++|+||+++|....
T Consensus       172 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTC
T ss_pred             CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHH
Confidence                   1122111111111222211 23346678888888888887654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=4e-26  Score=208.54  Aligned_cols=175  Identities=13%  Similarity=0.011  Sum_probs=131.5

Q ss_pred             HHHHHHHcCCCCCCccc-----ccCCCCCcccccccCC---CcccccccCCCCCchhhhhh--------hccCCCCcHHH
Q 037143           17 QVLNELVDHRNPDQYKY-----VYNGQDPRISTFGQDV---NAFTARETPLDPSTYKKKNA--------RRSRRKETPIL   80 (382)
Q Consensus        17 eiv~~Ll~~~~~~~~~~-----~~~G~TPLh~A~~~~~---~~~~~v~~Ll~~~~~~~~~~--------~~~~~g~tpLh   80 (382)
                      +++++|+++  +.+.+.     |.+|+||||+|+  ..   ++.+++++|++.+++....+        ..|..|+||||
T Consensus        20 ~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~--~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~   95 (256)
T 2etb_A           20 GLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAV--LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALH   95 (256)
T ss_dssp             THHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHH--HTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHH
T ss_pred             HHHHHHHHc--CCCcccccccCCCCCCCHHHHHH--HccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHH
Confidence            477888888  666554     667999999999  66   99999999999876541111        23467999999


Q ss_pred             HHHHcCcHHHHHHHhhhCCCCccccCCC-------------CCcHHHHHHHcCCHHHHHHHHh---CCCccccccccccC
Q 037143           81 VAAKMGVTEMVKKILDTFPVAMWDLDPA-------------EKNILLLAIENRRTSVYNLLLS---RKALGQTIFWQVDN  144 (382)
Q Consensus        81 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-------------G~t~Lh~A~~~g~~~iv~~Ll~---~~~~~~~~~~~~D~  144 (382)
                      +|+..|+.+++++|++.+++ ++.+|..             |+||||+|+..|+.+++++|++   .|    +++|.+|.
T Consensus        96 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g----a~~n~~d~  170 (256)
T 2etb_A           96 IAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP----ASLEATDS  170 (256)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC----CCTTCCCT
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC----CCcCccCC
Confidence            99999999999999999887 5667765             9999999999999999999999   77    79999999


Q ss_pred             CCCCHHHHHHhhC--CCCccccCcchhhhHHHHHHHHHHHhhccc----cccccccCCCCCccccchhhh
Q 037143          145 QGNSALHLAAKYG--DHLPLLFPGAALQVQWEIKWFQHVKKLMPR----HFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       145 ~G~TpLH~A~~~g--~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~----~~~~~~N~~G~Tpldla~~~~  208 (382)
                      +|+||||+|+..+  +.+...+      ...-+++  .++.....    ...+.+|++|.||+++|.+..
T Consensus       171 ~g~TpLh~A~~~~~~~~~~~~~------~~~iv~~--Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  232 (256)
T 2etb_A          171 LGNTVLHALVMIADNSPENSAL------VIHMYDG--LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG  232 (256)
T ss_dssp             TSCCHHHHHHHHCCSCHHHHHH------HHHHHHH--HHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcccCCchhhHH------HHHHHHH--HHHcCCCcccccccccccCCCCCCHHHHHHHhC
Confidence            9999999999944  4320000      0000011  11111111    112689999999999998763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=6.2e-26  Score=191.11  Aligned_cols=137  Identities=17%  Similarity=0.171  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ...+++++|+++  +.+.+.+..|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.+++++
T Consensus        13 g~~~~v~~Ll~~--g~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~   85 (153)
T 1awc_B           13 GQDDEVRILMAN--GAPFTTDWLGTSPLHLAA--QYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASEGHANIVEV   85 (153)
T ss_dssp             TCHHHHHHHHHH--TCCCCCCTTCCCHHHHHH--HHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHc--CCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcChHHHHHH
Confidence            457899999999  566667777999999999  779999999999998876   7778899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |++.+++ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.+++
T Consensus        86 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~i~  149 (153)
T 1awc_B           86 LLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYG----ADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCCCHHHHHHHcCCHHHH
Confidence            9999887 6788999999999999999999999999998    79999999999999999999986554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=1.6e-25  Score=201.87  Aligned_cols=166  Identities=17%  Similarity=0.086  Sum_probs=90.3

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCC---CccccCCCCC
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPV---AMWDLDPAEK  110 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~G~  110 (382)
                      |..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.++++.|++.++.   .++..|..|+
T Consensus        43 ~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~  117 (241)
T 1k1a_A           43 NNLRQTPLHLAV--ITTLPSVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL  117 (241)
T ss_dssp             CTTSCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSC
T ss_pred             cccCCCHHHHHH--HcCCHHHHHHHHHcCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCC
Confidence            334666666666  456666666666665544   44455566666666666666666666665541   2444555666


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCcccccccccc-CCCCCHHHHHHhhCCCCcccc---Cc-----------chhhhHHHH
Q 037143          111 NILLLAIENRRTSVYNLLLSRKALGQTIFWQVD-NQGNSALHLAAKYGDHLPLLF---PG-----------AALQVQWEI  175 (382)
Q Consensus       111 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpLH~A~~~g~~~~~~~---~~-----------~~l~~~~~~  175 (382)
                      ||||+|+..|+.+++++|++.+    .+++.+| .+|+||||+|+..|+.++++.   .|           .++......
T Consensus       118 t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          118 TALHVAVNTECQETVQLLLERG----ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR  193 (241)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcC----CCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            6666666666666666666655    4555555 556666666666555444331   01           111111111


Q ss_pred             HHHHHHHhhc-cccccccccCCCCCccccchhhh
Q 037143          176 KWFQHVKKLM-PRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       176 ~~~~~v~~~~-~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                      ...+.++..+ .+.+++.+|++|+||+++|.+..
T Consensus       194 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  227 (241)
T 1k1a_A          194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR  227 (241)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             CCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcC
Confidence            1111111111 22346788999999999987653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=8.1e-26  Score=197.59  Aligned_cols=148  Identities=14%  Similarity=0.060  Sum_probs=128.8

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcH
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI  112 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~  112 (382)
                      .|..|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.+++++|++.+++ ++..|..|+||
T Consensus        31 ~d~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  104 (192)
T 2rfm_A           31 RDSYNRTPLMVAC--MLGMENAIDKLVENFDKL---EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTP  104 (192)
T ss_dssp             CCTTCCCHHHHHH--HHTCGGGHHHHHHHHCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCH
T ss_pred             cCCCCCCHHHHHH--HcCCHHHHHHHHHhcccc---ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            4667999999999  779999999999987665   67788899999999999999999999999887 67789999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhcccccccc
Q 037143          113 LLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTR  192 (382)
Q Consensus       113 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~  192 (382)
                      ||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++.               .++.   +..++.
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~~---ga~~~~  162 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHG----ANVNDRNLEGETPLIVASKYGRSEIVKK---------------LLEL---GADISA  162 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT----CCSSCCCTTCCCHHHHHHHHTCHHHHHH---------------HHHT---TCCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHHC---CCCCCC
Confidence            99999999999999999998    7999999999999999999998665421               1222   234668


Q ss_pred             ccCCCCCccccchhhh
Q 037143          193 YNDDGKTPDEVFTESH  208 (382)
Q Consensus       193 ~N~~G~Tpldla~~~~  208 (382)
                      +|.+|.||+++|....
T Consensus       163 ~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          163 RDLTGLTAEASARIFG  178 (192)
T ss_dssp             BCTTSCBHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHhC
Confidence            9999999999997653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.92  E-value=3.5e-26  Score=217.33  Aligned_cols=169  Identities=13%  Similarity=0.054  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHcCCCCCCccc--ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCc---H
Q 037143           14 WAIQVLNELVDHRNPDQYKY--VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGV---T   88 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~--~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~---~   88 (382)
                      ...+++++|+++  +.+.+.  |.+|+||||+|+  ..++.+++++|++.|++.   +.+|..|+||||+|+..|+   .
T Consensus       108 ~~~~~~~~l~~~--g~dvn~~~d~~g~TpLh~Aa--~~g~~~~v~~Ll~~Gad~---n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          108 LLQEVNDAFPNT--QLNLNIPVDEHGNTPLHWLT--SIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             HHHHHHHHCTTS--CCCSCSCCSTTCCCHHHHHH--HTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             hHHHHHHHHHhc--CCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHhcccccH
Confidence            345788888888  666665  566999999999  789999999999999887   7889999999999999999   6


Q ss_pred             HHHHHHhhhCCCCccccCCCCCcHHHHHHH----cCCHHHHHHHHhCCCcc-----------------------------
Q 037143           89 EMVKKILDTFPVAMWDLDPAEKNILLLAIE----NRRTSVYNLLLSRKALG-----------------------------  135 (382)
Q Consensus        89 ~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~----~g~~~iv~~Ll~~~~~~-----------------------------  135 (382)
                      ++++.|++.....++.+|..|+||||+|+.    .|+.+++++|++.+...                             
T Consensus       181 ~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t  260 (327)
T 1sw6_A          181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD  260 (327)
T ss_dssp             TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------C
T ss_pred             HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCC
Confidence            888888887644578899999999999999    89999999998763100                             


Q ss_pred             ------------ccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCcccc
Q 037143          136 ------------QTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEV  203 (382)
Q Consensus       136 ------------~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldl  203 (382)
                                  +.++|.+|.+|+||||+|+..|+.+++++               .++.   +.+++.+|++|+||+++
T Consensus       261 ~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~---------------Ll~~---Gad~~~~d~~G~TpL~~  322 (327)
T 1sw6_A          261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA---------------LLDY---GADPFIANKSGLRPVDF  322 (327)
T ss_dssp             HHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHH---------------HHHT---TCCTTCCCTTSCCGGGG
T ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHHc---CCCCcccCCCCCCHHHH
Confidence                        00588899999999999999999666432               2222   33467999999999999


Q ss_pred             chhh
Q 037143          204 FTES  207 (382)
Q Consensus       204 a~~~  207 (382)
                      |.+.
T Consensus       323 A~~~  326 (327)
T 1sw6_A          323 GAGL  326 (327)
T ss_dssp             TCC-
T ss_pred             HHhc
Confidence            8753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=8.3e-26  Score=202.75  Aligned_cols=166  Identities=16%  Similarity=0.080  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ...++++.|++.++......|..|+||||+|+  ..++.+++++|++.+.+.   +..|..|+||||+|+..|+.+++++
T Consensus        17 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~   91 (231)
T 3aji_A           17 GKLDELKERILADKSLATRTDQDSRTALHWAC--SAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAASAGXDEIVKA   91 (231)
T ss_dssp             TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH--HHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHhchhhhhcCCCCCCCHHHHHH--HcCcHHHHHHHHHhCCCC---CCcCCCCCCHHHHHHHcCHHHHHHH
Confidence            45789999998855554556777999999999  779999999999998776   7778899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHH
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQW  173 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~  173 (382)
                      |++.+++ ++.+|..|+||||+|+..|+.+++++|++.+    .+++.+|..|+||||+|+..|+.++++.         
T Consensus        92 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------  157 (231)
T 3aji_A           92 LLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGG----ANPDAKDHYDATAMHRAAAKGNLKMVHI---------  157 (231)
T ss_dssp             HHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHH---------
T ss_pred             HHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCcHHHHHHHcCCHHHHHH---------
Confidence            9999887 6778999999999999999999999999998    7899999999999999999998655421         


Q ss_pred             HHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          174 EIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       174 ~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                            .++   .+.+++.+|.+|.||+++|...
T Consensus       158 ------Ll~---~g~~~~~~~~~g~t~L~~A~~~  182 (231)
T 3aji_A          158 ------LLF---YKASTNIQDTEGNTPLHLACDE  182 (231)
T ss_dssp             ------HHH---TTCCSCCCCTTSCCHHHHHHHT
T ss_pred             ------HHh---cCCCccccCCCCCCHHHHHHHC
Confidence                  122   2234678899999999998765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=7e-26  Score=204.38  Aligned_cols=165  Identities=18%  Similarity=0.105  Sum_probs=135.0

Q ss_pred             HHHHHHHHcCCCC--CCcc-cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           16 IQVLNELVDHRNP--DQYK-YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        16 ~eiv~~Ll~~~~~--~~~~-~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      .++++.|++..+.  .+.+ .+..|+||||+|+  ..++.+++++|++.|++.   +..|..|+||||+|+..|+.++++
T Consensus        21 ~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~   95 (236)
T 1ikn_D           21 KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV--ITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVG   95 (236)
T ss_dssp             SSSSSCCCC-----CCCCCCCCTTCCCHHHHHH--HTTCHHHHHCCCSCCCCS---CCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             hhHHHHHHHHhhccHHHhhccCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHH
Confidence            4667788877432  2344 4556999999999  779999999999998876   777889999999999999999999


Q ss_pred             HHhhhCCC-----CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccC-CCCCHHHHHHhhCCCCccccCc
Q 037143           93 KILDTFPV-----AMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDN-QGNSALHLAAKYGDHLPLLFPG  166 (382)
Q Consensus        93 ~Ll~~~~~-----~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~-~G~TpLH~A~~~g~~~~~~~~~  166 (382)
                      +|++.+++     ..+..|..|+||||+|+..|+.+++++|++.|    ++++.+|. +|+||||+|+..|+.++++.  
T Consensus        96 ~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~~g~tpL~~A~~~~~~~~v~~--  169 (236)
T 1ikn_D           96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG----ADVNAQEPCNGRTALHLAVDLQNPDLVSL--  169 (236)
T ss_dssp             HHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHH--
T ss_pred             HHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCCHHHHHHHcCCHHHHHH--
Confidence            99998753     35667889999999999999999999999998    79999998 99999999999998665431  


Q ss_pred             chhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          167 AALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       167 ~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                                   .++.   +.+++.+|..|.||+++|...
T Consensus       170 -------------Ll~~---ga~~~~~~~~g~tpl~~A~~~  194 (236)
T 1ikn_D          170 -------------LLKC---GADVNRVTYQGYSPYQLTWGR  194 (236)
T ss_dssp             -------------HHTT---TCCSCCCCTTCCCGGGGCTTS
T ss_pred             -------------HHHc---CCCCCcccCCCCCHHHHHHcc
Confidence                         1222   334678999999999999765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.92  E-value=3e-25  Score=210.74  Aligned_cols=91  Identities=19%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      |..|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.+++++|++.+++ ++..|..|+|||
T Consensus        55 d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L  128 (351)
T 3utm_A           55 DGRKSTPLHLAA--GYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPL  128 (351)
T ss_dssp             STTCCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHH
T ss_pred             CCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            333555555555  345555555555544443   44444455555555555555555555554443 334444555555


Q ss_pred             HHHHHcCCHHHHHHHHh
Q 037143          114 LLAIENRRTSVYNLLLS  130 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~  130 (382)
                      |+|+..|+.+++++|++
T Consensus       129 ~~A~~~~~~~~v~~Ll~  145 (351)
T 3utm_A          129 HEAASKNRVEVCSLLLS  145 (351)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH
Confidence            55555555555554444

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.92  E-value=5.5e-26  Score=209.58  Aligned_cols=166  Identities=15%  Similarity=0.057  Sum_probs=137.6

Q ss_pred             HHHHHHHHHcCCCCCC-cc-cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           15 AIQVLNELVDHRNPDQ-YK-YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~-~~-~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ..+++++|++++.... .+ .+..|+||||+|+  ..++.+++++|++.|++.   +..|..|+||||+|+..|+.++++
T Consensus        21 ~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~~~~~~v~   95 (282)
T 1oy3_D           21 HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA--ILGEASTVEKLYAAGAGV---LVAERGGHTALHLACRVRAHTCAC   95 (282)
T ss_dssp             CHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH--HHTCHHHHHHHHHTTCCS---SCCCTTSCCHHHHHTTTTCHHHHH
T ss_pred             CHHHHHHHHhcCCCcccccccCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCcchhH
Confidence            4689999998843321 33 4556999999999  779999999999999876   777889999999999999999999


Q ss_pred             HHhhhCCC----------------------------------------------CccccCCCCCcHHHHHHHcCCHHHHH
Q 037143           93 KILDTFPV----------------------------------------------AMWDLDPAEKNILLLAIENRRTSVYN  126 (382)
Q Consensus        93 ~Ll~~~~~----------------------------------------------~~~~~d~~G~t~Lh~A~~~g~~~iv~  126 (382)
                      +|++.+++                                              .++.+|..|+||||+|+..|+.++++
T Consensus        96 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  175 (282)
T 1oy3_D           96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR  175 (282)
T ss_dssp             HHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHH
Confidence            99987643                                              14567889999999999999999999


Q ss_pred             HHHhCCCccccccccccCC-CCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccch
Q 037143          127 LLLSRKALGQTIFWQVDNQ-GNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFT  205 (382)
Q Consensus       127 ~Ll~~~~~~~~~~~~~D~~-G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~  205 (382)
                      +|++.|    ++++.+|.. |+||||+|+..|+.+++++               .++.   +.+++.+|.+|.||+++|.
T Consensus       176 ~Ll~~g----~~~~~~~~~~g~tpL~~A~~~~~~~~v~~---------------Ll~~---gad~~~~d~~g~tpL~~A~  233 (282)
T 1oy3_D          176 LLRDAG----ADLNKPEPTCGRTPLHLAVEAQAASVLEL---------------LLKA---GADPTARMYGGRTPLGSAL  233 (282)
T ss_dssp             HHHHHT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHcC----CCCCCCCCCCCcCHHHHHHHcCCHHHHHH---------------HHHc---CCCCcccccCCCCHHHHHH
Confidence            999998    789999865 9999999999998665432               2222   3346789999999999997


Q ss_pred             hh
Q 037143          206 ES  207 (382)
Q Consensus       206 ~~  207 (382)
                      ..
T Consensus       234 ~~  235 (282)
T 1oy3_D          234 LR  235 (282)
T ss_dssp             TS
T ss_pred             Hc
Confidence            65

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.91  E-value=2e-25  Score=190.59  Aligned_cols=144  Identities=15%  Similarity=0.051  Sum_probs=110.8

Q ss_pred             CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHH
Q 037143           36 NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLL  115 (382)
Q Consensus        36 ~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~  115 (382)
                      .|.||||.|+  ..|+.++++.|++.+.+.   +..|..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||+
T Consensus         2 ~~~t~L~~A~--~~g~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   75 (167)
T 3v31_A            2 ANSLSVHQLA--AQGEMLYLATRIEQENVI---NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSL   75 (167)
T ss_dssp             TTCCCHHHHH--HTTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             CCcchHHHHH--HCCCHHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHH
Confidence            4788888888  678888888888777654   66777888888888888888888888888766 56678888888888


Q ss_pred             HHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccC
Q 037143          116 AIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYND  195 (382)
Q Consensus       116 A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~  195 (382)
                      |+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++.               .++.   +.+++.+|.
T Consensus        76 A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~~---g~~~~~~~~  133 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCG----VDVNEYDWNGGTPLLYAVHGNHVKCVKM---------------LLES---GADPTIETD  133 (167)
T ss_dssp             HHHHTCHHHHHHHHHHT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCT
T ss_pred             HHHcCCHHHHHHHHHCC----CCCCcCCCCCCCHHHHHHHcCCHHHHHH---------------HHHc---CCCCCCcCC
Confidence            88888888888888887    6888888888888888888887554321               1221   233457788


Q ss_pred             CCCCccccchhh
Q 037143          196 DGKTPDEVFTES  207 (382)
Q Consensus       196 ~G~Tpldla~~~  207 (382)
                      +|.||+++|...
T Consensus       134 ~g~t~l~~A~~~  145 (167)
T 3v31_A          134 SGYNSMDLAVAL  145 (167)
T ss_dssp             TSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHc
Confidence            888888888665

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.91  E-value=3.3e-25  Score=199.66  Aligned_cols=166  Identities=17%  Similarity=0.126  Sum_probs=131.6

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcH
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI  112 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~  112 (382)
                      .|.+|+||||+|+  ..|+.+++++|++.+.+.   +..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||
T Consensus         7 ~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~   80 (237)
T 3b7b_A            7 EHQNKRSPLHAAA--EAGHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTC   80 (237)
T ss_dssp             SSCCSCCHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCH
T ss_pred             ccCCCCCHHHHHH--HcCcHHHHHHHHHcCCCc---CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcH
Confidence            4556999999999  779999999999998876   77788999999999999999999999998877 67789999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcccc---Ccc-----------hhhhHHHHHHH
Q 037143          113 LLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLF---PGA-----------ALQVQWEIKWF  178 (382)
Q Consensus       113 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~---~~~-----------~l~~~~~~~~~  178 (382)
                      ||+|+..|+.+++++|++.+.   .+++.+|..|.||||+|+..|+.++++.   .|+           ++.........
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQ---MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTC---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred             HHHHHHcCCHHHHHHHHhCCC---CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence            999999999999999999983   6899999999999999999999776542   111           22221111112


Q ss_pred             HHHHhhc-cccccccccCCCCCccccchhh
Q 037143          179 QHVKKLM-PRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       179 ~~v~~~~-~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +.++... ...+++.+|.+|.||+++|...
T Consensus       158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  187 (237)
T 3b7b_A          158 DIAEILLAAKCDLHAVNIHGDSPLHIAARE  187 (237)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHh
Confidence            2222222 2234677888999999988765

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=1.8e-25  Score=190.48  Aligned_cols=153  Identities=17%  Similarity=0.108  Sum_probs=127.6

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      +++|.||||.|+  ..++.++++.|++.+..  ..+..+..|+||||+|+..|+.+++++|++.+.+ ++.+|.+|+|||
T Consensus         5 ~~~~~~~l~~A~--~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   79 (165)
T 3twr_A            5 NSEADRQLLEAA--KAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPL   79 (165)
T ss_dssp             -CHHHHHHHHHH--HHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             cchhhHHHHHHH--HhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHH
Confidence            455899999999  78999999999986432  2255677899999999999999999999999877 678899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccc
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRY  193 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~  193 (382)
                      |+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++.               .++.   ..+++.+
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~~---ga~~~~~  137 (165)
T 3twr_A           80 HNACSYGHYEVAELLVKHG----AVVNVADLWKFTPLHEAAAKGKYEICKL---------------LLQH---GADPTKK  137 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCC
T ss_pred             HHHHHcCcHHHHHHHHhCC----CCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------HHHc---CCCCccc
Confidence            9999999999999999998    7999999999999999999998665421               1222   2345689


Q ss_pred             cCCCCCccccchhhhHHHHH
Q 037143          194 NDDGKTPDEVFTESHRDLVK  213 (382)
Q Consensus       194 N~~G~Tpldla~~~~~~l~~  213 (382)
                      |.+|.||+++|.+.+.++++
T Consensus       138 ~~~g~t~l~~a~~~~~~i~~  157 (165)
T 3twr_A          138 NRDGNTPLDLVKDGDTDIQD  157 (165)
T ss_dssp             CTTSCCTGGGSCTTCHHHHH
T ss_pred             CCCCCChhHhHhcCChHHHH
Confidence            99999999999887766544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=200.05  Aligned_cols=166  Identities=16%  Similarity=0.074  Sum_probs=117.1

Q ss_pred             HHHHHHHHHcCCCCC-------CcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCc
Q 037143           15 AIQVLNELVDHRNPD-------QYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGV   87 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~-------~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~   87 (382)
                      .+++|++||+++...       ....+..|.||||.|+. ..+...++++|++.|++.   +..|.+|+||||+||..|+
T Consensus        23 ~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~-~~~~~~~v~~Ll~~Gadv---n~~d~~G~TpLh~A~~~g~   98 (269)
T 4b93_B           23 DLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPK-CAPAQKRLAKVPASGLGV---NVTSQDGSSPLHVAALHGR   98 (269)
T ss_dssp             CHHHHHHHHTCC-----------------------------------------CCCCT---TCCCTTSCCHHHHHHHTTC
T ss_pred             CHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHH-hCCHHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCc
Confidence            478999999984322       12234559999999984 223345789999999877   8889999999999999999


Q ss_pred             HHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcc
Q 037143           88 TEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGA  167 (382)
Q Consensus        88 ~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~  167 (382)
                      .+++++|++.+++ ++..+.+|.||+|+|+..++.+++++|++.+    +++|.+|.+|+||||+|+..|+.+++++   
T Consensus        99 ~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g----~~~n~~d~~g~TpL~~A~~~g~~~~v~~---  170 (269)
T 4b93_B           99 ADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSN----AKPNKKDLSGNTPLIYACSGGHHELVAL---  170 (269)
T ss_dssp             TTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCSCCCCTTCCCHHHHHHHTTCGGGHHH---
T ss_pred             HHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHCCCHHHHHH---
Confidence            9999999999887 6778999999999999999999999999998    7999999999999999999999777532   


Q ss_pred             hhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          168 ALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       168 ~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                                  .++.   +.+++.+|.+|.||+++|...
T Consensus       171 ------------Ll~~---gadvn~~~~~g~t~Lh~A~~~  195 (269)
T 4b93_B          171 ------------LLQH---GASINASNNKGNTALHEAVIE  195 (269)
T ss_dssp             ------------HHHT---TCCTTCBCTTSCBHHHHHHHT
T ss_pred             ------------HHHC---CCCCCccccCCCcHHHHHHHc
Confidence                        2222   234678999999999998765

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=7.4e-25  Score=203.99  Aligned_cols=180  Identities=14%  Similarity=0.028  Sum_probs=137.3

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ..+++++|+++  +.+.+. |.+|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.+++++
T Consensus        71 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~A~~~~~~~~v~~  143 (285)
T 3d9h_A           71 HQLSLRNLISQ--GWAVNIITADHVSPLHEAC--LGGHLSCVKILLKHGAQV---NGVTADWHTPLFNACVSGSWDCVNL  143 (285)
T ss_dssp             CHHHHHHHHHT--TCCSCEECTTCCCHHHHHH--HTTCHHHHHHHHHTTCCS---SCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH--HCCcHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCHHHHHHH
Confidence            36899999998  555554 556999999999  779999999999988776   7778889999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcccc---Ccc---
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLF---PGA---  167 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~---~~~---  167 (382)
                      |++.+++. + .+.+|+||||+|+..|+.+++++|++.+    .+++.+|.+|+||||+|+..|+.++++.   .|+   
T Consensus       144 Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          144 LLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYG----GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN  217 (285)
T ss_dssp             HHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTT----CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC
Confidence            99988763 3 3556999999999999999999999988    6899999999999999999998776642   111   


Q ss_pred             -------hhhhHHHHHHHHHHHhhc-cccccccccCCCCCccccchhh
Q 037143          168 -------ALQVQWEIKWFQHVKKLM-PRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       168 -------~l~~~~~~~~~~~v~~~~-~~~~~~~~N~~G~Tpldla~~~  207 (382)
                             ++.........+.++..+ .+.+++.+|++|+||+++|.+.
T Consensus       218 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence                   122111111111222211 2345678999999999999844

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=7.8e-25  Score=187.58  Aligned_cols=137  Identities=17%  Similarity=0.073  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...+++++|+++  +.+.+. |..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.++++
T Consensus        25 g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~   97 (169)
T 2y1l_E           25 GRDDEVRILMAN--GADVNAEDASGWTPLHLAA--FNGHLEIVEVLLKNGADV---NAVDHAGMTPLRLAALFGHLEIVE   97 (169)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHH
Confidence            457899999999  666654 556999999999  779999999999998776   777889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      +|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.+++
T Consensus        98 ~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E           98 VLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG----ADVNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence            99999887 6778999999999999999999999999998    78999999999999999999986654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=8.8e-25  Score=215.01  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=101.4

Q ss_pred             HHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      .++++.|+++  +.+.+. +..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.+++++|
T Consensus       225 ~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~L  297 (437)
T 1n11_A          225 VEVARSLLQY--GGSANAESVQGVTPLHLAA--QEGHAEMVALLLSKQANG---NLGNKSGLTPLHLVAQEGHVPVADVL  297 (437)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHc--CCCCCCCCCCCCCHHHHHH--HCCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4556666655  333333 233666666666  456666666666665544   45555666666666666666666666


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHH
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWE  174 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~  174 (382)
                      ++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|    +++|.+|..|+||||+|+..|+.++++.          
T Consensus       298 l~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~n~~~~~g~t~L~~A~~~g~~~iv~~----------  362 (437)
T 1n11_A          298 IKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ----ADVNAKTKLGYSPLHQAAQQGHTDIVTL----------  362 (437)
T ss_dssp             HHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH----------
T ss_pred             HhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC----CCCCCCCCCCCCHHHHHHHCChHHHHHH----------
Confidence            666555 4555666666666666666666666666666    5666666666666666666666444321          


Q ss_pred             HHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          175 IKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       175 ~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                           .++.   +.+.+.+|++|+||+++|.+..
T Consensus       363 -----Ll~~---ga~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          363 -----LLKN---GASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             -----HHHT---TCCSCCCCSSSCCHHHHHHHTT
T ss_pred             -----HHHC---cCCCCCCCCCCCCHHHHHHHcC
Confidence                 1222   2345689999999999987653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=1e-24  Score=184.94  Aligned_cols=137  Identities=17%  Similarity=0.097  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...++++.|+++  +.+.+. +..|+||||+|+  . ++.+++++|++.+++.   +.+|..|+||||+|+..|+.++++
T Consensus        16 g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~--~-~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~   87 (162)
T 1ihb_A           16 GDLEQLTSLLQN--NVNVNAQNGFGRTALQVMK--L-GNPEIARRLLLRGANP---DLKDRTGFAVIHDAARAGFLDTLQ   87 (162)
T ss_dssp             TCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCC--S-SCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHhC--CCCccccCccCccHHHHHH--c-CcHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHH
Confidence            457899999998  555554 556999999998  6 9999999999998776   777889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      +|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.+.   ..++.+|.+|+||||+|+..|+.+++
T Consensus        88 ~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~~g~t~l~~A~~~~~~~~~  153 (162)
T 1ihb_A           88 TLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVV  153 (162)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC---CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccC---CCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            99999877 67889999999999999999999999999983   34799999999999999999996654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.91  E-value=2e-24  Score=185.19  Aligned_cols=150  Identities=19%  Similarity=0.117  Sum_probs=126.2

Q ss_pred             CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHH
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLA  116 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A  116 (382)
                      +.||||.|+  ..|+.++++.|++.++..  .+..|..|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|
T Consensus         2 ~~~~L~~A~--~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   76 (172)
T 3v30_A            2 DSLSIHQLA--AQGELDQLKEHLRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLA   76 (172)
T ss_dssp             --CCHHHHH--HTTCHHHHHHHHTTCSGG--GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHH
T ss_pred             chhhHHHHH--HcCCHHHHHHHHHcCccc--ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHH
Confidence            579999999  789999999999987652  267788999999999999999999999999887 677899999999999


Q ss_pred             HHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCC
Q 037143          117 IENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDD  196 (382)
Q Consensus       117 ~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~  196 (382)
                      +..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++.               .++.   +.+++.+|.+
T Consensus        77 ~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~~---ga~~~~~~~~  134 (172)
T 3v30_A           77 STGGYTDIVGLLLERD----VDINIYDWNGGTPLLYAVRGNHVKCVEA---------------LLAR---GADLTTEADS  134 (172)
T ss_dssp             HHTTCHHHHHHHHTTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCTT
T ss_pred             HHCCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHHc---CCCccccCCC
Confidence            9999999999999998    7999999999999999999998665431               1222   2345689999


Q ss_pred             CCCccccchhhh-HHHHH
Q 037143          197 GKTPDEVFTESH-RDLVK  213 (382)
Q Consensus       197 G~Tpldla~~~~-~~l~~  213 (382)
                      |.||+++|.... .+..+
T Consensus       135 g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A          135 GYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             SCCHHHHHHHHTCHHHHH
T ss_pred             CCCHHHHHHHhCcHHHHH
Confidence            999999997753 34333

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.90  E-value=3.9e-25  Score=205.05  Aligned_cols=166  Identities=18%  Similarity=0.171  Sum_probs=135.7

Q ss_pred             HHHHHHHHHcCCCCCCcc-cccCCCCCcccccccCCCcccccccCCCCCc-hhhhhhhccCCCCcHHHHHH-----HcCc
Q 037143           15 AIQVLNELVDHRNPDQYK-YVYNGQDPRISTFGQDVNAFTARETPLDPST-YKKKNARRSRRKETPILVAA-----KMGV   87 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~-~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~g~tpLh~Aa-----~~g~   87 (382)
                      .++.++.+++...+...+ .|.+|+||||+|+  ..++.+++++|++.++ +.   +..|..|.||||+|+     ..|+
T Consensus        88 ~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~--~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpL~~a~~~~~~~~~~  162 (276)
T 4hbd_A           88 HLVTFRAMSARLLDYVVNIADSNGNTALHYSV--SHANFPVVQQLLDSGVCKV---DKQNRAGYSPIMLTALATLKTQDD  162 (276)
T ss_dssp             HHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHHGGGCCCCSHHH
T ss_pred             HHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHH--HCCCHHHHHHHHHCCCCcC---CCCCCCCCCHHHHHHHHHhhhhhh
Confidence            345566665542121133 4566999999999  7899999999999987 54   778889999999999     7799


Q ss_pred             HHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcc
Q 037143           88 TEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGA  167 (382)
Q Consensus        88 ~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~  167 (382)
                      .++++.|++.+.+ .+..|..|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+..|+.++++.   
T Consensus       163 ~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g----ad~n~~d~~G~TpLh~A~~~g~~~iv~~---  234 (276)
T 4hbd_A          163 IETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACE----ADVNVQDDDGSTALMCACEHGHKEIAGL---  234 (276)
T ss_dssp             HHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHHHH---
T ss_pred             HHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCC----CCCCCCCCCCCCHHHHHHHCCCHHHHHH---
Confidence            9999999999865 5677889999999999999999999999998    7999999999999999999999665431   


Q ss_pred             hhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          168 ALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       168 ~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                                  .++  ..+.+++.+|++|.||+++|.+.
T Consensus       235 ------------Ll~--~~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          235 ------------LLA--VPSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             ------------HHT--STTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ------------HHh--cCCCCCcCcCCCCCCHHHHHHHc
Confidence                        111  13445678999999999999876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.90  E-value=6.3e-25  Score=211.01  Aligned_cols=170  Identities=14%  Similarity=0.070  Sum_probs=105.1

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhh--------------------------
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKK--------------------------   67 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~--------------------------   67 (382)
                      ..+++++|+++  +.+.+. |..|+||||+|+  ..++.+++++|++.+++...                          
T Consensus        32 ~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  107 (364)
T 3ljn_A           32 QTDEVRRLIET--GVSPTIQNRFGCTALHLAC--KFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGA  107 (364)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH--HHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHc--CCCccccCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            36788888887  555554 445888888888  66788888888776653210                          


Q ss_pred             ------hhh-----------------ccCCCCcHHHHHHHcC--cHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCH
Q 037143           68 ------NAR-----------------RSRRKETPILVAAKMG--VTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRT  122 (382)
Q Consensus        68 ------~~~-----------------~~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~  122 (382)
                            .+.                 .|..|.||||+|+..|  +.+++++|++.+.+ ++.+|..|+||||+|+..|+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~  186 (364)
T 3ljn_A          108 KERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNR  186 (364)
T ss_dssp             HHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCH
Confidence                  011                 4445666666666666  66666666666554 455566666666666666666


Q ss_pred             HHHHHHHhCCCc-cccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCcc
Q 037143          123 SVYNLLLSRKAL-GQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPD  201 (382)
Q Consensus       123 ~iv~~Ll~~~~~-~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpl  201 (382)
                      +++++|++.+.. ...++|.+|.+|+||||+|+..|+.+++++               .++   .+.+++.+|++|.||+
T Consensus       187 ~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~---------------Ll~---~gad~~~~d~~g~tpL  248 (364)
T 3ljn_A          187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR---------------FVE---MGIDVNMEDNEHTVPL  248 (364)
T ss_dssp             HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHH---------------HHT---TTCCTTCCCTTSCCHH
T ss_pred             HHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHH---------------HHH---cCCCCCCCCCCCCCHH
Confidence            666666665510 011266666666666666666665443321               122   2334678999999999


Q ss_pred             ccchhh
Q 037143          202 EVFTES  207 (382)
Q Consensus       202 dla~~~  207 (382)
                      ++|...
T Consensus       249 ~~A~~~  254 (364)
T 3ljn_A          249 YLSVRA  254 (364)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999775

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=9.6e-25  Score=199.64  Aligned_cols=176  Identities=14%  Similarity=0.101  Sum_probs=128.2

Q ss_pred             HHHHHHcCCCCCCccc-----ccCCCCCccccccc-CCCcccccccCCCCCchhhh--------hhhccCCCCcHHHHHH
Q 037143           18 VLNELVDHRNPDQYKY-----VYNGQDPRISTFGQ-DVNAFTARETPLDPSTYKKK--------NARRSRRKETPILVAA   83 (382)
Q Consensus        18 iv~~Ll~~~~~~~~~~-----~~~G~TPLh~A~~~-~~~~~~~v~~Ll~~~~~~~~--------~~~~~~~g~tpLh~Aa   83 (382)
                      ++++|+++  +.+.+.     |..|+||||+|+.. ..++.+++++|++.+++...        .+..|..|+||||+||
T Consensus        24 ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~  101 (260)
T 3jxi_A           24 LLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI  101 (260)
T ss_dssp             HHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHH
T ss_pred             HHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHH
Confidence            56666667  444432     25599999988732 46899999999998754211        1333447999999999


Q ss_pred             HcCcHHHHHHHhhhCCCCccccC--------------CCCCcHHHHHHHcCCHHHHHHHHh---CCCccccccccccCCC
Q 037143           84 KMGVTEMVKKILDTFPVAMWDLD--------------PAEKNILLLAIENRRTSVYNLLLS---RKALGQTIFWQVDNQG  146 (382)
Q Consensus        84 ~~g~~~~v~~Ll~~~~~~~~~~d--------------~~G~t~Lh~A~~~g~~~iv~~Ll~---~~~~~~~~~~~~D~~G  146 (382)
                      ..|+.+++++|++.+++ ++.+|              ..|+||||+|+..|+.+++++|++   .|    +++|.+|.+|
T Consensus       102 ~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g----a~~~~~d~~g  176 (260)
T 3jxi_A          102 ERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ----ADLRRQDSRG  176 (260)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC----CCTTCCCTTS
T ss_pred             HcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC----CCCcccCCCC
Confidence            99999999999999887 56666              689999999999999999999999   77    7999999999


Q ss_pred             CCHHHHHHhhCCCCccccCcchhhhHHH-HHHHHHHHhhc----cccccccccCCCCCccccchhh
Q 037143          147 NSALHLAAKYGDHLPLLFPGAALQVQWE-IKWFQHVKKLM----PRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       147 ~TpLH~A~~~g~~~~~~~~~~~l~~~~~-~~~~~~v~~~~----~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +||||+|+..++...-     ......+ +++  .++...    .....+.+|++|.||+++|.+.
T Consensus       177 ~TpLh~A~~~~~~~~~-----~~~~~~~~v~~--Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          177 NTVLHALVAIADNTRE-----NTKFVTKMYDL--LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             CCHHHHHHHHCCSSHH-----HHHHHHHHHHH--HHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             CcHHHHHHHhccCchh-----HHHHHHHHHHH--HHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence            9999999998873210     0000000 011  111111    1112368999999999999875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=7.1e-25  Score=186.74  Aligned_cols=137  Identities=16%  Similarity=0.102  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ...++++.|++..+......+..|+||||+|+  ..++.+++++|++.+.+.   +.+|..|+||||+|+..|+.+++++
T Consensus        19 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~   93 (165)
T 3twr_A           19 GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVSVVEYLLQHGADV---HAKDKGGLVPLHNACSYGHYEVAEL   93 (165)
T ss_dssp             TCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCccccccCCCCHHHHHH--HcChHHHHHHHHhcCCCC---CccCCCCCCHHHHHHHcCcHHHHHH
Confidence            34789999999755555556667999999999  789999999999998876   7788899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLP  161 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~  161 (382)
                      |++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|.. |+.++
T Consensus        94 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~a~~-~~~~i  155 (165)
T 3twr_A           94 LVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHG----ADPTKKNRDGNTPLDLVKD-GDTDI  155 (165)
T ss_dssp             HHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCTGGGSCT-TCHHH
T ss_pred             HHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCcccCCCCCChhHhHhc-CChHH
Confidence            9999887 6778999999999999999999999999998    7999999999999999876 66444

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.90  E-value=3e-24  Score=180.93  Aligned_cols=137  Identities=15%  Similarity=0.129  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ...++++.|+++.+......+..|+||||+ +  ..++.+++++|++.+++.   +.+|..|+||||+|+..|+.+++++
T Consensus        13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~   86 (156)
T 1bd8_A           13 GDVQEVRRLLHRELVHPDALNRFGKTALQV-M--MFGSTAIALELLKQGASP---NVQDTSGTSPVHDAARTGFLDTLKV   86 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-S--CTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHhhCcCccccCCCCCcHHHH-H--HcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            346899999988222444456679999999 7  679999999999998876   7788899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |++.+++ ++.+|.+|+||||+|+..|+.+++++|++.     ++++.+|.+|+||||+|+..|+.+++
T Consensus        87 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~~~~~~~~~g~t~l~~A~~~~~~~~v  149 (156)
T 1bd8_A           87 LVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-----SDLHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             HHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----SCTTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             HHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----cCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            9999877 678899999999999999999999999987     38899999999999999999986654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.90  E-value=2.5e-24  Score=193.96  Aligned_cols=170  Identities=16%  Similarity=0.122  Sum_probs=129.5

Q ss_pred             ccccCCCCCcccccccCCCcccccccCCC----CCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCC
Q 037143           32 KYVYNGQDPRISTFGQDVNAFTARETPLD----PSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDP  107 (382)
Q Consensus        32 ~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~  107 (382)
                      ..|.+|+||||+|+  ..|+.++++.|++    .+.+.   +..|..|.||||+|+..|+.+++++|++.+.+ ++..|.
T Consensus         4 ~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~   77 (241)
T 1k1a_A            4 RADEDGDTPLHIAV--VQGNLPAVHRLVNLFQQGGREL---DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDR   77 (241)
T ss_dssp             ---CTTCCHHHHHH--HTTCHHHHHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred             ccCCCCCcHHHHHH--HcCCHHHHHHHHHHHHhcCCCC---CcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCC
Confidence            35677999999999  7899999999886    55544   67788899999999999999999999999877 677899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcccc---Cc------------chhhhH
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLF---PG------------AALQVQ  172 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~---~~------------~~l~~~  172 (382)
                      .|+||||+|+..|+.+++++|++.+.....+++.+|.+|+||||+|+..|+.++++.   .|            .++...
T Consensus        78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA  157 (241)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Confidence            999999999999999999999998843334889999999999999999999776542   11            112211


Q ss_pred             HHHHHHHHHHhhc-cccccccccCCCCCccccchhh
Q 037143          173 WEIKWFQHVKKLM-PRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       173 ~~~~~~~~v~~~~-~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      ......+.++... .+.+++.+|.+|.||+++|...
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR  193 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            1111122222211 2334678889999999998764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=1.9e-24  Score=184.51  Aligned_cols=137  Identities=17%  Similarity=0.140  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHcCCCCCCcc-cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYK-YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~-~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...++++.|++.  +.+.+ .|..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.++++
T Consensus        14 g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~   86 (167)
T 3v31_A           14 GEMLYLATRIEQ--ENVINHTDEEGFTPLMWAA--AHGQIAVVEFLLQNGADP---QLLGKGRESALSLACSKGYTDIVK   86 (167)
T ss_dssp             TCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHH--HCCCHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHcCCHHHHH
Confidence            347899999998  55555 4556999999999  779999999999998776   777889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      +|++.+++ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.+++
T Consensus        87 ~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A           87 MLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESG----ADPTIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             HHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            99999887 6788999999999999999999999999998    79999999999999999999996654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=1.1e-24  Score=196.57  Aligned_cols=168  Identities=13%  Similarity=0.067  Sum_probs=137.1

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchh---hhhhhccCCCCcHHHHHHHcCcHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYK---KKNARRSRRKETPILVAAKMGVTEM   90 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~g~tpLh~Aa~~g~~~~   90 (382)
                      ..+++++|+++  +.+.+. |..|+||||+|+  ..++.+++++|++.+++.   ...+..+..|.||||+|+..|+.++
T Consensus        57 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  132 (236)
T 1ikn_D           57 QPEIAEALLGA--GCDPELRDFRGNTPLHLAC--EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI  132 (236)
T ss_dssp             CHHHHHCCCSC--CCCSCCCCTTCCCHHHHHH--HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHH
Confidence            46899999998  666665 556999999999  779999999999887541   1136667889999999999999999


Q ss_pred             HHHHhhhCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchh
Q 037143           91 VKKILDTFPVAMWDLDP-AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAAL  169 (382)
Q Consensus        91 v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l  169 (382)
                      +++|++.+++ ++.+|. .|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.++++.     
T Consensus       133 v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~~~~~~-----  202 (236)
T 1ikn_D          133 VELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG----ADVNRVTYQGYSPYQLTWGRPSTRIQQQ-----  202 (236)
T ss_dssp             HHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT----CCSCCCCTTCCCGGGGCTTSSCHHHHHH-----
T ss_pred             HHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCcccCCCCCHHHHHHccCchHHHHH-----
Confidence            9999999988 566776 9999999999999999999999998    7999999999999999999998665432     


Q ss_pred             hhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          170 QVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       170 ~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                                .++... ......+|.+|.||.+...+.
T Consensus       203 ----------Ll~~ga-~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          203 ----------LGQLTL-ENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             ----------HHTTSC-GGGSSCCCCCTTTCCCCC---
T ss_pred             ----------HHHcch-hhhhcCCccchHHHHhhhccc
Confidence                      122221 122457899999999987654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.90  E-value=3.6e-24  Score=185.04  Aligned_cols=147  Identities=18%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHH
Q 037143           36 NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLL  115 (382)
Q Consensus        36 ~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~  115 (382)
                      ++.+|||.|+  ..++.++++.|++.+...  .+..|..|+||||+||..|+.+++++|++.+.+ ++.+|..|+||||+
T Consensus         4 ~~~~~l~~A~--~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   78 (179)
T 3f6q_A            4 EFMDDIFTQC--REGNAVAVRLWLDNTEND--LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHL   78 (179)
T ss_dssp             ---CCHHHHH--HHTCHHHHHHHHHCTTSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             HHHHHHHHHH--HcCCHHHHHHHHhcCccc--ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHH
Confidence            4789999999  779999999988774321  266788899999999999999999999998877 67788999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccC
Q 037143          116 AIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYND  195 (382)
Q Consensus       116 A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~  195 (382)
                      |+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++.               .++.   +.+++.+|.
T Consensus        79 A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~t~L~~A~~~~~~~~v~~---------------Ll~~---ga~~~~~~~  136 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYK----ADINAVNEHGNVPLHYACFWGQDQVAED---------------LVAN---GALVSICNK  136 (179)
T ss_dssp             HHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHT---TCCSSBCCT
T ss_pred             HHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHHHcCCHHHHHH---------------HHHC---CCCcchhcc
Confidence            99999999999999998    7899999999999999999988655421               1222   234568899


Q ss_pred             CCCCccccchhhhH
Q 037143          196 DGKTPDEVFTESHR  209 (382)
Q Consensus       196 ~G~Tpldla~~~~~  209 (382)
                      +|.||+++|.+...
T Consensus       137 ~g~tpl~~A~~~~~  150 (179)
T 3f6q_A          137 YGEMPVDKAKAPLR  150 (179)
T ss_dssp             TSCCGGGGSCHHHH
T ss_pred             CCCCcHHHHHHHHH
Confidence            99999999876543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.90  E-value=3.7e-24  Score=203.14  Aligned_cols=163  Identities=16%  Similarity=0.105  Sum_probs=134.6

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ..+++++|+++  +.+.+. |..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.+++++
T Consensus        70 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~g~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~  142 (351)
T 3utm_A           70 RVRIVQLLLQH--GADVHAKDKGGLVPLHNAC--SYGHYEVTELLLKHGACV---NAMDLWQFTPLHEAASKNRVEVCSL  142 (351)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHc--CCCCCccCCCCCcHHHHHH--HCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            47899999999  666664 456999999999  779999999999998876   7778899999999999999999999


Q ss_pred             HhhhCCCCccc------------------------------------------------------cCCCCCcHHHHHHHc
Q 037143           94 ILDTFPVAMWD------------------------------------------------------LDPAEKNILLLAIEN  119 (382)
Q Consensus        94 Ll~~~~~~~~~------------------------------------------------------~d~~G~t~Lh~A~~~  119 (382)
                      |++.+.+ ++.                                                      .+..|+||||+|+..
T Consensus       143 Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~  221 (351)
T 3utm_A          143 LLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS  221 (351)
T ss_dssp             HHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHC
T ss_pred             HHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHH
Confidence            9998765 222                                                      346788999999999


Q ss_pred             ---CCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCC
Q 037143          120 ---RRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDD  196 (382)
Q Consensus       120 ---g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~  196 (382)
                         ++.+++++|++.+    +++|.+|.+|+||||+|+..|+.++++.               .++.   +.+++.+|..
T Consensus       222 ~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~g~~~~v~~---------------Ll~~---ga~~n~~d~~  279 (351)
T 3utm_A          222 LHPKRKQVAELLLRKG----ANVNEKNKDFMTPLHVAAERAHNDVMEV---------------LHKH---GAKMNALDSL  279 (351)
T ss_dssp             CSTTHHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCTT
T ss_pred             hCccHHHHHHHHHHcC----CCcCCcCCCCCCHHHHHHHcCCHHHHHH---------------HHHC---CCCCCCcCCC
Confidence               5589999999998    7999999999999999999999665432               1121   2345678888


Q ss_pred             CCCccccchhh
Q 037143          197 GKTPDEVFTES  207 (382)
Q Consensus       197 G~Tpldla~~~  207 (382)
                      |.||+++|...
T Consensus       280 g~t~L~~A~~~  290 (351)
T 3utm_A          280 GQTALHRAALA  290 (351)
T ss_dssp             SCCHHHHHHHH
T ss_pred             CCCHHHHHHHc
Confidence            88888887654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=1.2e-24  Score=197.28  Aligned_cols=173  Identities=12%  Similarity=0.020  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ...++++.|+++  +.+.+.+..|.||||.|+  ..|+.+++++|++.+++.   +..|..|+||||+||..|+.+++++
T Consensus        16 ~~~~~~~~ll~~--g~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~   88 (239)
T 1ycs_B           16 NLRKTGSERIAH--GMRVKFNPLPLALLLDSS--LEGEFDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTEIVKF   88 (239)
T ss_dssp             -----------------------CHHHHHHHH--HHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hhHHHHHHHhcc--CCCcccCchhhHHHHHHH--HcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            456789999999  877777777999999999  779999999999998866   7788999999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCC-CHHHHH--HhhCCCCccccCcchhh
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGN-SALHLA--AKYGDHLPLLFPGAALQ  170 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~-TpLH~A--~~~g~~~~~~~~~~~l~  170 (382)
                      |++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.|    ++++.+|.+|. ||||+|  +..|+.+++++.     
T Consensus        89 Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L-----  158 (239)
T 1ycs_B           89 LVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESG----AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL-----  158 (239)
T ss_dssp             HHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH-----
T ss_pred             HHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCcceecCCCCcchHHHHHHhhhccHHHHHHH-----
Confidence            9999887 7889999999999999999999999999998    79999998887 999999  777887775420     


Q ss_pred             hHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          171 VQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       171 ~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +...    ..+............+..|.+|.+++.++
T Consensus       159 l~~~----a~~~~~~~~~~~al~d~~~~~~~eLa~~~  191 (239)
T 1ycs_B          159 YGVQ----EKMGIMNKGVIYALWDYEPQNDDELPMKE  191 (239)
T ss_dssp             HHHH----HHTTTTGGGEEEESSCBCCSSTTBCCBCS
T ss_pred             HHhh----hcccccccceEEEEeccCCCCCCcccccC
Confidence            0000    00000111112335578899999887654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.90  E-value=2.5e-24  Score=200.43  Aligned_cols=122  Identities=15%  Similarity=-0.004  Sum_probs=108.7

Q ss_pred             cccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCC
Q 037143           31 YKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEK  110 (382)
Q Consensus        31 ~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~  110 (382)
                      ...|.+|+||||+|+  ..|+.+++++|++.+.+.   +..|.+|+||||+||..|+.+++++|++.+.+ ++.+|.+|+
T Consensus        53 ~~~~~~g~t~L~~Aa--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~  126 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAA--IHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWH  126 (285)
T ss_dssp             CSSSCCSCCHHHHHH--HTTCHHHHHHHHHTTCCS---CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCC
T ss_pred             cCCCccCCCHHHHHH--HcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCC
Confidence            345666999999999  789999999999998776   77888999999999999999999999999877 678899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          111 NILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       111 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      ||||+|+..|+.+++++|++.+    .+++.. .+|+||||+|+..|+.++++
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-~~g~t~L~~A~~~g~~~~v~  174 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHG----ASVQPE-SDLASPIHEAARRGHVECVN  174 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT----CCSSCS-CTTSCHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHcCHHHHHHHHHHCC----CCCCCC-CCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999998    566654 45999999999999977654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.90  E-value=1e-24  Score=186.83  Aligned_cols=147  Identities=18%  Similarity=0.101  Sum_probs=126.8

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      ...+.||||.|+  ..|+.+++++|++.+.+.   +..|..|.||||+|+..|+.+++++|++.+.+ ++..|..|+|||
T Consensus        11 ~~~~~~~l~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   84 (169)
T 2y1l_E           11 GSDLGKKLLEAA--RAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPL   84 (169)
T ss_dssp             --CHHHHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CCcccchHHHHH--HcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHH
Confidence            344889999999  789999999999998776   77788999999999999999999999999877 677899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccc
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRY  193 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~  193 (382)
                      |+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++.               .++.   ..+++.+
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~~---g~~~~~~  142 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNG----ADVNANDMEGHTPLHLAAMFGHLEIVEV---------------LLKN---GADVNAQ  142 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHHc---CCCCCCc
Confidence            9999999999999999998    7999999999999999999998665431               1222   2335689


Q ss_pred             cCCCCCccccchhhh
Q 037143          194 NDDGKTPDEVFTESH  208 (382)
Q Consensus       194 N~~G~Tpldla~~~~  208 (382)
                      |.+|.||+++|.+..
T Consensus       143 ~~~g~t~l~~A~~~~  157 (169)
T 2y1l_E          143 DKFGKTAFDISIDNG  157 (169)
T ss_dssp             CTTSCCHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHhC
Confidence            999999999997653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.90  E-value=3.2e-24  Score=197.83  Aligned_cols=162  Identities=14%  Similarity=0.030  Sum_probs=121.3

Q ss_pred             ccCCCCCccccccc-CCCcccccccCCCCCchhhh----hh----hccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccc
Q 037143           34 VYNGQDPRISTFGQ-DVNAFTARETPLDPSTYKKK----NA----RRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWD  104 (382)
Q Consensus        34 ~~~G~TPLh~A~~~-~~~~~~~v~~Ll~~~~~~~~----~~----~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~  104 (382)
                      |..|+||||+|+.. ..++.+++++|++.+++...    .+    ..|..|+||||+|+..|+.+++++|++.+++ ++.
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~  129 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQA  129 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCc
Confidence            56699999999932 24899999999998754210    01    1456899999999999999999999999887 566


Q ss_pred             cCC--------------CCCcHHHHHHHcCCHHHHHHHHh---CCCccccccccccCCCCCHHHHHHhhCCCCccccCcc
Q 037143          105 LDP--------------AEKNILLLAIENRRTSVYNLLLS---RKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGA  167 (382)
Q Consensus       105 ~d~--------------~G~t~Lh~A~~~g~~~iv~~Ll~---~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~  167 (382)
                      +|.              .|+||||+|+..|+.+++++|++   .|    ++++.+|.+|+||||+|+..|+...-.    
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g----ad~~~~d~~g~tpLh~A~~~~~~~~~~----  201 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP----ADISARDSVGNTVLHALVEVADNTVDN----  201 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC----CCTTCCCTTSCCHHHHHHHHCCSCHHH----
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC----CCceeeCCCCCcHHHHHHHccCcchhH----
Confidence            676              79999999999999999999999   77    799999999999999999988732210    


Q ss_pred             hhhhHHH-HHHHHHHHhhccc----cccccccCCCCCccccchhh
Q 037143          168 ALQVQWE-IKWFQHVKKLMPR----HFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       168 ~l~~~~~-~~~~~~v~~~~~~----~~~~~~N~~G~Tpldla~~~  207 (382)
                       .....+ +++  .++.....    ..++.+|++|.||+++|.+.
T Consensus       202 -~~~~~~~v~~--Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          202 -TKFVTSMYNE--ILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             -HHHHHHHHHH--HHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             -HHHHHHHHHH--HHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence             000000 111  11111111    11246899999999999765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.90  E-value=1.2e-24  Score=188.02  Aligned_cols=138  Identities=15%  Similarity=0.065  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ...++++.|+++++......|..|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.+++++
T Consensus        16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~   90 (179)
T 3f6q_A           16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC--REGRSAVVEMLIMRGARI---NVMNRGDDTPLHLAASHGHRDIVQK   90 (179)
T ss_dssp             TCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHhcCcccccccCCCCCCHHHHHH--HcCcHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            45689999999865555556777999999999  779999999999998876   7778899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLP  161 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~  161 (382)
                      |++.+++ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..++.++
T Consensus        91 Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~~~  153 (179)
T 3f6q_A           91 LLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANG----ALVSICNKYGEMPVDKAKAPLRELL  153 (179)
T ss_dssp             HHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSSBCCTTSCCGGGGSCHHHHHHH
T ss_pred             HHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCcchhccCCCCcHHHHHHHHHHHH
Confidence            9999887 6788999999999999999999999999998    7999999999999999998776443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.89  E-value=3.7e-24  Score=203.45  Aligned_cols=185  Identities=19%  Similarity=0.143  Sum_probs=133.8

Q ss_pred             HHHHHHHHHcCCCCCCccc-cc-CCCCCcccccccCCCcccccccCCCCCchhh--------------------------
Q 037143           15 AIQVLNELVDHRNPDQYKY-VY-NGQDPRISTFGQDVNAFTARETPLDPSTYKK--------------------------   66 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~-~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~--------------------------   66 (382)
                      .+|+|++||++  |++.+. ++ .|+||||+|+  ..|+.+++++|+++|++..                          
T Consensus        37 ~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~--~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (337)
T 4g8k_A           37 DVDLVQQLLEG--GANVNFQEEEGGWTPLHNAV--QMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFL  112 (337)
T ss_dssp             CHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHC--CCCCCccCCCCCcCHHHHHH--HcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhh
Confidence            46899999999  676664 33 4999999999  7899999999999876531                          


Q ss_pred             ----hhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCC---------ccccCCCCCcHHHHHHHcCCHHHHHHHHhC-C
Q 037143           67 ----KNARRSRRKETPILVAAKMGVTEMVKKILDTFPVA---------MWDLDPAEKNILLLAIENRRTSVYNLLLSR-K  132 (382)
Q Consensus        67 ----~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~---------~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~  132 (382)
                          ..+..|..|.||||+|+..|+.++++.|++.+++.         ....+..|+||||+|++.|+.+++++|+++ |
T Consensus       113 ~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~g  192 (337)
T 4g8k_A          113 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  192 (337)
T ss_dssp             TTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSC
T ss_pred             hccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccC
Confidence                12456778999999999999999999999987652         123466799999999999999999999964 5


Q ss_pred             CccccccccccCCCCCHHHHHHhhCCCC----cccc---Ccch-----------hhhHHHHHHHHHHHhhc--ccccccc
Q 037143          133 ALGQTIFWQVDNQGNSALHLAAKYGDHL----PLLF---PGAA-----------LQVQWEIKWFQHVKKLM--PRHFFTR  192 (382)
Q Consensus       133 ~~~~~~~~~~D~~G~TpLH~A~~~g~~~----~~~~---~~~~-----------l~~~~~~~~~~~v~~~~--~~~~~~~  192 (382)
                          +++|.+|..|+||||.++..++..    ++++   .|+.           +.........+.++...  ...+++.
T Consensus       193 ----ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~  268 (337)
T 4g8k_A          193 ----ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND  268 (337)
T ss_dssp             ----CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTC
T ss_pred             ----CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccC
Confidence                788888888888888877665532    2111   1221           11111111222333222  2345788


Q ss_pred             ccCCCCCccccchhh
Q 037143          193 YNDDGKTPDEVFTES  207 (382)
Q Consensus       193 ~N~~G~Tpldla~~~  207 (382)
                      +|++|+|||++|.+.
T Consensus       269 ~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          269 TDSDGKTALLLAVEL  283 (337)
T ss_dssp             BCTTSCBHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHc
Confidence            899999999998765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.89  E-value=2e-24  Score=201.08  Aligned_cols=178  Identities=15%  Similarity=0.091  Sum_probs=127.9

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      +.++.++|.+.  + ....|.+|+||||+|+  ..|+.+++++|++.+++.   +..  +|+||||+|+..|+.+++++|
T Consensus        12 ~~~v~~lL~~~--~-~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~--~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A           12 SKQLKSFLSSK--D-TFKADVHGHSASYYAI--ADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             HHHHHHHHHST--T-TTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTGGG---SCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred             HHHHHHHHHhC--C-CCccCCCCCCHHHHHH--HcCCHHHHHHHHhCCCCC---CCC--CCCCHHHHHHHcCCHHHHHHH
Confidence            45566666655  2 3445666999999998  678888999998888765   443  488999999999999999999


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCC-CCHHHHHHhhCCCCcccc---Ccc---
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQG-NSALHLAAKYGDHLPLLF---PGA---  167 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G-~TpLH~A~~~g~~~~~~~---~~~---  167 (382)
                      ++.+++ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+| .||||+|+..|+.++++.   .|+   
T Consensus        82 l~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~  156 (285)
T 3kea_A           82 LFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKN----WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF  156 (285)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC----GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC
T ss_pred             HHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC----CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Confidence            988777 6678888999999999999999999999887    7888888888 799999998888766542   111   


Q ss_pred             -------hhhhHHHHHHHHHHHhhc-cccccccccCCCCCc-cccchhh
Q 037143          168 -------ALQVQWEIKWFQHVKKLM-PRHFFTRYNDDGKTP-DEVFTES  207 (382)
Q Consensus       168 -------~l~~~~~~~~~~~v~~~~-~~~~~~~~N~~G~Tp-ldla~~~  207 (382)
                             ++.........+.++... .+.+++.+|.+|.|| +++|.+.
T Consensus       157 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~  205 (285)
T 3kea_A          157 DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN  205 (285)
T ss_dssp             CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHH
T ss_pred             cccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHc
Confidence                   111111111111222111 123467899999998 9998765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=8.3e-24  Score=194.67  Aligned_cols=166  Identities=16%  Similarity=0.105  Sum_probs=135.5

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      ..+++++|+++++..+...+..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.+++++|
T Consensus        17 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~L   91 (285)
T 1wdy_A           17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLF   91 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4689999999944433333556999999999  779999999999998876   77788999999999999999999999


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccc----------cCCCCCHHHHHHhhCCCCcccc
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQV----------DNQGNSALHLAAKYGDHLPLLF  164 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~----------D~~G~TpLH~A~~~g~~~~~~~  164 (382)
                      ++.+++ ++..|..|+||||+|+..|+.+++++|++.+    .+++.+          |..|.||||.|+..|+.++++.
T Consensus        92 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  166 (285)
T 1wdy_A           92 LSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRG----ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI  166 (285)
T ss_dssp             HHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT----CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHH
T ss_pred             HHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhC----CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHH
Confidence            999887 6778999999999999999999999999998    566665          8899999999999998665421


Q ss_pred             CcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          165 PGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       165 ~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                                     .++  ..+..++.+|..|.||++.+...
T Consensus       167 ---------------Ll~--~~~~~~~~~~~~g~t~l~~a~~~  192 (285)
T 1wdy_A          167 ---------------LLD--EMGADVNACDNMGRNALIHALLS  192 (285)
T ss_dssp             ---------------HHH--TSCCCTTCCCTTSCCHHHHHHHC
T ss_pred             ---------------HHH--hcCCCCCccCCCCCCHHHHHHHc
Confidence                           111  11233567777788888776543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=6.3e-24  Score=205.31  Aligned_cols=173  Identities=12%  Similarity=0.123  Sum_probs=134.5

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC---cHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG---VTEM   90 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g---~~~~   90 (382)
                      ..+++++|+++  +++.+. +..|+||||+|+  ..++.+++++|++.+......+..|..|.||||+|+..|   +.++
T Consensus       178 ~~~iv~~Ll~~--ga~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  253 (373)
T 2fo1_E          178 RRRLVAYLMKA--GADPTIYNKSERSALHQAA--ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS  253 (373)
T ss_dssp             CHHHHHHHHHT--TCCSCCCCTTCCCHHHHHH--HTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHH
T ss_pred             hHHHHHHHHHC--CCCCcccCCCCCCHHHHHH--HCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHH
Confidence            46799999998  666654 445999999999  678999999999886322223677888999999999988   8999


Q ss_pred             HHHHhhhCCCCcc-------ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           91 VKKILDTFPVAMW-------DLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        91 v~~Ll~~~~~~~~-------~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +++|++.+.+...       ..|..|+||||+|+..|+.+++++|++.+   .+++|.+|.+|+||||+|+..|+.++++
T Consensus       254 v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~---~~~~n~~d~~g~TpL~~A~~~g~~~iv~  330 (373)
T 2fo1_E          254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK---GSNKDKQDEDGKTPIMLAAQEGRIEVVM  330 (373)
T ss_dssp             HHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS---CCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc---CCCccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999998876321       25778999999999999999999999876   2689999999999999999999866543


Q ss_pred             cCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh-hHHHH
Q 037143          164 FPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES-HRDLV  212 (382)
Q Consensus       164 ~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~-~~~l~  212 (382)
                      .               .++.   +.+++.+|.+|.||+++|.+. +.+++
T Consensus       331 ~---------------Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv  362 (373)
T 2fo1_E          331 Y---------------LIQQ---GASVEAVDATDHTARQLAQANNHHNIV  362 (373)
T ss_dssp             H---------------HHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             H---------------HHHc---CCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence            2               1222   334678999999999998765 44433

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.89  E-value=6.1e-24  Score=190.80  Aligned_cols=145  Identities=17%  Similarity=0.106  Sum_probs=122.9

Q ss_pred             CCCCCcccccccCCCcccccccCCCC-CchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCc----cccCCCCC
Q 037143           36 NGQDPRISTFGQDVNAFTARETPLDP-STYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAM----WDLDPAEK  110 (382)
Q Consensus        36 ~G~TPLh~A~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~G~  110 (382)
                      .|+||||+|+  ..|+.++++.|++. +.+.   +..|..|+||||+|+..|+.+++++|++.+++..    +..|.+|+
T Consensus         2 ~g~t~L~~A~--~~g~~~~v~~Ll~~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~   76 (232)
T 2rfa_A            2 IWESPLLLAA--KENDVQALSKLLKFEGCEV---HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ   76 (232)
T ss_dssp             CTTCHHHHHH--HTTCHHHHHHHHTTTCSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC
T ss_pred             CCCCHHHHHH--HcCCHHHHHHHHHhcCCCc---ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc
Confidence            4899999999  78999999999987 7665   7788999999999999999999999999987632    45678999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCccccccccccC-------------CCCCHHHHHHhhCCCCccccCcchhhhHHHHHH
Q 037143          111 NILLLAIENRRTSVYNLLLSRKALGQTIFWQVDN-------------QGNSALHLAAKYGDHLPLLFPGAALQVQWEIKW  177 (382)
Q Consensus       111 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~-------------~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~  177 (382)
                      ||||+|+..|+.+++++|++.+    ++++.+|.             +|+||||+|+..|+.++++.             
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------  139 (232)
T 2rfa_A           77 TALHIAVINQNVNLVRALLARG----ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL-------------  139 (232)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT----CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHH-------------
T ss_pred             CHHHHHHHcCCHHHHHHHHhCC----CCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHH-------------
Confidence            9999999999999999999998    67777665             79999999999999665432             


Q ss_pred             HHHHHhhccccccccccCCCCCccccchhh
Q 037143          178 FQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       178 ~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                        .++.   +.+++.+|.+|.||+++|...
T Consensus       140 --Ll~~---ga~~~~~d~~g~t~L~~A~~~  164 (232)
T 2rfa_A          140 --LIEH---GADIRAQDSLGNTVLHILILQ  164 (232)
T ss_dssp             --HHHT---TCCTTCCCTTSCCHHHHHHTC
T ss_pred             --HHHC---CCCCCCCCCCCCCHHHHHHHc
Confidence              1222   334678999999999998765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.89  E-value=1.7e-24  Score=189.23  Aligned_cols=136  Identities=18%  Similarity=0.179  Sum_probs=122.7

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ..+++++|+++  +.+.+. +..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.+++++
T Consensus        47 ~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~  119 (192)
T 2rfm_A           47 MENAIDKLVEN--FDKLEDKDIEGSTALIWAV--KNNRLGIAEKLLSKGSNV---NTKDFSGKTPLMWSIIFGYSEMSYF  119 (192)
T ss_dssp             CGGGHHHHHHH--HCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHh--ccccccccccCccHHHHHH--HcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHH
Confidence            46889999998  555554 556999999999  779999999999988776   7778899999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |++.+++ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.+++
T Consensus       120 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          120 LLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELG----ADISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence            9999887 6788999999999999999999999999998    79999999999999999999996654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=1.7e-24  Score=183.56  Aligned_cols=144  Identities=19%  Similarity=0.081  Sum_probs=124.2

Q ss_pred             CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHH
Q 037143           36 NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLL  115 (382)
Q Consensus        36 ~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~  115 (382)
                      +..||||.|+  ..|+.++++.|++.+.+.   +..|..|+||||+|+. |+.+++++|++.+.+ ++.+|..|+||||+
T Consensus         4 ~~~~~L~~A~--~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   76 (162)
T 1ihb_A            4 PWGNELASAA--ARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHD   76 (162)
T ss_dssp             -CHHHHHHHH--HHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             hHhhHHHHHH--HcCCHHHHHHHHhCCCCc---cccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            4678999999  789999999999998776   7778899999999999 999999999999877 67789999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccC
Q 037143          116 AIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYND  195 (382)
Q Consensus       116 A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~  195 (382)
                      |+..|+.+++++|++.+    .+++.+|.+|+||||+|+..|+.++++.               .++..  ...++.+|.
T Consensus        77 A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~~g--~~~~~~~~~  135 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQ----ADVNIEDNEGNLPLHLAAKEGHLRVVEF---------------LVKHT--ASNVGHRNH  135 (162)
T ss_dssp             HHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHHS--CCCTTCCCT
T ss_pred             HHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------HHHcc--CCCCCCcCC
Confidence            99999999999999998    7999999999999999999998665421               12211  122468999


Q ss_pred             CCCCccccchhh
Q 037143          196 DGKTPDEVFTES  207 (382)
Q Consensus       196 ~G~Tpldla~~~  207 (382)
                      +|.||+++|...
T Consensus       136 ~g~t~l~~A~~~  147 (162)
T 1ihb_A          136 KGDTACDLARLY  147 (162)
T ss_dssp             TSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHc
Confidence            999999999765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.89  E-value=1.3e-24  Score=182.96  Aligned_cols=143  Identities=12%  Similarity=0.019  Sum_probs=123.0

Q ss_pred             CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHH
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLA  116 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A  116 (382)
                      +.||||.|+  ..|+.+++++|++.+.+.   + .+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|
T Consensus         2 ~~~~L~~A~--~~g~~~~v~~Ll~~g~~~---~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   74 (153)
T 1awc_B            2 LGKKLLEAA--RAGQDDEVRILMANGAPF---T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHH--HHTCHHHHHHHHHHTCCC---C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHH
T ss_pred             ccHHHHHHH--HcCCHHHHHHHHHcCCCC---C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence            357999999  789999999999988754   3 477899999999999999999999998877 677899999999999


Q ss_pred             HHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCC
Q 037143          117 IENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDD  196 (382)
Q Consensus       117 ~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~  196 (382)
                      +..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.++++.               .++.   +.+++.+|++
T Consensus        75 ~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~~---ga~~~~~~~~  132 (153)
T 1awc_B           75 ASEGHANIVEVLLKHG----ADVNAKDMLKMTALHWATEHNHQEVVEL---------------LIKY---GADVHTQSKF  132 (153)
T ss_dssp             HHHTCHHHHHHHHTTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCTT
T ss_pred             HHcChHHHHHHHHHcC----CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHHc---CCCccccCCC
Confidence            9999999999999998    7999999999999999999998665431               1222   2345689999


Q ss_pred             CCCccccchhhh
Q 037143          197 GKTPDEVFTESH  208 (382)
Q Consensus       197 G~Tpldla~~~~  208 (382)
                      |.||+++|....
T Consensus       133 g~t~l~~A~~~~  144 (153)
T 1awc_B          133 CKTAFDISIDNG  144 (153)
T ss_dssp             SCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcC
Confidence            999999997653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=1.2e-23  Score=193.51  Aligned_cols=181  Identities=19%  Similarity=0.113  Sum_probs=129.7

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ..+++++|+++  +.+.+. +.+|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.+++++
T Consensus        51 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~  123 (285)
T 1wdy_A           51 REDIVELLLRH--GADPVLRKKNGATPFLLAA--IAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKF  123 (285)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHHTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHc--CCCCcccCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CccCcccCCHHHHHHHhCCHHHHHH
Confidence            36888999988  555554 455999999998  678889999998888765   6677888999999999999999999


Q ss_pred             HhhhCCCCcccc----------CCCCCcHHHHHHHcCCHHHHHHHHhC-CCccccccccccCCCCCHHHHHHhhCCC---
Q 037143           94 ILDTFPVAMWDL----------DPAEKNILLLAIENRRTSVYNLLLSR-KALGQTIFWQVDNQGNSALHLAAKYGDH---  159 (382)
Q Consensus        94 Ll~~~~~~~~~~----------d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~D~~G~TpLH~A~~~g~~---  159 (382)
                      |++.+++ ++..          +..|.||||+|+..|+.+++++|++. +    .+++.+|..|+||||.|+..++.   
T Consensus       124 Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~  198 (285)
T 1wdy_A          124 LYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG----ADVNACDNMGRNALIHALLSSDDSDV  198 (285)
T ss_dssp             HHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSC----CCTTCCCTTSCCHHHHHHHCSCTTTH
T ss_pred             HHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcC----CCCCccCCCCCCHHHHHHHccccchH
Confidence            9888766 3333          67788999999999999999988887 5    68888888888888888888773   


Q ss_pred             -Ccccc---Cc-----------chhhhHHHHHHHHHHHhhc--cccccccccCCCCCccccchhh
Q 037143          160 -LPLLF---PG-----------AALQVQWEIKWFQHVKKLM--PRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       160 -~~~~~---~~-----------~~l~~~~~~~~~~~v~~~~--~~~~~~~~N~~G~Tpldla~~~  207 (382)
                       ++++.   .|           .+++........+.++...  .+.+++.+|.+|.||+++|.+.
T Consensus       199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~  263 (285)
T 1wdy_A          199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHc
Confidence             23221   11           1122211111122222222  2345678888889998888764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.89  E-value=1e-23  Score=189.35  Aligned_cols=183  Identities=15%  Similarity=0.024  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...+++++|+++  +.+.+. +..|+||||+|+  ..++.+++++|++.+++..  ...+..|.||||+|+..|+.++++
T Consensus        20 g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~~--~~~~~~~~t~L~~A~~~~~~~~v~   93 (240)
T 3eu9_A           20 GIYERCRELVEA--GYDVRQPDKENVTLLHWAA--INNRIDLVKYYISKGAIVD--QLGGDLNSTPLHWATRQGHLSMVV   93 (240)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCTT--CCBTTTTBCHHHHHHHHTCHHHHH
T ss_pred             CChHHHHHHHHc--CCCcCCCCCCCCCHHHHHH--HhCCHHHHHHHHHcCCcch--hhcCCcCCChhHHHHHcCCHHHHH
Confidence            457899999998  566654 556999999999  7799999999999887642  334455999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC-CCcccc---Cc--
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD-HLPLLF---PG--  166 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~-~~~~~~---~~--  166 (382)
                      .|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.+    .+++.+|.+|+||||+|+..++ .+++++   .|  
T Consensus        94 ~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~  168 (240)
T 3eu9_A           94 QLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG----QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS  168 (240)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC
T ss_pred             HHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcC----CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC
Confidence            99999877 6778999999999999999999999999998    7899999999999999998776 444321   11  


Q ss_pred             ----------chhhhHHHHHHHHHHHhhc-cccccccccCCCCCccccchhh
Q 037143          167 ----------AALQVQWEIKWFQHVKKLM-PRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       167 ----------~~l~~~~~~~~~~~v~~~~-~~~~~~~~N~~G~Tpldla~~~  207 (382)
                                .++.........+.++... .+.+++.+|.+|.||+++|.+.
T Consensus       169 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  220 (240)
T 3eu9_A          169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR  220 (240)
T ss_dssp             TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHT
T ss_pred             cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence                      1222221111112222211 1234567888888888888765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=2.1e-24  Score=178.29  Aligned_cols=119  Identities=14%  Similarity=0.012  Sum_probs=109.7

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCC-CCc
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPA-EKN  111 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-G~t  111 (382)
                      .+..|+||||+|+  ..++.+++++|++.+.+.   +.+|..|+||||+|+. |+.+++++|++.+++ ++.+|.. |+|
T Consensus         8 ~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t   80 (136)
T 1d9s_A            8 LGGSSDAGLATAA--ARGQVETVRQLLEAGADP---NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTR   80 (136)
T ss_dssp             CCCCCSCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBC
T ss_pred             CCCCCccHHHHHH--HcCCHHHHHHHHHcCCCc---CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCC
Confidence            4566999999999  789999999999998776   7778899999999999 999999999999887 6778998 999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          112 ILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       112 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |||+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..++.+++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~~~~~  127 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAG----ARLDVCDAWGRLPVDLAEEQGHRDIA  127 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTC----CCCCCCSSSSSCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999998    79999999999999999999986654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.2e-24  Score=184.08  Aligned_cols=142  Identities=14%  Similarity=-0.002  Sum_probs=106.2

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCc-
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKN-  111 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t-  111 (382)
                      .+..|.||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+ .|+.+++++|++.+.+ ++.+|..|+| 
T Consensus         8 ~~~~~~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~tt   80 (156)
T 1bi7_B            8 SMEPSADWLATAA--ARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTR   80 (156)
T ss_dssp             --CCSTTHHHHHH--HHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCC
T ss_pred             CCccchHHHHHHH--HcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcH
Confidence            3455999999999  779999999999988776   777889999999985 8999999999998877 6788999999 


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccc
Q 037143          112 ILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFT  191 (382)
Q Consensus       112 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~  191 (382)
                      |||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.++++.               .+   ..+..++
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~~~~v~~---------------Ll---~~ga~~~  138 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAG----ARLDVRDAWGRLPVDLAEELGHRDVARY---------------LR---AAAGGTR  138 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHT----CCSSCCCTTCCCHHHHHHHHTCHHHHHH---------------HS---SCC----
T ss_pred             HHHHHHHCCCHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHhCHHHHHHH---------------HH---HcCCCCC
Confidence            999999999999999999998    7899999999999999999998655421               11   1223456


Q ss_pred             cccCCCCCcccc
Q 037143          192 RYNDDGKTPDEV  203 (382)
Q Consensus       192 ~~N~~G~Tpldl  203 (382)
                      .+|..|.||.+-
T Consensus       139 ~~~~~g~t~~~~  150 (156)
T 1bi7_B          139 GSNHARIDAAEG  150 (156)
T ss_dssp             ------------
T ss_pred             ccCcCcCccccc
Confidence            888888888764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=1.4e-24  Score=179.39  Aligned_cols=124  Identities=15%  Similarity=0.020  Sum_probs=110.6

Q ss_pred             CCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCC
Q 037143           29 DQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPA  108 (382)
Q Consensus        29 ~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~  108 (382)
                      .+...|.+|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.+++++|++.+.+ ++.+|..
T Consensus         2 ~d~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~   75 (137)
T 3c5r_A            2 IDPFTNHRGETLLHIAS--IKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQ   75 (137)
T ss_dssp             --CCCCTTCCCHHHHHH--HHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGG
T ss_pred             CCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCC
Confidence            34456777999999999  779999999999998776   77788999999999999999999999999877 6778999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          109 EKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       109 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..+..+++
T Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~tpl~~A~~~~~~~~l  125 (137)
T 3c5r_A           76 NDSPLHDAAKNGHVDIVKLLLSYG----ASRNAVNIFGLRPVDYTDDESMKSLL  125 (137)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHhhccHHHHH
Confidence            999999999999999999999998    79999999999999999887764443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=7.4e-24  Score=178.55  Aligned_cols=141  Identities=16%  Similarity=0.104  Sum_probs=121.6

Q ss_pred             CCCCcccccccCCCcccccccCCCCC-chhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHH
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPS-TYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLL  115 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~  115 (382)
                      |.||||.|+  ..|+.++++.|++.. .+.   +..|..|+||||+ |..|+.+++++|++.+++ ++.+|..|+||||+
T Consensus         2 ~~~~L~~A~--~~g~~~~v~~ll~~~~~~~---~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAA--ARGDVQEVRRLLHRELVHP---DALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHH--HHTCHHHHHHHHHTTCCCT---TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             cchHHHHHH--HhCCHHHHHHHHHhhCcCc---cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHH
Confidence            568999999  789999999999772 133   6778899999999 999999999999999877 67889999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccC
Q 037143          116 AIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYND  195 (382)
Q Consensus       116 A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~  195 (382)
                      |+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.++++.               .++.    .+++.+|.
T Consensus        75 A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------Ll~~----~~~~~~~~  131 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHG----ADVNVPDGTGALPIHLAVQEGHTAVVSF---------------LAAE----SDLHRRDA  131 (156)
T ss_dssp             HHHTTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHHHHHTCHHHHHH---------------HHTT----SCTTCCCT
T ss_pred             HHHcCcHHHHHHHHHcC----CCCCCcCCCCCcHHHHHHHhChHHHHHH---------------HHhc----cCCCCcCC
Confidence            99999999999999998    7999999999999999999998655421               1111    44678999


Q ss_pred             CCCCccccchhh
Q 037143          196 DGKTPDEVFTES  207 (382)
Q Consensus       196 ~G~Tpldla~~~  207 (382)
                      +|.||+++|.+.
T Consensus       132 ~g~t~l~~A~~~  143 (156)
T 1bd8_A          132 RGLTPLELALQR  143 (156)
T ss_dssp             TSCCHHHHHHHS
T ss_pred             CCCCHHHHHHHc
Confidence            999999999765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.88  E-value=1.8e-23  Score=183.34  Aligned_cols=137  Identities=17%  Similarity=0.123  Sum_probs=122.0

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCC-CCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPL-DPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ..+++++|+++  +.+.+. +..|+||||+|+  ..++.+++++|+ +.+.+.   +..|..|.||||+|+..|+.++++
T Consensus        51 ~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~--~~~~~~~~~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~  123 (201)
T 3hra_A           51 DIEIAKALIDR--GADINLQNSISDSPYLYAG--AQGRTEILAYMLKHATPDL---NKHNRYGGNALIPAAEKGHIDNVK  123 (201)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHHSCCCT---TCCCTTSCCSHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHhccCccc---ccccCCCCcHHHHHHHcCCHHHHH
Confidence            47899999999  777665 455999999999  779999999999 455444   777889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCC-----HHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRR-----TSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~-----~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      +|++.++..++.+|..|+||||+|+..++     .+++++|++.|    ++++.+|.+|+||||+|+..|+.+++
T Consensus       124 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~~  194 (201)
T 3hra_A          124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG----ADQSIKDNSGRTAMDYANQKGYTEIS  194 (201)
T ss_dssp             HHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCC----CCCCccCCCCCCHHHHHHHcCCHhHH
Confidence            99999855588899999999999999998     99999999999    79999999999999999999996654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.88  E-value=5.6e-25  Score=198.55  Aligned_cols=179  Identities=8%  Similarity=-0.061  Sum_probs=125.8

Q ss_pred             HHHHHcCCCCCCc--ccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhh
Q 037143           19 LNELVDHRNPDQY--KYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILD   96 (382)
Q Consensus        19 v~~Ll~~~~~~~~--~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~   96 (382)
                      ++.||+++.....  ..+.+|.||||+|+  ..|+.+++++|++.+++.   +..|..|+||||+||..|+.+++++|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAA--LTGELEVVQQAVKEMNDP---SQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHH--HHTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHH--HcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4567777332222  23344888999999  779999999999888766   7778899999999999999999999999


Q ss_pred             hCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcccccccccc-CCCCCHHHHH--HhhCCCCcccc---Ccchhh
Q 037143           97 TFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVD-NQGNSALHLA--AKYGDHLPLLF---PGAALQ  170 (382)
Q Consensus        97 ~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpLH~A--~~~g~~~~~~~---~~~~l~  170 (382)
                      .+++ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+| .+|+||||+|  +..|+.++++.   .|+...
T Consensus        76 ~ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g----a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~  150 (229)
T 2vge_A           76 AGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHG----AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG  150 (229)
T ss_dssp             TTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT----CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred             CCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc
Confidence            9877 6778999999999999999999999999998    7898887 5999999999  88888776652   111111


Q ss_pred             hHHHHHH-----------HHHHHhhccccccccccCCCCCccccchhh
Q 037143          171 VQWEIKW-----------FQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       171 ~~~~~~~-----------~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      ....-..           .+.+...-....++.+|.+|.||+++|...
T Consensus       151 ~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~  198 (229)
T 2vge_A          151 LMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALH  198 (229)
T ss_dssp             TSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEET
T ss_pred             cccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHc
Confidence            1100000           000000001112567899999999999765

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.88  E-value=2.6e-23  Score=204.49  Aligned_cols=180  Identities=19%  Similarity=0.131  Sum_probs=106.8

Q ss_pred             HHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      .+++++|+++  +.+.+. +..|+||||+|+  ..++.+++++|++.+.+.   +..+..|.||||+|+..|+.++++.|
T Consensus       159 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~L  231 (437)
T 1n11_A          159 VRVAELLLER--DAHPNAAGKNGLTPLHVAV--HHNNLDIVKLLLPRGGSP---HSPAWNGYTPLHIAAKQNQVEVARSL  231 (437)
T ss_dssp             HHHHHHHHHT--TCCTTCCCSSCCCHHHHHH--HTTCHHHHHHHGGGTCCS---CCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHhCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            5677777776  544443 334777777777  567777777777766554   44555666777777777777777777


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcccc---Cc-----
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLF---PG-----  166 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~---~~-----  166 (382)
                      ++.+.+ ++..|..|+||||+|+..|+.+++++|++.+    ++++.+|..|+||||+|+..|+.++++.   .|     
T Consensus       232 l~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  306 (437)
T 1n11_A          232 LQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ----ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA  306 (437)
T ss_dssp             HHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT----CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC
Confidence            666555 4555666666666666666666666666665    4566666666666666666666544331   00     


Q ss_pred             ------chhhhHHHHHHHHHHHhhc-cccccccccCCCCCccccchhh
Q 037143          167 ------AALQVQWEIKWFQHVKKLM-PRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       167 ------~~l~~~~~~~~~~~v~~~~-~~~~~~~~N~~G~Tpldla~~~  207 (382)
                            .++.........+.++... ...+++.+|+.|.||+++|...
T Consensus       307 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~  354 (437)
T 1n11_A          307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ  354 (437)
T ss_dssp             CCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC
Confidence                  1111111100011111111 1334678899999999998765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.88  E-value=1.9e-23  Score=194.55  Aligned_cols=102  Identities=17%  Similarity=0.072  Sum_probs=75.7

Q ss_pred             CCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 037143           49 VNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLL  128 (382)
Q Consensus        49 ~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~L  128 (382)
                      .+..++.++|.+.+  .   +.+|..|+||||+|+..|+.+++++|++.+++ ++..  +|+||||+|+..|+.+++++|
T Consensus        10 ~~~~~v~~lL~~~~--~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A           10 WKSKQLKSFLSSKD--T---FKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             CCHHHHHHHHHSTT--T---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred             cCHHHHHHHHHhCC--C---CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHHHH
Confidence            34555666666553  2   56677788888888888888888888887665 3433  478888888888888888888


Q ss_pred             HhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          129 LSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       129 l~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      ++.|    ++++.+|.+|+||||+|+..|+.+++
T Consensus        82 l~~g----a~~~~~d~~g~t~L~~A~~~g~~~~v  111 (285)
T 3kea_A           82 LFSG----LDDSQFDDKGNTALYYAVDSGNMQTV  111 (285)
T ss_dssp             HHTT----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHCC----CCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            8887    67888888888888888888875554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.88  E-value=3.4e-23  Score=191.96  Aligned_cols=140  Identities=20%  Similarity=0.184  Sum_probs=121.2

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCccccccc---CCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQ---DVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMV   91 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~---~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v   91 (382)
                      ..+++++|++++.......+..|+||||+|+..   ..++.+++++|++.+...   +..+..|+||||+|+..|+.+++
T Consensus       123 ~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~---~~~~~~g~tpLh~A~~~g~~~~v  199 (276)
T 4hbd_A          123 NFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN---AKASQAGQTALMLAVSHGRVDVV  199 (276)
T ss_dssp             CHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT---CCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc---cccCCCCCCHHHHHHHcCCHHHH
Confidence            468999999994323334566699999999842   347888999999888654   66677899999999999999999


Q ss_pred             HHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh-CCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           92 KKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLS-RKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        92 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      ++|++.+++ ++.+|.+|+||||+|+..|+.+++++|++ .|    ++++.+|.+|+||||+|+..|+.+++
T Consensus       200 ~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g----ad~~~~d~~g~TpL~~A~~~g~~~iv  266 (276)
T 4hbd_A          200 KALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPS----CDISLTDRDGSTALMVALDAGQSEIA  266 (276)
T ss_dssp             HHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT----CCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC----CCCcCcCCCCCCHHHHHHHcCCHHHH
Confidence            999999887 78899999999999999999999999999 66    79999999999999999999997664

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.88  E-value=7.2e-24  Score=193.48  Aligned_cols=138  Identities=17%  Similarity=0.149  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHcCCCCCCcc------------cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCC-------
Q 037143           14 WAIQVLNELVDHRNPDQYK------------YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRR-------   74 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~------------~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-------   74 (382)
                      ...+++++|+++  +.+.+            .|..|+||||+|+  ..++.+++++|++.+++.   +..+..       
T Consensus        57 g~~~~v~~Ll~~--g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~~~  129 (256)
T 2etb_A           57 GVNACIMPLLQI--DKDSGNPKPLVNAQCTDEFYQGHSALHIAI--EKRSLQCVKLLVENGADV---HLRACGRFFQKHQ  129 (256)
T ss_dssp             TBCTTHHHHHHH--HHHTTCSSCGGGCCCCSTTTTTCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCCSGGGSCCS
T ss_pred             chHHHHHHHHhc--CCcccchhhhcccccccccccCCCHHHHHH--HcCCHHHHHHHHHcCCCC---Ccccccccccccc
Confidence            345789999988  43332            2345999999999  779999999999998876   555654       


Q ss_pred             ------CCcHHHHHHHcCcHHHHHHHhh---hCCCCccccCCCCCcHHHHHHH--cCCHH-------HHHHHHhCCCccc
Q 037143           75 ------KETPILVAAKMGVTEMVKKILD---TFPVAMWDLDPAEKNILLLAIE--NRRTS-------VYNLLLSRKALGQ  136 (382)
Q Consensus        75 ------g~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~G~t~Lh~A~~--~g~~~-------iv~~Ll~~~~~~~  136 (382)
                            |.||||+|+..|+.+++++|++   .+.+ ++.+|.+|+||||+|+.  .++.+       ++++|++.|    
T Consensus       130 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g----  204 (256)
T 2etb_A          130 GTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG----  204 (256)
T ss_dssp             SSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH----
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC----
Confidence                  9999999999999999999999   6766 78899999999999999  88888       999999998    


Q ss_pred             ccc-------ccccCCCCCHHHHHHhhCCCCccc
Q 037143          137 TIF-------WQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       137 ~~~-------~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +++       +.+|.+|+||||+|+..|+.++++
T Consensus       205 a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence            788       999999999999999999977653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.87  E-value=5e-23  Score=186.57  Aligned_cols=141  Identities=14%  Similarity=0.028  Sum_probs=93.1

Q ss_pred             cCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHH
Q 037143           35 YNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILL  114 (382)
Q Consensus        35 ~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh  114 (382)
                      ..|.||||.|+  ..+..+.++.|+++|++.   +. +..|.||||.|+..|+.++++.|++.+++ ++.+|..|+||||
T Consensus         3 ~~g~t~L~~a~--~~~~~~~~~~ll~~g~~~---~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~   75 (239)
T 1ycs_B            3 ITGQVSLPPGK--RTNLRKTGSERIAHGMRV---KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALH   75 (239)
T ss_dssp             ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHH
T ss_pred             ccccccCchhh--hhhhHHHHHHHhccCCCc---cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHH
Confidence            45999999999  779999999999999875   33 45689999999999999999999999886 7888999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhcccccccccc
Q 037143          115 LAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYN  194 (382)
Q Consensus       115 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N  194 (382)
                      +|+..|+.+++++|++.|    +++|.+|.+|+||||+|+..|+.+++++               .++.   ..+++.+|
T Consensus        76 ~A~~~g~~~~v~~Ll~~g----a~~~~~d~~g~tpL~~A~~~~~~~~v~~---------------Ll~~---ga~~~~~~  133 (239)
T 1ycs_B           76 NAVCAGHTEIVKFLVQFG----VNVNAADSDGWTPLHCAASCNNVQVCKF---------------LVES---GAAVFAMT  133 (239)
T ss_dssp             HHHHHTCHHHHHHHHHHT----CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHHHcCCHHHHHH---------------HHHc---CCCcceec
Confidence            999999999999999998    7999999999999999999999665432               1222   23356777


Q ss_pred             CCCC-Cccccc
Q 037143          195 DDGK-TPDEVF  204 (382)
Q Consensus       195 ~~G~-Tpldla  204 (382)
                      ..|. ||++++
T Consensus       134 ~~~~~t~l~~a  144 (239)
T 1ycs_B          134 YSDMQTAADKC  144 (239)
T ss_dssp             SSSCCCHHHHC
T ss_pred             CCCCcchHHHH
Confidence            7776 999998

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=1.1e-23  Score=173.81  Aligned_cols=119  Identities=14%  Similarity=0.069  Sum_probs=109.1

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      ...|.||||+|+  ..|+.+++++|++.+.+.   +..|..|+||||+|+..|+.+++++|++.+++ ++.+|.+|+|||
T Consensus        11 ~~~~~t~l~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L   84 (136)
T 2jab_A           11 GSDLGKKLLEAA--RAGQDDEVRILMANGADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPL   84 (136)
T ss_dssp             -CHHHHHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHH
T ss_pred             cccccHHHHHHH--HhCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHH
Confidence            344999999999  789999999999998776   77788999999999999999999999999877 677899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |+|+..|+.+++++|++.+    ++++.+|.+|+||||+|+..|+.+++
T Consensus        85 ~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~tpl~~A~~~~~~~~~  129 (136)
T 2jab_A           85 HLAAFIGHLEIAEVLLKHG----ADVNAQDKFGKTAFDISIGNGNEDLA  129 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcC----CCCcCcCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999998    78999999999999999999986654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=181.28  Aligned_cols=123  Identities=14%  Similarity=0.046  Sum_probs=111.6

Q ss_pred             ccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCc
Q 037143           32 KYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKN  111 (382)
Q Consensus        32 ~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t  111 (382)
                      ..|+.|.||||.|+  ..|+.++++.|++.+.+.   +..+..|.||||+|+..|+.+++++|++.+++.....+..|+|
T Consensus         4 ~~d~~~~~~l~~A~--~~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            4 HIDDYSTWDIVKAT--QYGIYERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST   78 (240)
T ss_dssp             CCSCGGGCCHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred             ccccccchHHHHHH--HcCChHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC
Confidence            35677999999999  789999999999998776   7778899999999999999999999999998866666677999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          112 ILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       112 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      |||+|+..|+.+++++|++.+    ++++.+|..|.||||.|+..|+.++++
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~~  126 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYG----ADPSLIDGEGCSCIHLAAQFGHTSIVA  126 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHcCCHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHcCHHHHHH
Confidence            999999999999999999998    789999999999999999999977654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.87  E-value=1.8e-23  Score=192.78  Aligned_cols=140  Identities=20%  Similarity=0.163  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHcCCCCC-------C---cccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccC----------
Q 037143           14 WAIQVLNELVDHRNPD-------Q---YKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSR----------   73 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~-------~---~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------   73 (382)
                      ...+++++|++++...       +   ...|..|+||||+|+  ..++.+++++|++.+++.   +..+.          
T Consensus        68 g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~--~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~~~~~  142 (273)
T 2pnn_A           68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAI--ERRNMTLVTLLVENGADV---QAAANGDFFKKTKGR  142 (273)
T ss_dssp             TBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCBCSGGGSSCSSS
T ss_pred             CChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHH--HcCCHHHHHHHHHCCCCc---Ccccccccccccccc
Confidence            3468999999983211       1   113456999999999  789999999999998876   55555          


Q ss_pred             ----CCCcHHHHHHHcCcHHHHHHHhh---hCCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCcccc
Q 037143           74 ----RKETPILVAAKMGVTEMVKKILD---TFPVAMWDLDPAEKNILLLAIENRR---------TSVYNLLLSRKALGQT  137 (382)
Q Consensus        74 ----~g~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~G~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~~~  137 (382)
                          .|.||||+|+..|+.+++++|++   .+.+ ++.+|.+|+||||+|+..|+         .+++++|++.|    +
T Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g----a  217 (273)
T 2pnn_A          143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG----A  217 (273)
T ss_dssp             CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH----H
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh----h
Confidence                79999999999999999999999   6666 78899999999999999998         79999999998    6


Q ss_pred             ccc-------cccCCCCCHHHHHHhhCCCCccc
Q 037143          138 IFW-------QVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       138 ~~~-------~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      ++|       .+|.+|+||||+|+..|+.++++
T Consensus       218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~  250 (273)
T 2pnn_A          218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLA  250 (273)
T ss_dssp             HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence            775       59999999999999999976653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.87  E-value=3.8e-24  Score=193.09  Aligned_cols=126  Identities=21%  Similarity=0.152  Sum_probs=96.1

Q ss_pred             ccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcc
Q 037143           56 ETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALG  135 (382)
Q Consensus        56 ~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~  135 (382)
                      +.|++.+++....+..+..|.||||.||..|+.++++.|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.|   
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g---   77 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAG---   77 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC---
Confidence            456666665544455566788999999999999999999998877 6778999999999999999999999999998   


Q ss_pred             ccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhcccccccccc-CCCCCccccc
Q 037143          136 QTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYN-DDGKTPDEVF  204 (382)
Q Consensus       136 ~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N-~~G~Tpldla  204 (382)
                       +++|.+|.+|+||||+|+..|+.++++.               .++.   ..+++.++ .+|.||+++|
T Consensus        78 -a~~n~~d~~g~tpLh~A~~~g~~~~v~~---------------Ll~~---ga~~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           78 -ANVNSPDSHGWTPLHCAASCNDTVICMA---------------LVQH---GAAIFATTLSDGATAFEKC  128 (229)
T ss_dssp             -CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHTT---TCCTTCCCSSTTCCTGGGC
T ss_pred             -CCCCCCCCCCCCHHHHHHHcCCHHHHHH---------------HHHc---CCCcccccCCCCCCHHHHH
Confidence             7899999999999999999999887642               2222   22344654 6899999998

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.87  E-value=5.7e-24  Score=185.83  Aligned_cols=136  Identities=15%  Similarity=0.103  Sum_probs=114.5

Q ss_pred             HHHHHHHHcCCCCCCcccccCCCCCcccccccCCCc----ccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCc----
Q 037143           16 IQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNA----FTARETPLDPSTYKKKNARRSRRKETPILVAAKMGV----   87 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~----~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~----   87 (382)
                      .+.++.+++.  +.+...+..|+||||+|+  ..++    .+++++|++.|++.   +.+|..|+||||+|+..|+    
T Consensus        19 ~~~~~~l~~~--~~~~~~~~~g~T~Lh~A~--~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~TpLh~a~~~~~~~~~   91 (186)
T 3t8k_A           19 YEDFLELFEK--GYEDKESVLKSNILYDVL--RNNNDEARYKISMFLINKGADI---KSRTKEGTTLFFPLFQGGGNDIT   91 (186)
T ss_dssp             HHHHHHHHHH--SSSCHHHHHTTTHHHHHT--TCSCHHHHHHHHHHHHHTTCCS---SCCCTTCCCTHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhc--CcccccccCCCCHHHHHH--HcCCcchHHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCcchh
Confidence            4567778876  443333356999999999  5565    35899999999887   8889999999999999987    


Q ss_pred             --HHHHHHHhhhCCCCccccCCCCC-cHHHHHHHcC-----CHHHHHHHHh-CCCccccccccccCCCCCHHHHHHhhCC
Q 037143           88 --TEMVKKILDTFPVAMWDLDPAEK-NILLLAIENR-----RTSVYNLLLS-RKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus        88 --~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                        .+++++|++.+.+ ++.+|..|+ ||||+|+..+     +.+++++|++ .|    ++++.+|.+|+||||+|+..|+
T Consensus        92 ~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g----ad~~~~d~~G~TpL~~A~~~~~  166 (186)
T 3t8k_A           92 GTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG----LQLLIKDKWGLTALEFVKRCQK  166 (186)
T ss_dssp             HHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT----CCTTCCCTTSCCHHHHHHTTTC
T ss_pred             hHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC----CCCcccCCCCCCHHHHHHHcCC
Confidence              6889999999988 788999999 9999999955     3569999999 77    8999999999999999999998


Q ss_pred             CCccc
Q 037143          159 HLPLL  163 (382)
Q Consensus       159 ~~~~~  163 (382)
                      .++++
T Consensus       167 ~~~v~  171 (186)
T 3t8k_A          167 PIALK  171 (186)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.87  E-value=1.5e-23  Score=191.76  Aligned_cols=139  Identities=19%  Similarity=0.189  Sum_probs=118.2

Q ss_pred             HHHHHHHHHcCCCC---------CCc-ccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhcc------------
Q 037143           15 AIQVLNELVDHRNP---------DQY-KYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRS------------   72 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~---------~~~-~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~------------   72 (382)
                      ..+++++|++++..         ... ..|..|+||||+|+  ..++.+++++|++.+++.   +..+            
T Consensus        61 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~~~~~~  135 (260)
T 3jxi_A           61 RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI--ERRCKHYVELLVEKGADV---HAQARGRFFQPKDEGG  135 (260)
T ss_dssp             BCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCEECCCSSSCCCC
T ss_pred             CHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHH--HcCCHHHHHHHHhCCCCc---CccccccccCcccccc
Confidence            36899999987311         112 22346999999999  789999999999999876   5555            


Q ss_pred             --CCCCcHHHHHHHcCcHHHHHHHhh---hCCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCccccc
Q 037143           73 --RRKETPILVAAKMGVTEMVKKILD---TFPVAMWDLDPAEKNILLLAIENRR---------TSVYNLLLSRKALGQTI  138 (382)
Q Consensus        73 --~~g~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~G~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~~~~  138 (382)
                        ..|+||||+|+..|+.+++++|++   .+.+ ++.+|.+|+||||+|+..++         .+++++|++.|    ++
T Consensus       136 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g----a~  210 (260)
T 3jxi_A          136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC----AK  210 (260)
T ss_dssp             SCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH----HH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC----cc
Confidence              579999999999999999999999   6666 78899999999999999888         79999999998    67


Q ss_pred             c-------ccccCCCCCHHHHHHhhCCCCccc
Q 037143          139 F-------WQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       139 ~-------~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +       +.+|.+|+||||+|+..|+.++++
T Consensus       211 ~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  242 (260)
T 3jxi_A          211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ  242 (260)
T ss_dssp             HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence            7       789999999999999999977653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=1e-23  Score=170.92  Aligned_cols=114  Identities=16%  Similarity=0.058  Sum_probs=102.9

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      +..|.||||+|+  ..++.++++.|++.+.+.   +..|..|+||||+||..|+.+++++|++.+++ ++.+|.+|+|||
T Consensus         4 ~~~~~~~l~~A~--~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL   77 (123)
T 3aaa_C            4 GSMCDKEFMWAL--KNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPL   77 (123)
T ss_dssp             ---CHHHHHHHH--HTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHH
T ss_pred             ccccchHHHHHH--HcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHH
Confidence            345899999999  789999999999998776   77788999999999999999999999999887 778899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhC
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYG  157 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g  157 (382)
                      |+|+..|+.+++++|++.+    ++++.+|.+|+||||+|...+
T Consensus        78 ~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           78 LSAVYEGHVSCVKLLLSKG----ADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHCCCHH
T ss_pred             HHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHhCCHH
Confidence            9999999999999999998    789999999999999995443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.86  E-value=4.2e-23  Score=198.25  Aligned_cols=157  Identities=12%  Similarity=-0.016  Sum_probs=126.4

Q ss_pred             cccCCCCCcccccccCCC--cccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCC----ccccC
Q 037143           33 YVYNGQDPRISTFGQDVN--AFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVA----MWDLD  106 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~----~~~~d  106 (382)
                      .|..|+||||+|+  ..+  +.+++++|++.+++.   +..|..|+||||+|+..|+.+++++|++.+++.    ++..|
T Consensus       134 ~~~~g~t~L~~A~--~~g~~~~~~v~~Ll~~ga~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~  208 (364)
T 3ljn_A          134 KHCKGQTALHWCV--GLGPEYLEMIKILVQLGASP---TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN  208 (364)
T ss_dssp             EEESCCCHHHHHH--HSCGGGHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCC
T ss_pred             CCCCCCCHHHHHH--HcCCchHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccC
Confidence            4556999999999  667  999999999998876   778889999999999999999999999998763    67789


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcccc---CcchhhhHHHHHHHHHHHh
Q 037143          107 PAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLF---PGAALQVQWEIKWFQHVKK  183 (382)
Q Consensus       107 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~---~~~~l~~~~~~~~~~~v~~  183 (382)
                      ..|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+..|+.+++++   .|+....         ...
T Consensus       209 ~~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~---------~~~  275 (364)
T 3ljn_A          209 KQGNSHLHWAILINWEDVAMRFVEMG----IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI---------QAC  275 (364)
T ss_dssp             TTCCCTTHHHHTTTCHHHHHHHHTTT----CCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHH---------HTC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhh---------hcC
Confidence            99999999999999999999999998    7999999999999999999999776542   0111100         000


Q ss_pred             hccccccccccCCCCCccccchhh
Q 037143          184 LMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       184 ~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      ..........+..|.||+..+...
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~aa~~  299 (364)
T 3ljn_A          276 PYHNGTTVLPDRVVWLDFVPAAAD  299 (364)
T ss_dssp             TTBSSSSBCGGGCCCCTTSCSSCC
T ss_pred             cccCcccccccccccccchhhhhc
Confidence            001111234677889999877654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.86  E-value=5e-23  Score=198.96  Aligned_cols=161  Identities=15%  Similarity=0.131  Sum_probs=133.0

Q ss_pred             HHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhh
Q 037143           18 VLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILD   96 (382)
Q Consensus        18 iv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~   96 (382)
                      .++.|+++  +.+.+. |..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.+++++|++
T Consensus       148 ~~~~ll~~--ga~vn~~d~~g~TpL~~A~--~~g~~~iv~~Ll~~ga~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  220 (373)
T 2fo1_E          148 EAKECIAA--GADVNAMDCDENTPLMLAV--LARRRRLVAYLMKAGADP---TIYNKSERSALHQAAANRDFGMMVYMLN  220 (373)
T ss_dssp             HHHHHHHT--CCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHhc--CCCCcCCCCCCCCHHHHHH--HcChHHHHHHHHHCCCCC---cccCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence            34566677  666665 556999999999  779999999999999876   7778899999999999999999999998


Q ss_pred             hC---CCCccccCCCCCcHHHHHHHcC---CHHHHHHHHhCCCcccccccc--------ccCCCCCHHHHHHhhCCCCcc
Q 037143           97 TF---PVAMWDLDPAEKNILLLAIENR---RTSVYNLLLSRKALGQTIFWQ--------VDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        97 ~~---~~~~~~~d~~G~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~--------~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      .+   .+ ++..|.+|+||||+|+..+   +.+++++|++.+    ++++.        +|.+|+||||+|+..|+.+++
T Consensus       221 ~~~~~~~-~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g----~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  295 (373)
T 2fo1_E          221 STKLKGD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG----AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV  295 (373)
T ss_dssp             SHHHHHT-TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHT----CCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHH
T ss_pred             cCccccC-hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCC----CCcccccccccCcccccCCCHHHHHHHhCCHHHH
Confidence            76   34 6778999999999999998   899999999998    45554        788999999999999986654


Q ss_pred             ccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          163 LFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       163 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +.               .++.  .+.+++.+|.+|.||+++|...
T Consensus       296 ~~---------------Ll~~--~~~~~n~~d~~g~TpL~~A~~~  323 (373)
T 2fo1_E          296 KY---------------LVGE--KGSNKDKQDEDGKTPIMLAAQE  323 (373)
T ss_dssp             HH---------------HHHH--SCCCTTCCCTTCCCHHHHHHHH
T ss_pred             HH---------------HHHh--cCCCccCcCCCCCCHHHHHHHc
Confidence            21               1111  1245678999999999998765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=7.2e-23  Score=165.39  Aligned_cols=117  Identities=26%  Similarity=0.285  Sum_probs=107.8

Q ss_pred             CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHH
Q 037143           36 NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLL  115 (382)
Q Consensus        36 ~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~  115 (382)
                      +|+||||+|+  ..++.+++++|++.+.+.   +..|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+
T Consensus         1 ~g~t~L~~A~--~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAA--RNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHH--HHTCHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CCccHHHHHH--HcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHH
Confidence            4899999999  779999999999988765   67788999999999999999999999999877 67789999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          116 AIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       116 A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |+..|+.+++++|++.+    .+++.+|.+|+||||+|+..|+.+++
T Consensus        75 A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~  117 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHLAARNGHLEVV  117 (126)
T ss_dssp             HHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHcChHHHHHHHHHcC----CCCcccCCCCCCHHHHHHHcCcHHHH
Confidence            99999999999999998    78999999999999999999986654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=1.7e-22  Score=183.86  Aligned_cols=114  Identities=18%  Similarity=0.111  Sum_probs=100.4

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccC-CCCCcH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLD-PAEKNI  112 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~  112 (382)
                      +.+|+||||+|+  ..++.++++.|++ +.+.   +.+|..|+||||+||..|+.+++++|++.+++ ++.+| ..|+||
T Consensus        42 ~~~g~t~L~~A~--~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~  114 (244)
T 3ui2_A           42 VSEYETPWWTAA--RKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTA  114 (244)
T ss_dssp             HHHHHHHHHHHH--TTTCHHHHHHTTT-TCCT---TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCH
T ss_pred             ccCCCCHHHHHH--HcCCHHHHHHHHc-CCCC---CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCH
Confidence            446999999999  7899999999999 6655   77888999999999999999999999999887 55566 789999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC
Q 037143          113 LLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus       113 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                      ||+|+..|+.+++++|+++|    ++++.+|.+|+||||+|+..++
T Consensus       115 L~~A~~~g~~~~v~~Ll~~g----a~~~~~d~~g~t~l~~A~~~~~  156 (244)
T 3ui2_A          115 LHMAAGYVRPEVVEALVELG----ADIEVEDERGLTALELAREILK  156 (244)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT----CCTTCCCTTCCCHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCcHHHHHHHHHh
Confidence            99999999999999999998    7999999999999999987543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.86  E-value=7e-23  Score=190.81  Aligned_cols=119  Identities=13%  Similarity=0.042  Sum_probs=108.2

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      +.+|.||||.|+  ..|+.++++.|++.+++.   +..|..|.||||+||..|+.+++++|++.+++ ++..|..|+|||
T Consensus        37 ~~~~~t~l~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL  110 (299)
T 1s70_B           37 KFDDGAVFLAAC--SSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPL  110 (299)
T ss_dssp             EECHHHHHHHHH--HHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccCCccHHHHHH--HcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHH
Confidence            445889999999  779999999999998776   77888999999999999999999999999877 678899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      |+|+..|+.+++++|++.|    ++++.+|.+|.||||+|+..++.+++
T Consensus       111 ~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~~  155 (299)
T 1s70_B          111 HAAASCGYLDIAEYLISQG----AHVGAVNSEGDTPLDIAEEEAMEELL  155 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCC----CCCCCcCCCCCCHHHHHHhcchHHHH
Confidence            9999999999999999998    78999999999999999888775554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=2.2e-22  Score=174.72  Aligned_cols=114  Identities=18%  Similarity=0.111  Sum_probs=104.2

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccC-CCCCcH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLD-PAEKNI  112 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~  112 (382)
                      +.+|+||||+|+  ..++.++++.|++ +.+.   +..|..|+||||+|+..|+.+++++|++.+++ ++.+| .+|+||
T Consensus        41 ~~~g~t~L~~A~--~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tp  113 (183)
T 3deo_A           41 VSEYETPWWTAA--RKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTA  113 (183)
T ss_dssp             HHHHHHHHHHHH--HTTCHHHHHHHTT-TSCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCH
T ss_pred             CCCCCCHHHHHH--HcCCHHHHHHHHh-cCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCH
Confidence            556999999999  7899999999999 6655   77888999999999999999999999999888 55566 899999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC
Q 037143          113 LLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus       113 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                      ||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..++
T Consensus       114 L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          114 LHMAAGYVRPEVVEALVELG----ADIEVEDERGLTALELAREILK  155 (183)
T ss_dssp             HHHHHHTTCHHHHHHHHHHT----CCTTCCCTTSCCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHcC----CCCcCCCCCCCCHHHHHHHhcc
Confidence            99999999999999999998    7999999999999999998765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.85  E-value=8.8e-22  Score=166.30  Aligned_cols=127  Identities=13%  Similarity=-0.014  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCc-HHHHHHHcCcHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKET-PILVAAKMGVTEMV   91 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t-pLh~Aa~~g~~~~v   91 (382)
                      ...+++++|+++  +.+.+. +..|+||||+|+   .++.+++++|++.+++.   +.+|..|+| |||+|+..|+.+++
T Consensus        23 g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~---~~~~~~v~~Ll~~g~~~---~~~d~~g~ttpL~~A~~~~~~~~v   94 (156)
T 1bi7_B           23 GRVEEVRALLEA--GANPNAPNSYGRRPIQVMM---MGSARVAELLLLHGAEP---NCADPATLTRPVHDAAREGFLDTL   94 (156)
T ss_dssp             TCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC---TTCHHHHHHHHTTTCCC---CCCCTTTCCCHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH---cCCHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHHCCCHHHH
Confidence            347899999998  666654 556999999984   58999999999998876   778889999 99999999999999


Q ss_pred             HHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHH
Q 037143           92 KKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLA  153 (382)
Q Consensus        92 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A  153 (382)
                      ++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++|    ++++.+|..|+||.+-+
T Consensus        95 ~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           95 VVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAA----GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             HHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcC----CCCCccCcCcCcccccC
Confidence            999999887 6788999999999999999999999999999    79999999999998844

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=1.1e-22  Score=177.76  Aligned_cols=158  Identities=6%  Similarity=-0.013  Sum_probs=121.7

Q ss_pred             CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcH----HHHHHHhhhCCCCccccCCCCCcH
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVT----EMVKKILDTFPVAMWDLDPAEKNI  112 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~G~t~  112 (382)
                      ++++||.|+  ..|+.+.++.+++.+.+.    ..+..|+||||+|+..|+.    +++++|++.+++ ++.+|.+|+||
T Consensus         6 ~~~~l~~Aa--~~g~~~~~~~l~~~~~~~----~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~Tp   78 (186)
T 3t8k_A            6 EYRTVSAAA--MLGTYEDFLELFEKGYED----KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTL   78 (186)
T ss_dssp             HCSSHHHHH--HHSCHHHHHHHHHHSSSC----HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCT
T ss_pred             cccHHHHHH--HcCCHHHHHHHHhcCccc----ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            689999999  779999888887765432    2225699999999999975    599999999888 78899999999


Q ss_pred             HHHHHHcCC------HHHHHHHHhCCCccccccccccCCCC-CHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhc
Q 037143          113 LLLAIENRR------TSVYNLLLSRKALGQTIFWQVDNQGN-SALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLM  185 (382)
Q Consensus       113 Lh~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~D~~G~-TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~  185 (382)
                      ||+|+..|+      .+++++|++.|    +++|.+|.+|+ ||||+|+..+..+.              ...+.++..+
T Consensus        79 Lh~a~~~~~~~~~~~~~iv~~Ll~~G----adin~~d~~g~ttpLh~A~~~~~~~~--------------~~~~iv~~Ll  140 (186)
T 3t8k_A           79 FFPLFQGGGNDITGTTELCKIFLEKG----ADITALYKPYKIVVFKNIFNYFVDEN--------------EMIPLYKLIF  140 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTT----CCSSSCBGGGTBCTTGGGGGCCSCHH--------------HHHHHHHHHH
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHCC----CCCCccCCCcCchHHHHHHHcCCChh--------------hHHHHHHHHH
Confidence            999999987      57899999999    89999999999 99999998554210              0001112111


Q ss_pred             --cccccccccCCCCCccccchhhh-HHHHHhhhhHh
Q 037143          186 --PRHFFTRYNDDGKTPDEVFTESH-RDLVKQGREWL  219 (382)
Q Consensus       186 --~~~~~~~~N~~G~Tpldla~~~~-~~l~~~~~~~~  219 (382)
                        .+.+++.+|++|+||+|+|.+.. .+.++...++.
T Consensus       141 ~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence              34567899999999999998753 44444443333

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.85  E-value=2e-22  Score=191.37  Aligned_cols=132  Identities=16%  Similarity=0.118  Sum_probs=111.4

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCc---ccccccCCCCC-chhhhhhhccCCCCcHHHHHHH----c
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNA---FTARETPLDPS-TYKKKNARRSRRKETPILVAAK----M   85 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~---~~~v~~Ll~~~-~~~~~~~~~~~~g~tpLh~Aa~----~   85 (382)
                      ..+++++||++  +++.+. |.+|+||||+|+  ..++   .++++.|++.+ ++.   +.+|..|+||||+|+.    .
T Consensus       143 ~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~--~~g~~~~~~~~~~ll~~~~~~~---~~~d~~g~tpLh~A~~~~~~~  215 (327)
T 1sw6_A          143 NLELVKHLVKH--GSNRLYGDNMGESCLVKAV--KSVNNYDSGTFEALLDYLYPCL---ILEDSMNRTILHHIIITSGMT  215 (327)
T ss_dssp             CHHHHHHHHHT--TCCTTBCCTTCCCHHHHHH--HSSHHHHTTCHHHHHHHHGGGG---GEECTTCCCHHHHHHHHHTST
T ss_pred             CHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH--HhcccccHHHHHHHHHhhhccc---cCCCCCCCCHHHHHHHHcccc
Confidence            47899999999  677765 555999999999  5666   67777777765 333   7788999999999999    9


Q ss_pred             CcHHHHHHHhhhCC--------------------C------------------------CccccCCCCCcHHHHHHHcCC
Q 037143           86 GVTEMVKKILDTFP--------------------V------------------------AMWDLDPAEKNILLLAIENRR  121 (382)
Q Consensus        86 g~~~~v~~Ll~~~~--------------------~------------------------~~~~~d~~G~t~Lh~A~~~g~  121 (382)
                      |+.++++.|++.+.                    +                        .++.+|.+|+||||+|+..|+
T Consensus       216 g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~  295 (327)
T 1sw6_A          216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN  295 (327)
T ss_dssp             TCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCC
T ss_pred             ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCC
Confidence            99999999987631                    0                        167789999999999999999


Q ss_pred             HHHHHHHHhCCCccccccccccCCCCCHHHHHHhhC
Q 037143          122 TSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYG  157 (382)
Q Consensus       122 ~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g  157 (382)
                      .+++++|++.|    ++++.+|.+|+||||+|+..|
T Consensus       296 ~~~v~~Ll~~G----ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          296 ISIVDALLDYG----ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHHHTT----CCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHHHHHcC----CCCcccCCCCCCHHHHHHhcC
Confidence            99999999999    899999999999999998764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=5.1e-21  Score=157.78  Aligned_cols=116  Identities=23%  Similarity=0.109  Sum_probs=100.3

Q ss_pred             hccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCH
Q 037143           70 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSA  149 (382)
Q Consensus        70 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~Tp  149 (382)
                      .+|..|+||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~   79 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHK----ALVNTTGYQNDSP   79 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCGGGCCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC----CcccCcCCCCCCH
Confidence            3577899999999999999999999999877 6788999999999999999999999999998    7999999999999


Q ss_pred             HHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          150 LHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       150 LH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                      ||+|+..|+.++++.               .++.   +.+++.+|.+|.||+++|.+..
T Consensus        80 L~~A~~~~~~~~v~~---------------Ll~~---ga~~~~~~~~g~tpl~~A~~~~  120 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKL---------------LLSY---GASRNAVNIFGLRPVDYTDDES  120 (137)
T ss_dssp             HHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCTTSCCGGGGCCCHH
T ss_pred             HHHHHHcCCHHHHHH---------------HHHc---CCCCCCCCCCCCCHHHHHhhcc
Confidence            999999998665431               1222   2346789999999999998654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=2.3e-22  Score=179.70  Aligned_cols=120  Identities=13%  Similarity=0.024  Sum_probs=109.0

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhh-CCCCccccCCCCCcH
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDT-FPVAMWDLDPAEKNI  112 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~  112 (382)
                      +.+|+||||+|+  ..|+.++++.|++.+++.   +.+|..|+||||+||..|+.+++++|++. +.+ ++.+|..|+||
T Consensus        70 ~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tp  143 (222)
T 3ehr_A           70 AESIDNPLHEAA--KRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTA  143 (222)
T ss_dssp             EEEESCHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCH
T ss_pred             cccccccccccc--ccCcHHHHHHHHhCCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCH
Confidence            445899999999  789999999999988776   77788999999999999999999999998 555 78899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          113 LLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       113 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      ||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..++.++++
T Consensus       144 L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~g~t~l~~A~~~~~~~~l~  190 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKG----ARTDLRNIEKKLAFDMATNAACASLLK  190 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHT----CCSCCCCTTSCCHHHHCCSHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcC----CCCccccCCCCCHHHHhcchhHHHHHH
Confidence            99999999999999999998    799999999999999999988766544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=2.2e-20  Score=151.08  Aligned_cols=113  Identities=17%  Similarity=0.036  Sum_probs=96.0

Q ss_pred             cCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHH
Q 037143           72 SRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALH  151 (382)
Q Consensus        72 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH  151 (382)
                      +..|.||||+|+..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKG----ADINAPDKHHITPLL   78 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT----CCTTCCCTTSCCHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCcCCCCCCCHHH
Confidence            34589999999999999999999999887 6788999999999999999999999999998    799999999999999


Q ss_pred             HHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          152 LAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       152 ~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +|+..|+.++++.               .++.   ..+++.+|++|.||+++|...
T Consensus        79 ~A~~~~~~~~v~~---------------Ll~~---ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           79 SAVYEGHVSCVKL---------------LLSK---GADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHHHHTCHHHHHH---------------HHHT---TCCTTCCCTTSCCHHHHCCCH
T ss_pred             HHHHcCCHHHHHH---------------HHHc---CCCCCCcCCCCCCHHHHhCCH
Confidence            9999998665431               1222   234678999999999999543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.82  E-value=7.4e-21  Score=180.62  Aligned_cols=159  Identities=14%  Similarity=0.082  Sum_probs=127.9

Q ss_pred             HHHHHHHHHcCCCCCCcc-----------cccCCCCCcccccccCCCcccccccCCC-CCchhhhhhhccCCCCcHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYK-----------YVYNGQDPRISTFGQDVNAFTARETPLD-PSTYKKKNARRSRRKETPILVA   82 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~-----------~~~~G~TPLh~A~~~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~g~tpLh~A   82 (382)
                      ..+++++|+++  +++.+           .+..|+||||+|+  ..|+.+++++|++ .+++.   +..|..|+||+|.+
T Consensus       137 ~~~~~~~ll~~--ga~~~~~~~~~~~~~~~~~~g~T~L~~A~--~~g~~~~v~~LL~~~gad~---n~~d~~g~t~l~~~  209 (337)
T 4g8k_A          137 KVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAA--EKGHVEVLKILLDEMGADV---NACDNMGRNALIHA  209 (337)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCCCC-----CTTCSCCHHHHHH--HHTCHHHHHHHHHHSCCCT---TCCCTTSCCHHHHH
T ss_pred             cHHHHHHHHHc--CCCcchhhccccccccccCCCCcHHHHHH--HCCCHHHHHHHHhccCCCc---CccCCCCCcHHHHH
Confidence            46889999998  44332           2345999999999  7899999999995 56665   77888999999998


Q ss_pred             HHcCc----HHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC
Q 037143           83 AKMGV----TEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus        83 a~~g~----~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                      +..++    .+++++|++.+.+ ++.+|.+|+||||+|+..|+.++++.|++..   .+++|.+|.+|+||||+|+..|+
T Consensus       210 ~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~---~~~vn~~d~~G~TpL~~A~~~g~  285 (337)
T 4g8k_A          210 LLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALLLAVELKL  285 (337)
T ss_dssp             HHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTST---TCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc---CCcccCcCCCCCCHHHHHHHcCC
Confidence            86554    4688999999887 7888999999999999999999999999875   27999999999999999999999


Q ss_pred             CCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          159 HLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       159 ~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      .+++++               .++..        -|.++.||++.|...
T Consensus       286 ~~iv~~---------------Ll~~G--------Ad~n~~~~L~~A~~~  311 (337)
T 4g8k_A          286 KKIAEL---------------LCKRG--------ASTDCGDLVMTARRN  311 (337)
T ss_dssp             HHHHHH---------------HHTTS--------CSSTTCCHHHHHHHT
T ss_pred             HHHHHH---------------HHHCC--------CCCCCCCHHHHHHHc
Confidence            766432               12211        244567899988764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=2.8e-21  Score=181.49  Aligned_cols=128  Identities=10%  Similarity=0.022  Sum_probs=103.9

Q ss_pred             HHHHHHHHHcCCCCCCccc-------ccCCCCCccccccc-CCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC
Q 037143           15 AIQVLNELVDHRNPDQYKY-------VYNGQDPRISTFGQ-DVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG   86 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-------~~~G~TPLh~A~~~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g   86 (382)
                      .++.++.|+++  +.+.+.       +..|+||||+|+.. ..++.+++++|++.+++.   +.+|..|+||||+|+..|
T Consensus       163 ~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv---n~~d~~G~TpLh~A~~~g  237 (301)
T 2b0o_E          163 DLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL---DAKAADGNTALHYAALYN  237 (301)
T ss_dssp             CHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT---TCCCTTCCCHHHHHHHTT
T ss_pred             CHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcC
Confidence            35678889988  555543       56699999999931 127899999999998876   778889999999999999


Q ss_pred             cHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC
Q 037143           87 VTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus        87 ~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                      +.+++++|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.+    ++      .|+||||+|+..|+
T Consensus       238 ~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g----a~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          238 QPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQ----AG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             CHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH----HH------TTSSCCC-------
T ss_pred             CHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc----CC------CCCChhHHHHhcCC
Confidence            99999999999887 6789999999999999999999999999987    33      68999999999887

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=9.2e-21  Score=182.58  Aligned_cols=146  Identities=14%  Similarity=0.054  Sum_probs=108.1

Q ss_pred             CCCCcccccccCC-CcccccccCCCCCchhhhhhhcc--CCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHH
Q 037143           37 GQDPRISTFGQDV-NAFTARETPLDPSTYKKKNARRS--RRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNIL  113 (382)
Q Consensus        37 G~TPLh~A~~~~~-~~~~~v~~Ll~~~~~~~~~~~~~--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L  113 (382)
                      +.||||.|+  .. ++.++++.|++.+++.   +..+  ..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+|||
T Consensus       199 ~~t~L~~Aa--~~~g~~~~v~~LL~~Gadv---n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL  272 (368)
T 3jue_A          199 PGALLFRAS--GHPPSLPTMADALAHGADV---NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL  272 (368)
T ss_dssp             HHHHHHHHT--SSSCCHHHHHHHHHTTCCT---TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CCcHHHHHH--HccCCHHHHHHHHHcCCCC---CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence            567999999  67 9999999999998876   5555  7899999999999999999999999887 778999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccc
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRY  193 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~  193 (382)
                      |+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.+++++               ..+...........
T Consensus       273 h~A~~~g~~~~v~~LL~~G----ad~~~~d~~G~TpL~~A~~~g~~~iv~l---------------Ll~~~~~~~~~~~~  333 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRG----ADLGARDSEGRDPLTIAMETANADIVTL---------------LRLAKMREAEAAQG  333 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHHHC--------
T ss_pred             HHHHHcCcHHHHHHHHHCc----CCCCCcCCCCCCHHHHHHHCCCHHHHHH---------------HHHcCCCccccccc
Confidence            9999999999999999998    7999999999999999999999766432               11111122223456


Q ss_pred             cCCCCCccccchhh
Q 037143          194 NDDGKTPDEVFTES  207 (382)
Q Consensus       194 N~~G~Tpldla~~~  207 (382)
                      +..+.|+++++...
T Consensus       334 ~~~~~t~l~i~~~~  347 (368)
T 3jue_A          334 QAGDETYLDIFRDF  347 (368)
T ss_dssp             --------------
T ss_pred             CCCCCCHHHHHHHH
Confidence            77899999998764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.80  E-value=2.6e-20  Score=153.56  Aligned_cols=109  Identities=13%  Similarity=0.041  Sum_probs=98.9

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCC-CCcHHHHHHHcCcHHHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRR-KETPILVAAKMGVTEMVK   92 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-g~tpLh~Aa~~g~~~~v~   92 (382)
                      ..+++++|+++  +.+.+. |..|+||||+|+  . ++.+++++|++.+++.   +.+|.. |+||||+|+..|+.++++
T Consensus        24 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~-~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~~~~~v~   95 (136)
T 1d9s_A           24 QVETVRQLLEA--GADPNALNRFGRRPIQVMM--M-GSAQVAELLLLHGAEP---NCADPATLTRPVHDAAREGFLDTLV   95 (136)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTCCTTTTTST--T-SCHHHHHHHHHHTCCS---SCCBTTTTBCHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHc--CCCcCCcCCCCCCHHHHHH--c-CCHHHHHHHHHCCCCC---CCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            47899999999  666654 556999999999  7 9999999999998876   777888 999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      +|++.+++ ++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        96 ~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           96 VLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999887 6788999999999999999999999999987

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=6.9e-20  Score=163.58  Aligned_cols=150  Identities=19%  Similarity=0.181  Sum_probs=118.3

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCch------------hhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCC
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTY------------KKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPV  100 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~------------~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  100 (382)
                      .+.++++|.+++.  ..|+...+.-+.+.+--            ....+..+..|.||||+||..|+.++++.|++.+.+
T Consensus        21 ~d~~~~~~~el~~--~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   98 (222)
T 3ehr_A           21 YTFEPRTPDELYI--EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG   98 (222)
T ss_dssp             SCCCCSSTTBCCC--CTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCcCCCCCCcccc--cCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCCC
Confidence            3556889999988  56666555444332210            011244566789999999999999999999998877


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHH
Q 037143          101 AMWDLDPAEKNILLLAIENRRTSVYNLLLSR-KALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQ  179 (382)
Q Consensus       101 ~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~  179 (382)
                       ++.+|..|+||||+|+..|+.+++++|++. +    +++|.+|.+|+||||+|+..|+.+++++               
T Consensus        99 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g----~~~~~~d~~g~tpL~~A~~~~~~~~v~~---------------  158 (222)
T 3ehr_A           99 -VNGLDKAGSTALYWACHGGHKDIVEMLFTQPN----IELNQQNKLGDTALHAAAWKGYADIVQL---------------  158 (222)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTT----CCCCCCCTTSCCHHHHHHHHTCHHHHHH---------------
T ss_pred             -ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCC----CCccccCCCCCCHHHHHHHcCCHHHHHH---------------
Confidence             678899999999999999999999999998 6    7999999999999999999999665432               


Q ss_pred             HHHhhccccccccccCCCCCccccchhh
Q 037143          180 HVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       180 ~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      .++.   +..++.+|.+|.||+++|...
T Consensus       159 Ll~~---ga~~~~~~~~g~t~l~~A~~~  183 (222)
T 3ehr_A          159 LLAK---GARTDLRNIEKKLAFDMATNA  183 (222)
T ss_dssp             HHHH---TCCSCCCCTTSCCHHHHCCSH
T ss_pred             HHHc---CCCCccccCCCCCHHHHhcch
Confidence            2222   234678999999999999765

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=1e-20  Score=151.15  Aligned_cols=108  Identities=19%  Similarity=0.098  Sum_probs=97.0

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcH
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI  112 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~  112 (382)
                      .|.+|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||
T Consensus         5 ~d~~g~t~L~~A~--~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tp   78 (115)
T 2l6b_A            5 GSKDGNTPLHNAA--KNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTP   78 (115)
T ss_dssp             CSCSSCCHHHHHH--HHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCT
T ss_pred             cCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCH
Confidence            4667999999999  779999999999998776   77788999999999999999999999999887 67789999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHH
Q 037143          113 LLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSAL  150 (382)
Q Consensus       113 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  150 (382)
                      ||+|+..|+.+++++|++.|    +++|.+|..|.||-
T Consensus        79 l~~A~~~~~~~~~~~Ll~~g----a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKG----ADVNARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTS----SSHHHHSCCCC---
T ss_pred             HHHHHHCCCHHHHHHHHHcC----CCCCcCCccccccc
Confidence            99999999999999999998    79999999999884

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.80  E-value=3e-20  Score=174.44  Aligned_cols=137  Identities=13%  Similarity=0.029  Sum_probs=112.4

Q ss_pred             CCCCcccccccCCCcccccccCCCCCchhhhhhh------ccCCCCcHHHHHHHc---CcHHHHHHHhhhCCCCccccCC
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPSTYKKKNAR------RSRRKETPILVAAKM---GVTEMVKKILDTFPVAMWDLDP  107 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~------~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~  107 (382)
                      +.+|||.|+  ..++.+.++.|++.+++.   +.      .+..|+||||+|+..   |+.+++++|++.+++ ++.+|.
T Consensus       151 ~~~~L~~A~--~~g~~~~v~~ll~~g~d~---~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~  224 (301)
T 2b0o_E          151 EPQRLWTAI--CNRDLLSVLEAFANGQDF---GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAA  224 (301)
T ss_dssp             CHHHHHHHH--HTTCHHHHHHHHHTTCCT---TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCT
T ss_pred             hHHHHhhhh--hccCHHHHHHHHhcCCcc---cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCC
Confidence            446699999  789999999998888765   43      577899999999997   899999999999887 788899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccc
Q 037143          108 AEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPR  187 (382)
Q Consensus       108 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~  187 (382)
                      +|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.+++++               .++     
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~g----ad~~~~d~~G~TpL~~A~~~~~~~iv~~---------------Ll~-----  280 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGR----ALVGTVNEAGETALDIARKKHHKECEEL---------------LEQ-----  280 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTT----CCCSCCCTTSCCHHHHHHHHTCHHHHHH---------------HHH-----
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHHH---------------HHH-----
Confidence            9999999999999999999999998    7999999999999999999999665431               111     


Q ss_pred             cccccccCCCCCccccchhh
Q 037143          188 HFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       188 ~~~~~~N~~G~Tpldla~~~  207 (382)
                          ...+.|.||+++|.+.
T Consensus       281 ----~ga~~g~tpLh~A~~~  296 (301)
T 2b0o_E          281 ----AQAGTFAFPLHVDYSW  296 (301)
T ss_dssp             ----HHHHTTSSCCC-----
T ss_pred             ----hcCCCCCChhHHHHhc
Confidence                1122689999999764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.80  E-value=1.9e-20  Score=162.48  Aligned_cols=113  Identities=21%  Similarity=0.141  Sum_probs=96.8

Q ss_pred             cCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcccccccccc-CCCCCHH
Q 037143           72 SRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVD-NQGNSAL  150 (382)
Q Consensus        72 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpL  150 (382)
                      +.+|+||||+|+..|+.++++.|++ +.+ ++.+|.+|+||||+|+..|+.+++++|++.+    +++|.+| .+|+|||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~~~~~g~tpL  114 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAG----ADLDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCSSSSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCcCCCCCCCCHH
Confidence            4569999999999999999999999 555 7889999999999999999999999999998    7999998 8999999


Q ss_pred             HHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhhh
Q 037143          151 HLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESH  208 (382)
Q Consensus       151 H~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~  208 (382)
                      |+|+..|+.++++.               .++.   +.+++.+|.+|.||+++|.+..
T Consensus       115 ~~A~~~~~~~~v~~---------------Ll~~---ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          115 HMAAGYVRPEVVEA---------------LVEL---GADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             HHHHHTTCHHHHHH---------------HHHH---TCCTTCCCTTSCCHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHH---------------HHHc---CCCCcCCCCCCCCHHHHHHHhc
Confidence            99999999665431               1222   2345689999999999998753

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.80  E-value=2.1e-20  Score=170.03  Aligned_cols=141  Identities=18%  Similarity=0.082  Sum_probs=116.9

Q ss_pred             cCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHH
Q 037143           35 YNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILL  114 (382)
Q Consensus        35 ~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh  114 (382)
                      ..|.+|+..++  ..++.+.++.+...+.+.      +.+|.||||+||+.|+.++++.|++ +.+ ++.+|..|+||||
T Consensus        13 ~~~~~~~l~~~--~~g~~~~~~~~~~~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~   82 (244)
T 3ui2_A           13 GEGAMEYLIEW--KDGHSPSWVPSSYIAADV------VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALL   82 (244)
T ss_dssp             TTTEEEEEEEE--SSCCCCEEEEGGGSCHHH------HHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHH
T ss_pred             CCCccHHHHHH--HcCCCccccccccccccc------ccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHH
Confidence            34788888888  678888877776665432      3469999999999999999999999 655 7889999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCcccccccccc-CCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccc
Q 037143          115 LAIENRRTSVYNLLLSRKALGQTIFWQVD-NQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRY  193 (382)
Q Consensus       115 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~  193 (382)
                      +|+..|+.+++++|++.|    +++|.+| .+|+||||+|+..|+.+++++               .++.   ..+++.+
T Consensus        83 ~A~~~g~~~~v~~Ll~~g----a~~~~~~~~~g~t~L~~A~~~g~~~~v~~---------------Ll~~---ga~~~~~  140 (244)
T 3ui2_A           83 FVAGLGSDKCVRLLAEAG----ADLDHRDMRGGLTALHMAAGYVRPEVVEA---------------LVEL---GADIEVE  140 (244)
T ss_dssp             HHHHHTCHHHHHHHHHTT----CCTTCCCSSSCCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCC
T ss_pred             HHHHCCCHHHHHHHHHcC----CCCCcCCCCCCCCHHHHHHHcCCHHHHHH---------------HHHC---CCCCCCC
Confidence            999999999999999998    7999998 889999999999999665432               1222   3346789


Q ss_pred             cCCCCCccccchhh
Q 037143          194 NDDGKTPDEVFTES  207 (382)
Q Consensus       194 N~~G~Tpldla~~~  207 (382)
                      |++|.||+++|.+.
T Consensus       141 d~~g~t~l~~A~~~  154 (244)
T 3ui2_A          141 DERGLTALELAREI  154 (244)
T ss_dssp             CTTCCCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHH
Confidence            99999999999753

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.79  E-value=4.6e-20  Score=152.02  Aligned_cols=111  Identities=15%  Similarity=0.056  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...+++++|+++  +.+.+. |..|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||+|+..|+.++++
T Consensus        25 g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~v~   97 (136)
T 2jab_A           25 GQDDEVRILMAN--GADVNAKDEYGLTPLYLAT--AHGHLEIVEVLLKNGADV---NAVDAIGFTPLHLAAFIGHLEIAE   97 (136)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH--HcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHcCCHHHHH
Confidence            346899999999  666554 556999999999  779999999999998876   778889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      +|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.|
T Consensus        98 ~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           98 VLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999887 6778999999999999999999999999875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=2.8e-20  Score=142.99  Aligned_cols=84  Identities=31%  Similarity=0.329  Sum_probs=54.8

Q ss_pred             CCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHH
Q 037143           75 KETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAA  154 (382)
Q Consensus        75 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~  154 (382)
                      |+||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCCCHHHHHH
Confidence            56666666666666666666666555 4556666666666666666666666666666    566666666666666666


Q ss_pred             hhCCCCccc
Q 037143          155 KYGDHLPLL  163 (382)
Q Consensus       155 ~~g~~~~~~  163 (382)
                      ..|+.++++
T Consensus        77 ~~~~~~~~~   85 (93)
T 1n0q_A           77 RNGHLEVVK   85 (93)
T ss_dssp             HTTCHHHHH
T ss_pred             HcCCHHHHH
Confidence            666655543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=1.8e-19  Score=138.37  Aligned_cols=91  Identities=24%  Similarity=0.261  Sum_probs=84.3

Q ss_pred             CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHH
Q 037143           36 NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLL  115 (382)
Q Consensus        36 ~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~  115 (382)
                      +|+||||+|+  ..++.+++++|++.+++.   +.+|..|+||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+
T Consensus         1 ~g~t~L~~A~--~~~~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAA--RNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CCCcHHHHHH--HcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHH
Confidence            4899999999  779999999999998876   78889999999999999999999999999887 67889999999999


Q ss_pred             HHHcCCHHHHHHHHhCC
Q 037143          116 AIENRRTSVYNLLLSRK  132 (382)
Q Consensus       116 A~~~g~~~iv~~Ll~~~  132 (382)
                      |+..|+.+++++|++.|
T Consensus        75 A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             HHHTTCHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHcC
Confidence            99999999999999988

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.78  E-value=4.6e-19  Score=142.81  Aligned_cols=111  Identities=26%  Similarity=0.299  Sum_probs=96.0

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHH
Q 037143           74 RKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLA  153 (382)
Q Consensus        74 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A  153 (382)
                      +|+||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++.+    .+++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG----ADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC----CCCcccCCCCCcHHHHH
Confidence            489999999999999999999999877 6778999999999999999999999999998    78999999999999999


Q ss_pred             HhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          154 AKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       154 ~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      +..|+.++++.               .++.   +..++.+|.+|.||+++|...
T Consensus        76 ~~~~~~~~~~~---------------Ll~~---g~~~~~~~~~g~t~l~~A~~~  111 (126)
T 1n0r_A           76 ARNGHLEVVKL---------------LLEA---GADVNAKDKNGRTPLHLAARN  111 (126)
T ss_dssp             HHTTCHHHHHH---------------HHHT---TCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHcChHHHHHH---------------HHHc---CCCCcccCCCCCCHHHHHHHc
Confidence            99998655321               1222   233568899999999999765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=2.4e-19  Score=166.30  Aligned_cols=119  Identities=11%  Similarity=0.047  Sum_probs=104.4

Q ss_pred             CCCCcccccccCCCcccccccCCCCCchhhh---hhhccCCCCcHHHHHHHc---CcHHHHHHHhhhCCCCccccCCCCC
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPSTYKKK---NARRSRRKETPILVAAKM---GVTEMVKKILDTFPVAMWDLDPAEK  110 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~---~~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~  110 (382)
                      ..++||.|+  ..++.+.++.+++.+.+...   .+..|..|+||||+|+..   |+.+++++|++.+++ ++.+|.+|+
T Consensus       130 ~l~~l~~a~--~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~  206 (278)
T 1dcq_A          130 KLHSLCEAV--KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHH--HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCC
T ss_pred             hhhhhhhHh--hhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCC
Confidence            456899999  77888888888887766321   234477899999999999   899999999999888 788999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143          111 NILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       111 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      ||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.+++
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~g----ad~~~~d~~g~tpL~~A~~~~~~~~v  254 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGK----ASIEIANESGETPLDIAKRLKHEHCE  254 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC----CCCCCccCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999999999998    79999999999999999999996654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=7.8e-19  Score=140.08  Aligned_cols=109  Identities=25%  Similarity=0.196  Sum_probs=91.3

Q ss_pred             hccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCH
Q 037143           70 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSA  149 (382)
Q Consensus        70 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~Tp  149 (382)
                      .+|.+|+||||+||..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+    ++++.+|.+|+||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~d~~g~tp   78 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG----ADVNARSKDGNTP   78 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT----CCTTCCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC----CCCcccCCCCCCH
Confidence            3577899999999999999999999999887 6778999999999999999999999999998    7999999999999


Q ss_pred             HHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCcc
Q 037143          150 LHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPD  201 (382)
Q Consensus       150 LH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpl  201 (382)
                      ||+|+..|+.++++.               .++   ...+++.+|..|.||.
T Consensus        79 l~~A~~~~~~~~~~~---------------Ll~---~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKL---------------LDA---KGADVNARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCHHHHHH---------------HHT---TSSSHHHHSCCCC---
T ss_pred             HHHHHHCCCHHHHHH---------------HHH---cCCCCCcCCccccccc
Confidence            999999998655421               111   2334668889999885

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.75  E-value=2e-19  Score=166.95  Aligned_cols=111  Identities=10%  Similarity=-0.038  Sum_probs=96.9

Q ss_pred             HHHHHHHHcCCCCCC----cc-cccCCCCCcccccccCC---CcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCc
Q 037143           16 IQVLNELVDHRNPDQ----YK-YVYNGQDPRISTFGQDV---NAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGV   87 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~----~~-~~~~G~TPLh~A~~~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~   87 (382)
                      .+.++.+++.+....    .+ .|..|+||||+|+  ..   ++.+++++|++.|++.   +.+|..|+||||+|+..|+
T Consensus       143 ~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~--~~~~~~~~~~v~~Ll~~ga~i---n~~d~~g~TpLh~A~~~g~  217 (278)
T 1dcq_A          143 IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV--RSVDRTSLHIVDFLVQNSGNL---DKQTGKGSTALHYCCLTDN  217 (278)
T ss_dssp             HHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHH--HHCCTTTHHHHHHHHHHCSCT---TCCCTTCCCHHHHHHHTTC
T ss_pred             cHHHHHHHHhhcchhhhccccccccCCCCcchHHH--HhcccchHHHHHHHHHCCCCc---cccCCCCCCHHHHHHHcCC
Confidence            567788888844332    11 2556999999999  55   8899999999999876   7889999999999999999


Q ss_pred             HHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143           88 TEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus        88 ~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      .+++++|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.+
T Consensus       218 ~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          218 AECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999887 7889999999999999999999999999988

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.74  E-value=5.9e-19  Score=176.92  Aligned_cols=116  Identities=14%  Similarity=0.065  Sum_probs=97.6

Q ss_pred             CCCcccccccCCCcccccccCCCCCchhhhhhhc------cCCCCcHHHHHHH---cCcHHHHHHHhhhCCCCccccCCC
Q 037143           38 QDPRISTFGQDVNAFTARETPLDPSTYKKKNARR------SRRKETPILVAAK---MGVTEMVKKILDTFPVAMWDLDPA  108 (382)
Q Consensus        38 ~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~------~~~g~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~  108 (382)
                      .+.||.|+  ..|+.+.++.|++.|++.   +..      |..|+||||+||.   .|+.+++++|++.+++ ++.+|.+
T Consensus       133 ~~~L~~A~--~~g~~~~v~~ll~~g~~~---n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~  206 (497)
T 3lvq_E          133 PQRLWTAI--CNRDLLSVLEAFANGQDF---GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAAD  206 (497)
T ss_dssp             HHHHHHHH--HHTCHHHHHHHHHTTCCS---SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSS
T ss_pred             HHHHHHHH--hccCHHHHHHHHhhcccc---cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCC
Confidence            35689998  778889998888888765   433      6778999999966   8889999999998877 6778889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          109 EKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       109 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      |+||||+|+..|+.+++++|+++|    +++|.+|.+|+||||+|+..|+.++++
T Consensus       207 g~TpLh~A~~~g~~~~v~~Ll~~g----a~~~~~d~~g~tpl~~A~~~~~~~~~~  257 (497)
T 3lvq_E          207 GNTALHYAALYNQPDCLKLLLKGR----ALVGTVNEAGETALDIARKKHHKECEE  257 (497)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHHHTC----CCCSCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC----CCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999999988    789999999999999999888866653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.71  E-value=3.5e-18  Score=164.52  Aligned_cols=136  Identities=16%  Similarity=0.166  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHcCCCCCCcccc---cCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYV---YNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEM   90 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~---~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~   90 (382)
                      ..+++++.|+++  +.+.+..   ..|+||||+|+  ..++.+++++|++.+++.   +..|..|+||||+|+..|+.++
T Consensus       211 g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa--~~g~~~iv~~LL~~Gadv---n~~d~~G~TpLh~A~~~g~~~~  283 (368)
T 3jue_A          211 PSLPTMADALAH--GADVNWVNGGQDNATPLIQAT--AANSLLACEFLLQNGANV---NQADSAGRGPLHHATILGHTGL  283 (368)
T ss_dssp             CCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHHHc--CCCCCccccccCCCCHHHHHH--HCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCcHHH
Confidence            457899999999  6666543   45999999999  779999999999999877   7888999999999999999999


Q ss_pred             HHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCC
Q 037143           91 VKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD  158 (382)
Q Consensus        91 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~  158 (382)
                      +++|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.+. .+......+..+.|+++++.....
T Consensus       284 v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~-~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          284 ACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKM-REAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             HHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------------
T ss_pred             HHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CcccccccCCCCCCHHHHHHHHHh
Confidence            9999999887 68899999999999999999999999998763 234555667788999998776543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=9.3e-18  Score=133.15  Aligned_cols=89  Identities=20%  Similarity=0.190  Sum_probs=79.5

Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCC
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNS  148 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  148 (382)
                      ...|.+|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.|    ++++.+|.+|+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g----a~~~~~d~~g~t   92 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG----ADVXAQDKFGKT   92 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC----CCccccccCCCc
Confidence            45577899999999999999999999999877 6778999999999999999999999999998    799999999999


Q ss_pred             HHHHHHhhCCCCcc
Q 037143          149 ALHLAAKYGDHLPL  162 (382)
Q Consensus       149 pLH~A~~~g~~~~~  162 (382)
                      |||+|+..|+.+++
T Consensus        93 pl~~A~~~~~~~~~  106 (110)
T 2zgd_A           93 AFDISIDNGNEDLA  106 (110)
T ss_dssp             HHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCHHHH
Confidence            99999999986553

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.71  E-value=9.4e-20  Score=176.08  Aligned_cols=121  Identities=16%  Similarity=0.035  Sum_probs=95.9

Q ss_pred             CCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCC--ccccCCCCCcHH
Q 037143           36 NGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVA--MWDLDPAEKNIL  113 (382)
Q Consensus        36 ~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~G~t~L  113 (382)
                      +++||||+|+  ..|+.+++++|++.+++....+..+..|.||||+||+.|+.++|++|++.+++.  .+..+.+ +|||
T Consensus        91 ~~~T~Lh~Aa--~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           91 KSEVICFVAA--ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             CHHHHHHHHH--HHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CcCCHHHHHH--HcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            4679999999  789999999999987632111223445789999999999999999999998652  1222223 8999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCcccccccc--ccCCCCCHHHHHH-hhCCCCccc
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQTIFWQ--VDNQGNSALHLAA-KYGDHLPLL  163 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~--~D~~G~TpLH~A~-~~g~~~~~~  163 (382)
                      |+|+..|+.+++++|+++|    ++++.  +|.+|+||||+|+ ..|+.++++
T Consensus       168 h~Aa~~G~~eiv~~Ll~~g----a~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELA----PTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSC----GGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcC----CccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            9999999999999999998    67777  8999999999999 999977653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.71  E-value=5.5e-20  Score=177.72  Aligned_cols=134  Identities=11%  Similarity=0.037  Sum_probs=107.0

Q ss_pred             HHHHHHHHHcCCCCCCc--ccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           15 AIQVLNELVDHRNPDQY--KYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~--~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ..+++++|++++.....  ..+..|+||||+|+  ..|+.+++++|++.+++....+..+.+ .||||+||..|+.++++
T Consensus       104 ~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa--~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~  180 (376)
T 2aja_A          104 CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA--ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLN  180 (376)
T ss_dssp             CHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH--HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH--HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHH
Confidence            47899999998431111  33445899999999  789999999999998642111222223 99999999999999999


Q ss_pred             HHhhhCCCCccc--cCCCCCcHHHHHH-HcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           93 KILDTFPVAMWD--LDPAEKNILLLAI-ENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        93 ~Ll~~~~~~~~~--~d~~G~t~Lh~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +|++.+++ ++.  .|.+|+||||+|+ .+|+.+++++|++.|    +       .|+||||.|+..|+.++++
T Consensus       181 ~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g----a-------~~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          181 RLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP----V-------MLAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH----H-------HHHHHHHCTTTTTTTTHHH
T ss_pred             HHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC----C-------ccchHHHHHHHCCCHHHHH
Confidence            99999887 444  7888999999999 999999999999976    2       2899999999999988754

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=5.5e-18  Score=134.49  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             CCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccC
Q 037143           27 NPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLD  106 (382)
Q Consensus        27 ~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d  106 (382)
                      |....+.|.+|+||||+|+  ..++.+++++|++.+++.   +.+|..|+||||+||..|+.+++++|++.+++ ++.+|
T Consensus        14 ~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~i---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d   87 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAA--RAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQD   87 (110)
T ss_dssp             --------CCHHHHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             CCcccccCCccchHHHHHH--HcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccc
Confidence            4455667888999999999  779999999999998776   77788999999999999999999999999877 77889


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHH
Q 037143          107 PAEKNILLLAIENRRTSVYNLL  128 (382)
Q Consensus       107 ~~G~t~Lh~A~~~g~~~iv~~L  128 (382)
                      ..|+||||+|+..|+.+++++|
T Consensus        88 ~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           88 KFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCCcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	382
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 34/166 (20%), Positives = 50/166 (30%), Gaps = 22/166 (13%)

Query: 77  TPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNI-----LLLAIENRRTSVYNLLLSR 131
           TP+ VA+ MG   +VK +L           P   N+     L +A     T V   LL  
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR------GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 132 KALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFT 191
           KA              + LH AA+ G           L                P H   
Sbjct: 56  KA----KVNAKAKDDQTPLHCAARIGH----TNMVKLLLENNANPNLATTAGHTPLHIAA 107

Query: 192 RYNDDGKTPDEVFTESHRDLV-KQGREWLTKTSESCS--VVAALIS 234
           R          +  E+ +  + K+G   L   ++     V   L+ 
Sbjct: 108 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 153

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 73  RRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRK 132
           R   TP+ VA+  G  ++VK +       +        + L  A +   T +  LLL   
Sbjct: 295 RMGYTPLHVASHYGNIKLVKFL-LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 353

Query: 133 ALGQTIFWQVDNQGNSALHLAAKYGDH 159
           A       +V + G + L +A + G  
Sbjct: 354 AS----PNEVSSDGTTPLAIAKRLGYI 376

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 42  ISTFGQDVNA-FTARETPLD---PSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDT 97
           I TF  D+ + F +    +    PS     N ++ +  E  +       + EM   + + 
Sbjct: 3   IITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMK-LEAFLQRLLFPEIQEMPTSLNND 61

Query: 98  FPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYG 157
                 +   + +    ++ ++    +  +  +       +   VD  GN+ LH      
Sbjct: 62  SSNRNSEGGSSNQQQQHVSFDS---LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA 118

Query: 158 D 158
           +
Sbjct: 119 N 119

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 82  AAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQ 141
           AAK  +  ++  I+      +      +++        R+ S+   L  +  +   +  Q
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 255

Query: 142 VDNQGNSALHLAAKYGD 158
            D+ G++ L++AA+ G+
Sbjct: 256 -DSNGDTCLNIAARLGN 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 76  ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALG 135
            T +  AA++    +VK ++          D   K  ++LA +  R  V   L+ + A  
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS- 246

Query: 136 QTIFWQVDNQGNSALHLAAKYGDH 159
                 VD   ++A  LA     H
Sbjct: 247 ---VEAVDATDHTARQLAQANNHH 267

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 113 LLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQ 172
           L LA+ ++     + LL   A  + +  Q ++ G +ALHLAA  G+   +    AA    
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 173 WEIKWFQH 180
              +   H
Sbjct: 72  LVAERGGH 79

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 80  LVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIF 139
           L+ A    +  + ++L      +     +  + L  A       +   L+   A      
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA----DS 203

Query: 140 WQVDNQGNSALHLAAKYG 157
              +   ++ L +A    
Sbjct: 204 SLKNCHNDTPLMVARSRR 221

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 68  NARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNL 127
           +  R +       ++   GV ++V K         + L       L+   +         
Sbjct: 245 HVNRLKEMHDAFKLSNPDGVFDLVTK--SECLQGFYMLRN-----LIRRNDEVLLDDIRF 297

Query: 128 LLSRKALGQTI-FWQVDNQGNSALHLAAKYGDH 159
           LLS   +        +    N  L LA + G+ 
Sbjct: 298 LLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 109 EKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGD 158
           + ++L+ A++N    +   LL   A    + +Q +  G + LH A +   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSR 51

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 71  RSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLS 130
           R  R +TP+++A +     +V+++L+   + + D D   K  LLLA+E +   +  LL  
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 131 RKA 133
           R A
Sbjct: 275 RGA 277

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.88
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.88
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.88
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.88
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.86
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.86
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.81
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.81
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.81
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.81
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.79
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.78
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.77
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.76
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.75
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.75
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.73
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.72
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.7
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.63

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.1e-27  Score=208.06  Aligned_cols=175  Identities=17%  Similarity=0.065  Sum_probs=118.0

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhh----------------------------
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKK----------------------------   66 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~----------------------------   66 (382)
                      .++.++.+++.++......|..|+||||+|+  ..|+.+++++|++.+....                            
T Consensus        15 ~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa--~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~   92 (223)
T d1uoha_          15 KLEELKESILADKSLATRTDQDSRTALHWAC--SAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK   92 (223)
T ss_dssp             CHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH--HHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCCcCcCcCCCCCCHHHHHH--HhhhhcccccccccccccccccccccccccccccccccchhHHHhcc
Confidence            3567777776655555566778999999999  5676666655554432210                            


Q ss_pred             --hhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccC
Q 037143           67 --KNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDN  144 (382)
Q Consensus        67 --~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~  144 (382)
                        ..+..|.+|+||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|.+.+    .+++.+|.
T Consensus        93 ~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~----~~i~~~d~  167 (223)
T d1uoha_          93 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYK----ASTNIQDT  167 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCT
T ss_pred             CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhhhcccc----ceeeeccC
Confidence              0144566677777777777777777777766655 4566777777777777777777777777666    56777777


Q ss_pred             CCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhhhHHHHHh
Q 037143          145 QGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTESHRDLVKQ  214 (382)
Q Consensus       145 ~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~~~~l~~~  214 (382)
                      +|+||||.|+..|+.++++.               .++.   +.+++.+|++|+||+|+|...+.+++++
T Consensus       168 ~g~TpL~~Aa~~g~~~~v~~---------------LL~~---Gad~~~~d~~g~tpl~~A~~~~~~i~~~  219 (223)
T d1uoha_         168 EGNTPLHLACDEERVEEAKL---------------LVSQ---GASIYIENKEEKTPLQVAKGGLGLILKR  219 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHH---------------HHHT---TCCSCCCCTTSCCHHHHCCTTHHHHHHH
T ss_pred             CCCceeccccccCcHHHHHH---------------HHHC---CCCCCCCCCCCCCHHHHHHCCCHHHHhc
Confidence            77777777777776544321               1222   2346789999999999998777766544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.2e-25  Score=196.71  Aligned_cols=169  Identities=15%  Similarity=0.047  Sum_probs=120.5

Q ss_pred             HHHHHHHHcCCCCCC-cc-cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           16 IQVLNELVDHRNPDQ-YK-YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~-~~-~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      .+++++|++++.+.. .+ .+..|+||||+|+  ..++.+++++|++.|++.   +.+|.+|.||||+|+..|+.++++.
T Consensus        22 ~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~--~~g~~~iv~~Ll~~ga~i---~~~d~~g~tpL~~A~~~~~~~~~~~   96 (255)
T d1oy3d_          22 EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA--ILGEASTVEKLYAAGAGV---LVAERGGHTALHLACRVRAHTCACV   96 (255)
T ss_dssp             HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH--HHTCHHHHHHHHHTTCCS---SCCCTTSCCHHHHHTTTTCHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCcCCCCCCccchHH--hhcccccccccccccccc---cccccccchhhhhhhccCchHHHHH
Confidence            468888888732222 22 3445888888888  668888888888888766   6677888888888888888888888


Q ss_pred             HhhhCCC----------------------------------------------CccccCCCCCcHHHHHHHcCCHHHHHH
Q 037143           94 ILDTFPV----------------------------------------------AMWDLDPAEKNILLLAIENRRTSVYNL  127 (382)
Q Consensus        94 Ll~~~~~----------------------------------------------~~~~~d~~G~t~Lh~A~~~g~~~iv~~  127 (382)
                      |++....                                              .++.+|.+|+||||+|++.++.+++++
T Consensus        97 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~  176 (255)
T d1oy3d_          97 LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL  176 (255)
T ss_dssp             HSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccc
Confidence            8653211                                              123457778888888888888888888


Q ss_pred             HHhCCCccccccc-cccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchh
Q 037143          128 LLSRKALGQTIFW-QVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTE  206 (382)
Q Consensus       128 Ll~~~~~~~~~~~-~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~  206 (382)
                      |++.+    .+.+ .++..|+||||+|+..|+.+++++               .++.   ..+++.+|++|+||+++|..
T Consensus       177 Ll~~~----~~~~~~~~~~g~TpL~~A~~~~~~~~v~~---------------Ll~~---gadin~~d~~g~t~L~~A~~  234 (255)
T d1oy3d_         177 LRDAG----ADLNKPEPTCGRTPLHLAVEAQAASVLEL---------------LLKA---GADPTARMYGGRTPLGSALL  234 (255)
T ss_dssp             HHHHT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCTTSCCHHHHHHT
T ss_pred             hhccc----ccccccccccccccccccccccHHHHHHH---------------HHHC---CCCCCCCCCCCCCHHHHHHH
Confidence            88877    3444 456788888888888887555421               1222   23467899999999999865


Q ss_pred             h-hHHH
Q 037143          207 S-HRDL  211 (382)
Q Consensus       207 ~-~~~l  211 (382)
                      . +.++
T Consensus       235 ~~~~~i  240 (255)
T d1oy3d_         235 RPNPIL  240 (255)
T ss_dssp             SSCHHH
T ss_pred             CCCHHH
Confidence            4 4443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6.3e-24  Score=188.04  Aligned_cols=170  Identities=15%  Similarity=0.090  Sum_probs=126.5

Q ss_pred             HHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC--------
Q 037143           15 AIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG--------   86 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g--------   86 (382)
                      ..++++.|++.++......|.+|+||||+|+  ..|+.+++++|++.+++....+..+..|.+|+|+|+..+        
T Consensus        12 ~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~--~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (229)
T d1ixva_          12 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSV--SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL   89 (229)
T ss_dssp             CHHHHHHHHHHCGGGTTCCCTTSCCHHHHHH--HTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCcccccCCCCCCHHHHHH--HcCCccccchhhhhhcccccccccccccccccccccccccccccccc
Confidence            3578888888755555556777999999999  779999999999988764333334444555555555544        


Q ss_pred             ---------------------------cHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcccccc
Q 037143           87 ---------------------------VTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIF  139 (382)
Q Consensus        87 ---------------------------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  139 (382)
                                                 +.++++.|++.+.+ ....|.+|+||||+|+..|+.+++++|++.+.   .++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~---~~i  165 (229)
T d1ixva_          90 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK---SAV  165 (229)
T ss_dssp             HSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC---CCS
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhccccccccccccccc---ccc
Confidence                                       44555555544443 45578899999999999999999999999873   688


Q ss_pred             ccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          140 WQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       140 ~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      |.+|.+|+||||+|+..|+.++++.               .+++  .+.+++.+|++|+||+|+|.+.
T Consensus       166 n~~d~~g~TpLh~A~~~~~~~~v~~---------------Ll~~--~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         166 NWQDKQGWTPLFHALAEGHGDAAVL---------------LVEK--YGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHH--HCCCSCCCCTTSCCTGGGCSCH
T ss_pred             cccccccCCchhhhcccccHHHHHH---------------HHHh--cCCCCCCcCCCCCCHHHHHhhH
Confidence            9999999999999999998665421               1111  1335679999999999999854

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.88  E-value=1.3e-23  Score=192.88  Aligned_cols=171  Identities=15%  Similarity=0.112  Sum_probs=139.7

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ..+++|++||++  |++.+. |.+|+||||+|+  ..|+.+++++|++.+.+.   ...+..+.||||.|+..|+.++++
T Consensus        51 G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~--~~g~~eiv~~Ll~~~~~~---~~~~~~~~~~L~~a~~~~~~~~~~  123 (291)
T d1s70b_          51 GDTEEVLRLLER--GADINYANVDGLTALHQAC--IDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAE  123 (291)
T ss_dssp             TCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHC--CCCCCccCCCCCcHHHHHH--hcCCceeeeeeccccccc---ccccccccccccccccccccchhh
Confidence            347899999999  777665 666999999999  779999999999998765   566778999999999999999999


Q ss_pred             HHhhhCCCC-----------------------------------------------------------ccccCCCCCcHH
Q 037143           93 KILDTFPVA-----------------------------------------------------------MWDLDPAEKNIL  113 (382)
Q Consensus        93 ~Ll~~~~~~-----------------------------------------------------------~~~~d~~G~t~L  113 (382)
                      .|++.+...                                                           ....+..|.|||
T Consensus       124 ~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  203 (291)
T d1s70b_         124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL  203 (291)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHH
T ss_pred             cccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChh
Confidence            998764320                                                           122567899999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccc
Q 037143          114 LLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRY  193 (382)
Q Consensus       114 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~  193 (382)
                      |.|+..|+.++++.|++.|    +++|.+|.+|+||||+|+..|+.+++++               .++.   +.+++.+
T Consensus       204 ~~a~~~~~~~~~~~Ll~~g----~din~~~~~g~TpL~~A~~~g~~~iv~l---------------Ll~~---Gadv~~~  261 (291)
T d1s70b_         204 HVAAAKGYTEVLKLLIQAR----YDVNIKDYDGWTPLHAAAHWGKEEACRI---------------LVEN---LCDMEAV  261 (291)
T ss_dssp             HHHHHHTCHHHHHHHHTTT----CCTTCCCTTCCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCC
T ss_pred             hHHHHcCChhhhcccccce----ecccccccCCCCHHHHHHHcCCHHHHHH---------------HHHC---CCCCCCc
Confidence            9999999999999999998    7999999999999999999999776532               2222   2346799


Q ss_pred             cCCCCCccccchhhhHHHHH
Q 037143          194 NDDGKTPDEVFTESHRDLVK  213 (382)
Q Consensus       194 N~~G~Tpldla~~~~~~l~~  213 (382)
                      |++|+||+|+|.+...++++
T Consensus       262 d~~G~TaL~~A~e~~~~~L~  281 (291)
T d1s70b_         262 NKVGQTAFDVADEDILGYLE  281 (291)
T ss_dssp             CTTSCCTTTSCCSGGGHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999875444443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.1e-23  Score=186.55  Aligned_cols=142  Identities=19%  Similarity=0.073  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCch----------------------------
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTY----------------------------   64 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~----------------------------   64 (382)
                      ...+++++|+++  +++.+. |.+|+||||+|+  ..++.+++++|++....                            
T Consensus        56 g~~~iv~~Ll~~--ga~i~~~d~~g~tpL~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (255)
T d1oy3d_          56 GEASTVEKLYAA--GAGVLVAERGGHTALHLAC--RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD  131 (255)
T ss_dssp             TCHHHHHHHHHT--TCCSSCCCTTSCCHHHHHT--TTTCHHHHHHHSSSCCSSCCCC-----------------------
T ss_pred             cccccccccccc--cccccccccccchhhhhhh--ccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHH
Confidence            357899999999  776665 556999999999  66777887777654321                            


Q ss_pred             ----------------hhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 037143           65 ----------------KKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLL  128 (382)
Q Consensus        65 ----------------~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~L  128 (382)
                                      ....+.+|.+|+||||+||..|+.++++.|++.+.+.....+..|+||||+|++.|+.+++++|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~L  211 (255)
T d1oy3d_         132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL  211 (255)
T ss_dssp             ------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             hhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHH
Confidence                            0111456778999999999999999999999998887766788999999999999999999999


Q ss_pred             HhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          129 LSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       129 l~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +++|    +++|.+|.+|+||||+|+..++.++++
T Consensus       212 l~~g----adin~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         212 LKAG----ADPTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHTT----CCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHCC----CCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            9998    799999999999999999999977653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=5.4e-24  Score=193.46  Aligned_cols=107  Identities=10%  Similarity=0.039  Sum_probs=87.2

Q ss_pred             HHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCC--------CCCchhhhhhhccCCCCcHHHHHHHcCcH
Q 037143           17 QVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPL--------DPSTYKKKNARRSRRKETPILVAAKMGVT   88 (382)
Q Consensus        17 eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll--------~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~   88 (382)
                      ++++.|.+.  +.+...++.|+||||+|+  ..|+.++++.|+        +.|++.   +.+|.+|+||||+|+..|+.
T Consensus        15 ~~~~~l~~~--~~n~~~~~~g~T~Lh~A~--~~g~~~~v~~Ll~~~~~~~l~~Gadv---n~~d~~G~TpLh~A~~~g~~   87 (277)
T d2fo1e1          15 AITEPITRE--SVNIIDPRHNRTVLHWIA--SNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDENTPLMLAVLARRR   87 (277)
T ss_dssp             CCCSCCSTT--TTTTCCCSSCCCHHHHHH--CTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHhc--CCCcCCCCCCccHHHHHH--HcCCHHHHHHHHhcchhHHHHcCCCc---cccCCCCCeeeccccccccc
Confidence            444555555  444333345999999999  789999999885        445555   77889999999999999999


Q ss_pred             HHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 037143           89 EMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSR  131 (382)
Q Consensus        89 ~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~  131 (382)
                      +++++|++++++ ++.+|.+|+||||+|+..++.++++.+...
T Consensus        88 ~iv~~Ll~~Gad-~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~  129 (277)
T d2fo1e1          88 RLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNS  129 (277)
T ss_dssp             HHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             cccccccccccc-cccccccccccccchhhhcchhhhhhhhhc
Confidence            999999999887 677899999999999999999888887654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=3.1e-24  Score=187.37  Aligned_cols=139  Identities=17%  Similarity=0.074  Sum_probs=120.7

Q ss_pred             HHHHHHHHcCCCCCCcc--cccCCCCCcccccccCCCcccccccCCCCCchhhh--------------------------
Q 037143           16 IQVLNELVDHRNPDQYK--YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKK--------------------------   67 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~--~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~--------------------------   67 (382)
                      .|+|+.|+++  |.+.+  .|.+|+||||+||  ..|+.+++++|++.+++...                          
T Consensus         2 ~~~v~~Ll~~--g~din~~~d~~G~t~L~~A~--~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1ot8a_           2 AQVISDLLAQ--GAELNATMDKTGETSLHLAA--RFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLR   77 (209)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHCCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHC--CCCcCcCcCCCCCCHHHHHH--HcCCHHHHHHHHhhcccccccccccccccccccccccccccccccc
Confidence            4899999999  66665  4667999999999  78999999999987654100                          


Q ss_pred             --------------------------------------hhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCC
Q 037143           68 --------------------------------------NARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAE  109 (382)
Q Consensus        68 --------------------------------------~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G  109 (382)
                                                            .+..+..|+||||.|+..|..++++.+++.+.+ ++..|.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g  156 (209)
T d1ot8a_          78 NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKD  156 (209)
T ss_dssp             CTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccc-cccccccc
Confidence                                                  033456899999999999999999999999877 67789999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          110 KNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       110 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      .||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|++.|+.++++
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~g----ad~n~~d~~g~Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNF----ANREITDHMDRLPRDVASERLHHDIVR  206 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCC----CCCCCcCCCCCCHHHHHHHcCCHHHHh
Confidence            99999999999999999999998    799999999999999999999977654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.7e-23  Score=172.98  Aligned_cols=138  Identities=15%  Similarity=0.115  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ..+++|+.||++++......|..|+||||+|+  . ++.++++.|++.+.+.   +..+..|.+|++.|+..++.++++.
T Consensus        13 g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~--~-~~~~~v~~Ll~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~   86 (156)
T d1bd8a_          13 GDVQEVRRLLHRELVHPDALNRFGKTALQVMM--F-GSTAIALELLKQGASP---NVQDTSGTSPVHDAARTGFLDTLKV   86 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC--T-TCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHhCCCCCCccCCCCCccccccc--c-cccccccccccccccc---ccccccccccccccccccccccccc
Confidence            45789999998754444445667999999997  3 6778899999888765   6677889999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      +++.+++ ++.+|.+|+||||+|++.|+.+++++|++ +    ++++.+|.+|+||||+|+..|+.++++
T Consensus        87 ~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~----~~~~~~d~~G~TpL~~A~~~g~~~iv~  150 (156)
T d1bd8a_          87 LVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA-E----SDLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T----SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             ccccccc-cccccCCCCeeeccccccccccccccccc-c----ccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999887 67789999999999999999999998874 5    589999999999999999999976643

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.1e-24  Score=172.51  Aligned_cols=107  Identities=18%  Similarity=0.098  Sum_probs=100.6

Q ss_pred             CCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHH
Q 037143           38 QDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAI  117 (382)
Q Consensus        38 ~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~  117 (382)
                      .|||++|+  +.|+.++++.|++.|++.   +..|..|+||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+
T Consensus         3 ~tpL~~A~--~~g~~~~v~~Ll~~g~d~---n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWAL--KNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHTTTCCC---CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHH
T ss_pred             ChHHHHHH--HCCCHHHHHHHHHhhhcc---ccccccccccccccccccccccccccccccce-eeecccccccchhhhh
Confidence            37999999  889999999999999876   77889999999999999999999999999887 7889999999999999


Q ss_pred             HcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHH
Q 037143          118 ENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAA  154 (382)
Q Consensus       118 ~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~  154 (382)
                      .+|+.+++++|++.|    ++++.+|.+|+||||+|.
T Consensus        77 ~~~~~~~v~~Ll~~G----ad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          77 YEGHVSCVKLLLSKG----ADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTTCCHHHHHHHTTC----CCSSSSSSSTCCCCCTCS
T ss_pred             hcCchhhhhhhhccc----ccceeeCCCCCCHHHHHh
Confidence            999999999999999    799999999999999884

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.4e-23  Score=183.55  Aligned_cols=135  Identities=19%  Similarity=0.140  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHcCCCCCCcc-cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYK-YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~-~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ...+++++|+++  +.+.+ .|.+|+||||+|+  ..++.+++++|++.|.+.   +..|..|.||||+|+..|+.++++
T Consensus        81 ~~~~i~~~Ll~~--~~d~~~~d~~g~tpL~~A~--~~~~~e~~~~Ll~~g~d~---~~~~~~~~t~L~~a~~~~~~~~~~  153 (223)
T d1uoha_          81 GRDEIVKALLGK--GAQVNAVNQNGCTPLHYAA--SKNRHEIAVMLLEGGANP---DAKDHYEATAMHRAAAKGNLKMIH  153 (223)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccchhHHHhcc--CceeEeeCCCCCchhhHHH--HcCCHHHHHHHHHCCCCC---CCcCCCCCccchhhhhcCCcchhh
Confidence            346899999998  55555 4566999999999  779999999999998776   777889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLP  161 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~  161 (382)
                      .|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|. .|+.++
T Consensus       154 ~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G----ad~~~~d~~g~tpl~~A~-~~~~~i  216 (223)
T d1uoha_         154 ILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQG----ASIYIENKEEKTPLQVAK-GGLGLI  216 (223)
T ss_dssp             HHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHCC-TTHHHH
T ss_pred             hhccccce-eeeccCCCCceeccccccCcHHHHHHHHHCC----CCCCCCCCCCCCHHHHHH-CCCHHH
Confidence            99988877 7889999999999999999999999999998    899999999999999984 566444

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=9e-23  Score=169.41  Aligned_cols=137  Identities=17%  Similarity=0.171  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHcCCCCCCcccccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKYVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKK   93 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~   93 (382)
                      ...|+++.||++  +++.+.|..|+||||+|+  ..++.+.++.+.......   ...+..+.+++|.++...+.+.++.
T Consensus        13 g~~~~v~~LL~~--ga~~~~~~~g~t~L~~a~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   85 (153)
T d1awcb_          13 GQDDEVRILMAN--GAPFTTDWLGTSPLHLAA--QYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASEGHANIVEV   85 (153)
T ss_dssp             TCHHHHHHHHHH--TCCCCCCTTCCCHHHHHH--HHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHc--CCCcccccCCCccccccc--cccccccccccccccccc---cccccccccccccccccccceeeec
Confidence            447899999999  667777778999999999  678888888887776544   4556678999999999999999999


Q ss_pred             HhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           94 ILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        94 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      +++.+.+ .+.+|.+|+||||+|+..|+.+++++|++.|    ++++.+|.+|+||||+|+.+|+.+++
T Consensus        86 l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g----ad~~~~d~~g~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_          86 LLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYG----ADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccCCc-cccccccCchHHHhhhhcchhheeeeccccc----cCCcccCCCCCCHHHHHHHcCCHHHH
Confidence            9998877 5678999999999999999999999999999    79999999999999999999997664

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-22  Score=179.87  Aligned_cols=162  Identities=18%  Similarity=0.114  Sum_probs=126.6

Q ss_pred             HHHHHHHcCCCCCCcc-cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHh
Q 037143           17 QVLNELVDHRNPDQYK-YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKIL   95 (382)
Q Consensus        17 eiv~~Ll~~~~~~~~~-~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll   95 (382)
                      ++++.+..+  +.+++ .|.+|+||||+|+  ..++.+++++|++.+++.   +..|..|.||||.|+..|+.++++.|+
T Consensus        20 ~li~~~~~~--~~~in~~d~~g~TpLh~A~--~~~~~~iv~~L~~~g~d~---~~~d~~g~t~l~~~~~~~~~~~~~~l~   92 (221)
T d1iknd_          20 EVIRQVKGD--LAFLNFQNNLQQTPLHLAV--ITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLT   92 (221)
T ss_dssp             CCCC-------CCCCCCCCTTCCCHHHHHH--HTTCHHHHHCCCSCCCCS---CCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhC--CCCcccCCCCCCccccccc--cccccccccccccccccc---cccccccccccccccccccccccchhh
Confidence            455666665  55555 4666999999999  779999999999999876   778899999999999999999999999


Q ss_pred             hhCC-----CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCcccccccccc-CCCCCHHHHHHhhCCCCccccCcchh
Q 037143           96 DTFP-----VAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVD-NQGNSALHLAAKYGDHLPLLFPGAAL  169 (382)
Q Consensus        96 ~~~~-----~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D-~~G~TpLH~A~~~g~~~~~~~~~~~l  169 (382)
                      +.+.     .........|+||||.|+..++.+.+++|++.+    ..++.++ .+|+||||+|+..|+.++++.     
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~----~~~~~~~~~~G~T~L~~A~~~g~~~~v~~-----  163 (221)
T d1iknd_          93 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG----ADVNAQEPCNGRTALHLAVDLQNPDLVSL-----  163 (221)
T ss_dssp             HSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT----CCTTCCCTTTCCCHHHHHHHTTCHHHHHH-----
T ss_pred             hhcccccccccccccccccchhhhHHhhcCChhheeeecccC----cccccccccCCCCccccccccccHHHHHH-----
Confidence            7642     223334567899999999999999999999988    4666554 689999999999999665431     


Q ss_pred             hhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          170 QVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       170 ~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                                .++   .+.+++.+|++|+||+++|.+.
T Consensus       164 ----------Ll~---~gad~~~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         164 ----------LLK---CGADVNRVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             ----------HHT---TTCCSCCCCTTCCCGGGGCTTS
T ss_pred             ----------HHh---cCCcccccCCCCCCHHHHHHHC
Confidence                      122   2345789999999999999765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-22  Score=175.30  Aligned_cols=163  Identities=18%  Similarity=0.059  Sum_probs=123.5

Q ss_pred             HHHHHHHH----cCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHH
Q 037143           16 IQVLNELV----DHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEM   90 (382)
Q Consensus        16 ~eiv~~Ll----~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~   90 (382)
                      .++++.|+    +.  +.+.+. |..|+||||+|+  ..++.+++++|++.+++.   +..+..|.++++.|...++.++
T Consensus        16 ~~~v~~Ll~~~~~~--g~~in~~d~~g~TpL~~A~--~~~~~~iv~~Ll~~ga~~---~~~~~~~~~~~~~a~~~~~~~~   88 (228)
T d1k1aa_          16 LPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAV--ITTLPSVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTC   88 (228)
T ss_dssp             HHHHHHHHHHHHHT--TCCSCCCCTTSCCHHHHHH--HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHC--CCCCCccCCCCCccceehh--cccccccccccccccccc---cccccccccccccccccccccc
Confidence            35555554    45  666654 455999999999  678899999999888765   5666778888888888887777


Q ss_pred             HHHHhhhC-------------------------------------CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 037143           91 VKKILDTF-------------------------------------PVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKA  133 (382)
Q Consensus        91 v~~Ll~~~-------------------------------------~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  133 (382)
                      ++.+....                                     .+.....+..|.+|||.|+..+..++++.+++.+ 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~-  167 (228)
T d1k1aa_          89 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-  167 (228)
T ss_dssp             HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             hhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhc-
Confidence            76654431                                     1222334567899999999999999999999988 


Q ss_pred             ccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          134 LGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       134 ~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                         ...+.+|.+|+||||+|+..|+.++++.               .++..   .+++.+|++|+||+++|.++
T Consensus       168 ---~~~~~~d~~g~t~L~~A~~~g~~~~v~~---------------Ll~~G---ad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         168 ---ANVNAQMYSGSSALHSASGRGLLPLVRT---------------LVRSG---ADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             ---CCTTCBCTTSCBHHHHHHHHTCHHHHHH---------------HHHTT---CCTTCCCTTSCCTTTTCSSH
T ss_pred             ---cccccccccCcchHHHHHHcCCHHHHHH---------------HHHCC---CCCCCCCCCCCCHHHHHHhC
Confidence               6889999999999999999999665432               23332   34679999999999999765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=5.7e-23  Score=190.58  Aligned_cols=150  Identities=13%  Similarity=0.094  Sum_probs=109.4

Q ss_pred             cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcH---HHHHHHhhhCCCCccccCCCC
Q 037143           33 YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVT---EMVKKILDTFPVAMWDLDPAE  109 (382)
Q Consensus        33 ~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~~d~~G  109 (382)
                      .|.+|+||||+||  ..|+.+++++|++.|++.   +.+|..|+||||.||..|+.   +.++.+++...+....+|..|
T Consensus       103 ~D~~G~T~LH~Aa--~~g~~~~v~~Ll~~gad~---~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g  177 (301)
T d1sw6a_         103 VDEHGNTPLHWLT--SIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  177 (301)
T ss_dssp             CSTTCCCHHHHHH--HTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             cCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCC---CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccccc
Confidence            3677999999999  789999999999999887   78899999999999998763   222233332222356679999


Q ss_pred             CcHHHHHHHcCC----HHH--------HHHHHhCCCc---------------------------------cccccccccC
Q 037143          110 KNILLLAIENRR----TSV--------YNLLLSRKAL---------------------------------GQTIFWQVDN  144 (382)
Q Consensus       110 ~t~Lh~A~~~g~----~~i--------v~~Ll~~~~~---------------------------------~~~~~~~~D~  144 (382)
                      +||||.++..+.    ..+        ++.+.+.+..                                 ....+|.+|.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~  257 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  257 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC
Confidence            999999987554    222        3334433311                                 0112789999


Q ss_pred             CCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccch
Q 037143          145 QGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFT  205 (382)
Q Consensus       145 ~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~  205 (382)
                      +|+||||+|++.|+.+++++               .++.   +.+++.+|++|+||+|+|.
T Consensus       258 ~G~TpLh~A~~~g~~~iv~~---------------Ll~~---GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         258 NGDTCLNIAARLGNISIVDA---------------LLDY---GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TSCCHHHHHHHHCCHHHHHH---------------HHHT---TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCHHHHHHHcCCHHHHHH---------------HHHC---CCCCCCCCCCCCCHHHHcC
Confidence            99999999999999776532               2222   2346799999999999974

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.2e-23  Score=167.17  Aligned_cols=116  Identities=16%  Similarity=0.038  Sum_probs=100.6

Q ss_pred             CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCC-cHHHH
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEK-NILLL  115 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~  115 (382)
                      +.++||+|+  ..|+.+++++|++.|++.   +.+|..|.||||.|+ .|+.+++++|++.+++ ++.+|..|. ||||+
T Consensus         3 ~~~~L~~Aa--~~G~~~~v~~Ll~~gad~---n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           3 SADWLATAA--ARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHD   75 (125)
T ss_dssp             STTHHHHHH--HHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHH
T ss_pred             ChhHHHHHH--HCCCHHHHHHHHHcCCcc---ccccccccccccccc-cccccccccccccccc-ccccccccccccccc
Confidence            678999999  779999999999998876   778889999999764 7999999999998887 566777665 69999


Q ss_pred             HHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          116 AIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       116 A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      |++.|+.+++++|++.|    ++++.+|.+|+||||+|+..|+.++++
T Consensus        76 A~~~g~~~~v~~Ll~~g----a~~~~~d~~G~T~l~~A~~~g~~~~v~  119 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAG----ARLDVRDAWGRLPVDLAEELGHRDVAR  119 (125)
T ss_dssp             HHHHTCHHHHHHHHHHT----CCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccccccccccccccccc----cccccccCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999988    789999999999999999999866643

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.4e-22  Score=164.33  Aligned_cols=138  Identities=17%  Similarity=0.105  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVK   92 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~   92 (382)
                      ..+|+|+.|+++  |.+.+. |..|+||||+|+   .++.+++++|++.+++.   +..+..|.+|++.++..|+.+.++
T Consensus        12 g~~~~v~~Ll~~--g~d~n~~d~~g~TpL~~A~---~~~~ei~~~Ll~~~a~~---~~~~~~~~~~l~~~~~~~~~~~~~   83 (156)
T d1ihba_          12 GDLEQLTSLLQN--NVNVNAQNGFGRTALQVMK---LGNPEIARRLLLRGANP---DLKDRTGFAVIHDAARAGFLDTLQ   83 (156)
T ss_dssp             TCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCC---SSCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHC--CCCcCccCCcccccccccc---ccccccccccccccccc---ccccccCccccccccccccccccc
Confidence            457899999999  666664 556999999886   36899999999998876   777889999999999999999999


Q ss_pred             HHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           93 KILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        93 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      .|++.+.+ .+..|..|.+|||+|+..++.+++++|++++.   .+.+.+|.+|.||||+|+..++.++++
T Consensus        84 ~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~d~~g~TpL~~A~~~~~~~iv~  150 (156)
T d1ihba_          84 TLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVS  150 (156)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC---CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccc---ccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99998877 67789999999999999999999999999883   588999999999999999999976643

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.2e-21  Score=156.25  Aligned_cols=108  Identities=18%  Similarity=0.052  Sum_probs=95.0

Q ss_pred             CcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHh
Q 037143           76 ETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAK  155 (382)
Q Consensus        76 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~  155 (382)
                      .|||++|+++|+.++++.|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.|    +++|.+|.+|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g----~din~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKG----ADINAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSS----CTTTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-ccccccccccccccccccccccccccccccc----ceeeecccccccchhhhhh
Confidence            4899999999999999999999887 7889999999999999999999999999998    7999999999999999999


Q ss_pred             hCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchh
Q 037143          156 YGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTE  206 (382)
Q Consensus       156 ~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~  206 (382)
                      .|+.++++.               .++.   +.+++.+|++|.||+|++..
T Consensus        78 ~~~~~~v~~---------------Ll~~---Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          78 EGHVSCVKL---------------LLSK---GADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TTCCHHHHH---------------HHTT---CCCSSSSSSSTCCCCCTCSS
T ss_pred             cCchhhhhh---------------hhcc---cccceeeCCCCCCHHHHHhH
Confidence            999776532               2222   23467999999999999854

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.4e-22  Score=165.14  Aligned_cols=141  Identities=20%  Similarity=0.112  Sum_probs=122.1

Q ss_pred             CCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHH
Q 037143           39 DPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIE  118 (382)
Q Consensus        39 TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~  118 (382)
                      +|||+||  ..|+.++++.|++.|++.   +.+|.+|.||||+|+ .|+.+++++|++.+++ ++.++.+|.++|+.++.
T Consensus         3 ~~Lh~Aa--~~g~~~~v~~Ll~~g~d~---n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASAA--ARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHHHH--HHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHH--HcCCHHHHHHHHHCCCCc---CccCCcccccccccc-cccccccccccccccc-cccccccCccccccccc
Confidence            7999999  779999999999999887   788999999999886 7999999999999887 67889999999999999


Q ss_pred             cCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCC
Q 037143          119 NRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGK  198 (382)
Q Consensus       119 ~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~  198 (382)
                      .++.+.++.|++.+    .+++..|..|.+|||+|+..++.++++.               .++.  .+.+.+.+|++|+
T Consensus        76 ~~~~~~~~~l~~~~----~~~~~~~~~~~~~l~~a~~~~~~~~~~~---------------Ll~~--~~~~~~~~d~~g~  134 (156)
T d1ihba_          76 AGFLDTLQTLLEFQ----ADVNIEDNEGNLPLHLAAKEGHLRVVEF---------------LVKH--TASNVGHRNHKGD  134 (156)
T ss_dssp             HTCHHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHH--SCCCTTCCCTTSC
T ss_pred             cccccccccccccc----cccccccccccccccccccccccccccc---------------cccc--ccccccccCCCCC
Confidence            99999999999998    6889999999999999999998554321               1111  2234678999999


Q ss_pred             Cccccchhh
Q 037143          199 TPDEVFTES  207 (382)
Q Consensus       199 Tpldla~~~  207 (382)
                      ||+|+|...
T Consensus       135 TpL~~A~~~  143 (156)
T d1ihba_         135 TACDLARLY  143 (156)
T ss_dssp             CHHHHHHHT
T ss_pred             CHHHHHHHc
Confidence            999998765

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-21  Score=158.78  Aligned_cols=115  Identities=13%  Similarity=-0.002  Sum_probs=102.1

Q ss_pred             CCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHH
Q 037143           39 DPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIE  118 (382)
Q Consensus        39 TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~  118 (382)
                      ++||.|+  ..|+.++++.|++.|++.   +.+|.+|+||||+||..|+.+++++|++.+.+ ++.+|.+|+||||+|+.
T Consensus         3 ~lL~~A~--~~G~~~~v~~Ll~~g~d~---n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSS--LEGEFDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHH--HHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHH--HcCCHHHHHHHHHcCCCc---cccccccccccccccccccccccccccccccc-cccccccCcccccccch
Confidence            4678899  789999999999999876   88899999999999999999999999999887 68899999999999999


Q ss_pred             cCCHHHHHHHHhCCCccccccccccC-CCCCHHHHH--HhhCCCCccc
Q 037143          119 NRRTSVYNLLLSRKALGQTIFWQVDN-QGNSALHLA--AKYGDHLPLL  163 (382)
Q Consensus       119 ~g~~~iv~~Ll~~~~~~~~~~~~~D~-~G~TpLH~A--~~~g~~~~~~  163 (382)
                      +|+.+++++|+++|    ++++.+|. +|+||++++  +..|+.++++
T Consensus        77 ~g~~~~v~~Ll~~g----a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~  120 (130)
T d1ycsb1          77 CNNVQVCKFLVESG----AAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  120 (130)
T ss_dssp             TTCHHHHHHHHHTT----CCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             hhHHHHHHHHHHcC----CCcccccCCCCCCHHHHHHHHHcChHHHHH
Confidence            99999999999998    78888775 689998876  4567777653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=3.9e-21  Score=174.31  Aligned_cols=87  Identities=21%  Similarity=0.171  Sum_probs=74.9

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHH
Q 037143           73 RRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHL  152 (382)
Q Consensus        73 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~  152 (382)
                      ..|+||||+++..|+.++++.++...+...+.+|..|+||||+|++.|+.+++++|++.|    +++|.+|.+|+||||+
T Consensus       185 ~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g----adin~~d~~G~T~L~~  260 (277)
T d2fo1e1         185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG----ASVEAVDATDHTARQL  260 (277)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT----CCSSCCCSSSCCHHHH
T ss_pred             cCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc----CCCCCcCCCCCCHHHH
Confidence            357777777777777777777666665556778999999999999999999999999998    7999999999999999


Q ss_pred             HHhhCCCCccc
Q 037143          153 AAKYGDHLPLL  163 (382)
Q Consensus       153 A~~~g~~~~~~  163 (382)
                      |++.|+.++++
T Consensus       261 A~~~~~~~iv~  271 (277)
T d2fo1e1         261 AQANNHHNIVD  271 (277)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHcCCHHHHH
Confidence            99999977654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.5e-21  Score=159.61  Aligned_cols=146  Identities=13%  Similarity=0.056  Sum_probs=122.4

Q ss_pred             CCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHH
Q 037143           38 QDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAI  117 (382)
Q Consensus        38 ~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~  117 (382)
                      .||||.|+  +.|+.+++++|++.+++.   + .|..|+||||+|+..++.++++.++...+. ....+..+.+++|.++
T Consensus         3 ~t~L~~Aa--~~g~~~~v~~LL~~ga~~---~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           3 GKKLLEAA--RAGQDDEVRILMANGAPF---T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHH--HHTCHHHHHHHHHHTCCC---C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHH--HCCCHHHHHHHHHcCCCc---c-cccCCCcccccccccccccccccccccccc-cccccccccccccccc
Confidence            38999999  789999999999998764   3 578899999999999999999999987665 4556788999999999


Q ss_pred             HcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCC
Q 037143          118 ENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDG  197 (382)
Q Consensus       118 ~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G  197 (382)
                      ...+.+.++++...+    .+.+.+|.+|+||||+|+..|+.+++++               .++.   +.+++.+|++|
T Consensus        76 ~~~~~~~~~~l~~~~----~~~~~~~~~g~T~L~~A~~~g~~~iv~~---------------ll~~---gad~~~~d~~g  133 (153)
T d1awcb_          76 SEGHANIVEVLLKHG----ADVNAKDMLKMTALHWATEHNHQEVVEL---------------LIKY---GADVHTQSKFC  133 (153)
T ss_dssp             HHTCHHHHHHHHTTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCTTS
T ss_pred             ccccceeeecccccC----CccccccccCchHHHhhhhcchhheeee---------------cccc---ccCCcccCCCC
Confidence            999999999999988    6899999999999999999999665432               1222   23467899999


Q ss_pred             CCccccchhh-hHHHH
Q 037143          198 KTPDEVFTES-HRDLV  212 (382)
Q Consensus       198 ~Tpldla~~~-~~~l~  212 (382)
                      .||+++|.++ +.+++
T Consensus       134 ~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_         134 KTAFDISIDNGNEDLA  149 (153)
T ss_dssp             CCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHcCCHHHH
Confidence            9999998765 34433

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.4e-20  Score=169.74  Aligned_cols=174  Identities=17%  Similarity=0.143  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHcCCCCCCccc--ccCCCCCcccccccCCCcccccccCCCCCchhh-------------------------
Q 037143           14 WAIQVLNELVDHRNPDQYKY--VYNGQDPRISTFGQDVNAFTARETPLDPSTYKK-------------------------   66 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~--~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~-------------------------   66 (382)
                      ...|+|++|+++  |.+.+.  +..|+||||+|+  ..++.+++++|++.+....                         
T Consensus        16 ~~~e~vk~Ll~~--G~din~~~~~~g~tpL~~A~--~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (285)
T d1wdya_          16 EDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAV--QMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF   91 (285)
T ss_dssp             TCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHH--HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHC--CCCcCccCCCCCCCHHHHHH--HcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchh
Confidence            446899999999  565543  445999999999  7788999988876554310                         


Q ss_pred             -----hhhhccCC-------------------------------------------CCcHHHHHHHcCcHHHHHHHhhhC
Q 037143           67 -----KNARRSRR-------------------------------------------KETPILVAAKMGVTEMVKKILDTF   98 (382)
Q Consensus        67 -----~~~~~~~~-------------------------------------------g~tpLh~Aa~~g~~~~v~~Ll~~~   98 (382)
                           .....+..                                           |.||||+|+++|+.+++++|++..
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  171 (285)
T d1wdya_          92 LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             HHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred             hhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhcc
Confidence                 00112233                                           444444444444444444444432


Q ss_pred             CCCccccCCCCCcHHHHHHHcC----CHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHH
Q 037143           99 PVAMWDLDPAEKNILLLAIENR----RTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWE  174 (382)
Q Consensus        99 ~~~~~~~d~~G~t~Lh~A~~~g----~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~  174 (382)
                      +..++..|..|+++++.+...+    ..+++++|++.|    ++++.+|.+|+||||.|+..|+.++++.          
T Consensus       172 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~g----a~~n~~~~~g~t~L~~a~~~~~~~~v~~----------  237 (285)
T d1wdya_         172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG----ADVNVRGERGKTPLILAVEKKHLGLVQR----------  237 (285)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT----CCSSCCCTTSCCHHHHHHHTTCHHHHHH----------
T ss_pred             CCCcccccCCCCcccccccccccchHHHHHHHHHHHCC----CCCCccCCCCCCccchhhhcCcHHHHHH----------
Confidence            2223444444444444433322    223444455444    5778889999999999999988554321          


Q ss_pred             HHHHHHHHhhccccccccccCCCCCccccchhh-hHHHH
Q 037143          175 IKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES-HRDLV  212 (382)
Q Consensus       175 ~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~-~~~l~  212 (382)
                           .++  ..+.+++.+|.+|.|||++|.+. +.+.+
T Consensus       238 -----lL~--~~g~din~~d~~G~TpL~~A~~~~~~eiv  269 (285)
T d1wdya_         238 -----LLE--QEHIEINDTDSDGKTALLLAVELKLKKIA  269 (285)
T ss_dssp             -----HHH--SSSCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             -----HHH--cCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence                 111  23445788999999999999875 34443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.7e-21  Score=158.02  Aligned_cols=144  Identities=17%  Similarity=0.110  Sum_probs=119.7

Q ss_pred             CcccccccCCCcccccccCCCC-CchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHH
Q 037143           40 PRISTFGQDVNAFTARETPLDP-STYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIE  118 (382)
Q Consensus        40 PLh~A~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~  118 (382)
                      +||.||  ..|+.++++.|++. +.+.   +..|..|+||||+|+ .|+.+++++|++.+.+ ++..+..|.+|++.++.
T Consensus         5 ~L~~Aa--~~g~~~~vk~lL~~~~~~~---n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           5 RLSGAA--ARGDVQEVRRLLHRELVHP---DALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHH--HHTCHHHHHHHHHTTCCCT---TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             HHHHHH--HcCCHHHHHHHHHhCCCCC---CccCCCCCccccccc-cccccccccccccccc-ccccccccccccccccc
Confidence            489999  67999999988865 4444   777899999999987 5889999999999887 67788999999999999


Q ss_pred             cCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCC
Q 037143          119 NRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGK  198 (382)
Q Consensus       119 ~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~  198 (382)
                      .++.++++.+++.+    .++|.+|.+|+||||+|+..|+.++++                .+.   ...+++.+|.+|+
T Consensus        78 ~~~~~~~~~~l~~~----~~~n~~~~~~~t~L~~A~~~~~~~i~~----------------~L~---~~~~~~~~d~~G~  134 (156)
T d1bd8a_          78 TGFLDTLKVLVEHG----ADVNVPDGTGALPIHLAVQEGHTAVVS----------------FLA---AESDLHRRDARGL  134 (156)
T ss_dssp             TTCHHHHHHHHHTT----CCSCCCCTTSCCHHHHHHHHTCHHHHH----------------HHH---TTSCTTCCCTTSC
T ss_pred             cccccccccccccc----cccccccCCCCeeeccccccccccccc----------------ccc---ccccccccCCCCC
Confidence            99999999999998    689999999999999999999965532                111   2334678999999


Q ss_pred             Cccccchhh-hHHHHH
Q 037143          199 TPDEVFTES-HRDLVK  213 (382)
Q Consensus       199 Tpldla~~~-~~~l~~  213 (382)
                      ||+++|.+. +.++++
T Consensus       135 TpL~~A~~~g~~~iv~  150 (156)
T d1bd8a_         135 TPLELALQRGAQDLVD  150 (156)
T ss_dssp             CHHHHHHHSCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHH
Confidence            999998775 344433

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.8e-20  Score=176.21  Aligned_cols=149  Identities=15%  Similarity=0.089  Sum_probs=117.1

Q ss_pred             CCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHH
Q 037143           37 GQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLA  116 (382)
Q Consensus        37 G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A  116 (382)
                      |.||||+|+  ..++.++++.+.+.+...   +..+..|.||||.|++.++.+++++|++.+.+ ++..+..+.||||.+
T Consensus       231 ~~t~l~~a~--~~~~~~~~~~~~~~~~~~---~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~  304 (408)
T d1n11a_         231 GVTPLHLAA--QEGHAEMVALLLSKQANG---NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVA  304 (408)
T ss_dssp             CCCHHHHHH--HTTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHH
T ss_pred             CCCHHHHHH--HhCcHhHhhhhhcccccc---ccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhh
Confidence            455555555  445555666666655443   55677899999999999999999999998877 677788999999999


Q ss_pred             HHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCC
Q 037143          117 IENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDD  196 (382)
Q Consensus       117 ~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~  196 (382)
                      +..++.++++++++.|    +++|.+|.+|+||||+|++.|+.++++.               .++..   .+++.+|++
T Consensus       305 ~~~~~~~~~~~ll~~g----~~in~~d~~G~T~Lh~A~~~g~~~iv~~---------------Ll~~G---Ad~n~~d~~  362 (408)
T d1n11a_         305 SHYGNIKLVKFLLQHQ----ADVNAKTKLGYSPLHQAAQQGHTDIVTL---------------LLKNG---ASPNEVSSD  362 (408)
T ss_dssp             HHSSCSHHHHHHHHTT----CCTTCCCTTSCCHHHHHHHTTCHHHHHH---------------HHHTT---CCSCCCCSS
T ss_pred             cccCcceeeeeecccc----ccccccCCCCCCHHHHHHHcCCHHHHHH---------------HHHCC---CCCCCCCCC
Confidence            9999999999999988    7999999999999999999999665432               23332   346799999


Q ss_pred             CCCccccchhh-hHHHHH
Q 037143          197 GKTPDEVFTES-HRDLVK  213 (382)
Q Consensus       197 G~Tpldla~~~-~~~l~~  213 (382)
                      |+||+++|.+. |.++++
T Consensus       363 G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         363 GTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             SCCHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHH
Confidence            99999999876 445444

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-20  Score=164.27  Aligned_cols=139  Identities=14%  Similarity=0.002  Sum_probs=106.0

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCC--------------ch---------------
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPS--------------TY---------------   64 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~--------------~~---------------   64 (382)
                      ..++++.|+++  ++..+. +..|.+|++.|..  .++.+.++......              ..               
T Consensus        52 ~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  127 (228)
T d1k1aa_          52 LPSVVRLLVTA--GASPMALDRHGQTAAHLACE--HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ  127 (228)
T ss_dssp             CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH--TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             ccccccccccc--cccccccccccccccccccc--cccccchhhhhhccccccccccccccccccccccccccccchhhh
Confidence            46899999998  666654 4459999999873  33333221110000              00               


Q ss_pred             ------hhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccc
Q 037143           65 ------KKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTI  138 (382)
Q Consensus        65 ------~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  138 (382)
                            .......+..|.+|||.|+..+..++++.+++.+.+ .+.+|..|+||||+|+..|+.+++++|++.|    ++
T Consensus       128 ~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G----ad  202 (228)
T d1k1aa_         128 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSG----AD  202 (228)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT----CC
T ss_pred             hhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHCC----CC
Confidence                  000122345789999999999999999999998766 6778999999999999999999999999999    79


Q ss_pred             cccccCCCCCHHHHHHhhCCCCcc
Q 037143          139 FWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus       139 ~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      +|.+|.+|+||||+|+++|+.+++
T Consensus       203 ~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         203 SSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             TTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhCCCcccc
Confidence            999999999999999998875553

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.3e-20  Score=147.16  Aligned_cols=108  Identities=14%  Similarity=0.021  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCC-cHHHHHHHcCcHHHH
Q 037143           14 WAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKE-TPILVAAKMGVTEMV   91 (382)
Q Consensus        14 ~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~-tpLh~Aa~~g~~~~v   91 (382)
                      ..+|++++|+++  |.+.+. +..|+||||.|+   .++.+++++|++.+++.   +.++..|. ||||+||+.|+.+++
T Consensus        14 G~~~~v~~Ll~~--gad~n~~~~~g~t~l~~a~---~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~L~~A~~~g~~~~v   85 (125)
T d1bi7b_          14 GRVEEVRALLEA--GANPNAPNSYGRRPIQVMM---MGSARVAELLLLHGAEP---NCADPATLTRPVHDAAREGFLDTL   85 (125)
T ss_dssp             TCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC---TTCHHHHHHHHTTTCCC---CCCCTTTCCCHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHHHc--CCccccccccccccccccc---ccccccccccccccccc---cccccccccccccccccccccccc
Confidence            357899999998  666665 455999999876   47899999999998876   66666665 699999999999999


Q ss_pred             HHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 037143           92 KKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLS  130 (382)
Q Consensus        92 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  130 (382)
                      ++|++.+.+ ++.+|.+|+||||+|+++|+.+++++|++
T Consensus        86 ~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          86 VVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999887 78899999999999999999999999975

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.7e-20  Score=163.17  Aligned_cols=140  Identities=14%  Similarity=0.063  Sum_probs=117.1

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCch---hhhhhhccCCCCcHHHHHHHcCcHHH
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTY---KKKNARRSRRKETPILVAAKMGVTEM   90 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~g~tpLh~Aa~~g~~~~   90 (382)
                      ..+++++|+++  +.+.+. |..|+||||+|+  ..++.++++.|++.+..   ..........|.||||.|+..|+.++
T Consensus        51 ~~~iv~~L~~~--g~d~~~~d~~g~t~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  126 (221)
T d1iknd_          51 QPEIAEALLGA--GCDPELRDFRGNTPLHLAC--EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI  126 (221)
T ss_dssp             CHHHHHCCCSC--CCCSCCCCTTCCCHHHHHH--HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccccc--ccccccccccccccccccc--ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhh
Confidence            36799999998  666665 455999999999  67888888887765432   11224445668999999999999999


Q ss_pred             HHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcc
Q 037143           91 VKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPL  162 (382)
Q Consensus        91 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~  162 (382)
                      ++.|++.++......+.+|+||||+|++.|+.+++++|++.|    ++++.+|.+|+||||+|+..++.+++
T Consensus       127 ~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g----ad~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         127 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG----ADVNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT----CCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             eeeecccCcccccccccCCCCccccccccccHHHHHHHHhcC----CcccccCCCCCCHHHHHHHCCCHHHH
Confidence            999999988866666778999999999999999999999998    79999999999999999999886553

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4e-20  Score=176.73  Aligned_cols=136  Identities=17%  Similarity=0.132  Sum_probs=120.6

Q ss_pred             HHHHHHHHcCCCCCCcc-cccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHH
Q 037143           16 IQVLNELVDHRNPDQYK-YVYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKI   94 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~-~~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L   94 (382)
                      .++++.+++.  ....+ .+.+|.||||.|+  ..++.+++++|++.+++.   +..+..+.||||.|+..|+.++++.+
T Consensus       244 ~~~~~~~~~~--~~~~~~~~~~g~~~l~~a~--~~~~~~i~~~Ll~~g~~~---~~~~~~~~t~L~~~~~~~~~~~~~~l  316 (408)
T d1n11a_         244 AEMVALLLSK--QANGNLGNKSGLTPLHLVA--QEGHVPVADVLIKHGVMV---DATTRMGYTPLHVASHYGNIKLVKFL  316 (408)
T ss_dssp             HHHHHHHHTT--TCCTTCCCTTCCCHHHHHH--HHTCHHHHHHHHHHTCCT---TCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred             HhHhhhhhcc--ccccccccCCCCChhhhhh--hcCcHHHHHHHHHCCCcc---ccccccccccchhhcccCcceeeeee
Confidence            5778888887  44444 4556999999999  778999999999888765   67777899999999999999999999


Q ss_pred             hhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143           95 LDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus        95 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      ++.+.+ ++.+|.+|+||||+|++.|+.++|++|+++|    +++|.+|++|+||||+|+..|+.++++
T Consensus       317 l~~g~~-in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G----Ad~n~~d~~G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         317 LQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG----ASPNEVSSDGTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT----CCSCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             cccccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            998877 6889999999999999999999999999999    799999999999999999999976653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=7.1e-20  Score=152.74  Aligned_cols=86  Identities=14%  Similarity=0.121  Sum_probs=77.1

Q ss_pred             cCCCCcHHHHHHHc---CcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCC
Q 037143           72 SRRKETPILVAAKM---GVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNS  148 (382)
Q Consensus        72 ~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~T  148 (382)
                      +..|+||||+|++.   |+.+++++|++.+++ ++.+|.+|+||||+|+..|+.+++++|++.|    ++++.+|.+|.|
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g----ad~~~~d~~g~t  116 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTDNAECLKLLLRGK----ASIEIANESGET  116 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCC
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccccccccccccccccccccC----ccccccCCCCCC
Confidence            45689999999974   678999999999887 6889999999999999999999999999998    789999999999


Q ss_pred             HHHHHHhhCCCCcc
Q 037143          149 ALHLAAKYGDHLPL  162 (382)
Q Consensus       149 pLH~A~~~g~~~~~  162 (382)
                      |||+|+..|+.+++
T Consensus       117 pL~~A~~~~~~~i~  130 (154)
T d1dcqa1         117 PLDIAKRLKHEHCE  130 (154)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHH
Confidence            99999999986664

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=9.7e-20  Score=158.36  Aligned_cols=130  Identities=19%  Similarity=0.148  Sum_probs=107.6

Q ss_pred             cccccCCCCCchhhhhhh-ccCCCCcHHHHHHHcCcHHHHHHHhhhCCC-------------------------------
Q 037143           53 TARETPLDPSTYKKKNAR-RSRRKETPILVAAKMGVTEMVKKILDTFPV-------------------------------  100 (382)
Q Consensus        53 ~~v~~Ll~~~~~~~~~~~-~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~-------------------------------  100 (382)
                      ++|++|+++|++.   +. .|.+|.||||+||+.|+.+++++|++.+++                               
T Consensus         3 ~~v~~Ll~~g~di---n~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLAQGAEL---NATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHCCCCc---CcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence            6889999999876   44 467899999999999999999999987543                               


Q ss_pred             -----------------------------------CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCC
Q 037143          101 -----------------------------------AMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQ  145 (382)
Q Consensus       101 -----------------------------------~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~  145 (382)
                                                         .++.+|..|+||||.|+..++.++++.+++.+    .+++.+|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~----~~~~~~d~~  155 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH----ANRDAQDDK  155 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTT
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccc----ccccccccc
Confidence                                               23456788999999999999999999999998    688999999


Q ss_pred             CCCHHHHHHhhCCCCccccCcchhhhHHHHHHHHHHHhhccccccccccCCCCCccccchhh
Q 037143          146 GNSALHLAAKYGDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYNDDGKTPDEVFTES  207 (382)
Q Consensus       146 G~TpLH~A~~~g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N~~G~Tpldla~~~  207 (382)
                      |+||||.|+..|+.++++.               .++.   +.+++.+|++|+||+++|.++
T Consensus       156 g~TpL~~A~~~g~~~~v~~---------------Ll~~---gad~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKA---------------LLDN---FANREITDHMDRLPRDVASER  199 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHH---------------HHHT---TCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccchhccccHHHHHHH---------------HHHC---CCCCCCcCCCCCCHHHHHHHc
Confidence            9999999999999766432               2222   234678999999999998776

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.76  E-value=2.4e-21  Score=183.24  Aligned_cols=120  Identities=11%  Similarity=0.026  Sum_probs=92.8

Q ss_pred             HHHHhHHHHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcC
Q 037143            8 KKETYTWAIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMG   86 (382)
Q Consensus         8 ~k~~~~~~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g   86 (382)
                      -..+|...+++++.|+++  +++.+. |.+|+||||+||  +.|+.+++++|++.|++....+ .+.+|+||||+||++|
T Consensus        98 a~~g~~~~~~~~~~L~~~--~~~in~~~~~g~taL~~Aa--~~G~~~~v~~Ll~~g~~~~~~~-~~~~g~t~L~~Aa~~g  172 (346)
T d2ajaa1          98 AITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAA--ENGHLHVLNRLCELAPTEIMAM-IQAENYHAFRLAAENG  172 (346)
T ss_dssp             HHHCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHH--HTTCHHHHHHHHHSCTTTHHHH-HSHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHhC--CCcccccCCCCCCHHHHHH--HCCCHHHHHHHHHcCCCccccc-cccCCCChhHHHHHHh
Confidence            344455667778888888  777764 556999999999  8899999999999988752222 2345899999999999


Q ss_pred             cHHHHHHHhhhCCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143           87 VTEMVKKILDTFPVA--MWDLDPAEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus        87 ~~~~v~~Ll~~~~~~--~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      +.++|++|++.+++.  .+..+.+|.||+|.|+++|+.+++++|++.|
T Consensus       173 ~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         173 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             CHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             hHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            999999999987653  2334556788889999999999999998764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.9e-19  Score=158.81  Aligned_cols=83  Identities=19%  Similarity=0.186  Sum_probs=76.8

Q ss_pred             hhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCccccccccccCCCC
Q 037143           69 ARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSR-KALGQTIFWQVDNQGN  147 (382)
Q Consensus        69 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~D~~G~  147 (382)
                      +.+|..|+||||+|+..|+.++++.|++.++..++.+|.+|+||||+|+..|+.+++++|+++ |    ++++.+|.+|+
T Consensus       132 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g----ad~~~~d~~g~  207 (229)
T d1ixva_         132 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG----AEYDLVDNKGA  207 (229)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----CCSCCCCTTSC
T ss_pred             cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcC----CCCCCcCCCCC
Confidence            456788999999999999999999999998777888999999999999999999999999975 6    79999999999


Q ss_pred             CHHHHHHh
Q 037143          148 SALHLAAK  155 (382)
Q Consensus       148 TpLH~A~~  155 (382)
                      ||||+|+.
T Consensus       208 t~l~~A~~  215 (229)
T d1ixva_         208 KAEDVALN  215 (229)
T ss_dssp             CTGGGCSC
T ss_pred             CHHHHHhh
Confidence            99999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=4e-19  Score=148.12  Aligned_cols=111  Identities=11%  Similarity=-0.014  Sum_probs=92.8

Q ss_pred             HHHHHHHHcCCCCCCcc-------cccCCCCCccccccc-CCCcccccccCCCCCchhhhhhhccCCCCcHHHHHHHcCc
Q 037143           16 IQVLNELVDHRNPDQYK-------YVYNGQDPRISTFGQ-DVNAFTARETPLDPSTYKKKNARRSRRKETPILVAAKMGV   87 (382)
Q Consensus        16 ~eiv~~Ll~~~~~~~~~-------~~~~G~TPLh~A~~~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~   87 (382)
                      ++.+..++..  +.+..       .+..|+||||+|+.. ..++.+++++|++.|++.   +.+|..|+||||+||..|+
T Consensus        19 l~~l~~~~~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi---n~~d~~g~TpLh~A~~~~~   93 (154)
T d1dcqa1          19 IFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL---DKQTGKGSTALHYCCLTDN   93 (154)
T ss_dssp             HHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT---TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHc--CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh---hhhhhhhcccccccccccc
Confidence            4556666666  33222       244599999999942 246788999999998876   8889999999999999999


Q ss_pred             HHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 037143           88 TEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRK  132 (382)
Q Consensus        88 ~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  132 (382)
                      .+++++|++.+++ ++.+|.+|+||||+|++.|+.+++++|++.+
T Consensus        94 ~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          94 AECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999999888 6889999999999999999999999999865

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.4e-19  Score=141.58  Aligned_cols=106  Identities=17%  Similarity=0.107  Sum_probs=89.5

Q ss_pred             cHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhh
Q 037143           77 TPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKY  156 (382)
Q Consensus        77 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~  156 (382)
                      ++||.||..|+.++|+.|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.+    +++|.+|.+|+||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g----~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFG----VNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT----CCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-ccccccccccccccccccccccccccccccc----cccccccccCcccccccchh
Confidence            689999999999999999999887 7889999999999999999999999999998    79999999999999999999


Q ss_pred             CCCCccccCcchhhhHHHHHHHHHHHhhcccccccccc-CCCCCccccch
Q 037143          157 GDHLPLLFPGAALQVQWEIKWFQHVKKLMPRHFFTRYN-DDGKTPDEVFT  205 (382)
Q Consensus       157 g~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~N-~~G~Tpldla~  205 (382)
                      |+.++++.               .++.   +.+++.+| ++|+||++++.
T Consensus        78 g~~~~v~~---------------Ll~~---ga~v~~~~~~~~~~~~~~~~  109 (130)
T d1ycsb1          78 NNVQVCKF---------------LVES---GAAVFAMTYSDMQTAADKCE  109 (130)
T ss_dssp             TCHHHHHH---------------HHHT---TCCTTCCCSSSCCCHHHHCC
T ss_pred             hHHHHHHH---------------HHHc---CCCcccccCCCCCCHHHHHH
Confidence            99766432               1222   22344554 56899988764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=6.9e-19  Score=160.78  Aligned_cols=80  Identities=20%  Similarity=0.160  Sum_probs=74.8

Q ss_pred             ccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHH
Q 037143           71 RSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLDPAEKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSAL  150 (382)
Q Consensus        71 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpL  150 (382)
                      .+..|.||||.|+..|+.++++.|++.+++ ++.+|.+|+||||+|++.|+.++|++|+++|    +++|.+|++|+|||
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~G----adv~~~d~~G~TaL  269 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENL----CDMEAVNKVGQTAF  269 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCTTSCCTT
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCC----CCCCCcCCCCCCHH
Confidence            356799999999999999999999999887 6788999999999999999999999999999    79999999999999


Q ss_pred             HHHHh
Q 037143          151 HLAAK  155 (382)
Q Consensus       151 H~A~~  155 (382)
                      |+|++
T Consensus       270 ~~A~e  274 (291)
T d1s70b_         270 DVADE  274 (291)
T ss_dssp             TSCCS
T ss_pred             HHHHH
Confidence            99974

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=9.9e-19  Score=161.61  Aligned_cols=126  Identities=12%  Similarity=0.068  Sum_probs=93.6

Q ss_pred             HHHHHHHHHcCCCCCCccc-ccCCCCCcccccccCCCc---c----cccccCCCCCchhhhhhhccCCCCcHHHHHHHcC
Q 037143           15 AIQVLNELVDHRNPDQYKY-VYNGQDPRISTFGQDVNA---F----TARETPLDPSTYKKKNARRSRRKETPILVAAKMG   86 (382)
Q Consensus        15 ~~eiv~~Ll~~~~~~~~~~-~~~G~TPLh~A~~~~~~~---~----~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g   86 (382)
                      ..++|++||++  |++.+. |..|+||||.|+.  .++   .    ++++++..   ..   ...|..|+||||.|+..+
T Consensus       119 ~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~--~~~~~~~~~~~~ll~~l~~---~~---~~~d~~g~t~lh~~~~~~  188 (301)
T d1sw6a_         119 NLELVKHLVKH--GSNRLYGDNMGESCLVKAVK--SVNNYDSGTFEALLDYLYP---CL---ILEDSMNRTILHHIIITS  188 (301)
T ss_dssp             CHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHH--SSHHHHTTCHHHHHHHHGG---GG---GEECTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHC--CCCCCcCCcccccHHHHhhh--cccchhhhhHHHHHHHHhh---hh---hhcccccCCHHHHHHHHh
Confidence            36899999999  677665 4559999999994  332   1    23333322   12   556788999999988655


Q ss_pred             c----HH--------HHHHHhhhCCC------------------------------------CccccCCCCCcHHHHHHH
Q 037143           87 V----TE--------MVKKILDTFPV------------------------------------AMWDLDPAEKNILLLAIE  118 (382)
Q Consensus        87 ~----~~--------~v~~Ll~~~~~------------------------------------~~~~~d~~G~t~Lh~A~~  118 (382)
                      .    .+        +++.+++.+..                                    .++.+|.+|+||||+|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~  268 (301)
T d1sw6a_         189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR  268 (301)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHH
Confidence            4    22        23333333211                                    146679999999999999


Q ss_pred             cCCHHHHHHHHhCCCccccccccccCCCCCHHHHHH
Q 037143          119 NRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAA  154 (382)
Q Consensus       119 ~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~  154 (382)
                      .|+.++|++|++.|    ++++.+|++|.||||+|+
T Consensus       269 ~g~~~iv~~Ll~~G----Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         269 LGNISIVDALLDYG----ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HCCHHHHHHHHHTT----CCTTCCCTTSCCGGGGTC
T ss_pred             cCCHHHHHHHHHCC----CCCCCCCCCCCCHHHHcC
Confidence            99999999999999    899999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.70  E-value=4.3e-20  Score=174.43  Aligned_cols=123  Identities=13%  Similarity=-0.012  Sum_probs=98.2

Q ss_pred             ccCCCCCcccccccCCCcccc---cccCCCCCchhhhhhhccCCCCcHHHHHHHcCcHHHHHHHhhhCCCCccccC--CC
Q 037143           34 VYNGQDPRISTFGQDVNAFTA---RETPLDPSTYKKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAMWDLD--PA  108 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~---v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--~~  108 (382)
                      +..|+||||+|+  +.|+.++   +++|++.+++.   +..|.+|+||||+||+.|+.++|++|++.+++ ++..|  .+
T Consensus        87 ~~~~~t~L~~Aa--~~g~~~~~~~~~~L~~~~~~i---n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-~~~~~~~~~  160 (346)
T d2ajaa1          87 GIKSEVICFVAA--ITGCSSALDTLCLLLTSDEIV---KVIQAENYQAFRLAAENGHLHVLNRLCELAPT-EIMAMIQAE  160 (346)
T ss_dssp             TCCHHHHHHHHH--HHCCHHHHHHHTTC--CCSSC---C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-THHHHHSHH
T ss_pred             cCCCCcHHHHHH--HhCCHHHHHHHHHHHhCCCcc---cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccccC
Confidence            446999999999  7788655   46688888776   77788899999999999999999999999887 44444  46


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCccc
Q 037143          109 EKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLL  163 (382)
Q Consensus       109 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~  163 (382)
                      |+||||+|+++|+.++|++|++.+.. ..+.+.++.+|.||+|.|+.+|+.++++
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~~~~t~l~~A~~~g~~~iv~  214 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVIN  214 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCc-ccccccccCCCcchhhHHhhcCHHHHHH
Confidence            99999999999999999999998831 1234566677888999999999977754

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.3e-16  Score=144.50  Aligned_cols=122  Identities=16%  Similarity=0.131  Sum_probs=100.2

Q ss_pred             ccCCCCCcccccccCCCcccccccCCCC-CchhhhhhhccCCCCcHHHHHHHcC----cHHHHHHHhhhCCCCccccCCC
Q 037143           34 VYNGQDPRISTFGQDVNAFTARETPLDP-STYKKKNARRSRRKETPILVAAKMG----VTEMVKKILDTFPVAMWDLDPA  108 (382)
Q Consensus        34 ~~~G~TPLh~A~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~tpLh~Aa~~g----~~~~v~~Ll~~~~~~~~~~d~~  108 (382)
                      +..|.||||+|+  ..++.+++++|++. +.+.   +..+..|.++++.+...+    ..++++.|++.+++ ++.+|..
T Consensus       145 ~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~  218 (285)
T d1wdya_         145 RKGGATALMDAA--EKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGER  218 (285)
T ss_dssp             TCCCCCHHHHHH--HHTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTT
T ss_pred             cccCchHHHHHH--HcCCHHHHHHHHhccCCCc---ccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCC
Confidence            344999999999  77889999988854 5544   677788888888765433    45789999998877 6778899


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCccccccccccCCCCCHHHHHHhhCCCCcccc
Q 037143          109 EKNILLLAIENRRTSVYNLLLSRKALGQTIFWQVDNQGNSALHLAAKYGDHLPLLF  164 (382)
Q Consensus       109 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~D~~G~TpLH~A~~~g~~~~~~~  164 (382)
                      |+||||+|++.|+.+++++|++..   +.++|.+|.+|+||||+|++.|+.+++++
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~~---g~din~~d~~G~TpL~~A~~~~~~eiv~~  271 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSS---SCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCccchhhhcCcHHHHHHHHHcC---CCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999999999864   27899999999999999999999888764