Citrus Sinensis ID: 037146

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MRHLRFITLHVSRNFKSSLQNPRSATNSHLLNRISARDYCTPSQEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccEEEEcccccccHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHcccEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccccccccHHHcccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHcccccccccccccccccccccHcHHHHHccEEEEEEEcccHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHccEEEEc
Coil and Loop (DISEMBL)
MRHLRFITLHVSRNfksslqnprsatnSHLLnrisardyctpsqepsekVASIVDEISCLSLVEVMDLADVVRNklgikempnmcvmmpgmgfsvkgatarggtgtgkaeEKVEKTVFDLKLAGYGAEAKLKVIKEVRGftglglkeSKELVEKVPTLlkrgvtkdEADKIVAKLKEVGAQVSME
Flexible Loop (DISEMBL)
mrhlrfitlhvsrnfksslqnprsatnshllnriSARDYCTPSQEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGgtgtgkaeekvEKTVFDLKlagygaeaklkvIKEVRGftglglkeskelvekvptllkrgvtkdeadKIVAKLkevgaqvsme
Low Complexity Region (SEG)
MRHLRFITLHVSRNFKSSLQNPRSATNSHLLNRISARDYCTPSQEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSvkgatarggtgtgkaeekvektvFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME
Disordered region (IsUnstruct)
*****FITLHV**************************************VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGAT*************VEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVT*********************
Disordered Region (DISOPRED)
*************************************************VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVM***************************KTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME
Disordered Region (DISEMBL)
MRHLRFITLHVSRNFKSSLQNPRSATNSHLLNRISARD***********VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGAT***********EKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME
Disordered Region (DISPRO)
********LHVSRNFKSSL************************QEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPG**********************VEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRHLRFITLHVSRNFKSSLQNPRSATNSHLLNRISARDYCTPSQEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
P53163	194	54S ribosomal protein L12	yes	no	0.740	0.706	0.394	4e-16
B3EER1	125	50S ribosomal protein L7/	yes	no	0.659	0.976	0.4	1e-15
A8ZV50	128	50S ribosomal protein L7/	yes	no	0.648	0.937	0.398	7e-15
P02395	118	50S ribosomal protein L7/	yes	no	0.378	0.593	0.633	2e-14
Q211D7	123	50S ribosomal protein L7/	yes	no	0.627	0.943	0.431	4e-14
B1HMZ8	119	50S ribosomal protein L7/	yes	no	0.378	0.588	0.619	6e-14
A7GK11	119	50S ribosomal protein L7/	yes	no	0.378	0.588	0.591	6e-14
A6X0A8	124	50S ribosomal protein L7/	yes	no	0.648	0.967	0.4	8e-14
A5VR16	124	50S ribosomal protein L7/	yes	no	0.648	0.967	0.4	9e-14
A6LKB9	129	50S ribosomal protein L7/	yes	no	0.670	0.961	0.428	1e-13

>sp|P53163|MNP1_YEAST 54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MNP1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 5/142 (3%)

Query: 49  KVASIVDEISCLSLVEVMDLADVVRNKLGIKE--MPNMCVMMPGMGF---SVKGATARGG 103
           K++ IV +IS L+L+E   L + ++  L I E  MP    M    G    +V  +T   G
Sbjct: 53  KISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFMAGAAGAGAGNVPSSTGEAG 112

Query: 104 TGTGKAEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGV 163
           +G  +  +   KTVF +KL  +  + K KVIKEV+G  GL L E+K+ VE  P +LK  V
Sbjct: 113 SGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVLKENV 172

Query: 164 TKDEADKIVAKLKEVGAQVSME 185
            KD+A+KI   L+++GA+VS+E
Sbjct: 173 AKDDAEKIKKTLEDLGAKVSLE 194

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B3EER1|RL7_CHLL2 50S ribosomal protein L7/L12 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rplL PE=3 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 77/135 (57%), Gaps = 13/135 (9%)

Query: 50  VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKA 109
           + ++V+EI  L+L E  +L   +  K G+   P +          V G  +    G   A
Sbjct: 3   IETLVEEIGKLTLTEASELVKALEEKFGVSAAPAI----------VAGIASAAPAGDAPA 52

Query: 110 EEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEAD 169
           +E  EKT FD+ L   G E+K+ VIK VR  TGLGLKE+K+LV+  P  +K  V+KDEA+
Sbjct: 53  QE--EKTEFDVVLTSAG-ESKINVIKVVRALTGLGLKEAKDLVDGAPKTVKEAVSKDEAE 109

Query: 170 KIVAKLKEVGAQVSM 184
           KI  +LK+VGA V +
Sbjct: 110 KIAKELKDVGAGVEL 124

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315)

>sp|A8ZV50|RL7_DESOH 50S ribosomal protein L7/L12 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplL PE=3 SV=1

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 13/133 (9%)

Query: 52  SIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEE 111
            ++D I+ ++++E+ +L   +  K G+     + +M  GM           G   G AEE
Sbjct: 8   DVIDFIANMTVLELSELITELEEKFGVSAAAPVAMMAGGM---------PAGGDAGAAEE 58

Query: 112 KVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKI 171
           K E   FD+ L   G + K++VIKEVR  TGLGLKE+K LVE+ P  +K GV KDEA+K+
Sbjct: 59  KTE---FDVVLLTSG-DKKIQVIKEVRAITGLGLKEAKALVEEAPKPVKEGVPKDEAEKL 114

Query: 172 VAKLKEVGAQVSM 184
            A+L+  GAQV +
Sbjct: 115 KAQLEGAGAQVEI 127

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Desulfococcus oleovorans (strain DSM 6200 / Hxd3) (taxid: 96561)

>sp|P02395|RL7_MICLU 50S ribosomal protein L7/L12 OS=Micrococcus luteus GN=rplL PE=1 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 55/71 (77%), Gaps = 1/71 (1%)

Query: 114 EKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVA 173
           EKT FD+ LA  GAE K+KVIK VR  TGLGLKE+KE+V+  P  LK GV+KDEA++I A
Sbjct: 48  EKTEFDVVLASAGAE-KIKVIKVVREITGLGLKEAKEVVDNAPKALKEGVSKDEAEEIKA 106

Query: 174 KLKEVGAQVSM 184
           KL+EVGA V +
Sbjct: 107 KLEEVGASVEV 117

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Micrococcus luteus (taxid: 1270)

>sp|Q211D7|RL7_RHOPB 50S ribosomal protein L7/L12 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplL PE=3 SV=1

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 16/132 (12%)

Query: 53  IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEK 112
           IVD++S L+++E  +LA ++  K G+               S   A A  G     A   
Sbjct: 7   IVDDLSSLTVLEAAELAKLLEEKWGV---------------SAAAAVAVAGPAAAAAAPA 51

Query: 113 VEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIV 172
            EKT F + LA  G E K++VIKEVR  TGLGLKE+K+LVE  P  +K GV KDEADKI 
Sbjct: 52  EEKTEFTVVLAAAG-EKKIEVIKEVRAITGLGLKEAKDLVEGAPKPVKEGVNKDEADKIK 110

Query: 173 AKLKEVGAQVSM 184
           A+L++ GA+V +
Sbjct: 111 AQLEKAGAKVEL 122

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Rhodopseudomonas palustris (strain BisB18) (taxid: 316056)

>sp|B1HMZ8|RL7_LYSSC 50S ribosomal protein L7/L12 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplL PE=3 SV=1

 Score = 77.0 bits (188), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 1/71 (1%)

Query: 114 EKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVA 173
           EKT FD+ LA  GAE K+KVIK VR  TGLGLKE+KE+V+  P  LK GV+KDEA++I  
Sbjct: 49  EKTEFDVVLASAGAE-KIKVIKVVREITGLGLKEAKEVVDNAPKALKEGVSKDEAEEIKT 107

Query: 174 KLKEVGAQVSM 184
           KL+EVGA V +
Sbjct: 108 KLEEVGASVEV 118

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Lysinibacillus sphaericus (strain C3-41) (taxid: 444177)

>sp|A7GK11|RL7_BACCN 50S ribosomal protein L7/L12 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplL PE=3 SV=1

 Score = 77.0 bits (188), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 114 EKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVA 173
           EKT FD++LA  GA+ K+KVIK VR  TGLGLKE+KELV+  P ++K G +K+EA++I A
Sbjct: 49  EKTEFDVELANAGAQ-KIKVIKVVREITGLGLKEAKELVDNTPKVIKEGASKEEAEEIKA 107

Query: 174 KLKEVGAQVSM 184
           KL+EVGA V +
Sbjct: 108 KLEEVGAAVEV 118

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Bacillus cereus subsp. cytotoxis (strain NVH 391-98) (taxid: 315749)

>sp|A6X0A8|RL7_OCHA4 50S ribosomal protein L7/L12 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplL PE=3 SV=1

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 77/135 (57%), Gaps = 15/135 (11%)

Query: 50  VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKA 109
           +A IVD++S L+++E  +L+ ++  K G+     + V   G       A           
Sbjct: 4   LAKIVDDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGAAPAAAAE---------- 53

Query: 110 EEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEAD 169
               EKT FD+ LA  GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K G +KDEA+
Sbjct: 54  ----EKTEFDVVLADGGAN-KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGASKDEAE 108

Query: 170 KIVAKLKEVGAQVSM 184
           KI A+L+  GA+V +
Sbjct: 109 KIKAQLEAAGAKVEL 123

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) (taxid: 439375)

>sp|A5VR16|RL7_BRUO2 50S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplL PE=3 SV=1

 Score = 76.6 bits (187), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 15/135 (11%)

Query: 50  VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKA 109
           +A IV+++S L+++E  +L+ ++  K G+     + V   G       A           
Sbjct: 4   LAKIVEDLSALTVLEAAELSKLLEEKWGVSAAAPVAVAAAGGAAPAAAAE---------- 53

Query: 110 EEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEAD 169
               EKT FD+ LA  GA  K+ VIKEVR  TGLGLKE+K+LVE  P  +K GV+KDEA+
Sbjct: 54  ----EKTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGVSKDEAE 108

Query: 170 KIVAKLKEVGAQVSM 184
           KI A+L+  GA+V +
Sbjct: 109 KIKAQLEAAGAKVEL 123

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) (taxid: 444178)

>sp|A6LKB9|RL7_THEM4 50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplL PE=3 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 84/140 (60%), Gaps = 16/140 (11%)

Query: 48  EKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTG 107
           EK+  IV+EI  L++ E+ +L  ++ +K G+          P M   V GA A GG    
Sbjct: 2   EKLEQIVNEIEQLTVAELAELVKMLEDKFGV------SASAPVMAMPVAGAAAGGGAAAE 55

Query: 108 KAEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPT---LLKRGVT 164
                 EKT FD+ L  +GA+ K+ VIK VR  TGLGLKE+K+LVEK  T   ++K+GV 
Sbjct: 56  ------EKTEFDVVLKSFGAK-KINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVN 108

Query: 165 KDEADKIVAKLKEVGAQVSM 184
           KDEA++I  KL+E GA+V +
Sbjct: 109 KDEAEEIKKKLEEAGAEVEL 128

Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation.

Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
255560996	192	50S ribosomal protein L7/L12, putative [	0.989	0.953	0.597	7e-49
225431267	189	PREDICTED: 60 ribosomal protein L12, mit	0.989	0.968	0.528	3e-42
224094877	147	predicted protein [Populus trichocarpa]	0.751	0.945	0.654	4e-39
297798266	179	ribosomal protein L12 family protein [Ar	0.967	1.0	0.524	2e-38
15234393	179	Ribosomal protein L12 family protein [Ar	0.967	1.0	0.508	1e-37
356502962	199	PREDICTED: 54S ribosomal protein L12, mi	0.951	0.884	0.528	2e-36
356561191	194	PREDICTED: 50S ribosomal protein L7/L12-	0.994	0.948	0.502	2e-34
357518193	195	50S ribosomal protein L12-2 [Medicago tr	0.951	0.902	0.485	4e-33
449464534	202	PREDICTED: 54S ribosomal protein L12, mi	1.0	0.915	0.524	6e-33
388512781	217	unknown [Medicago truncatula]	0.745	0.635	0.528	1e-30

>gi|255560996|ref|XP_002521510.1| 50S ribosomal protein L7/L12, putative [Ricinus communis] gi|223539188|gb|EEF40781.1| 50S ribosomal protein L7/L12, putative [Ricinus communis]

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 116/194 (59%), Positives = 146/194 (75%), Gaps = 11/194 (5%)

Query: 1   MRHLRFITLHVSRNFKSSLQNPRSATNS------HLLNRIS--ARDYCTPSQEPSEKVAS 52
           MRH R I+ H+SR  K+  +NP     S      +L+ + +  A++   P+  PS+KVA+
Sbjct: 1   MRHFRLISPHLSRIRKTLFRNPTFNPQSTIPRSPNLIYQFTSIAQEPNPPA--PSDKVAA 58

Query: 53  IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFS-VKGATARGGTGTGKAEE 111
           +VDEIS L+L+E+ DL +V+RNKL IKEMP M VMMPGMGFS +KG    G  G  KAEE
Sbjct: 59  LVDEISELTLLEISDLTEVLRNKLDIKEMPVMAVMMPGMGFSGMKGGVKGGAAGAAKAEE 118

Query: 112 KVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKI 171
           KVEKTVFD+KL G+ A AK+KVIKEVRGFT LGLKE+K+LVEK PTLLK+GVTK+EA+KI
Sbjct: 119 KVEKTVFDVKLEGFDAAAKIKVIKEVRGFTDLGLKEAKDLVEKAPTLLKKGVTKEEAEKI 178

Query: 172 VAKLKEVGAQVSME 185
            AK+KEVGA+VSME
Sbjct: 179 TAKMKEVGAKVSME 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431267|ref|XP_002275239.1| PREDICTED: 60 ribosomal protein L12, mitochondrial [Vitis vinifera]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 129/191 (67%), Gaps = 8/191 (4%)

Query: 1   MRHLRFITLHVSRNFKSSL-QNPRSA----TNSHLLNRIS-ARDYCTPSQEPSEKVASIV 54
           MR+   I   +SRN K  + QNP        NSHL NR++    Y + +Q PSE+V+SIV
Sbjct: 1   MRYFGSIVPQLSRNLKLRITQNPTFCDSLNPNSHLWNRLNFVLKYTSSAQVPSERVSSIV 60

Query: 55  DEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVE 114
           DEIS L+L+EV DL +++R KL I EMP M VMMPGMGF V+GA            +  E
Sbjct: 61  DEISGLTLLEVSDLTELLRKKLDINEMPVMAVMMPGMGFGVRGAGGA--APKAAEVKAAE 118

Query: 115 KTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAK 174
           KT FDLKL  + A AK+K+IKEVR FT LGLKE+K+LVE  PTLLK+GV K+EA+ I+ K
Sbjct: 119 KTAFDLKLEAFDAAAKIKIIKEVRTFTDLGLKEAKDLVEHAPTLLKKGVPKEEAENIIEK 178

Query: 175 LKEVGAQVSME 185
           +K VGA+V+ME
Sbjct: 179 MKAVGAKVTME 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094877|ref|XP_002310275.1| predicted protein [Populus trichocarpa] gi|222853178|gb|EEE90725.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 114/142 (80%), Gaps = 3/142 (2%)

Query: 47  SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGT 106
           +++V+SIVDE+S L+L+EV DL +V+R KL IKEMP M VMMPGMGFS+      GG G 
Sbjct: 6   TDRVSSIVDELSKLTLLEVSDLTEVLRTKLEIKEMPVMAVMMPGMGFSMGAGMKGGGGGG 65

Query: 107 GKA---EEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGV 163
             A   EEKVEKTVFD+KL G+ A  K+KVIKEVRGFT LGLKE+K+LVEK PTLLK+GV
Sbjct: 66  AAAAKAEEKVEKTVFDVKLEGFDAAVKIKVIKEVRGFTDLGLKEAKDLVEKAPTLLKKGV 125

Query: 164 TKDEADKIVAKLKEVGAQVSME 185
           TKDEA+KI+ K+K VGA+V+ME
Sbjct: 126 TKDEAEKIIEKMKGVGAKVTME 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798266|ref|XP_002867017.1| ribosomal protein L12 family protein [Arabidopsis lyrata subsp. lyrata] gi|297312853|gb|EFH43276.1| ribosomal protein L12 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/185 (52%), Positives = 130/185 (70%), Gaps = 6/185 (3%)

Query: 1   MRHLRFITLHVSRNFKSSLQNPRSATNSHLLNRISARDYCTPSQEPSEKVASIVDEISCL 60
           MR+LR I+ H SR  KS   +P S   +HL + I +R Y +P+ + SE V+ IV+E+S L
Sbjct: 1   MRNLRIISSHFSRVLKSIETHPSS---NHLFS-IQSRSYSSPATQ-SENVSKIVNELSNL 55

Query: 61  SLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDL 120
           +L+E MDL +++R KL I E+P M  MMPGM F   GA  +   G GK ++K  KT FD+
Sbjct: 56  TLLETMDLTEILRQKLDISELPVMAAMMPGMSFPGSGA-GKSTGGEGKEKKKEAKTAFDV 114

Query: 121 KLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGA 180
            L  Y A +K+KVIKEVR  T LGLKE+K+LVEK PTLLK+GV+K+EA+KI+ KLK VGA
Sbjct: 115 MLQAYEAVSKIKVIKEVRTITDLGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGA 174

Query: 181 QVSME 185
           +V+ME
Sbjct: 175 KVAME 179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234393|ref|NP_195360.1| Ribosomal protein L12 family protein [Arabidopsis thaliana] gi|13878063|gb|AAK44109.1|AF370294_1 putative ribosomal protein [Arabidopsis thaliana] gi|4006919|emb|CAB16813.1| ribosomal protein [Arabidopsis thaliana] gi|7270590|emb|CAB80308.1| ribosomal protein [Arabidopsis thaliana] gi|15450415|gb|AAK96501.1| At4g36420/C7A10_940 [Arabidopsis thaliana] gi|17104653|gb|AAL34215.1| putative ribosomal protein [Arabidopsis thaliana] gi|332661254|gb|AEE86654.1| Ribosomal protein L12 family protein [Arabidopsis thaliana]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/185 (50%), Positives = 129/185 (69%), Gaps = 6/185 (3%)

Query: 1   MRHLRFITLHVSRNFKSSLQNPRSATNSHLLNRISARDYCTPSQEPSEKVASIVDEISCL 60
           MR+LR I+ H SR  KS+     + ++S  L  I +R Y +P+ + SE V+ IV+E+S L
Sbjct: 1   MRNLRIISSHFSRVLKST----ETRSSSVQLFTIQSRSYSSPATQ-SENVSKIVNELSNL 55

Query: 61  SLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDL 120
           +L+E MDL +++R KL I E+P M  MMPGM     GA+ +   G GK ++K  KT FD+
Sbjct: 56  TLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS-KSAGGEGKEKKKEAKTAFDV 114

Query: 121 KLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGA 180
            L  Y A +K+KVIKEVR  T LGLKE+K+LVEK PTLLK+GV+K+EA+KI+ KLK VGA
Sbjct: 115 MLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGA 174

Query: 181 QVSME 185
           +V+ME
Sbjct: 175 KVAME 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502962|ref|XP_003520283.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like [Glycine max]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 133/191 (69%), Gaps = 15/191 (7%)

Query: 10  HVSRNFKSSLQNPRSAT------NSHLLNRIS-ARDYCTPS----QEPSEKVASIVDEIS 58
           H+S   K+  + P++ T      + +L  R S ARDYC+       + SEKVA+IVDE+ 
Sbjct: 9   HLSHFLKTLTRRPQNPTFASARISQNLPPRPSHARDYCSSGGASLSQGSEKVAAIVDEVM 68

Query: 59  CLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFS---VKGATARGGTGTGKAEEKV-E 114
            L+L+EVMDL +V+R K G+ E+P   +M+PGMG      +GA   GG  TG AE K  E
Sbjct: 69  GLTLLEVMDLVEVMREKRGVNELPIAMLMVPGMGVPRGIPRGAAKGGGAATGGAEVKAAE 128

Query: 115 KTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAK 174
           KT FD+KL G+ A AK+KVIKEVR FT LGLKE+K+LVEKVP +LK+GVTK+EA+ I+AK
Sbjct: 129 KTAFDVKLEGFDAAAKIKVIKEVRTFTSLGLKEAKDLVEKVPAVLKKGVTKEEAESIIAK 188

Query: 175 LKEVGAQVSME 185
           +KEVGA+VSME
Sbjct: 189 MKEVGAKVSME 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561191|ref|XP_003548867.1| PREDICTED: 50S ribosomal protein L7/L12-like [Glycine max]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/189 (50%), Positives = 125/189 (66%), Gaps = 5/189 (2%)

Query: 1   MRHLRFITLHVSRNFKSSLQNPRSATNSHLLNRISARD---YCTPSQEPSEKVASIVDEI 57
            +HL      ++R    +  +PR + N   L    AR+         + SEKVA+IVDE+
Sbjct: 7   FKHLSHFLKTLTRPQNPTFVSPRISQNPRPLP-FHARECSSSSASQSQGSEKVAAIVDEL 65

Query: 58  SCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEK-VEKT 116
             L+L+EVMDL +V+R K G+ E+P   +M+PGMG         GG   G AE K VEKT
Sbjct: 66  MGLTLLEVMDLVEVMREKRGVNELPIAMLMVPGMGVPRGVPNGGGGGAAGVAEVKAVEKT 125

Query: 117 VFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLK 176
           VFD+KL G+ A  K+KVIKEVR FT LGLKE+K+LVEKVP +LK+GVTK+EA+ I+AK+K
Sbjct: 126 VFDVKLEGFDAATKIKVIKEVRTFTSLGLKEAKDLVEKVPAMLKKGVTKEEAESIIAKMK 185

Query: 177 EVGAQVSME 185
           EVGA+VSME
Sbjct: 186 EVGAKVSME 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518193|ref|XP_003629385.1| 50S ribosomal protein L12-2 [Medicago truncatula] gi|355523407|gb|AET03861.1| 50S ribosomal protein L12-2 [Medicago truncatula] gi|388508470|gb|AFK42301.1| unknown [Medicago truncatula]

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 129/204 (63%), Gaps = 28/204 (13%)

Query: 1   MRHLRFITLHVSRNFKSSLQNPRSAT-------------NSHLLNRISARDYCTPSQEPS 47
           M+  RF  L  S   K+ +QNP   +              SHL      R+Y T S    
Sbjct: 1   MKFSRF--LQFSHLRKTLIQNPNFLSPQIPKPYIIPPNPKSHL------RNYNTDSPN-H 51

Query: 48  EKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGF-----SVKGATARG 102
           E V++IV+E++ L+L+E MDL +V+R K GI E+P M +M+PGMG       V G    G
Sbjct: 52  ENVSAIVEELAGLTLIEAMDLVEVMREKKGINELPIMMLMVPGMGIRGMPRGVGGGKGGG 111

Query: 103 GTGTGKAEEKVE-KTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKR 161
           G+  G   +KVE KT FD+KL G+ A +K+KVIKEVR FT LGLKE+K+LVEK PTLLK+
Sbjct: 112 GSEKGGEVKKVEEKTAFDVKLDGFDAASKIKVIKEVRSFTSLGLKEAKDLVEKSPTLLKK 171

Query: 162 GVTKDEADKIVAKLKEVGAQVSME 185
           GVTK+EA+ I+AKLKEVGA+ SME
Sbjct: 172 GVTKEEAEGIIAKLKEVGAKASME 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464534|ref|XP_004149984.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like [Cucumis sativus] gi|449491404|ref|XP_004158886.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like isoform 1 [Cucumis sativus] gi|449491408|ref|XP_004158887.1| PREDICTED: 54S ribosomal protein L12, mitochondrial-like isoform 2 [Cucumis sativus]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 140/202 (69%), Gaps = 17/202 (8%)

Query: 1   MRHLRFITLHVSRNFKSSLQNPRSATNS--HL----------LNRISARDYCTPSQE--- 45
           MR+LR ++ H SR  K+  QNP S + S  H+           + ++ R+Y T S E   
Sbjct: 1   MRNLRILSPHFSRIRKTFAQNPSSDSPSTRHINFPGLETFASPSSVNHRNYTTASPESRP 60

Query: 46  -PSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGT 104
            PSE+V++IVDEIS L+L+EV DL +V+R KL +KEMP M +MMPGMGF       +GG 
Sbjct: 61  APSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMTMMMPGMGFGGFRGAGKGGP 120

Query: 105 GTGKAEEKVEK-TVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGV 163
           G    EEK E+ T FD+KL  + A +K+K+IKEVR FT LGLKE+K+LVEK PTLLK+GV
Sbjct: 121 GAKGVEEKKEEKTAFDVKLDAFDAASKIKIIKEVRTFTNLGLKEAKDLVEKAPTLLKKGV 180

Query: 164 TKDEADKIVAKLKEVGAQVSME 185
           TK+EA+ I+AK+KEVGA+VSME
Sbjct: 181 TKEEAETIIAKMKEVGAKVSME 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512781|gb|AFK44452.1| unknown [Medicago truncatula]

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 101/140 (72%), Gaps = 2/140 (1%)

Query: 46  PSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTG 105
           PSE+V  +VDE++ L+L E  +L   +  K+GIKEMPN+  M PG   ++ G  A+    
Sbjct: 80  PSERVFKLVDEVASLTLAEGAELGLTLMKKMGIKEMPNVGFMKPG-SVNLAGMAAKASI- 137

Query: 106 TGKAEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTK 165
             K E+K EKTVF+LKL  Y A +K+KVIKEVRGFT LGLKE+K+LVEK P+++K+GV+K
Sbjct: 138 EAKEEQKPEKTVFELKLTSYEAASKIKVIKEVRGFTDLGLKEAKDLVEKTPSIIKKGVSK 197

Query: 166 DEADKIVAKLKEVGAQVSME 185
           +E D+I+ KLK +GA V ME
Sbjct: 198 EEGDQIIEKLKALGAVVVME 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2115385	179	AT4G36420 [Arabidopsis thalian	0.967	1.0	0.464	4e-35
TAIR|locus:2020678	208	AT1G70190 [Arabidopsis thalian	0.756	0.673	0.408	3.6e-25
TAIR|locus:2080369	186	AT3G06040 [Arabidopsis thalian	0.767	0.763	0.377	4e-19
TAIR|locus:2120116	167	AT4G37660 [Arabidopsis thalian	0.762	0.844	0.352	2.2e-18
ASPGD|ASPL0000042202	184	AN2057 [Emericella nidulans (t	0.767	0.771	0.372	3.6e-18
CGD|CAL0006345	174	orf19.2275 [Candida albicans (	0.859	0.913	0.325	1.6e-17
UNIPROTKB|P0A7K2	121	rplL [Escherichia coli K-12 (t	0.362	0.553	0.529	3.2e-16
UNIPROTKB|P02394	123	rplL "50S ribosomal protein L7	0.362	0.544	0.588	5.4e-15
SGD|S000003036	194	MNP1 "Protein associated with	0.843	0.804	0.335	8.8e-15
GENEDB_PFALCIPARUM|PFB0545c	255	PFB0545c "ribosomal protein L7	0.367	0.266	0.323	9.8e-15

TAIR|locus:2115385 AT4G36420 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 86/185 (46%), Positives = 117/185 (63%)

Query:     1 MRHLRFITLHVSRNFKSSLQNPRSATNSHLLNRISARDYCTPSQEPSEKVASIVDEISCL 60
             MR+LR I+ H SR  KS+     + ++S  L  I +R Y +P+ + SE V+ IV+E+S L
Sbjct:     1 MRNLRIISSHFSRVLKST----ETRSSSVQLFTIQSRSYSSPATQ-SENVSKIVNELSNL 55

Query:    61 SLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDL 120
             +L+E MDL +++R KL I E+P M  MMPGM                          FD+
Sbjct:    56 TLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTA-FDV 114

Query:   121 KLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGA 180
              L  Y A +K+KVIKEVR  T LGLKE+K+LVEK PTLLK+GV+K+EA+KI+ KLK VGA
Sbjct:   115 MLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGA 174

Query:   181 QVSME 185
             +V+ME
Sbjct:   175 KVAME 179

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TAIR|locus:2020678 AT1G70190 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 58/142 (40%), Positives = 87/142 (61%)

Query:    46 PSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMG--FSXXXXXXXXX 103
             P+++V  +VDEIS L+L+E+ +L  ++  K G+ E+P + VM PG G             
Sbjct:    67 PTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGGGVGVGGGGGMVS 126

Query:   104 XXXXXXXXXXXXXXFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGV 163
                           F++KL  + A AK+K+IKE+R FT LGLKE+K LVEK P +LK G+
Sbjct:   127 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 186

Query:   164 TKDEADKIVAKLKEVGAQVSME 185
             +K+E +KI+ KLK +GA+V +E
Sbjct:   187 SKEEGEKILEKLKALGAKVVLE 208

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2080369 AT3G06040 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 57/151 (37%), Positives = 79/151 (52%)

Query:    35 SARDYCTPSQEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFS 94
             S  D   P  +PS K+  + + I+ LS  E   +   +   L + +     +   G+G  
Sbjct:    45 SVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQ--QMISSDGIG-- 100

Query:    95 XXXXXXXXXXXXXXXXXXXXXXXFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEK 154
                                    FD+KL  + A  K+KVIKEVR FT LGLKE+KELVEK
Sbjct:   101 -----AKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEK 155

Query:   155 VPTLLKRGVTKDEADKIVAKLKEVGAQVSME 185
             VP +LK+GVTK+EA++I+AK+K VG    ME
Sbjct:   156 VPAILKQGVTKEEANEIIAKIKAVGGIAVME 186

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2120116 AT4G37660 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 54/153 (35%), Positives = 85/153 (55%)

Query:    35 SARDYCT-PSQEP-SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMG 92
             + R  C   S E  ++K+  I D++  L+ +E+ D + +  +K+G+    +   +   +G
Sbjct:    25 ATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSAVAVTGSVG 84

Query:    93 FSXXXXXXXXXXXXXXXXXXXXXXXFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELV 152
                                      FD+KL  + A +K+KVIKE+R FT LGLKE+K LV
Sbjct:    85 ----------DASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALV 134

Query:   153 EKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 185
             EK P ++K G+TK+EA+KI+ KLK VGA V++E
Sbjct:   135 EKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

ASPGD|ASPL0000042202 AN2057 [Emericella nidulans (taxid:162425)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 54/145 (37%), Positives = 76/145 (52%)

Query:    42 PSQEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMP-NMCVMMPGMGFSXXXXXX 100
             P+   + K+  IVD+IS L+L+E  DL   ++++L I ++P     M PG G        
Sbjct:    42 PAAPANPKITQIVDQISQLNLLETADLVASLKSRLNIPDLPVGGFAMAPGAG--APGAAA 99

Query:   101 XXXXXXXXXXXXXXXXXFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLK 160
                              F+LKL    A  K KVIKEV+   GL L +SK+ VE VP +LK
Sbjct:   100 APAEEEEAAPPAQEKTLFNLKLESVDAAQKAKVIKEVKTLLGLSLVDSKKFVESVPKVLK 159

Query:   161 RGVTKDEADKIVAKLKEVGAQVSME 185
               V K+EA+K++  LK VGA+  ME
Sbjct:   160 ESVPKEEAEKLIETLKAVGAKAVME 184

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

CGD|CAL0006345 orf19.2275 [Candida albicans (taxid:5476)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 55/169 (32%), Positives = 89/169 (52%)

Query:    18 SLQNPRSATNSHLLNRISARDYCTPSQEPSE-KVASIVDEISCLSLVEVMDLADVVRNKL 76
             S+ + R A  +   N  +A     P++ P + K+ +IVD+IS L+L+E   L + ++ +L
Sbjct:    15 SVSSKRIAVTALRYNSTAAE----PAKAPVDAKITTIVDQISTLTLLETSQLINELKERL 70

Query:    77 GIKEMPNMCVMMPGMGFSXXXXXXXXXXXXXXXXXXXXXXXFDLKLAGYGAEAKLKVIKE 136
              I +     + +P  G                         F +KL  + A++K K+IKE
Sbjct:    71 NISD-----ISLPVGGAQAAPVAQAAPAEEEVKEEVEEKTIFSIKLESFDAKSKPKIIKE 125

Query:   137 VRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 185
             V+G  GL L ESK+ VE  P +LK  V K++A+KI A L+ +GA+VS+E
Sbjct:   126 VKGMLGLSLVESKKFVESAPKVLKENVAKEDAEKIKATLEGLGAKVSLE 174

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

UNIPROTKB|P0A7K2 rplL [Escherichia coli K-12 (taxid:83333)]

 Score = 168 (64.2 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
 Identities = 36/68 (52%), Positives = 48/68 (70%)

Query:   118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
             FD+ L   GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E
Sbjct:    55 FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEE 113

Query:   178 VGAQVSME 185
              GA+V ++
Sbjct:   114 AGAEVEVK 121

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P02394 rplL "50S ribosomal protein L7/L12" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 40/68 (58%), Positives = 53/68 (77%)

Query:   118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
             FDL LAG G++ K+KVIK VR  TGLGLKE+KELV+  P  LK G+ K+EA+++ AKL+E
Sbjct:    57 FDLILAGAGSQ-KIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEE 115

Query:   178 VGAQVSME 185
             VGA V ++
Sbjct:   116 VGASVEVK 123

GO:0005515 "protein binding" evidence=IPI

SGD|S000003036 MNP1 "Protein associated with the mitochondrial nucleoid" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 55/164 (33%), Positives = 79/164 (48%)

Query:    27 NSHLLNRISARDYCTPSQEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKE--MPNM 84
             NS      S +D   P  +P  K++ IV +IS L+L+E   L + ++  L I E  MP  
Sbjct:    34 NSTTTTAPSHKDDVRPV-DP--KISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMG 90

Query:    85 CVMMPGMGFSXXXXXXXXXXXXXXXXXXX---XXXXFDLKLAGYGAEAKLKVIKEVRGFT 141
               M    G                            F +KL  +  + K KVIKEV+G  
Sbjct:    91 GFMAGAAGAGAGNVPSSTGEAGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLL 150

Query:   142 GLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME 185
             GL L E+K+ VE  P +LK  V KD+A+KI   L+++GA+VS+E
Sbjct:   151 GLSLVEAKKFVEAAPKVLKENVAKDDAEKIKKTLEDLGAKVSLE 194

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0009060 "aerobic respiration" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GENEDB_PFALCIPARUM|PFB0545c PFB0545c "ribosomal protein L7/L12, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 128 (50.1 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
 Identities = 22/68 (32%), Positives = 45/68 (66%)

Query:   118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
             F++KL  +  + K+  IKE+R  T +GLKE+K++VE  P  +++ V  ++A+++    ++
Sbjct:   188 FNVKLEKFDVKNKINTIKEIRKITNVGLKEAKDMVESAPFYIQKSVPSEKAEEMKKSFEQ 247

Query:   178 VGAQVSME 185
             +GA + +E
Sbjct:   248 LGATIILE 255

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0020011 "apicoplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036873001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (189 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028715001	RecName- Full=Ribosomal protein L1; (347 aa)	•			•	•		•		0.894
	GSVIVG00000483001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (145 aa)	•			•	•		•		0.880
	GSVIVG00026943001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)	•			•	•		•		0.851
	GSVIVG00026031001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)	•			•	•		•		0.844
	rps3	SubName- Full=Chromosome undetermined scaffold_3592, whole genome shotgun sequence; (207 aa)	•			•			•		0.840
	GSVIVG00029480001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (226 aa)	•				•		•		0.820
	rpoC2	RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6;; DNA-dependent RNA polymerase catalyzes [...] (692 aa)	•						•		0.817
	GSVIVG00035271001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)	•			•	•		•		0.817
	GSVIVG00015322001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)	•			•			•		0.815
	GSVIVG00023012001	SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (213 aa)	•			•	•		•		0.780

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
cd00387	127	cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L1	1e-39
PRK00157	123	PRK00157, rplL, 50S ribosomal protein L7/L12; Revi	6e-28
CHL00083	131	CHL00083, rpl12, ribosomal protein L12	1e-24
COG0222	124	COG0222, RplL, Ribosomal protein L7/L12 [Translati	3e-24
TIGR00855	123	TIGR00855, L12, ribosomal protein L7/L12	9e-23
pfam00542	68	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12	1e-22

>gnl|CDD|100102 cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L12

 Score =  131 bits (331), Expect = 1e-39
 Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 10/137 (7%)

Query: 48  EKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTG 107
            KV  IV+ +  L+L+E  +L   +  K G+                             
Sbjct: 1   LKVEEIVEALKELTLLEAAELVKALEEKFGVSASAAAAAAAAAAP----------AAAAA 50

Query: 108 KAEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDE 167
            A E  EKT FD+ L  +GA  K+ VIKEVR  TGLGLKE+K+LVE  P +LK GV+K+E
Sbjct: 51  AAAEAEEKTEFDVVLESFGAAKKIAVIKEVREITGLGLKEAKDLVESAPKVLKEGVSKEE 110

Query: 168 ADKIVAKLKEVGAQVSM 184
           A++I  KL+E GA+V +
Sbjct: 111 AEEIKKKLEEAGAKVEL 127

Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and contain binding sites for other molecules. Initiation factors, elongation factors, and release factors are known to interact with the L7/L12 stalk during their GTP-dependent cycles. The binding site for the factors EF-Tu and EF-G comprises L7/L12, L10, L11, the L11-binding region of 23S rRNA, and the sarcin-ricin loop of 23S rRNA. Removal of L7/L12 has minimal effect on factor binding and it has been proposed that L7/L12 induces the catalytically active conformation of EF-Tu and EF-G, thereby stimulating the GTPase activity of both factors. In eukaryotes, the proteins that perform the equivalent function to L7/L12 are called P1 and P2, which do not share sequence similarity with L7/L12. However, a bacterial L7/L12 homolog is found in some eukaryotes, in mitochondria and chloroplasts. In archaea, the protein equivalent to L7/L12 is called aL12 or L12p, but it is closer in sequence to P1 and P2 than to L7/L12. Length = 127

>gnl|CDD|234671 PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed

 Score =  101 bits (253), Expect = 6e-28
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 17/133 (12%)

Query: 51  ASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAE 110
             I++ +  ++++E+ +L   +  K G+                   A          A 
Sbjct: 6   EQIIEALKEMTVLELSELVKALEEKFGVS----------------AAAPVAAAAAAAAAA 49

Query: 111 EKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADK 170
              EKT FD+ L   G   K+ VIK VR  TGLGLKE+K+LVE  P ++K GV+K+EA++
Sbjct: 50  AAEEKTEFDVVLKSAGD-KKIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEE 108

Query: 171 IVAKLKEVGAQVS 183
           I  KL+E GA+V 
Sbjct: 109 IKKKLEEAGAKVE 121

Length = 123

>gnl|CDD|214358 CHL00083, rpl12, ribosomal protein L12

 Score = 92.7 bits (231), Expect = 1e-24
 Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 9/137 (6%)

Query: 47  SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGT 106
           S K+  I++E+  L+L+E  +L   +    G+    +    + G   S   A A      
Sbjct: 2   STKINEIIEELKSLTLLEAAELVKQIEETFGV----DASAPVGGGMMSAPAAAA-----A 52

Query: 107 GKAEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKD 166
             AEE  EKT FD+ L    A+ ++ V+K VR  TGLGLKE+KELVE +P  +K G++K+
Sbjct: 53  QAAEEVEEKTEFDVILEEVPADKRIAVLKVVRSLTGLGLKEAKELVESLPKTIKEGISKE 112

Query: 167 EADKIVAKLKEVGAQVS 183
           EA++   +L+E GA+V 
Sbjct: 113 EAEEAKKQLEEAGAKVI 129

Length = 131

>gnl|CDD|223300 COG0222, RplL, Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]

 Score = 91.6 bits (228), Expect = 3e-24
 Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 16/133 (12%)

Query: 53  IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEK 112
           I++ +  L+++E+ +L   +  K G+     +             A A G      AEEK
Sbjct: 8   IIEALKELTVLELSELVKALEEKFGVTAAAPV------------AAAAAGAAAAEAAEEK 55

Query: 113 VEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIV 172
              T FD+ L   G + K+ VIK VR  TGLGLKE+K+LVE  P +LK GV+K+EA++I 
Sbjct: 56  ---TEFDVVLKSAGGK-KIAVIKVVRELTGLGLKEAKDLVEGAPKVLKEGVSKEEAEEIK 111

Query: 173 AKLKEVGAQVSME 185
            KL+E GA+V ++
Sbjct: 112 KKLEEAGAKVELK 124

Length = 124

>gnl|CDD|233152 TIGR00855, L12, ribosomal protein L7/L12

 Score = 87.9 bits (218), Expect = 9e-23
 Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 15/130 (11%)

Query: 53  IVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEK 112
           I++ +  ++++E+ +L   +  K G+                V    A        AEEK
Sbjct: 6   IIEALKEMTVLELSELVKALEEKFGVSAAA-----------PVAAGAAGAAAAAAAAEEK 54

Query: 113 VEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIV 172
            E   FD+ L G G + K+ VIK VR  TGLGLKE+K+LVE  P +LK GV+K+EA+++ 
Sbjct: 55  TE---FDVILKGAG-DNKIAVIKVVREITGLGLKEAKDLVEGAPKVLKEGVSKEEAEELK 110

Query: 173 AKLKEVGAQV 182
            KL+E GA+V
Sbjct: 111 KKLEEAGAKV 120

Ribosomal proteins L7 and L12 are synonymous except for post-translational modification of the N-terminal amino acid. THis model resembles pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 123

>gnl|CDD|201294 pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain

 Score = 85.6 bits (213), Expect = 1e-22
 Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
           FD+ L   G   K+ VIK VR  TGLGLKE+K+LVE  P  +K GV+K+EA++I  KL+E
Sbjct: 2   FDVVLTSAGD-KKIAVIKVVREITGLGLKEAKDLVEGAPKTIKEGVSKEEAEEIKKKLEE 60

Query: 178 VGAQVSME 185
            GA+V ++
Sbjct: 61  AGAKVELK 68

Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG1715	187	consensus Mitochondrial/chloroplast ribosomal prot	100.0
CHL00083	131	rpl12 ribosomal protein L12	100.0
cd00387	127	Ribosomal_L7_L12 Ribosomal protein L7/L12. Ribosom	100.0
TIGR00855	126	L12 ribosomal protein L7/L12. THis model resembles	100.0
PRK00157	123	rplL 50S ribosomal protein L7/L12; Reviewed	100.0
COG0222	124	RplL Ribosomal protein L7/L12 [Translation, riboso	100.0
PF00542	68	Ribosomal_L12: Ribosomal protein L7/L12 C-terminal	99.91
PRK06771	93	hypothetical protein; Provisional	97.93
PF02617	82	ClpS: ATP-dependent Clp protease adaptor protein C	88.57

>KOG1715 consensus Mitochondrial/chloroplast ribosomal protein L12 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.9e-44  Score=297.87  Aligned_cols=139  Identities=48%  Similarity=0.703  Sum_probs=118.0

Q ss_pred             cCCCCCCCChhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCcccccccccee
Q 037146           39 YCTPSQEPSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVF  118 (185)
Q Consensus        39 ~~~~~~~~s~KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f  118 (185)
                      +....+++++||.+|+|+|++|||+|++||++.|+++|||+..+.++++    +..+ ++   +++.++.++++.|||.|
T Consensus        49 ~~~~~~~~~~KI~~iv~eIssLtLlE~s~L~~~Lk~kl~i~e~~~~~a~----~~g~-~~---~~~~~a~ee~k~ekt~F  120 (187)
T KOG1715|consen   49 PPIAAVPPPPKISKIVDEISSLTLLETSDLVDLLKKKLNIPELPLAPAA----AAGA-AA---PDAGGAEEEAKKEKTTF  120 (187)
T ss_pred             CcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCcccchhhc----cccC-CC---CCcccccccchhhcceE
Confidence            3333468999999999999999999999999999999999998754321    1111 11   11122334556788889


Q ss_pred             EEEEecCCcchhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEeC
Q 037146          119 DLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME  185 (185)
Q Consensus       119 ~V~L~~~~a~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~VelE  185 (185)
                      ||+|++||+.+||+|||+||.+|||||+|||+|||++|+++|+|++|||||+||++|+++||+|+||
T Consensus       121 dVkL~~fda~~KIkVIKEVR~~tgL~LkeAKklVE~aP~ilKegvtKeEAEkik~kLea~GakV~le  187 (187)
T KOG1715|consen  121 DVKLEKFDASSKIKVIKEVRALTGLGLKEAKKLVEKAPKILKEGVTKEEAEEIKEKLEAAGAKVVLE  187 (187)
T ss_pred             EEEEeecCccchhHHHHHHHHhccccHHHHHHHHHhccHHHHcCCCHHHHHHHHHHHHHcCCeEeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

>CHL00083 rpl12 ribosomal protein L12

Probab=100.00  E-value=5.4e-42  Score=272.38  Aligned_cols=131  Identities=36%  Similarity=0.557  Sum_probs=110.7

Q ss_pred             CChhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecC
Q 037146           46 PSEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGY  125 (185)
Q Consensus        46 ~s~KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~  125 (185)
                      .|+++++|+|+|++|||+|++||++.|+++|||++.++.+.    +++  +++ ++  ++++++++.+|||+|||+|++|
T Consensus         1 ~s~k~~~ivd~i~~LTllE~~eLv~~le~~fgv~~~~~~a~----~~~--~~~-a~--~~~~~~~~~~EKT~F~V~L~~~   71 (131)
T CHL00083          1 MSTKINEIIEELKSLTLLEAAELVKQIEETFGVDASAPVGG----GMM--SAP-AA--AAAQAAEEVEEKTEFDVILEEV   71 (131)
T ss_pred             CCchHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccchhhh----hhc--ccc-Cc--ccccccchhhhcceeeEEEeec
Confidence            37899999999999999999999999999999998753211    110  000 11  1112234568999999999999


Q ss_pred             CcchhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEeC
Q 037146          126 GAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME  185 (185)
Q Consensus       126 ~a~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~VelE  185 (185)
                      |+++||+|||+||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|+|.
T Consensus        72 ~~~~Ki~vIK~vr~it~lgLkeaK~lVe~~P~~ike~v~KeeAe~ik~~le~~Ga~v~lk  131 (131)
T CHL00083         72 PADKRIAVLKVVRSLTGLGLKEAKELVESLPKTIKEGISKEEAEEAKKQLEEAGAKVIIK  131 (131)
T ss_pred             CCcchHHHHHHHHHHcCCCHHHHHHHHHhCCHHHHhCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            889999999999999999999999999999999999999999999999999999999984

>cd00387 Ribosomal_L7_L12 Ribosomal protein L7/L12

Probab=100.00  E-value=6.4e-42  Score=270.50  Aligned_cols=127  Identities=43%  Similarity=0.661  Sum_probs=107.0

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCc
Q 037146           48 EKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGA  127 (185)
Q Consensus        48 ~KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a  127 (185)
                      .++++|+|+|++|||+|++||++.|+++|||++.++.+.    +   ++++++   ++++++++++|||+|||+|++||+
T Consensus         1 ~~~~~i~d~i~~LtllE~~eLv~~le~~~gv~~~~~~~~----~---~~~a~~---~~~~~~~~~~EKt~F~V~L~~~~~   70 (127)
T cd00387           1 LKVEEIVEALKELTLLEAAELVKALEEKFGVSASAAAAA----A---AAAAPA---AAAAAAAEAEEKTEFDVVLESFGA   70 (127)
T ss_pred             CcHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCccccccc----c---cccCcc---cccccccchhhcceEEEEEeeCCc
Confidence            368999999999999999999999999999998632110    0   111111   111122235799999999999998


Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          128 EAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       128 ~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      ++||+|||+||++|||||+|||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus        71 ~~Ki~vIK~VR~it~LgLkEAK~lVe~~P~~iKe~vsKeeAE~ik~kLe~aGA~Vel  127 (127)
T cd00387          71 AKKIAVIKEVREITGLGLKEAKDLVESAPKVLKEGVSKEEAEEIKKKLEEAGAKVEL  127 (127)
T ss_pred             hhhHHHHHHHHHHhCCChHHHHHHHHhCcHHHHhCCCHHHHHHHHHHHHHcCCEEeC
Confidence            899999999999999999999999999999999999999999999999999999986

Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and

>TIGR00855 L12 ribosomal protein L7/L12

Probab=100.00  E-value=8.9e-40  Score=258.25  Aligned_cols=123  Identities=38%  Similarity=0.632  Sum_probs=105.3

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCc
Q 037146           48 EKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGA  127 (185)
Q Consensus        48 ~KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a  127 (185)
                      -+.++|+|+|++|||+|++||++.|+++|||++.++++     ++    ++ +++ +   +++..+|||+|||+|+.++ 
T Consensus         4 ~~~~~ive~i~~LTllE~~eLv~~lee~fgV~a~a~~a-----~~----~a-~~~-~---~~~~~eEKt~f~V~L~~~~-   68 (126)
T TIGR00855         4 LSKEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVA-----AG----AA-GAA-A---AAAAAEEKTEFDVILKGAG-   68 (126)
T ss_pred             ccHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCccchhh-----hc----cc-ccc-c---ccccccccceeeEEEecCC-
Confidence            34689999999999999999999999999999875321     11    11 011 1   1233579999999999887 


Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEeC
Q 037146          128 EAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME  185 (185)
Q Consensus       128 ~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~VelE  185 (185)
                      ++||+|||+||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|+|.
T Consensus        69 ~~Ki~vIK~vR~itgLgLkEAK~lVe~~P~~ike~vsKeeAe~ik~~Le~aGa~veik  126 (126)
T TIGR00855        69 DNKIAVIKVVREITGLGLKEAKDLVEGAPKVLKEGVSKEEAEELKKKLEEAGAKVEVK  126 (126)
T ss_pred             cchhHHHHHHHHHcCCcHHHHHHHHHhCcHHHHhCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            6899999999999999999999999999999999999999999999999999999983

THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.

>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed

Probab=100.00  E-value=3.2e-39  Score=254.23  Aligned_cols=122  Identities=36%  Similarity=0.593  Sum_probs=106.0

Q ss_pred             ChhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCC
Q 037146           47 SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYG  126 (185)
Q Consensus        47 s~KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~  126 (185)
                      +-++++|+|+|++|||+|++||++.|+++|||++.++++.    +     ++  ++     +++..+|||+|||+|++| 
T Consensus         2 ~~~~~~i~e~i~~LtllE~~eLv~~lee~fgv~a~~~~~~----~-----~~--~~-----~~~~~eEkt~f~V~L~~~-   64 (123)
T PRK00157          2 ALTKEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVAA----A-----AA--AA-----AAAAAEEKTEFDVVLKSA-   64 (123)
T ss_pred             CccHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccchhcc----c-----cc--cc-----cccccccccceeEEEecc-
Confidence            4568999999999999999999999999999998753210    0     01  11     122357999999999999 


Q ss_pred             cchhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEeC
Q 037146          127 AEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME  185 (185)
Q Consensus       127 a~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~VelE  185 (185)
                      +++||+|||+||++|||||+|||+|||++|++||+|++|+|||++|++|+++||+|+|.
T Consensus        65 ~~kKi~vIK~vR~itgLgLkEAK~lVe~~P~~ike~v~keeAe~ik~~Le~aGa~velk  123 (123)
T PRK00157         65 GDKKIAVIKAVREITGLGLKEAKDLVEGAPKVVKEGVSKEEAEEIKKKLEEAGAKVELK  123 (123)
T ss_pred             chhhHHHHHHHHHHhCCCHHHHHHHHHhCCHHHHhCCCHHHHHHHHHHHHHcCCEEeeC
Confidence            47999999999999999999999999999999999999999999999999999999984

>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.7e-39  Score=253.24  Aligned_cols=122  Identities=39%  Similarity=0.614  Sum_probs=105.8

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCc
Q 037146           48 EKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGA  127 (185)
Q Consensus        48 ~KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a  127 (185)
                      -..++|+++|++||++|+++|++.++++|||+++++++.    +     ++  ++    ++.+..+|||+|||+|.+++ 
T Consensus         3 ~~~e~iie~i~~~svlel~eLvk~~eekfgVsaaa~va~----a-----~~--~a----~a~~aaeEktefdVvL~~~g-   66 (124)
T COG0222           3 LTKEQIIEALKELTVLELSELVKALEEKFGVTAAAPVAA----A-----AA--GA----AAAEAAEEKTEFDVVLKSAG-   66 (124)
T ss_pred             CcHHHHHHHHHHhhHHHHHHHHHHHHHHhCCccchhhhh----c-----cc--cc----cccccccccceeEEEecccC-
Confidence            357899999999999999999999999999998754321    0     01  10    11122578999999999995 


Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEeC
Q 037146          128 EAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME  185 (185)
Q Consensus       128 ~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~VelE  185 (185)
                      ++||+|||+||++|||||||||++||++|++||+|++|+|||+||++|+++||+|++.
T Consensus        67 ~kKI~VIK~vR~itGLGLKEAKdlVe~aP~~~KE~v~k~eAe~~kkkleeaGa~V~~k  124 (124)
T COG0222          67 GKKIAVIKVVRELTGLGLKEAKDLVEGAPKVLKEGVSKEEAEEIKKKLEEAGAKVELK  124 (124)
T ss_pred             CcchhHHHHHHHHhcccHHHHHHHHHhCcHHHHccCCHHHHHHHHHHHHHcCCeEeeC
Confidence            7999999999999999999999999999999999999999999999999999999984

>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.91  E-value=4.5e-25  Score=157.74  Aligned_cols=68  Identities=51%  Similarity=0.853  Sum_probs=60.2

Q ss_pred             eeEEEEecCCcchhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEeC
Q 037146          117 VFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME  185 (185)
Q Consensus       117 ~f~V~L~~~~a~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~VelE  185 (185)
                      +|||+|+++ +++||++||.||++|||||+|||++||++|.+|++|++++|||+++++|+++||+|+|+
T Consensus         1 ef~V~L~~~-~~~ki~vIK~vR~~tgl~L~eAK~~vd~~p~~ik~~v~keeAe~ik~~Le~aGa~v~l~   68 (68)
T PF00542_consen    1 EFDVVLKSF-GEKKIKVIKEVREITGLGLKEAKKLVDSLPKVIKEGVSKEEAEEIKKKLEAAGAKVELK   68 (68)
T ss_dssp             SEEEEEEE--TTGHHHHHHHHHHHC---HHHHHHHHCTTTEEEEEEE-HHHHHHHHHHHHCCT-EEEEE
T ss_pred             CeEEEEeec-ccchHHHHHHHHHHhCCcHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            599999999 68999999999999999999999999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the C-terminal domain of the large subunit ribosomal proteins, known as the L7/L12 family. L7/L12 is present in each 50S subunit in four copies organised as two dimers. The L8 protein complex consisting of two dimers of L7/L12 and L10 in Escherichia coli ribosomes is assembled on the conserved region of 23 S rRNA termed the GTPase-associated domain []. The L7/L12 dimer probably interacts with EF-Tu. L7 and L12 only differ in a single post translational modification of the addition of an acetyl group to the N terminus of L7.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1DD4_B 1DD3_A 1RQU_B 2GYA_5 2GYC_5 1RQS_A 1RQV_A 1CTF_A 2XUX_L.

>PRK06771 hypothetical protein; Provisional

Probab=97.93  E-value=7.2e-06  Score=62.49  Aligned_cols=28  Identities=32%  Similarity=0.503  Sum_probs=26.6

Q ss_pred             chhHHHHHHHHhhcCCChhHHHHHHhhc
Q 037146          128 EAKLKVIKEVRGFTGLGLKESKELVEKV  155 (185)
Q Consensus       128 ~kKi~vIK~VR~it~LgLkEAK~lVe~~  155 (185)
                      .+||+.||.+|+.||+||+|||++||++
T Consensus        66 Gkki~AIK~~Re~tG~~L~eAK~yVD~L   93 (93)
T PRK06771         66 GQTVTAVKRVREAFGFSLLEAKQYVDKL   93 (93)
T ss_pred             CCchHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            5999999999999999999999999974

>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP

Probab=88.57  E-value=1.4  Score=31.77  Aligned_cols=69  Identities=16%  Similarity=0.294  Sum_probs=49.9

Q ss_pred             cceeEEEEecCCcchhHHHHHHHHhhcCCChhHHHHHHhhcc----hhhhcCCCHHHHHHHHHHHHHcC------CEEEe
Q 037146          115 KTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVP----TLLKRGVTKDEADKIVAKLKEVG------AQVSM  184 (185)
Q Consensus       115 Kt~f~V~L~~~~a~kKi~vIK~VR~it~LgLkEAK~lVe~~P----~~IKe~vsKeeAe~ik~kle~aG------A~Vel  184 (185)
                      ...|.|+|=+-+-..--.||..++.+.|+...+|..+...+=    .+|.. -++++||....+|...|      -+++|
T Consensus         4 ~~~~~vvL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~a~~v~~~G~avv~~-~~~e~ae~~~~~l~~~g~~~~~PL~~ti   82 (82)
T PF02617_consen    4 PDMYRVVLWNDEVHTFEQVIDVLRRVFGCSEEQARQIAMEVHREGRAVVGT-GSREEAEEYAEKLQRAGRDSGHPLRATI   82 (82)
T ss_dssp             --EEEEEEE--SSSBHHHHHHHHHHHC---HHHHHHHHHHHHHHSEEEEEE-EEHHHHHHHHHHHHHHHHHTT---EEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhHcCCEeeee-CCHHHHHHHHHHHHHHhhccCCCeEEeC
Confidence            456899997655556779999999999999999999877542    45655 58999999999999999      66654

ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
2xtg_L	121	Trna Tranlocation On The 70s Ribosome: The Pre- Tra		1e-11
1rqu_A	120	Nmr Structure Of L7 Dimer From E.Coli Length = 120		1e-11
2gya_3	119	Structure Of The 50s Subunit Of A Pre-Translocation		1e-11
1rqs_A	74	Nmr Structure Of C-Terminal Domain Of Ribosomal Pro		2e-11
2bcw_B	68	Coordinates Of The N-Terminal Domain Of Ribosomal P		2e-11
2zjq_5	122	Interaction Of L7 With L11 Induced By Microccocin B		1e-10
2j01_M	125	Structure Of The Thermus Thermophilus 70s Ribosome		3e-08
2ftc_E	137	Structural Model For The Large Subunit Of The Mamma		6e-08
1dd3_A	128	Crystal Structure Of Ribosomal Protein L12 From The		2e-04

>pdb|2XTG|L Chain L, Trna Tranlocation On The 70s Ribosome: The Pre- Translocational Translocation Intermediate Ti(Pre) Length = 121

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
           FD+ L   GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E
Sbjct: 55  FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEE 113
Query: 178 VGAQVSM 184
            GA+V +
Sbjct: 114 AGAEVEV 120

>pdb|1RQU|A Chain A, Nmr Structure Of L7 Dimer From E.Coli Length = 120

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
           FD+ L   GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E
Sbjct: 54  FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEE 112
Query: 178 VGAQVSM 184
            GA+V +
Sbjct: 113 AGAEVEV 119

>pdb|2GYA|3 Chain 3, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 119

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
           FD+ L   GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E
Sbjct: 53  FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEE 111
Query: 178 VGAQVSM 184
            GA+V +
Sbjct: 112 AGAEVEV 118

>pdb|1RQS|A Chain A, Nmr Structure Of C-Terminal Domain Of Ribosomal Protein L7 From E.Coli Length = 74

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
           FD+ L   GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E
Sbjct: 8   FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEE 66
Query: 178 VGAQVSM 184
            GA+V +
Sbjct: 67  AGAEVEV 73

>pdb|2BCW|B Chain B, Coordinates Of The N-Terminal Domain Of Ribosomal Protein L11,C-Terminal Domain Of Ribosomal Protein L7L12 AND A Portion Of The G' Domain Of Elongation Factor G, As Fitted Into Cryo-Em Map Of An Escherichia Coli 70sEf- GGdpFusidic Acid Complex Length = 68

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
           FD+ L   GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E
Sbjct: 2   FDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEE 60
Query: 178 VGAQVSM 184
            GA+V +
Sbjct: 61  AGAEVEV 67

>pdb|2ZJQ|5 Chain 5, Interaction Of L7 With L11 Induced By Microccocin Binding To The Deinococcus Radiodurans 50s Subunit Length = 122

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
           FD+ L   GA +K+ VIKE+RG TGLGLKE+K++ EK   +LK GV KDEA+K+ A+L+ 
Sbjct: 57  FDVVLIDAGA-SKINVIKEIRGITGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQLEA 114
Query: 178 VGAQVSM 184
            GA+V +
Sbjct: 115 AGARVEL 121

>pdb|2FTC|E Chain E, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 137

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 49  KVASIVDEISCLSLVEVMDLADVVRNKLGIKE---MPNMCVMMPGMGFSXXXXXXXXXXX 105
           K+  +V +I+ L+L+E+ DL ++++  L I++   MP M  M+PG   +           
Sbjct: 2   KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMP-MGGMVPGAAPAPTAPEAAEEDV 60
Query: 106 XXXXXXXXXXXXFDLKLAGYGAEAKLKVIKEVRGFT-GLGLKESKELVEKVPTLLKRGVT 164
                       F ++L       K+K+IKE++ +  G+ L ++K+LVE +P  +K  V 
Sbjct: 61  PKQKERTH----FTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVA 116
Query: 165 KDEADKIVAKLKEVGAQVSME 185
           K EA+KI A L+ VG  V +E
Sbjct: 117 KAEAEKIKAALEAVGGTVVLE 137

>pdb|1DD3|A Chain A, Crystal Structure Of Ribosomal Protein L12 From Thermotoga Maritima Length = 128

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 52/70 (74%), Gaps = 4/70 (5%)
Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPT---LLKRGVTKDEADKIVAK 174
           FD+ L  +G + K++VIK VR  TGLGLKE+K+LVEK  +   ++K GV+K+EA++I  K
Sbjct: 59  FDVVLKSFG-QNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKK 117
Query: 175 LKEVGAQVSM 184
           L+E GA+V +
Sbjct: 118 LEEAGAEVEL 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
2ftc_E	137	L12MT, MRP-L12, 39S ribosomal protein L12, mitocho	3e-37
3sgf_J	121	50S ribosomal protein L7/L12; typeii release facto	1e-25
2j01_L	125	50S ribosomal protein L7; ribosome, tRNA, paromomy	1e-25
1dd3_A	128	50S ribosomal protein L7/L12; dimer formation, fle	2e-25
2zjq_5	122	50S ribosomal protein L7/L12; ribosome, ribosomal	5e-24
1ctf_A	74	Ribosomal protein L7/L12; 1.70A {Escherichia coli}	1e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 137

 Score =  124 bits (314), Expect = 3e-37
 Identities = 41/138 (29%), Positives = 76/138 (55%), Gaps = 3/138 (2%)

Query: 49  KVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGK 108
           K+  +V +I+ L+L+E+ DL ++++  L I+++  M +     G +              
Sbjct: 2   KIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVP 61

Query: 109 AEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGF-TGLGLKESKELVEKVPTLLKRGVTKDE 167
            ++  E+T F ++L       K+K+IKE++ +  G+ L ++K+LVE +P  +K  V K E
Sbjct: 62  KQK--ERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAE 119

Query: 168 ADKIVAKLKEVGAQVSME 185
           A+KI A L+ VG  V +E
Sbjct: 120 AEKIKAALEAVGGTVVLE 137

>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A Length = 121

 Score = 94.8 bits (236), Expect = 1e-25
 Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 19/138 (13%)

Query: 47  SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGT 106
           S     I++ ++ +S+++V++L   +  K G+                   A A      
Sbjct: 2   SITKDQIIEAVAAMSVMDVVELISAMEEKFGVS------------------AAAAVAVAA 43

Query: 107 GKAEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKD 166
           G  E   EKT FD+ L   GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD
Sbjct: 44  GPVEAAEEKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD 102

Query: 167 EADKIVAKLKEVGAQVSM 184
           +A+ +   L+E GA+V +
Sbjct: 103 DAEALKKALEEAGAEVEV 120

>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I Length = 128

 Score = 94.1 bits (234), Expect = 2e-25
 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 16/138 (11%)

Query: 50  VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKA 109
           +  I++ I  L++ E+ +L   + +K G+     + V                  G    
Sbjct: 3   IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAP------------VAGAAAG 50

Query: 110 EEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTL---LKRGVTKD 166
             + EKT FD+ L  +G   K++VIK VR  TGLGLKE+K+LVEK  +    +K GV+K+
Sbjct: 51  AAQEEKTEFDVVLKSFGQN-KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKE 109

Query: 167 EADKIVAKLKEVGAQVSM 184
           EA++I  KL+E GA+V +
Sbjct: 110 EAEEIKKKLEEAGAEVEL 127

>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1 Length = 122

 Score = 90.5 bits (225), Expect = 5e-24
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 18/139 (12%)

Query: 47  SEKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGT 106
           +    +++D++  L+++E+ DL D ++   G+                       GG   
Sbjct: 2   AYDKQALIDQLGQLTIMELADLIDGLKETWGV----------------TAAVAVSGGGAG 45

Query: 107 GKAEEKVEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKD 166
             +    EKT FD+ L   GA  K+ VIKE+RG TGLGLKE+K++ EK    LK GV KD
Sbjct: 46  AASPAAEEKTEFDVVLIDAGAS-KINVIKEIRGITGLGLKEAKDMSEKGGV-LKEGVAKD 103

Query: 167 EADKIVAKLKEVGAQVSME 185
           EA+K+ A+L+  GA+V ++
Sbjct: 104 EAEKMKAQLEAAGARVELK 122

>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B Length = 74

 Score = 82.4 bits (204), Expect = 1e-21
 Identities = 39/72 (54%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 114 EKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVA 173
           EKT FD+ L   GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +  
Sbjct: 4   EKTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKK 62

Query: 174 KLKEVGAQVSME 185
            L+E GA+V ++
Sbjct: 63  ALEEAGAEVEVK 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 94/232 (40%)

Query: 1   MRHLRFITLH-------------VSRNFKSSLQNPR-----SATNSH-----------LL 31
           +R  + + +              V  ++K   +        +  N +           LL
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 32  NRISARDYCT---PSQEPSEKVASIVDEIS----------CLSLVEVMDLADVVRNKLGI 78
            +I   ++ +    S     ++ SI  E+           CL LV    L +V +N    
Sbjct: 207 YQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LV----LLNV-QNAKAW 259

Query: 79  KEMPNMC-VMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAEAKLKVIKEV 137
                 C +++          T R             K V D  L+       + +    
Sbjct: 260 NAFNLSCKILL----------TTR------------FKQVTD-FLSA-ATTTHISLDHHS 295

Query: 138 RGFTGLGLKESKELVEKV----PTLLKRGVTKDEADK--------IVAKLKE 177
              T     E K L+ K     P  L R     E           I   +++
Sbjct: 296 MTLT---PDEVKSLLLKYLDCRPQDLPR-----EVLTTNPRRLSIIAESIRD 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
2ftc_E	137	L12MT, MRP-L12, 39S ribosomal protein L12, mitocho	100.0
2j01_L	125	50S ribosomal protein L7; ribosome, tRNA, paromomy	100.0
2zjq_5	122	50S ribosomal protein L7/L12; ribosome, ribosomal	100.0
1dd3_A	128	50S ribosomal protein L7/L12; dimer formation, fle	100.0
3sgf_J	121	50S ribosomal protein L7/L12; typeii release facto	100.0
1ctf_A	74	Ribosomal protein L7/L12; 1.70A {Escherichia coli}	99.96
1dd4_C	40	50S ribosomal protein L7/L12; dimer formation, fle	99.05
1zav_U	30	50S ribosomal protein L7/L12; ribosome structure a	98.6
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	86.63

>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=8.4e-45  Score=289.15  Aligned_cols=134  Identities=32%  Similarity=0.526  Sum_probs=109.5

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCC-C-CCCccccccccceeEEEEecC
Q 037146           48 EKVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGG-T-GTGKAEEKVEKTVFDLKLAGY  125 (185)
Q Consensus        48 ~KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~-a-~~~~~e~~~EKt~f~V~L~~~  125 (185)
                      +||++|+|+|++|||+|++||++.|+++|||++.++++.    +++.+++++++++ + +++++++.+|||+|||+|++|
T Consensus         1 ~kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~----~~~~~~~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~   76 (137)
T 2ftc_E            1 PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPM----GGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEA   76 (137)
T ss_pred             CcHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCccccccc----ccccccCCCCccccccccccccccccCCeeEEEeecc
Confidence            589999999999999999999999999999998753211    1110111001111 1 111123357999999999999


Q ss_pred             CcchhHHHHHHHHhh-cCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEeC
Q 037146          126 GAEAKLKVIKEVRGF-TGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSME  185 (185)
Q Consensus       126 ~a~kKi~vIK~VR~i-t~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~VelE  185 (185)
                      |+++||+|||+||++ |||||||||+|||++|++||+|+||+|||+||++|+++||+|+||
T Consensus        77 ~a~~KI~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~Vele  137 (137)
T 2ftc_E           77 KPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE  137 (137)
T ss_pred             CccchhHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            989999999999997 999999999999999999999999999999999999999999997

>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1

Probab=100.00  E-value=3.2e-40  Score=258.39  Aligned_cols=118  Identities=41%  Similarity=0.669  Sum_probs=102.8

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCcc
Q 037146           49 KVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAE  128 (185)
Q Consensus        49 KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a~  128 (185)
                      ++++|+|+|++|||+|++||++.|+++|||+++++++      +   +++ +++ +     +..+|||+|||+|++|+ +
T Consensus         4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaap~a------~---a~~-~a~-a-----~a~eEKteFdV~L~~~~-~   66 (122)
T 2zjq_5            4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVS------G---GGA-GAA-S-----PAAEEKTEFDVVLIDAG-A   66 (122)
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCccccc------c---cCC-Ccc-c-----ccccccceeEEEEecCC-c
Confidence            4789999999999999999999999999999864221      0   011 111 1     12468999999999997 7


Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +||+|||+||++|||||||||+|||++ ++||+|++|+|||+||++|+++||+|+|
T Consensus        67 ~KI~VIK~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel  121 (122)
T 2zjq_5           67 SKINVIKEIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARVEL  121 (122)
T ss_pred             chHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence            999999999999999999999999999 9999999999999999999999999997

>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I

Probab=100.00  E-value=1.9e-41  Score=267.13  Aligned_cols=122  Identities=39%  Similarity=0.641  Sum_probs=103.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCcch
Q 037146           50 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAEA  129 (185)
Q Consensus        50 V~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a~k  129 (185)
                      +++|+|+|++|||+|++||++.|+++|||+++++++.+   +     ++++++ +   +.+..+|||+|||+|++|+ ++
T Consensus         3 ~~~ive~i~~ltllE~~eLv~~lee~fgv~aaapva~~---~-----~~~~~~-a---~~~a~eEKteFdV~L~~~~-~~   69 (128)
T 1dd3_A            3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVA---A-----APVAGA-A---AGAAQEEKTEFDVVLKSFG-QN   69 (128)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHH---H-----HHHHHH-H---HHHHHHTTSSEEEEEEECT-TC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcchhhcc---c-----cccccc-c---ccccccccceeeEEEecCC-cc
Confidence            68999999999999999999999999999976422110   0     010010 0   1123478999999999997 79


Q ss_pred             hHHHHHHHHhhcCCChhHHHHHHhhcch---hhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          130 KLKVIKEVRGFTGLGLKESKELVEKVPT---LLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       130 Ki~vIK~VR~it~LgLkEAK~lVe~~P~---~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      ||+|||+||++|||||||||+|||++|+   +||+|++|+|||+||++|+++||+|+|
T Consensus        70 KI~VIK~VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel  127 (128)
T 1dd3_A           70 KIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL  127 (128)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            9999999999999999999999999999   999999999999999999999999997

>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A

Probab=100.00  E-value=1.8e-41  Score=265.06  Aligned_cols=117  Identities=41%  Similarity=0.667  Sum_probs=27.1

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcchhcccCCCCccccccccCCCCCCCccccccccceeEEEEecCCcc
Q 037146           49 KVASIVDEISCLSLVEVMDLADVVRNKLGIKEMPNMCVMMPGMGFSVKGATARGGTGTGKAEEKVEKTVFDLKLAGYGAE  128 (185)
Q Consensus        49 KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~~~~~~p~~~~~~~~~~aa~~a~~~~~e~~~EKt~f~V~L~~~~a~  128 (185)
                      .+++|+|+|++||++|++||++.|+++|||+++++++           ++ + + +    .+..+|||+|||+|++++ +
T Consensus         4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa~~a-----------~~-a-~-~----a~a~eEKteFdV~L~~~g-~   64 (121)
T 3sgf_J            4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVA-----------VA-A-G-P----VEAAEEKTEFDVILKAAG-A   64 (121)
T ss_dssp             CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred             cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccc-----------cc-c-c-c----cccccccceeEEEEecCc-h
Confidence            5789999999999999999999999999999764320           01 0 1 0    122468999999999997 6


Q ss_pred             hhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          129 AKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       129 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +||+|||+||++|||||||||+|||++|++||+|++|+|||+||++|+++||+|+|
T Consensus        65 ~Ki~VIK~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~Vel  120 (121)
T 3sgf_J           65 NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV  120 (121)
T ss_dssp             --------------------------------------------------------
T ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence            99999999999999999999999999999999999999999999999999999987

>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B

Probab=99.96  E-value=1.1e-30  Score=189.05  Aligned_cols=71  Identities=54%  Similarity=0.788  Sum_probs=66.1

Q ss_pred             cccceeEEEEecCCcchhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          113 VEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       113 ~EKt~f~V~L~~~~a~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +|||+|||+|++++ ++||+|||+||++|||||||||+|||++|++||+|++|+|||+||++|+++||+|+|
T Consensus         3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel   73 (74)
T 1ctf_A            3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV   73 (74)
T ss_dssp             ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred             cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            58999999999997 799999999999999999999999999999999999999999999999999999997

>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1

Probab=99.05  E-value=2.1e-10  Score=74.03  Aligned_cols=33  Identities=21%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCC
Q 037146           49 KVASIVDEISCLSLVEVMDLADVVRNKLGIKEM   81 (185)
Q Consensus        49 KV~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~   81 (185)
                      ++++|+|+|++||++|++||++.||++|||+++
T Consensus         2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaa   34 (40)
T 1dd4_C            2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAA   34 (40)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSC
T ss_pred             CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCcc
Confidence            478999999999999999999999999999975

>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C

Probab=98.60  E-value=3.1e-08  Score=60.26  Aligned_cols=28  Identities=25%  Similarity=0.560  Sum_probs=27.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 037146           50 VASIVDEISCLSLVEVMDLADVVRNKLG   77 (185)
Q Consensus        50 V~~Ivd~I~~LtLlE~~eLv~~leekfg   77 (185)
                      +++|+|+|++||++|++||++.||++||
T Consensus         3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG   30 (30)
T 1zav_U            3 IDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence            6899999999999999999999999998

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=86.63  E-value=0.46  Score=32.96  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHhhcch
Q 037146          131 LKVIKEVRGFTGLGLKESKELVEKVPT  157 (185)
Q Consensus       131 i~vIK~VR~it~LgLkEAK~lVe~~P~  157 (185)
                      ...||+||+.||.|.+|+|+.++.+-.
T Consensus        10 ~~~Vk~LRe~TGag~~dcKkAL~e~~G   36 (64)
T 2cp9_A           10 KELLMKLRRKTGYSFVNCKKALETCGG   36 (64)
T ss_dssp             CHHHHHHHHHHCCCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence            367999999999999999998766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1dd3a2	71	d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-ter	1e-19
d1ctfa_	68	d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal	7e-19

>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 71

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 76.2 bits (188), Expect = 1e-19
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 4/70 (5%)

Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTL---LKRGVTKDEADKIVAK 174
           FD+ L  +G   K++VIK VR  TGLGLKE+K+LVEK  +    +K GV+K+EA++I  K
Sbjct: 2   FDVVLKSFGQ-NKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKK 60

Query: 175 LKEVGAQVSM 184
           L+E GA+V +
Sbjct: 61  LEEAGAEVEL 70

>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 68

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 74.3 bits (183), Expect = 7e-19
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 118 FDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKE 177
           FD+ L   GA  K+ VIK VRG TGLGLKE+K+LVE  P  LK GV+KD+A+ +   L+E
Sbjct: 2   FDVILKAAGA-NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEE 60

Query: 178 VGAQVSM 184
            GA+V +
Sbjct: 61  AGAEVEV 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d2zjq51	71	Ribosomal protein L7/12, C-terminal domain {Deinoc	99.95
d1ctfa_	68	Ribosomal protein L7/12, C-terminal domain {Escher	99.95
d1dd3a2	71	Ribosomal protein L7/12, C-terminal domain {Thermo	99.94
d1dd3a1	57	Ribosomal protein L7/12, oligomerisation (N-termin	98.88
d2gyc31	47	Ribosomal protein L7/12, oligomerisation (N-termin	98.42
d1zavu1	30	Ribosomal protein L7/12, oligomerisation (N-termin	98.12
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	93.83
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	91.58
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	90.68

>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.95  E-value=2.7e-29  Score=178.81  Aligned_cols=70  Identities=54%  Similarity=0.822  Sum_probs=67.0

Q ss_pred             cccceeEEEEecCCcchhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          113 VEKTVFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       113 ~EKt~f~V~L~~~~a~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +|||+|||+|+++| ++||+|||+||++|||||+|||+|||+ |.+||+|++|+|||++|++|+++||+|+|
T Consensus         1 EEKt~F~V~L~~~~-~~Ki~vIK~VR~it~LgLkeAK~lVe~-p~~ike~vsKeeAE~~k~~Le~aGA~Vel   70 (71)
T d2zjq51           1 EEKTEFDVVLIDAG-ASKINVIKEIRGITGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQLEAAGARVEL   70 (71)
T ss_pred             CCCcEEEEEEeeCC-cchhhHHHHHHHhcCCCHHHHHhhccC-chHhhcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            48999999999998 579999999999999999999999998 77999999999999999999999999997

>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.5e-28  Score=173.63  Aligned_cols=67  Identities=54%  Similarity=0.810  Sum_probs=65.1

Q ss_pred             eeEEEEecCCcchhHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          117 VFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       117 ~f~V~L~~~~a~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +|||+|+++|+ +||+|||+||++|||||+|||+|||++|++||+|+||+|||++|++|+++||+|+|
T Consensus         1 EF~V~L~~~~~-~Ki~vIK~VR~it~lgLkEAK~lVe~~P~~ike~vskeeAE~ik~~Le~aGA~Vel   67 (68)
T d1ctfa_           1 EFDVILKAAGA-NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV   67 (68)
T ss_dssp             CEEEEEEECGG-GHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred             CeEEEEccCCc-chhHHHHHHHHhcCCCHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            59999999985 79999999999999999999999999999999999999999999999999999997

>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ClpS-like
superfamily: ClpS-like
family: Ribosomal protein L7/12, C-terminal domain
domain: Ribosomal protein L7/12, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1.4e-27  Score=169.83  Aligned_cols=67  Identities=52%  Similarity=0.842  Sum_probs=64.1

Q ss_pred             eeEEEEecCCcchhHHHHHHHHhhcCCChhHHHHHHhhcch---hhhcCCCHHHHHHHHHHHHHcCCEEEe
Q 037146          117 VFDLKLAGYGAEAKLKVIKEVRGFTGLGLKESKELVEKVPT---LLKRGVTKDEADKIVAKLKEVGAQVSM  184 (185)
Q Consensus       117 ~f~V~L~~~~a~kKi~vIK~VR~it~LgLkEAK~lVe~~P~---~IKe~vsKeeAe~ik~kle~aGA~Vel  184 (185)
                      +|||+|++|+ ++||+|||+||++|||||+|||+|||++|+   +||+|++|+|||++|++||++||+|+|
T Consensus         1 EF~V~L~~~~-~~KI~vIK~VR~it~lgLkEAK~lVe~~p~~~~vike~v~KeeAE~~K~~Le~aGA~V~l   70 (71)
T d1dd3a2           1 EFDVVLKSFG-QNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL   70 (71)
T ss_dssp             SEEEEEEECT-TCHHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEEcccC-ccchhHHHHHHHhcCCCHHHHHHHHHhcCCchHHHhcCCCHHHHHHHHHHHHHcCCEEEe
Confidence            5999999997 689999999999999999999999998885   899999999999999999999999997

>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=2.2e-11  Score=81.89  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=31.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCcc
Q 037146           50 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMPN   83 (185)
Q Consensus        50 V~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~~   83 (185)
                      +++|++.|.+||++|++||++.||++|||+++++
T Consensus         3 ~e~iie~I~~~tv~El~ELvKalEekfGVsAaaP   36 (57)
T d1dd3a1           3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAP   36 (57)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHhCcccchh
Confidence            6899999999999999999999999999998754

>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=9.1e-08  Score=61.76  Aligned_cols=33  Identities=18%  Similarity=0.534  Sum_probs=30.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCc
Q 037146           50 VASIVDEISCLSLVEVMDLADVVRNKLGIKEMP   82 (185)
Q Consensus        50 V~~Ivd~I~~LtLlE~~eLv~~leekfgv~~~~   82 (185)
                      -++|+|.|++||++|+.||++.+|+||||++++
T Consensus         3 ke~Ileaia~MSVmdvveLi~amEEKFGVsaaa   35 (47)
T d2gyc31           3 KDQIIEAVAAMSVMDVVELISAMEEKFGVSAAA   35 (47)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHTCTTTTH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhCcchhc
Confidence            378999999999999999999999999999875

>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.12  E-value=1.1e-06  Score=51.29  Aligned_cols=29  Identities=24%  Similarity=0.542  Sum_probs=27.7

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 037146           49 KVASIVDEISCLSLVEVMDLADVVRNKLG   77 (185)
Q Consensus        49 KV~~Ivd~I~~LtLlE~~eLv~~leekfg   77 (185)
                      .+++|++.|..||+-|++|||+.|+++||
T Consensus         2 ~~eeiv~aiekltvaelaelvk~ledkfg   30 (30)
T d1zavu1           2 TIDEIIEAIEKLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             CHHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence            37899999999999999999999999998

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.83  E-value=0.023  Score=36.56  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhhcCCChhHHHHHHhhcchhhhcCCCHHHHHHHH
Q 037146          130 KLKVIKEVRGFTGLGLKESKELVEKVPTLLKRGVTKDEADKIV  172 (185)
Q Consensus       130 Ki~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAe~ik  172 (185)
                      ++..||.+|+.||.|+++.|+.++.+      |-..|.|.++-
T Consensus         2 ~~elvK~LR~~Tga~~~dcKkAL~e~------~gD~ekA~e~L   38 (52)
T d1aipc1           2 QMELIKKLREATGAGMMDVKRALEDA------GWDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHT------TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHc------CCCHHHHHHHH
Confidence            68999999999999999999998754      34455555543

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.58  E-value=0.072  Score=34.40  Aligned_cols=26  Identities=27%  Similarity=0.477  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHhhcc
Q 037146          131 LKVIKEVRGFTGLGLKESKELVEKVP  156 (185)
Q Consensus       131 i~vIK~VR~it~LgLkEAK~lVe~~P  156 (185)
                      ...||.+|+.||.|+++.|+.++.+-
T Consensus         5 ~~~iK~LR~~Tgag~~dCKkAL~e~~   30 (54)
T d1efub3           5 ASLVKELRERTGAGMMDCKKALTEAN   30 (54)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            47899999999999999999887543

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.68  E-value=0.098  Score=33.98  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=23.1

Q ss_pred             HHHHHHHHhhcCCChhHHHHHHhhcc
Q 037146          131 LKVIKEVRGFTGLGLKESKELVEKVP  156 (185)
Q Consensus       131 i~vIK~VR~it~LgLkEAK~lVe~~P  156 (185)
                      ..+||++|+.||.|+++.|+.++.+-
T Consensus         5 ~~lvk~LRe~Tga~~~dcKkAL~e~~   30 (56)
T d1xb2b1           5 KELLMKLRRKTGYSFINCKKALETCG   30 (56)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            57899999999999999999987653