Citrus Sinensis ID: 037152

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MNEELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRKILKKKKGI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccccccccccccccccccHHHcccEEEccccccccccccccccccccHccccHHHHHHHHccc
Coil and Loop (DISEMBL)
mneelwqrkcshcetrhtpqwrvgplgpktlcnacgvryksgrllpeyrpaasptfdvhihSNFHRKILKKKKGI
Flexible Loop (DISEMBL)
MNEELWQRkcshcetrhtpqwrvgplgpKTLCNACGVRYKSGRLLPEYRPAAsptfdvhihsnfhrkilkkkkgi
Low Complexity Region (SEG)
MNEELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRKILKKKKGI
Disordered region (IsUnstruct)
*******RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK********
Disordered Region (DISOPRED)
******Q**CSHCETRHTPQWRVGPLGPKTLCNACGVR*******************************K*****
Disordered Region (DISEMBL)
**********SHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRKILKKKKGI
Disordered Region (DISPRO)
*****WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTF*V*****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNEELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRKILKKKKGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q9SV30	322	GATA transcription factor	yes	no	0.946	0.220	0.676	8e-26
Q8L4M6	269	GATA transcription factor	no	no	0.933	0.260	0.714	9e-26
O82632	308	GATA transcription factor	no	no	0.88	0.214	0.696	1e-25
P69781	331	GATA transcription factor	no	no	0.893	0.202	0.701	2e-25
Q9FH57	339	GATA transcription factor	no	no	0.893	0.197	0.716	9e-25
Q6DBP8	303	GATA transcription factor	no	no	0.96	0.237	0.666	3e-24
Q8LAU9	274	GATA transcription factor	no	no	0.92	0.251	0.695	4e-24
Q9SD38	312	GATA transcription factor	no	no	0.88	0.211	0.681	9e-24
O49743	240	GATA transcription factor	no	no	0.88	0.275	0.696	1e-23
Q8VZP4	308	GATA transcription factor	no	no	0.88	0.214	0.727	1e-23

>sp|Q9SV30|GATA8_ARATH GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1

 Score =  115 bits (288), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 48/71 (67%), Positives = 57/71 (80%)

Query: 2   NEELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIH 61
           +E+   RKC HCE   TPQWR+GP+GPKTLCNACGVRYKSGRL PEYRPAASPTF   +H
Sbjct: 223 SEQYPLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALH 282

Query: 62  SNFHRKILKKK 72
           SN H+K+ + +
Sbjct: 283 SNSHKKVAEMR 293

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 59/70 (84%)

Query: 5   LWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNF 64
           ++QR+CSHC T +TPQWR GP+GPKTLCNACGVR+KSGRL PEYRPA SPTF   IHSN 
Sbjct: 177 VFQRRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNL 236

Query: 65  HRKILKKKKG 74
           HRK+L+ +K 
Sbjct: 237 HRKVLELRKS 246

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O82632|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/66 (69%), Positives = 56/66 (84%)

Query: 8   RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
           R+C HC T  TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPA+SPTF +  HSN HRK
Sbjct: 197 RRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRK 256

Query: 68  ILKKKK 73
           +++ ++
Sbjct: 257 VMELRR 262

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/67 (70%), Positives = 57/67 (85%)

Query: 7   QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHR 66
           +R+C HC T  TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPAASPTF +  HSN HR
Sbjct: 218 ERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHR 277

Query: 67  KILKKKK 73
           K+++ ++
Sbjct: 278 KVMELRR 284

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH57|GATA5_ARATH GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 56/67 (83%)

Query: 7   QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHR 66
           QRKCSHC  + TPQWR GP+G KTLCNACGVRYKSGRLLPEYRPA SPTF   +HSN HR
Sbjct: 248 QRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHR 307

Query: 67  KILKKKK 73
           K+++ ++
Sbjct: 308 KVIEMRR 314

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 59/72 (81%)

Query: 2   NEELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIH 61
           N +   RKC+HCET  TPQWR GP GPKTLCNACGVR++SGRL+PEYRPA+SPTF   +H
Sbjct: 214 NSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVH 273

Query: 62  SNFHRKILKKKK 73
           SN HRKI++ ++
Sbjct: 274 SNSHRKIIEMRR 285

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 54/69 (78%)

Query: 5   LWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNF 64
           +  RKC HC    TPQWR GP GPKTLCNACGVRYKSGRL+PEYRPA SPTF   +HSN 
Sbjct: 191 IMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNS 250

Query: 65  HRKILKKKK 73
           HRKI++ +K
Sbjct: 251 HRKIVEMRK 259

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SD38|GATA6_ARATH GATA transcription factor 6 OS=Arabidopsis thaliana GN=GATA6 PE=2 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/66 (68%), Positives = 53/66 (80%)

Query: 8   RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
           R+C HC  + TPQWR GPLG KTLCNACGVRYKSGRLLPEYRPA SPTF   +HSN H K
Sbjct: 221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSK 280

Query: 68  ILKKKK 73
           +++ ++
Sbjct: 281 VIEMRR 286

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 57/66 (86%)

Query: 8   RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
           R+C+HC +  TPQWR GPLGPKTLCNACGVRYKSGRL+PEYRPA+SPTF +  HSN HRK
Sbjct: 158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 217

Query: 68  ILKKKK 73
           +++ ++
Sbjct: 218 VMELRR 223

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZP4|GAT10_ARATH GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 56/66 (84%)

Query: 8   RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
           R C+HCET  TPQWR GP GPKTLCNACGVR+KSGRL+PEYRPA+SPTF   +HSN HRK
Sbjct: 218 RICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRK 277

Query: 68  ILKKKK 73
           I++ +K
Sbjct: 278 IIEMRK 283

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
302398797	323	GATA domain class transcription factor [	0.906	0.210	0.720	4e-25
255543845	368	GATA transcription factor, putative [Ric	0.906	0.184	0.735	8e-25
297816774	319	BME3/BME3-ZF [Arabidopsis lyrata subsp.	0.88	0.206	0.727	9e-25
37572449	326	AG-motif binding protein-4 [Nicotiana ta	0.88	0.202	0.712	9e-25
312281983	269	unnamed protein product [Thellungiella h	0.92	0.256	0.739	9e-25
413949864	384	putative GATA transcription factor famil	0.88	0.171	0.772	1e-24
297802492	268	hypothetical protein ARALYDRAFT_491187 [	0.933	0.261	0.714	1e-24
413939386	422	putative GATA transcription factor famil	0.88	0.156	0.696	1e-24
413952458	375	putative GATA transcription factor famil	0.88	0.176	0.727	2e-24
289540932	312	zinc finger (GATA type) family protein [	0.986	0.237	0.684	2e-24

>gi|302398797|gb|ADL36693.1| GATA domain class transcription factor [Malus x domestica]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/68 (72%), Positives = 58/68 (85%)

Query: 6   WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFH 65
           +QR+CSHC+ + TPQWR GPLGPKTLCNACGVR+KSGRL PEYRPA SPTF   +HSN H
Sbjct: 238 FQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDVHSNSH 297

Query: 66  RKILKKKK 73
           RK+L+ +K
Sbjct: 298 RKVLEMRK 305

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543845|ref|XP_002512985.1| GATA transcription factor, putative [Ricinus communis] gi|223547996|gb|EEF49488.1| GATA transcription factor, putative [Ricinus communis]

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/68 (73%), Positives = 57/68 (83%)

Query: 6   WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFH 65
           +QR+CSHC+ + TPQWR GPLG KTLCNACGVRYKSGRL PEYRPA SPTF   IHSN H
Sbjct: 283 FQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFSGDIHSNSH 342

Query: 66  RKILKKKK 73
           RK+L+ +K
Sbjct: 343 RKVLEIRK 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816774|ref|XP_002876270.1| BME3/BME3-ZF [Arabidopsis lyrata subsp. lyrata] gi|297322108|gb|EFH52529.1| BME3/BME3-ZF [Arabidopsis lyrata subsp. lyrata]

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 55/66 (83%)

Query: 7   QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHR 66
           QRKC HCE   TPQWR+GP+GPKTLCNACGVRYKSGRL PEYRPAASPTF   +HSN H+
Sbjct: 225 QRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHK 284

Query: 67  KILKKK 72
           K+ + +
Sbjct: 285 KVAEMR 290

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37572449|dbj|BAC98494.1| AG-motif binding protein-4 [Nicotiana tabacum]

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/66 (71%), Positives = 56/66 (84%)

Query: 8   RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
           R+C+HC+ + TPQWR GPLGPKTLCNACGVRYKSGRL PEYRPA SPTF   +HSN HRK
Sbjct: 242 RRCTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSQEVHSNSHRK 301

Query: 68  ILKKKK 73
           +L+ ++
Sbjct: 302 VLEMRR 307

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281983|dbj|BAJ33857.1| unnamed protein product [Thellungiella halophila]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 58/69 (84%)

Query: 6   WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFH 65
           +QR+CSHC T +TPQWR GPLGPKTLCNACGVR+KSGRL PEYRPA SPTF   IHSN H
Sbjct: 174 FQRRCSHCGTNNTPQWRTGPLGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLH 233

Query: 66  RKILKKKKG 74
           RK+L+ +K 
Sbjct: 234 RKVLELRKS 242

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413949864|gb|AFW82513.1| putative GATA transcription factor family protein [Zea mays]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/66 (77%), Positives = 57/66 (86%)

Query: 8   RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
           R+C HCET  TPQWR GPLGPKTLCNACGVRYKSGRL+PEYRPAASPTF V  HSN HRK
Sbjct: 248 RRCLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVVSKHSNSHRK 307

Query: 68  ILKKKK 73
           +L+ ++
Sbjct: 308 VLELRR 313

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802492|ref|XP_002869130.1| hypothetical protein ARALYDRAFT_491187 [Arabidopsis lyrata subsp. lyrata] gi|297314966|gb|EFH45389.1| hypothetical protein ARALYDRAFT_491187 [Arabidopsis lyrata subsp. lyrata]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 59/70 (84%)

Query: 5   LWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNF 64
           ++QR+CSHC T +TPQWR GP+GPKTLCNACGVR+KSGRL PEYRPA SPTF   IHSN 
Sbjct: 176 VFQRRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSTEIHSNL 235

Query: 65  HRKILKKKKG 74
           HRK+L+ +K 
Sbjct: 236 HRKVLELRKS 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413939386|gb|AFW73937.1| putative GATA transcription factor family protein isoform 1 [Zea mays] gi|413939387|gb|AFW73938.1| putative GATA transcription factor family protein isoform 2 [Zea mays] gi|413939388|gb|AFW73939.1| putative GATA transcription factor family protein isoform 3 [Zea mays] gi|413939389|gb|AFW73940.1| putative GATA transcription factor family protein isoform 4 [Zea mays]

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/66 (69%), Positives = 56/66 (84%)

Query: 8   RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
           R+C+HC+   TPQWR GPLGPKTLCNACGVRYKSGRL PEYRPAASPTF   IHSN H++
Sbjct: 337 RRCTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPSIHSNSHKR 396

Query: 68  ILKKKK 73
           +++ ++
Sbjct: 397 VVEMRQ 402

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413952458|gb|AFW85107.1| putative GATA transcription factor family protein [Zea mays]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 57/66 (86%)

Query: 8   RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
           R+C HC+T  TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPAASPTF +  HSN HRK
Sbjct: 244 RRCVHCDTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMSKHSNSHRK 303

Query: 68  ILKKKK 73
           +L+ ++
Sbjct: 304 VLELRR 309

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289540932|gb|ADD09603.1| zinc finger (GATA type) family protein [Trifolium repens]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/76 (68%), Positives = 60/76 (78%), Gaps = 2/76 (2%)

Query: 2   NEELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIH 61
           +E   QR+CSHC+ + TPQWR GPLG KTLCNACGVRYKSGRL  EYRPA SPTF   IH
Sbjct: 220 HEAHLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIH 279

Query: 62  SNFHRKIL--KKKKGI 75
           SN HRK+L  +K+KG+
Sbjct: 280 SNSHRKVLEMRKRKGM 295

Source: Trifolium repens

Species: Trifolium repens

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.92	0.256	0.724	3.2e-26
TAIR|locus:2155056	339	GATA5 "GATA transcription fact	0.893	0.197	0.716	1.8e-25
TAIR|locus:2082637	322	BME3 "BLUE MICROPYLAR END 3" [	0.946	0.220	0.676	9.7e-25
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.88	0.240	0.727	9.7e-25
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.893	0.202	0.701	1.6e-24
TAIR|locus:2205100	303	GATA11 "GATA transcription fac	0.88	0.217	0.712	1.6e-24
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.88	0.275	0.696	2.6e-24
TAIR|locus:2123738	308	GATA9 "GATA transcription fact	0.88	0.214	0.696	3.3e-24
TAIR|locus:2205090	308	GATA10 "GATA transcription fac	0.88	0.214	0.727	4.2e-24
TAIR|locus:2122214	238	GATA7 "GATA transcription fact	0.933	0.294	0.685	5.3e-24

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 50/69 (72%), Positives = 59/69 (85%)

Query:     5 LWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNF 64
             ++QR+CSHC T +TPQWR GP+GPKTLCNACGVR+KSGRL PEYRPA SPTF   IHSN 
Sbjct:   177 VFQRRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNL 236

Query:    65 HRKILKKKK 73
             HRK+L+ +K
Sbjct:   237 HRKVLELRK 245

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2155056 GATA5 "GATA transcription factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 48/67 (71%), Positives = 56/67 (83%)

Query:     7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHR 66
             QRKCSHC  + TPQWR GP+G KTLCNACGVRYKSGRLLPEYRPA SPTF   +HSN HR
Sbjct:   248 QRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHR 307

Query:    67 KILKKKK 73
             K+++ ++
Sbjct:   308 KVIEMRR 314

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2082637 BME3 "BLUE MICROPYLAR END 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 48/71 (67%), Positives = 57/71 (80%)

Query:     2 NEELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIH 61
             +E+   RKC HCE   TPQWR+GP+GPKTLCNACGVRYKSGRL PEYRPAASPTF   +H
Sbjct:   223 SEQYPLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALH 282

Query:    62 SNFHRKILKKK 72
             SN H+K+ + +
Sbjct:   283 SNSHKKVAEMR 293

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 48/66 (72%), Positives = 53/66 (80%)

Query:     8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
             RKC HC    TPQWR GP GPKTLCNACGVRYKSGRL+PEYRPA SPTF   +HSN HRK
Sbjct:   194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRK 253

Query:    68 ILKKKK 73
             I++ +K
Sbjct:   254 IVEMRK 259

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 47/67 (70%), Positives = 57/67 (85%)

Query:     7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHR 66
             +R+C HC T  TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPAASPTF +  HSN HR
Sbjct:   218 ERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHR 277

Query:    67 KILKKKK 73
             K+++ ++
Sbjct:   278 KVMELRR 284

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2205100 GATA11 "GATA transcription factor 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 47/66 (71%), Positives = 57/66 (86%)

Query:     8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
             RKC+HCET  TPQWR GP GPKTLCNACGVR++SGRL+PEYRPA+SPTF   +HSN HRK
Sbjct:   220 RKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRK 279

Query:    68 ILKKKK 73
             I++ ++
Sbjct:   280 IIEMRR 285

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 46/66 (69%), Positives = 57/66 (86%)

Query:     8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
             R+C+HC +  TPQWR GPLGPKTLCNACGVRYKSGRL+PEYRPA+SPTF +  HSN HRK
Sbjct:   158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 217

Query:    68 ILKKKK 73
             +++ ++
Sbjct:   218 VMELRR 223

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2123738 GATA9 "GATA transcription factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 46/66 (69%), Positives = 56/66 (84%)

Query:     8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
             R+C HC T  TPQWR GP+GPKTLCNACGVRYKSGRL+PEYRPA+SPTF +  HSN HRK
Sbjct:   197 RRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRK 256

Query:    68 ILKKKK 73
             +++ ++
Sbjct:   257 VMELRR 262

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2205090 GATA10 "GATA transcription factor 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 48/66 (72%), Positives = 56/66 (84%)

Query:     8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHSNFHRK 67
             R C+HCET  TPQWR GP GPKTLCNACGVR+KSGRL+PEYRPA+SPTF   +HSN HRK
Sbjct:   218 RICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRK 277

Query:    68 ILKKKK 73
             I++ +K
Sbjct:   278 IIEMRK 283

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2122214 GATA7 "GATA transcription factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 48/70 (68%), Positives = 57/70 (81%)

Query:     1 MNEELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHI 60
             + ++  +R CSHC  + TPQWR+GPLG KTLCNACGVR+KSGRLLPEYRPA SPTF   I
Sbjct:   157 VQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEI 216

Query:    61 HSNFHRKILK 70
             HSN HRK+L+
Sbjct:   217 HSNSHRKVLE 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__620__AT4G34680.2 annotation not avaliable (268 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	75
pfam00320	36	pfam00320, GATA, GATA zinc finger	2e-13
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	2e-12
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	4e-12

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 57.3 bits (139), Expect = 2e-13
 Identities = 20/36 (55%), Positives = 24/36 (66%)

Query: 10 CSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLL 45
          CS+C T  TP WR GP G +TLCNACG+ Y+   L 
Sbjct: 1  CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 55.1 bits (133), Expect = 2e-12
 Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 8  RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFD 57
          R CS+C T  TP WR GP G KTLCNACG+ YK    L   RP +     
Sbjct: 4  RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDG 51

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 54.7 bits (132), Expect = 4e-12
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 9  KCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDV 58
           CS+C T  TP WR GP G  TLCNACG+ +K        RP +    D 
Sbjct: 1  ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKKDQ 47

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.68
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.66
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.63
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	99.02
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.54
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	91.8
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	90.92
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	84.12
PRK03988	138	translation initiation factor IF-2 subunit beta; V	83.17
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	82.87
PF01783	56	Ribosomal_L32p: Ribosomal L32p protein family; Int	82.46
smart00653	110	eIF2B_5 domain present in translation initiation f	82.27
TIGR00311	133	aIF-2beta translation initiation factor aIF-2, bet	81.72
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	80.35

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.68  E-value=3.1e-17  Score=96.10  Aligned_cols=44  Identities=48%  Similarity=0.958  Sum_probs=37.5

Q ss_pred             cccccCccCCCCcccCCCCCcccChhhhhhhhhCCCCCCCCCCCCCC
Q 037152            9 KCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPT   55 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~p~~~~~~~p~   55 (75)
                      +|+||++++||+||+||+|..+||||||++|++++   ..+|...+.
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~---~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC---CCCCcccCc
Confidence            59999999999999999887899999999999876   455555444

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.66  E-value=7.3e-17  Score=93.67  Aligned_cols=40  Identities=58%  Similarity=1.047  Sum_probs=36.3

Q ss_pred             cCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCC
Q 037152            6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLL   45 (75)
Q Consensus         6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~   45 (75)
                      ....|+||++++||+||+||.|..+|||||||+|++++.+
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            4678999999999999999999879999999999987654

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.63  E-value=4.1e-17  Score=88.57  Aligned_cols=35  Identities=60%  Similarity=1.178  Sum_probs=28.0

Q ss_pred             ccccCccCCCCcccCCCCCcccChhhhhhhhhCCC
Q 037152           10 CSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRL   44 (75)
Q Consensus        10 C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~   44 (75)
                      |++|++++||+||++|.|..+|||+||++|++++.
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999987899999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=99.02  E-value=3.6e-10  Score=76.29  Aligned_cols=49  Identities=67%  Similarity=1.316  Sum_probs=42.6

Q ss_pred             CCcccccCccCCCCcccCCCCCcccChhhhhhhhhC---CCCCCCCCCCCCC
Q 037152            7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSG---RLLPEYRPAASPT   55 (75)
Q Consensus         7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~---~~~p~~~~~~~p~   55 (75)
                      ...|.+|+++.||+||+++.|...+|||||++|+++   +.++.+.....+.
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~  250 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPR  250 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCcccccc
Confidence            578999999999999999999889999999999998   6667766666555

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.54  E-value=4e-08  Score=78.17  Aligned_cols=54  Identities=33%  Similarity=0.608  Sum_probs=44.5

Q ss_pred             cCCcccccCccCCCCcccCCC-----CCcccChhhhhhhhhCCCCCCCCCCCCCCCcccccc
Q 037152            6 WQRKCSHCETRHTPQWRVGPL-----GPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHS   62 (75)
Q Consensus         6 ~~~~C~~C~t~~Tp~WR~gp~-----G~~~LCNaCGl~~~~~~~~p~~~~~~~p~~~~~~~s   62 (75)
                      ...+|.||.++.||+|||++.     | -+|||||||+|+.++..-.  |.+.+.+.+.+++
T Consensus       157 ~~~vc~Nc~t~stPlwrR~~~~~s~~~-n~lcnaCgl~~klhg~~r~--P~t~ks~~~ks~~  215 (498)
T COG5641         157 QPHVCSNCKTTSTPLWRRASSESSLPG-NNLCNACGLYLKLHGSPRA--PISLKSDSIKSRS  215 (498)
T ss_pred             ccchhccccccCCccccccccccccCC-ccccccccccccccCCcCC--Ccccccccccccc
Confidence            344899999999999999999     6 6899999999998775443  7777777776666

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=91.80  E-value=0.13  Score=42.28  Aligned_cols=36  Identities=33%  Similarity=0.680  Sum_probs=29.4

Q ss_pred             CCcccccCccCCCCc-ccCC-CCCcccChhhhhhhhhC
Q 037152            7 QRKCSHCETRHTPQW-RVGP-LGPKTLCNACGVRYKSG   42 (75)
Q Consensus         7 ~~~C~~C~t~~Tp~W-R~gp-~G~~~LCNaCGl~~~~~   42 (75)
                      .+.|.+|+|+++-+| ..|| +-...||..|-++|++.
T Consensus       386 g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKy  423 (693)
T KOG3554|consen  386 GRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKY  423 (693)
T ss_pred             CCcccccccccccceeccCCCCccchhhHHHHHHHHHh
Confidence            568999999999999 3455 44457999999999983

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=90.92  E-value=0.053  Score=29.02  Aligned_cols=30  Identities=23%  Similarity=0.556  Sum_probs=15.2

Q ss_pred             CcccccCccCCCCcccCCCCCcccChhhhh
Q 037152            8 RKCSHCETRHTPQWRVGPLGPKTLCNACGV   37 (75)
Q Consensus         8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl   37 (75)
                      +.|.+||..-+-.--.|++-.+.+|.+||.
T Consensus         1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg~   30 (34)
T PF14803_consen    1 KFCPQCGGPLERRIPEGDDRERLVCPACGF   30 (34)
T ss_dssp             -B-TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred             CccccccChhhhhcCCCCCccceECCCCCC
Confidence            479999987433333555655679999984

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.12  E-value=0.32  Score=26.42  Aligned_cols=30  Identities=23%  Similarity=0.607  Sum_probs=19.7

Q ss_pred             cccccCccCCCCcccCCCCCcccChhhhhhhhh
Q 037152            9 KCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS   41 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~   41 (75)
                      .|.+|++..  .--+...| ..+|..||+-+..
T Consensus         2 ~Cp~Cg~~~--~~~D~~~g-~~vC~~CG~Vl~e   31 (43)
T PF08271_consen    2 KCPNCGSKE--IVFDPERG-ELVCPNCGLVLEE   31 (43)
T ss_dssp             SBTTTSSSE--EEEETTTT-EEEETTT-BBEE-
T ss_pred             CCcCCcCCc--eEEcCCCC-eEECCCCCCEeec
Confidence            699999976  23334445 6799999987664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PRK03988 translation initiation factor IF-2 subunit beta; Validated

Probab=83.17  E-value=0.34  Score=32.98  Aligned_cols=29  Identities=28%  Similarity=0.621  Sum_probs=21.2

Q ss_pred             cccccCccCCCCcccCCCCCcccChhhhhh
Q 037152            9 KCSHCETRHTPQWRVGPLGPKTLCNACGVR   38 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~   38 (75)
                      .|..|+.++|-+=+++-.- -..|+|||-.
T Consensus       104 lC~~C~spdT~l~k~~r~~-~l~C~ACGa~  132 (138)
T PRK03988        104 ICPECGSPDTKLIKEGRIW-VLKCEACGAE  132 (138)
T ss_pred             ECCCCCCCCcEEEEcCCeE-EEEcccCCCC
Confidence            5999999999987653211 2359999964

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=82.87  E-value=0.96  Score=36.65  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=28.7

Q ss_pred             CCcccccCc-cCCCCcccCCCCCcccChhhhhhhhhCC
Q 037152            7 QRKCSHCET-RHTPQWRVGPLGPKTLCNACGVRYKSGR   43 (75)
Q Consensus         7 ~~~C~~C~t-~~Tp~WR~gp~G~~~LCNaCGl~~~~~~   43 (75)
                      +..+.+|.+ +.||.||+...-.-++||+||++.+..+
T Consensus       297 ~~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~~~~  334 (498)
T COG5641         297 DKKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKPPG  334 (498)
T ss_pred             hcCcccccccccCcccccccccccccccccccccCCcc
Confidence            455777776 6788888877655789999999998644

>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=82.46  E-value=0.64  Score=26.89  Aligned_cols=23  Identities=39%  Similarity=1.044  Sum_probs=15.4

Q ss_pred             CcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152            8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK   40 (75)
Q Consensus         8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~   40 (75)
                      ..|.+||...-|         +.+|.+|| +|+
T Consensus        27 ~~c~~cg~~~~~---------H~vc~~cG-~y~   49 (56)
T PF01783_consen   27 VKCPNCGEPKLP---------HRVCPSCG-YYK   49 (56)
T ss_dssp             EESSSSSSEEST---------TSBCTTTB-BSS
T ss_pred             eeeccCCCEecc---------cEeeCCCC-eEC
Confidence            467788754332         68999999 444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....

>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5

Probab=82.27  E-value=0.39  Score=31.50  Aligned_cols=28  Identities=29%  Similarity=0.547  Sum_probs=20.7

Q ss_pred             cccccCccCCCCcccCCCCCcccChhhhh
Q 037152            9 KCSHCETRHTPQWRVGPLGPKTLCNACGV   37 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl   37 (75)
                      .|..|+.++|-+=+.+..- -.-|+|||-
T Consensus        82 lC~~C~spdT~l~k~~r~~-~l~C~aCGa  109 (110)
T smart00653       82 LCPECGSPDTELIKENRLF-FLKCEACGA  109 (110)
T ss_pred             ECCCCCCCCcEEEEeCCeE-EEEccccCC
Confidence            5999999999988873211 234999995

>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative

Probab=81.72  E-value=0.42  Score=32.34  Aligned_cols=30  Identities=27%  Similarity=0.622  Sum_probs=21.5

Q ss_pred             cccccCccCCCCcccCCCCCcccChhhhhhh
Q 037152            9 KCSHCETRHTPQWRVGPLGPKTLCNACGVRY   39 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~   39 (75)
                      .|..|+.++|-+=+.+-.- -.-|+|||-..
T Consensus        99 lC~~C~sPdT~l~k~~r~~-~l~C~ACGa~~  128 (133)
T TIGR00311        99 ICRECNRPDTRIIKEGRVS-LLKCEACGAKA  128 (133)
T ss_pred             ECCCCCCCCcEEEEeCCeE-EEecccCCCCC
Confidence            5999999999987753211 23599999643

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=80.35  E-value=0.69  Score=35.39  Aligned_cols=31  Identities=32%  Similarity=0.813  Sum_probs=27.5

Q ss_pred             cccCCcccccCccCCCCcccCCCCCcccChhhh
Q 037152            4 ELWQRKCSHCETRHTPQWRVGPLGPKTLCNACG   36 (75)
Q Consensus         4 ~~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCG   36 (75)
                      ......|..|++.. |+|-.-.-| ..||-.|.
T Consensus        17 ~~~Nk~CaDCga~~-P~W~S~nlG-vfiCi~Ca   47 (319)
T COG5347          17 DSSNKKCADCGAPN-PTWASVNLG-VFLCIDCA   47 (319)
T ss_pred             ccccCccccCCCCC-CceEecccC-eEEEeecc
Confidence            34578999999999 999999999 79999993

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	5e-13
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	2e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	1e-08
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	9e-07
3dfx_A	63	Trans-acting T-cell-specific transcription factor	1e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 56.8 bits (137), Expect = 5e-13
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 7  QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAA 52
            +CS+C    T +WR         CNAC +  +      + RP  
Sbjct: 8  SFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPVT 50

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 49.7 bits (119), Expect = 2e-10
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 7  QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40
           R+C +C    TP WR    G   LCNACG+ +K
Sbjct: 4  ARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 45.2 bits (107), Expect = 1e-08
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 8  RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40
            C++C T+ TP WR  P G + LCNACG+  K
Sbjct: 2  TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 33

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 40.8 bits (95), Expect = 9e-07
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 7  QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40
             C++C T+ TP WR  P G + LCNACG+  K
Sbjct: 9  PTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK 41

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 40.8 bits (95), Expect = 1e-06
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 7  QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40
             C++C+T  T  WR    G   +CNACG+ YK
Sbjct: 7  GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYK 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.76
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.74
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.73
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.72
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.62
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.58
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.48
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	90.91
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	85.86
3cw2_K	139	Translation initiation factor 2 subunit beta; AIF2	85.68
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	84.83
2d74_B	148	Translation initiation factor 2 beta subunit; prot	84.58
3k7a_M	345	Transcription initiation factor IIB; RNA polymeras	82.76
1k81_A	36	EIF-2-beta, probable translation initiation factor	82.66
1nee_A	138	EIF-2-beta, probable translation initiation factor	81.79

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.76  E-value=3.9e-19  Score=106.65  Aligned_cols=55  Identities=29%  Similarity=0.619  Sum_probs=44.6

Q ss_pred             cccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCCCCCCCCCCCCCcccccc
Q 037152            4 ELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIHS   62 (75)
Q Consensus         4 ~~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~p~~~~~~~p~~~~~~~s   62 (75)
                      ......|++|++++||+||+||+|. +|||||||+|++++.   .+|....++..+++.
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~~~~~~~i~~R~   58 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPLTMKKEGIQTRN   58 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCGGGCCSSCCCCC
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCcCcCCCcccccc
Confidence            3467899999999999999999996 999999999998774   566666655554443

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.74  E-value=5.8e-19  Score=106.63  Aligned_cols=55  Identities=36%  Similarity=0.638  Sum_probs=45.3

Q ss_pred             ccccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCCCCCCCCCCCCCccccc
Q 037152            3 EELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHIH   61 (75)
Q Consensus         3 ~~~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~p~~~~~~~p~~~~~~~   61 (75)
                      +......|++|++++||+||+||+|. +|||||||+|++++.   .+|.+..++.++++
T Consensus         5 ~~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~---~RP~~~k~~~ik~R   59 (66)
T 4gat_A            5 EQNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV---VRPLSLKTDVIKKR   59 (66)
T ss_dssp             CSSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS---CCCGGGCCSCCCCC
T ss_pred             CCCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC---CCchhhcccccccc
Confidence            45678999999999999999999995 999999999998664   56666666555544

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.73  E-value=3.1e-18  Score=97.19  Aligned_cols=39  Identities=38%  Similarity=0.722  Sum_probs=35.4

Q ss_pred             cCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCC
Q 037152            6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLL   45 (75)
Q Consensus         6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~   45 (75)
                      ....|++|++++||+||+||+|. +|||||||+|++++.+
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN   41 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence            56789999999999999999995 9999999999987743

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.72  E-value=1.7e-18  Score=97.09  Aligned_cols=37  Identities=43%  Similarity=0.929  Sum_probs=33.9

Q ss_pred             CcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCC
Q 037152            8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLL   45 (75)
Q Consensus         8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~   45 (75)
                      ..|++|++++||+||+||+|. +|||||||+|++++.+
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~   38 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV   38 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence            579999999999999999996 9999999999987643

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.62  E-value=1.3e-16  Score=97.51  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=32.4

Q ss_pred             cccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCC
Q 037152            4 ELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRL   44 (75)
Q Consensus         4 ~~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~   44 (75)
                      ......|+||+|++||+||+|+.+..+|||||||+|++++.
T Consensus         5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~   45 (71)
T 2kae_A            5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK   45 (71)
T ss_dssp             ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS
T ss_pred             CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC
Confidence            45678999999999999999544434999999999998653

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.58  E-value=6.4e-16  Score=101.15  Aligned_cols=52  Identities=31%  Similarity=0.650  Sum_probs=42.8

Q ss_pred             ccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCCCCCCCCCCCCCCcccc
Q 037152            5 LWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAASPTFDVHI   60 (75)
Q Consensus         5 ~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~~p~~~~~~~p~~~~~~   60 (75)
                      .....|++|++++||+||+||+| .+|||||||||++++.   .+|.+..++.++.
T Consensus        57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~---~rp~~~~~~~i~~  108 (115)
T 4hc9_A           57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNI---NRPLTMKKEGIQT  108 (115)
T ss_dssp             CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS---CCCGGGCCSSCCC
T ss_pred             cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCC---CCCccccccchhh
Confidence            45689999999999999999999 8999999999998764   3666666555444

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.48  E-value=2.2e-14  Score=93.88  Aligned_cols=40  Identities=38%  Similarity=0.749  Sum_probs=33.2

Q ss_pred             cccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCC
Q 037152            4 ELWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRL   44 (75)
Q Consensus         4 ~~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~   44 (75)
                      +...++|+||++++||+||+|++| .+|||||||||+.++.
T Consensus         2 ~~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~   41 (115)
T 4hc9_A            2 SHMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQ   41 (115)
T ss_dssp             ----CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhccc
Confidence            346789999999999999999999 7999999999987543

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=90.91  E-value=0.1  Score=28.27  Aligned_cols=40  Identities=25%  Similarity=0.562  Sum_probs=26.1

Q ss_pred             CcccccCccCCCCcccCCCCCcccChhhhhhhhhCCC--CCCCCC
Q 037152            8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRL--LPEYRP   50 (75)
Q Consensus         8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~--~p~~~~   50 (75)
                      ..|.+|+.+  ++-.+...| ..+|..||+-|.....  -|+||.
T Consensus         6 ~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~   47 (50)
T 1pft_A            6 KVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA   47 (50)
T ss_dssp             CSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred             EeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence            469999873  333333445 6899999998875443  255553

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=85.86  E-value=0.43  Score=26.96  Aligned_cols=41  Identities=17%  Similarity=0.316  Sum_probs=28.7

Q ss_pred             CCcccccCccCCCCcccCCCCCcccChhhhhhhhhCC--CCCCCCC
Q 037152            7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGR--LLPEYRP   50 (75)
Q Consensus         7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~--~~p~~~~   50 (75)
                      ...|..|+...  .-.....| .++|..||+-+..+.  .-|+||.
T Consensus        11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~   53 (58)
T 1dl6_A           11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRT   53 (58)
T ss_dssp             CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCC
T ss_pred             cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCcccc
Confidence            34799998754  44455566 689999999987543  3466764

>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*

Probab=85.68  E-value=0.42  Score=31.61  Aligned_cols=30  Identities=27%  Similarity=0.473  Sum_probs=19.6

Q ss_pred             CcccccCccCCCCcccCCCCCcccChhhhhh
Q 037152            8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVR   38 (75)
Q Consensus         8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~   38 (75)
                      -.|..|+.++|-+=+++..- -.-|+|||-.
T Consensus       104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~  133 (139)
T 3cw2_K          104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQ  133 (139)
T ss_dssp             SSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred             eECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence            46999999999998864222 2459999964

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.83  E-value=1  Score=29.64  Aligned_cols=46  Identities=20%  Similarity=0.532  Sum_probs=32.0

Q ss_pred             cCCcccccCccCCCCcccCCCCCcccChhhhhhhhh-CCCCCCCCCCCC
Q 037152            6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKS-GRLLPEYRPAAS   53 (75)
Q Consensus         6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~-~~~~p~~~~~~~   53 (75)
                      ....|++|++. .|.|-.-..| ..||-.|.-..+. +..+...+..+.
T Consensus        28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~l   74 (141)
T 2crr_A           28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNL   74 (141)
T ss_dssp             GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSS
T ss_pred             cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCC
Confidence            45789999986 5999999899 7899999544443 333344444433

>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*

Probab=84.58  E-value=0.45  Score=31.86  Aligned_cols=31  Identities=23%  Similarity=0.442  Sum_probs=22.8

Q ss_pred             CcccccCccCCCCcccCCCCCcccChhhhhhh
Q 037152            8 RKCSHCETRHTPQWRVGPLGPKTLCNACGVRY   39 (75)
Q Consensus         8 ~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~   39 (75)
                      -.|..|+.++|-+=+++..- -.-|+|||-.-
T Consensus       105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~~  135 (148)
T 2d74_B          105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAET  135 (148)
T ss_dssp             SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCCC
T ss_pred             EECCCCCCcCcEEEEeCCEE-EEEecCCCCCc
Confidence            36999999999998864222 23599999653

>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}

Probab=82.76  E-value=0.85  Score=33.14  Aligned_cols=35  Identities=17%  Similarity=0.388  Sum_probs=25.0

Q ss_pred             CCcccccCccCCCCcccCCCCCcccChhhhhhhhhC
Q 037152            7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSG   42 (75)
Q Consensus         7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~   42 (75)
                      ...|.+|+...+..-.+-..| .++|..||+=+..+
T Consensus        21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~e~   55 (345)
T 3k7a_M           21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSDK   55 (345)
T ss_dssp             CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCCCC
T ss_pred             CCcCcCCCCCCCceEEECCCC-CEecCCCCeEcccc
Confidence            557999998753343455567 78999999877643

>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1

Probab=82.66  E-value=0.1  Score=27.19  Aligned_cols=29  Identities=28%  Similarity=0.525  Sum_probs=21.1

Q ss_pred             cccccCccCCCCcccCCCCCcc-cChhhhhhh
Q 037152            9 KCSHCETRHTPQWRVGPLGPKT-LCNACGVRY   39 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~-LCNaCGl~~   39 (75)
                      .|..|+..+|-+=+++  +.-. -|+|||-..
T Consensus         2 lC~~C~~peT~l~~~~--~~~~l~C~aCG~~~   31 (36)
T 1k81_A            2 ICRECGKPDTKIIKEG--RVHLLKCMACGAIR   31 (36)
T ss_dssp             CCSSSCSCEEEEEEET--TEEEEEEETTTEEE
T ss_pred             CCcCCCCCCcEEEEeC--CcEEEEhhcCCCcc
Confidence            4899999999887754  3223 499999653

>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1

Probab=81.79  E-value=0.44  Score=31.46  Aligned_cols=29  Identities=31%  Similarity=0.702  Sum_probs=21.7

Q ss_pred             cccccCccCCCCcccCCCCCcccChhhhhh
Q 037152            9 KCSHCETRHTPQWRVGPLGPKTLCNACGVR   38 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~   38 (75)
                      .|..|+.++|-+=+++..- -.-|+|||-.
T Consensus       104 lC~~C~sPdT~l~k~~r~~-~l~C~ACGa~  132 (138)
T 1nee_A          104 ICHECNRPDTRIIREGRIS-LLKCEACGAK  132 (138)
T ss_dssp             HHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred             ECCCCCCcCcEEEEcCCeE-EEEccCCCCC
Confidence            5999999999998864222 2359999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	6e-12
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	1e-09
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	1e-06

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (125), Expect = 6e-12
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 8  RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK 40
          R+C +C    TP WR    G   LCNACG+ +K
Sbjct: 3  RECVNCGATATPLWRRDRTG-HYLCNACGLYHK 34

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 46.3 bits (110), Expect = 1e-09
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 10 CSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRLLPEYRPAA 52
          C++C T+ TP WR  P G + LCNACG+  K   L    RP +
Sbjct: 3  CTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 41

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.6 bits (92), Expect = 1e-06
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 8  RKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGR 43
            CS+C+T  T  WR  P+G   +CNACG+ YK  +
Sbjct: 5  TVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQ 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.77
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.76
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.74
d1neea2	37	Zinc-binding domain of translation initiation fact	91.29
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	88.32
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	87.84
d1k81a_	36	Zinc-binding domain of translation initiation fact	85.38
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	83.7

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=5.7e-20  Score=100.23  Aligned_cols=36  Identities=42%  Similarity=0.880  Sum_probs=33.6

Q ss_pred             CCcccccCccCCCCcccCCCCCcccChhhhhhhhhCC
Q 037152            7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGR   43 (75)
Q Consensus         7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~   43 (75)
                      .+.|+||++++||+||+||+| .+|||||||+|+.++
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G   37 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNG   37 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSC
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhC
Confidence            578999999999999999999 689999999999875

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.76  E-value=1.2e-19  Score=100.26  Aligned_cols=34  Identities=47%  Similarity=0.994  Sum_probs=31.9

Q ss_pred             cccccCccCCCCcccCCCCCcccChhhhhhhhhCC
Q 037152            9 KCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGR   43 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~   43 (75)
                      .|+||++++||+||+||+| .+|||||||||+.++
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g   35 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHG   35 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHS
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcC
Confidence            6999999999999999999 699999999999765

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=1.4e-19  Score=108.09  Aligned_cols=38  Identities=42%  Similarity=0.946  Sum_probs=34.3

Q ss_pred             cCCcccccCccCCCCcccCCCCCcccChhhhhhhhhCCC
Q 037152            6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSGRL   44 (75)
Q Consensus         6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~~~   44 (75)
                      ....|+||++++||+||+||.| .+|||||||||+.++.
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~   40 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV   40 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCC
Confidence            4568999999999999999999 6999999999998653

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.29  E-value=0.031  Score=28.59  Aligned_cols=29  Identities=31%  Similarity=0.702  Sum_probs=21.5

Q ss_pred             cccccCccCCCCcccCCCCCcccChhhhhh
Q 037152            9 KCSHCETRHTPQWRVGPLGPKTLCNACGVR   38 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~   38 (75)
                      .|..|+...|-+-+.+-.- -.-|+|||-.
T Consensus         3 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa~   31 (37)
T d1neea2           3 ICHECNRPDTRIIREGRIS-LLKCEACGAK   31 (37)
T ss_dssp             HHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred             ECCCCCCCCCEEEEcCCEE-EEEeccCCCC
Confidence            5899999999998875221 1249999954

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.32  E-value=0.043  Score=29.25  Aligned_cols=41  Identities=27%  Similarity=0.595  Sum_probs=26.2

Q ss_pred             CCcccccCccCCCCcccCCCCCcccChhhhhhhhhC--CCCCCCCC
Q 037152            7 QRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSG--RLLPEYRP   50 (75)
Q Consensus         7 ~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~--~~~p~~~~   50 (75)
                      ...|.+|+...  .-.+...| ..+|..||+=+...  -.-|+||.
T Consensus         5 ~~~Cp~Cgs~~--iv~D~~~G-e~vC~~CG~Viee~~iD~gpEWR~   47 (50)
T d1pfta_           5 QKVCPACESAE--LIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA   47 (50)
T ss_dssp             CCSCTTTSCCC--EEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred             cccCcCCCCCc--EEEECCCC-eEecccCCcEeccccccCCCcccc
Confidence            56899998653  33445556 78999999855432  22356654

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.12  Score=28.25  Aligned_cols=43  Identities=19%  Similarity=0.307  Sum_probs=27.3

Q ss_pred             ccCCcccccCccCCCCcccCCCCCcccChhhhhhhhhC--CCCCCCCC
Q 037152            5 LWQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYKSG--RLLPEYRP   50 (75)
Q Consensus         5 ~~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~~~--~~~p~~~~   50 (75)
                      +....|.+|+...  .--+...| ..+|..||+=+..+  -.-|+||.
T Consensus         9 ~~~~~Cp~Cgs~~--ii~D~~~G-e~vC~~CG~Vlee~~ID~g~EWR~   53 (58)
T d1dl6a_           9 LPRVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRT   53 (58)
T ss_dssp             CSCCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCC
T ss_pred             ccccCCCCCCCCC--EEEECCCC-cEecccCCCEeccccccCCCcccc
Confidence            4567899999753  22344556 68999999865432  22355553

>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.38  E-value=0.033  Score=28.33  Aligned_cols=29  Identities=28%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             cccccCccCCCCcccCCCCCcccChhhhhh
Q 037152            9 KCSHCETRHTPQWRVGPLGPKTLCNACGVR   38 (75)
Q Consensus         9 ~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~   38 (75)
                      .|..|+...|-+-+.+-.- -.-|+|||-.
T Consensus         2 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa~   30 (36)
T d1k81a_           2 ICRECGKPDTKIIKEGRVH-LLKCMACGAI   30 (36)
T ss_dssp             CCSSSCSCEEEEEEETTEE-EEEEETTTEE
T ss_pred             CCCCCCCCCCEEEEcCCEE-EEEeccCCCC
Confidence            5899999999888875221 1249999954

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.70  E-value=0.23  Score=30.16  Aligned_cols=33  Identities=24%  Similarity=0.556  Sum_probs=26.8

Q ss_pred             cCCcccccCccCCCCcccCCCCCcccChhhhhhhh
Q 037152            6 WQRKCSHCETRHTPQWRVGPLGPKTLCNACGVRYK   40 (75)
Q Consensus         6 ~~~~C~~C~t~~Tp~WR~gp~G~~~LCNaCGl~~~   40 (75)
                      ....|++|++. .|.|-.-..| ..||-.|.-..+
T Consensus        14 ~N~~CaDC~~~-~p~w~s~n~G-vfvC~~CsgiHR   46 (122)
T d1dcqa2          14 GNDVCCDCGAP-DPTWLSTNLG-ILTCIECSGIHR   46 (122)
T ss_dssp             TTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHH
T ss_pred             CCCccCCCCCC-CCCeEEecCC-EEEchhhhHHHh
Confidence            45789999977 5899999999 789999954433