Citrus Sinensis ID: 037179

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
METQNLSCHSSNVFAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNEEKDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASSSLLV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHccccccEEcccccccccccHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEEEEccccEEEccccEEEEcccccccHHHHHHHHHccccccccccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHcccccccccccccccEEEEccHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
metqnlschssnvfaisstnhiqieplnlfprvtynsnggstepqpslnqnrrarneekdDVAVALHiglpnyshssnnpsakgnaNVAAAkqywiptpeqilIGFTHFSCHVCFKTFNRYNNLqmhmwghgsqyrkgpeslkgtqprailgipcyccaegcknsinhpkakplkdfRTLQTHYkrkhglkpfmcrkcgkflavkgdwrthekncgkrwlcvcgsdfkhkrSLKDHIKafgsghgpfsrpfdgvevlddasssllv
Flexible Loop (DISEMBL)
metqnlschsSNVFAISSTNHIQIEPLNLFPRVTYNSNggstepqpslnqnrrARNEEKDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNsinhpkakplKDFRTLQTHykrkhglkpfmcrkCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASSSLLV
Low Complexity Region (SEG)
METQNLSCHSSNVFAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNEEKDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASSSLLV
Disordered region (IsUnstruct)
***********NVFAISSTNHIQIEPLNLFPRVTY****************************VALHIGL*****************VAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY**********QPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFG*************************
Disordered Region (DISOPRED)
*******************************************************NEEKDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKG****************CYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASSSLLV
Disordered Region (DISEMBL)
*********SSNVFAISSTNHIQIEPLNLFPRVTYNS*********************KDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLD********
Disordered Region (DISPRO)
***************ISST******PLNL*******************************DVAVALHIGLPNY***********NANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKG********PRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGP********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METQNLSCHSSNVFAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNEEKDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASSSLLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q8VWG3	303	Protein TRANSPARENT TESTA	yes	no	0.864	0.759	0.676	8e-92
Q943I6	522	Zinc finger protein STOP1	no	no	0.578	0.295	0.401	4e-24
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.537	0.286	0.429	7e-24
Q2QX40	465	Zinc finger protein STAR3	no	no	0.545	0.311	0.406	9e-20
Q700D2	503	Zinc finger protein JACKD	no	no	0.488	0.258	0.366	2e-17
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.545	0.311	0.348	6e-17
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.511	0.268	0.342	1e-16
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.312	0.101	0.3	9e-08
O43313	823	ATM interactor OS=Homo sa	yes	no	0.312	0.100	0.3	2e-07
Q8BXX2	756	Zinc finger and BTB domai	no	no	0.635	0.223	0.262	8e-07

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score =  337 bits (863), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 169/250 (67%), Positives = 184/250 (73%), Gaps = 20/250 (8%)

Query: 17  SSTNHIQIEPLNLFPRVTYNSNGGSTEPQP----SLNQNRRARNEEKDDVAVALHIGLPN 72
           S  N+  IEPL L  R+  NSN     P P       Q      EE  +V V LHIGLP 
Sbjct: 35  SCINNTLIEPLPLIDRINLNSNL-DLNPNPLYAEEGEQEEEEEEEEDREVDVDLHIGLPG 93

Query: 73  YSHSSNNP---------------SAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKT 117
           +   SN+                + KG  N  + K YWIP PEQILIGFTHFSCHVCFKT
Sbjct: 94  FGKPSNDAKQLKKRNGKEIATYDAGKGIENELSGKAYWIPAPEQILIGFTHFSCHVCFKT 153

Query: 118 FNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDF 177
           FNRYNNLQMHMWGHGSQYRKGPESLKGTQPRA+LGIPCYCC EGC+N I+HP++KPLKDF
Sbjct: 154 FNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDF 213

Query: 178 RTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHI 237
           RTLQTHYKRKHG KPF CR CGK LAVKGDWRTHEKNCGKRW+CVCGSDFKHKRSLKDH+
Sbjct: 214 RTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKRWVCVCGSDFKHKRSLKDHV 273

Query: 238 KAFGSGHGPF 247
           KAFGSGHGP+
Sbjct: 274 KAFGSGHGPY 283

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.
Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  112 bits (279), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 90/162 (55%), Gaps = 8/162 (4%)

Query: 100 EQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPC--YC 157
           E+IL   THF C +C K F R  NL+MHM GHG +Y+      K ++  ++   P   Y 
Sbjct: 274 EEILAPHTHF-CLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAPVTRYS 332

Query: 158 CA-EGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCG-KFLAVKGDWRTHEKNC 215
           C   GCK +  H K +PLK    ++ HYKR H  K + C +C  K  +V  D +THEK+C
Sbjct: 333 CPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHC 392

Query: 216 GK-RWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEV 256
           G+ +WLC CG+ F  K  L  H+  F  GH P + P D ++V
Sbjct: 393 GRDKWLCSCGTTFSRKDKLFGHVALF-QGHTP-ALPMDDIKV 432

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  110 bits (276), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 85/156 (54%), Gaps = 13/156 (8%)

Query: 100 EQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGP-------ESLKGTQPRAILG 152
           E+IL   THF C +C K F R  NL+MHM GHG +Y+          ES+ G++P  I  
Sbjct: 236 EEILAPHTHF-CTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKR 294

Query: 153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKC-GKFLAVKGDWRTH 211
             C     GCK +  H K +PLK    ++ HYKR H  K F C +C  K  +V  D +TH
Sbjct: 295 YSCPFL--GCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTH 352

Query: 212 EKNCGK-RWLCVCGSDFKHKRSLKDHIKAFGSGHGP 246
           EK+CGK +WLC CG+ F  K  L  HI  F  GH P
Sbjct: 353 EKHCGKNKWLCSCGTTFSRKDKLFGHIALF-QGHTP 387

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 81/155 (52%), Gaps = 10/155 (6%)

Query: 100 EQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPC---- 155
           ++IL   THF C +C K F R  NL+MHM GHG +Y+      K   P      P     
Sbjct: 221 DEILAPHTHF-CGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPER 279

Query: 156 -YCCA-EGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCG-KFLAVKGDWRTHE 212
            Y C   GCK +  H   +PLK    ++ HYKR H  K  +C +CG K  +V  D +THE
Sbjct: 280 RYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHE 339

Query: 213 KNCGK-RWLCVCGSDFKHKRSLKDHIKAFGSGHGP 246
           K+CG+ RWLC CG+ F  K  L  H+  F  GH P
Sbjct: 340 KHCGRDRWLCSCGTSFSRKDKLFAHVALF-QGHAP 373

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 69/139 (49%), Gaps = 9/139 (6%)

Query: 103 LIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGC 162
           L+    F C +C K F R  NLQ+H  GH       P  LK    + ++    Y C    
Sbjct: 76  LMATNRFVCEICNKGFQRDQNLQLHRRGHNL-----PWKLKQRSKQEVIKKKVYICP--I 128

Query: 163 KNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKR-WLC 221
           K  ++H  ++ L D   ++ HY RKHG K + C KC K  AV+ DW+ H K CG R + C
Sbjct: 129 KTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKC 188

Query: 222 VCGSDFKHKRSLKDHIKAF 240
            CG+ F  K S   H +AF
Sbjct: 189 DCGTLFSRKDSFITH-RAF 206

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 84  GNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLK 143
           GN +  A      PT    L+    F C VC K F R  NLQ+H  GH   ++    + K
Sbjct: 44  GNPDPEAEVIALSPT---TLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSK 100

Query: 144 GTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLA 203
             + R       Y C E  K  ++H  ++ L D   ++ H+ RKHG K + C KC K  A
Sbjct: 101 EVRKRV------YVCPE--KTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYA 152

Query: 204 VKGDWRTHEKNCGKR-WLCVCGSDFKHKRSLKDHIKAF 240
           V+ DW+ H K CG R + C CG+ F  + S   H +AF
Sbjct: 153 VQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITH-RAF 189

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 96  IPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPC 155
           I    + L+    F C +C K F R  NLQ+H  GH   ++    + K  + R       
Sbjct: 57  IALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRV------ 110

Query: 156 YCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC 215
           Y C E  K+ ++H   + L D   ++ H+ RKHG K + C KC K  AV+ DW+ H K C
Sbjct: 111 YVCPE--KSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTC 168

Query: 216 GKR-WLCVCGSDFKHKRSLKDHIKAF 240
           G R + C CG+ F  + S   H +AF
Sbjct: 169 GTREYRCDCGTIFSRRDSFITH-RAF 193

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 57.4 bits (137), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 156 YCCA-EGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN 214
           YCC  +GC    +    +P   F  ++ H+ + H  K   C KC      + D + HE++
Sbjct: 127 YCCPIKGCPRGPD----RPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEED 182

Query: 215 CGKRWLCVCGSDFKHKRSLKDHIKAFGSGH 244
           CGK + C CG  +  + +L+ HI  + +GH
Sbjct: 183 CGKTFQCTCGCPYASRTALQSHI--YRTGH 210

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 156 YCC-AEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN 214
           YCC  EGC         +P   F  ++ H+ + H  K   C KC      + D + H ++
Sbjct: 131 YCCPIEGCPRG----PERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHAED 186

Query: 215 CGKRWLCVCGSDFKHKRSLKDHIKAFGSGH 244
           CGK + C CG  +  + +L+ HI  + +GH
Sbjct: 187 CGKTFRCTCGCPYASRTALQSHI--YRTGH 214

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q8BXX2|ZBT49_MOUSE Zinc finger and BTB domain-containing protein 49 OS=Mus musculus GN=Zbtb49 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 33/202 (16%)

Query: 41  STEPQPSLNQNRRARNEEKDD-VAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTP 99
           ++ P+P     RR  +  K+D V  A              P +     +  A   W   P
Sbjct: 318 TSHPEPDNGLARREESAAKEDAVERAGSQTAEEKGRGELGPESSREEELPGAPASW-EDP 376

Query: 100 EQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCA 159
            Q L     ++C +C K F   +NL++H   H            G +P       C  C 
Sbjct: 377 SQALQPQKQYACELCGKPFKHPSNLELHKRSH-----------TGEKP-----FECNICG 420

Query: 160 EGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTH--EKNCGK 217
           +    + N            LQTH +R  G KP++C  CGK  A  GD + H    +  K
Sbjct: 421 KHFSQAGN------------LQTHLRRHSGEKPYICEICGKRFAASGDVQRHIIIHSGEK 468

Query: 218 RWLC-VCGSDFKHKRSLKDHIK 238
             LC  CG  F +  +LK+H K
Sbjct: 469 PHLCDTCGRGFSNFSNLKEHKK 490

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
255545752	285	TRANSPARENT TESTA 1 protein, putative [R	0.879	0.821	0.736	1e-105
302141969	323	unnamed protein product [Vitis vinifera]	0.958	0.789	0.672	4e-99
225459274	273	PREDICTED: protein TRANSPARENT TESTA 1 [	0.958	0.934	0.672	3e-98
18253283	303	transparent testa 1 [Arabidopsis thalian	0.864	0.759	0.676	3e-90
45935009	302	At1g34790 [Arabidopsis thaliana] gi|4636	0.864	0.761	0.674	3e-90
30693123	303	protein TRANSPARENT TESTA 1 [Arabidopsis	0.864	0.759	0.676	4e-90
297846556	301	At1g34790 [Arabidopsis lyrata subsp. lyr	0.838	0.740	0.677	4e-87
356552896	249	PREDICTED: protein TRANSPARENT TESTA 1 [	0.860	0.919	0.672	1e-86
356547927	240	PREDICTED: protein TRANSPARENT TESTA 1-l	0.868	0.962	0.675	1e-86
18376601	242	WIP1 protein [Glycine max]	0.860	0.946	0.672	2e-86

>gi|255545752|ref|XP_002513936.1| TRANSPARENT TESTA 1 protein, putative [Ricinus communis] gi|223547022|gb|EEF48519.1| TRANSPARENT TESTA 1 protein, putative [Ricinus communis]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/258 (73%), Positives = 207/258 (80%), Gaps = 24/258 (9%)

Query: 22  IQIEPLNLFPRVTYNSNGGSTEPQPSLNQ-------------NRRARNEEKDDVAVALHI 68
           I IEPL+LFP  +Y+S     EP P L+               + + + +K+DV VALHI
Sbjct: 29  IGIEPLDLFPSTSYSS----LEPMPLLSSLISSEEQAFSSENPKESIDRDKEDVTVALHI 84

Query: 69  GLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHM 128
           GLP+YS  S + S KGN NVAA KQYWIPTPEQILIGFTH+SCHVCFKTFNRYNNLQMHM
Sbjct: 85  GLPDYSQISVSSSTKGNTNVAA-KQYWIPTPEQILIGFTHYSCHVCFKTFNRYNNLQMHM 143

Query: 129 WGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKH 188
           WGHGSQYR+GPESLKGTQPRA+LGIPCYCCAEGCKN+I HPKAKPLKDFRTLQTHYKRKH
Sbjct: 144 WGHGSQYRRGPESLKGTQPRAMLGIPCYCCAEGCKNNIQHPKAKPLKDFRTLQTHYKRKH 203

Query: 189 GLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSG-HGPF 247
           GLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLC+CGSDFKHKRSLKDHIKAFGS  HGPF
Sbjct: 204 GLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGSTCHGPF 263

Query: 248 -----SRPFDGVEVLDDA 260
                S  FDG  + D  
Sbjct: 264 LPIPPSSSFDGFGLFDST 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141969|emb|CBI19172.3| unnamed protein product [Vitis vinifera]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 183/272 (67%), Positives = 206/272 (75%), Gaps = 17/272 (6%)

Query: 1   METQNLSCHSSNVFAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQP------------SL 48
           ME  ++   S+     SS ++I  E LNLFP    NS     EP P             L
Sbjct: 1   MEPSDIPFSSNPSACSSSHDNIYNELLNLFPDTRPNS----LEPLPLPSSLLCSPKAVPL 56

Query: 49  NQNRRARNEEKDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTH 108
             N +A NE+  DV V L IGLP+    S N   K ++++AA  QYWIPTP QILIGFTH
Sbjct: 57  EGNTKASNEDTGDVTVTLCIGLPDNKDGSKNAVDKRDSDIAAT-QYWIPTPAQILIGFTH 115

Query: 109 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINH 168
           FSCH+C KTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRA+L IPCYCC +GCKN+I+H
Sbjct: 116 FSCHICNKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAVLSIPCYCCTQGCKNNIDH 175

Query: 169 PKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFK 228
           P+AKPLKDFRTLQTHYKRKHG+KPFMCRKCGK LAVKGDWRTHEKNCGKRWLC CGSDFK
Sbjct: 176 PRAKPLKDFRTLQTHYKRKHGMKPFMCRKCGKCLAVKGDWRTHEKNCGKRWLCACGSDFK 235

Query: 229 HKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDA 260
           HKRSLKDHIKAFGSGHGPF  PF+GV++ +DA
Sbjct: 236 HKRSLKDHIKAFGSGHGPFPPPFEGVQLREDA 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459274|ref|XP_002284131.1| PREDICTED: protein TRANSPARENT TESTA 1 [Vitis vinifera] gi|147775649|emb|CAN67026.1| hypothetical protein VITISV_036243 [Vitis vinifera]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 183/272 (67%), Positives = 206/272 (75%), Gaps = 17/272 (6%)

Query: 1   METQNLSCHSSNVFAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQP------------SL 48
           ME  ++   S+     SS ++I  E LNLFP    NS     EP P             L
Sbjct: 1   MEPSDIPFSSNPSACSSSHDNIYNELLNLFPDTRPNS----LEPLPLPSSLLCSPKAVPL 56

Query: 49  NQNRRARNEEKDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTH 108
             N +A NE+  DV V L IGLP+    S N   K ++++AA  QYWIPTP QILIGFTH
Sbjct: 57  EGNTKASNEDTGDVTVTLCIGLPDNKDGSKNAVDKRDSDIAAT-QYWIPTPAQILIGFTH 115

Query: 109 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINH 168
           FSCH+C KTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRA+L IPCYCC +GCKN+I+H
Sbjct: 116 FSCHICNKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAVLSIPCYCCTQGCKNNIDH 175

Query: 169 PKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFK 228
           P+AKPLKDFRTLQTHYKRKHG+KPFMCRKCGK LAVKGDWRTHEKNCGKRWLC CGSDFK
Sbjct: 176 PRAKPLKDFRTLQTHYKRKHGMKPFMCRKCGKCLAVKGDWRTHEKNCGKRWLCACGSDFK 235

Query: 229 HKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDA 260
           HKRSLKDHIKAFGSGHGPF  PF+GV++ +DA
Sbjct: 236 HKRSLKDHIKAFGSGHGPFPPPFEGVQLREDA 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18253283|gb|AAL66407.1|AF190299_1 transparent testa 1 [Arabidopsis thaliana] gi|18376506|emb|CAC86393.1| Transparent Testa 1, TT1 [Arabidopsis thaliana]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 169/250 (67%), Positives = 185/250 (74%), Gaps = 20/250 (8%)

Query: 17  SSTNHIQIEPLNLFPRVTYNSNGGSTEPQP----SLNQNRRARNEEKDDVAVALHIGLPN 72
           S  N+  IEPL L  R+  NSN     P P       Q      EE  +V V LHIGLP 
Sbjct: 35  SCINNTLIEPLPLIDRINLNSNL-DLNPNPLYAEEGEQEEEEEEEEDREVDVDLHIGLPG 93

Query: 73  YSHSSNNP---------------SAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKT 117
           +   SN+                + KG  N  + K YWIP PEQILIGFTHFSCHVCFKT
Sbjct: 94  FGKPSNDAKQLKKRNGKEIATYDAGKGIENELSGKAYWIPAPEQILIGFTHFSCHVCFKT 153

Query: 118 FNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDF 177
           FNRYNNLQMHMWGHGSQYRKGPESLKGTQPRA+LGIPCYCC EGC+N+I+HP++KPLKDF
Sbjct: 154 FNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNNIDHPRSKPLKDF 213

Query: 178 RTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHI 237
           RTLQTHYKRKHG KPF CR CGK LAVKGDWRTHEKNCGKRW+CVCGSDFKHKRSLKDH+
Sbjct: 214 RTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKRWVCVCGSDFKHKRSLKDHV 273

Query: 238 KAFGSGHGPF 247
           KAFGSGHGP+
Sbjct: 274 KAFGSGHGPY 283

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45935009|gb|AAS79539.1| At1g34790 [Arabidopsis thaliana] gi|46367448|emb|CAG25850.1| hypothetical protein [Arabidopsis thaliana]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 168/249 (67%), Positives = 184/249 (73%), Gaps = 19/249 (7%)

Query: 17  SSTNHIQIEPLNLFPRVTYNSNGGSTEPQP---SLNQNRRARNEEKDDVAVALHIGLPNY 73
           S  N+  IEPL L  R+  NSN     P P      +      EE  +V V LHIGLP +
Sbjct: 35  SCINNTLIEPLPLIDRINLNSNL-DLNPNPLYAEEGEQEEEEEEEDREVDVDLHIGLPGF 93

Query: 74  SHSSNNP---------------SAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTF 118
              SN+                + KG  N  + K YWIP PEQILIGFTHFSCHVCFKTF
Sbjct: 94  GKPSNDAKQLKKRNGKEIATYDAGKGIENELSGKAYWIPAPEQILIGFTHFSCHVCFKTF 153

Query: 119 NRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFR 178
           NRYNNLQMHMWGHGSQYRKGPESLKGTQPRA+LGIPCYCC EGC+N I+HP++KPLKDFR
Sbjct: 154 NRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFR 213

Query: 179 TLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIK 238
           TLQTHYKRKHG KPF CR CGK LAVKGDWRTHEKNCGKRW+CVCGSDFKHKRSLKDH+K
Sbjct: 214 TLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKRWVCVCGSDFKHKRSLKDHVK 273

Query: 239 AFGSGHGPF 247
           AFGSGHGP+
Sbjct: 274 AFGSGHGPY 282

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693123|ref|NP_174737.2| protein TRANSPARENT TESTA 1 [Arabidopsis thaliana] gi|27151706|sp|Q8VWG3.1|TT1_ARATH RecName: Full=Protein TRANSPARENT TESTA 1; AltName: Full=TTL1; AltName: Full=Zinc finger protein TT1 gi|18253279|gb|AAL66405.1|AF190297_1 transparent testa 1 [Arabidopsis thaliana] gi|18253281|gb|AAL66406.1|AF190298_1 transparent testa 1 [Arabidopsis thaliana] gi|225898002|dbj|BAH30333.1| hypothetical protein [Arabidopsis thaliana] gi|332193619|gb|AEE31740.1| protein TRANSPARENT TESTA 1 [Arabidopsis thaliana]

 Score =  337 bits (863), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 169/250 (67%), Positives = 184/250 (73%), Gaps = 20/250 (8%)

Query: 17  SSTNHIQIEPLNLFPRVTYNSNGGSTEPQP----SLNQNRRARNEEKDDVAVALHIGLPN 72
           S  N+  IEPL L  R+  NSN     P P       Q      EE  +V V LHIGLP 
Sbjct: 35  SCINNTLIEPLPLIDRINLNSNL-DLNPNPLYAEEGEQEEEEEEEEDREVDVDLHIGLPG 93

Query: 73  YSHSSNNP---------------SAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKT 117
           +   SN+                + KG  N  + K YWIP PEQILIGFTHFSCHVCFKT
Sbjct: 94  FGKPSNDAKQLKKRNGKEIATYDAGKGIENELSGKAYWIPAPEQILIGFTHFSCHVCFKT 153

Query: 118 FNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDF 177
           FNRYNNLQMHMWGHGSQYRKGPESLKGTQPRA+LGIPCYCC EGC+N I+HP++KPLKDF
Sbjct: 154 FNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDF 213

Query: 178 RTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHI 237
           RTLQTHYKRKHG KPF CR CGK LAVKGDWRTHEKNCGKRW+CVCGSDFKHKRSLKDH+
Sbjct: 214 RTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKRWVCVCGSDFKHKRSLKDHV 273

Query: 238 KAFGSGHGPF 247
           KAFGSGHGP+
Sbjct: 274 KAFGSGHGPY 283

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846556|ref|XP_002891159.1| At1g34790 [Arabidopsis lyrata subsp. lyrata] gi|297337001|gb|EFH67418.1| At1g34790 [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 164/242 (67%), Positives = 180/242 (74%), Gaps = 19/242 (7%)

Query: 24  IEPLNLFPRVTYNSNGGSTEPQP---SLNQNRRARNEEKDDVAVALHIGLPNYSHSSNNP 80
           IEPL L  R+  NSN     P+P      +      EE  +V V LHIGLP +  SS+  
Sbjct: 41  IEPLPLIDRINLNSNL-DLNPKPLYAEEGEQEEEEEEEDGEVDVNLHIGLPGFGKSSDGA 99

Query: 81  ---------------SAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQ 125
                          + K   N  + K YWIP PEQILIGFTHFSCHVCFKTFNRYNNLQ
Sbjct: 100 KELKKKNGKEIATYDAGKDIENEVSGKAYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQ 159

Query: 126 MHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYK 185
           MHMWGHGSQYRKGPESLKGTQPRA+LGIPCYCC EGC+N I+HP++KPLKDFRTLQTHYK
Sbjct: 160 MHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYK 219

Query: 186 RKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHG 245
           RKHG KPF CR CGK LAVKGDWRTHEKNCGKRW+CVCGSDFKHKRSLKDH+KAFG GHG
Sbjct: 220 RKHGHKPFSCRICGKLLAVKGDWRTHEKNCGKRWVCVCGSDFKHKRSLKDHVKAFGPGHG 279

Query: 246 PF 247
           P+
Sbjct: 280 PY 281

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552896|ref|XP_003544798.1| PREDICTED: protein TRANSPARENT TESTA 1 [Glycine max]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/241 (67%), Positives = 184/241 (76%), Gaps = 12/241 (4%)

Query: 20  NHIQIEPLNLFPRVTYNSNGGSTEPQPSL----NQNRRARNEEKDDVAVALHIGLPNYSH 75
           N  Q++PL L       S+   + P+ SL    N+N  A + + +DV VALHIGLP++S 
Sbjct: 15  NQNQLQPLPLL------SSFLGSSPEESLLQNQNENPNACHAQVEDVTVALHIGLPDHSS 68

Query: 76  SSNNPSAKG--NANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGS 133
            SN+ +  G  NA       YWIPT EQILIGF+HFSC VC KTFNRYNNLQMHMWGHGS
Sbjct: 69  GSNSTNNHGFVNATTQVPNNYWIPTQEQILIGFSHFSCPVCHKTFNRYNNLQMHMWGHGS 128

Query: 134 QYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPF 193
           QYR+GP+SLK T PR +L +PCYCCA GCKN+I H +AKPLKDFRTLQTHYKRKHG KPF
Sbjct: 129 QYRRGPDSLKRTHPRPLLDLPCYCCARGCKNNIEHARAKPLKDFRTLQTHYKRKHGSKPF 188

Query: 194 MCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDG 253
            CRKCGK LAVKGDWRTHEKNCGKRWLC+CGSDFKHKRSLKDHIKAFG GH PFS   DG
Sbjct: 189 TCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFSSFSDG 248

Query: 254 V 254
           +
Sbjct: 249 M 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547927|ref|XP_003542356.1| PREDICTED: protein TRANSPARENT TESTA 1-like, partial [Glycine max]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/240 (67%), Positives = 179/240 (74%), Gaps = 9/240 (3%)

Query: 20  NHIQIEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNE---EKDDVAVALHIGLPNYSHS 76
           N  Q++PL L         G S E     NQN    N    + +DV VALHIGLP++S  
Sbjct: 5   NQNQLQPLPLLSSFL----GSSHEESLLQNQNENPNNACHGQVEDVTVALHIGLPDHSSG 60

Query: 77  SNNPSAKG--NANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ 134
           SN+ +  G  NA       YWIPT EQILIGF+HFSC VC KTFNRYNNLQMHMWGHGSQ
Sbjct: 61  SNSTNNHGFVNATTQVPNNYWIPTQEQILIGFSHFSCPVCHKTFNRYNNLQMHMWGHGSQ 120

Query: 135 YRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFM 194
           YR+GP+SLK T PR +L +PCYCCA GCKN+I H +AKPLKDFRTLQTHYKRKHG KPF 
Sbjct: 121 YRRGPDSLKRTHPRPLLDLPCYCCARGCKNNIEHARAKPLKDFRTLQTHYKRKHGSKPFT 180

Query: 195 CRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGV 254
           CRKCGK LAVKGDWRTHEKNCGKRWLC+CGSDFKHKRSLKDHIKAFG GH PFS   DG+
Sbjct: 181 CRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFSSSSDGM 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18376601|emb|CAC86165.1| WIP1 protein [Glycine max]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/241 (67%), Positives = 184/241 (76%), Gaps = 12/241 (4%)

Query: 20  NHIQIEPLNLFPRVTYNSNGGSTEPQPSL----NQNRRARNEEKDDVAVALHIGLPNYSH 75
           N  Q++PL L       S+   + P+ SL    N+N  A + + +DV VALHIGLP++S 
Sbjct: 8   NQNQLQPLPLL------SSFLGSSPEESLLQNQNENPNACHAQVEDVTVALHIGLPDHSS 61

Query: 76  SSNNPSAKG--NANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGS 133
            SN+ +  G  NA       YWIPT EQILIGF+HFSC VC KTFNRYNNLQMHMWGHGS
Sbjct: 62  GSNSTNNHGFVNATTQVPNNYWIPTQEQILIGFSHFSCPVCHKTFNRYNNLQMHMWGHGS 121

Query: 134 QYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPF 193
           QYR+GP+SLK T PR +L +PCYCCA GCKN+I H +AKPLKDFRTLQTHYKRKHG KPF
Sbjct: 122 QYRRGPDSLKRTHPRPLLDLPCYCCARGCKNNIEHARAKPLKDFRTLQTHYKRKHGSKPF 181

Query: 194 MCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDG 253
            CRKCGK LAVKGDWRTHEKNCGKRWLC+CGSDFKHKRSLKDHIKAFG GH PFS   DG
Sbjct: 182 TCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHTPFSSFSDG 241

Query: 254 V 254
           +
Sbjct: 242 M 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2008386	303	TT1 "transparent testa 1" [Ara	0.830	0.729	0.677	3.2e-88
TAIR|locus:2076641	383	NTT "AT3G57670" [Arabidopsis t	0.639	0.443	0.773	1.1e-82
TAIR|locus:2200003	337	WIP3 "AT1G08290" [Arabidopsis	0.616	0.486	0.759	9.5e-78
TAIR|locus:2008281	337	WIP5 "AT1G51220" [Arabidopsis	0.642	0.507	0.734	1.2e-77
TAIR|locus:2091931	412	WIP4 "AT3G20880" [Arabidopsis	0.898	0.580	0.564	1.5e-74
TAIR|locus:2205334	302	DOT5 "DEFECTIVELY ORGANIZED TR	0.883	0.778	0.579	6.5e-74
TAIR|locus:2036303	499	STOP1 "AT1G34370" [Arabidopsis	0.590	0.314	0.421	2.7e-28
UNIPROTKB|Q943I6	522	LOC_Os01g65080 "Zinc finger pr	0.578	0.295	0.401	8.9e-27
UNIPROTKB|Q2QX40	465	STAR3 "Zinc finger protein STA	0.650	0.372	0.376	1.1e-24
TAIR|locus:2172701	373	AT5G22890 [Arabidopsis thalian	0.646	0.461	0.349	2.6e-24

TAIR|locus:2008386 TT1 "transparent testa 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 3.2e-88, P = 3.2e-88
 Identities = 162/239 (67%), Positives = 178/239 (74%)

Query:    24 IEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNEEKDDVAVALHIGLPNYSHSSNNP--- 80
             I+ +NL   +  N N    E      Q      EE  +V V LHIGLP +   SN+    
Sbjct:    48 IDRINLNSNLDLNPNPLYAEEG---EQEEEEEEEEDREVDVDLHIGLPGFGKPSNDAKQL 104

Query:    81 ------------SAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHM 128
                         + KG  N  + K YWIP PEQILIGFTHFSCHVCFKTFNRYNNLQMHM
Sbjct:   105 KKRNGKEIATYDAGKGIENELSGKAYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHM 164

Query:   129 WGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKH 188
             WGHGSQYRKGPESLKGTQPRA+LGIPCYCC EGC+N I+HP++KPLKDFRTLQTHYKRKH
Sbjct:   165 WGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKH 224

Query:   189 GLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPF 247
             G KPF CR CGK LAVKGDWRTHEKNCGKRW+CVCGSDFKHKRSLKDH+KAFGSGHGP+
Sbjct:   225 GHKPFSCRLCGKLLAVKGDWRTHEKNCGKRWVCVCGSDFKHKRSLKDHVKAFGSGHGPY 283

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009813 "flavonoid biosynthetic process" evidence=IMP

TAIR|locus:2076641 NTT "AT3G57670" [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 1.1e-82, Sum P(2) = 1.1e-82
 Identities = 133/172 (77%), Positives = 150/172 (87%)

Query:    93 QYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILG 152
             QYWIPTP QILIG T FSC VCFKTFNRYNN+QMHMWGHGSQYRKGPESL+GTQP  +L 
Sbjct:   201 QYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLR 260

Query:   153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHE 212
             +PCYCCA GC+N+I+HP+AKPLKDFRTLQTHYKRKHG+KPFMCRKCGK  AV+GDWRTHE
Sbjct:   261 LPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHE 320

Query:   213 KNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASSSL 264
             KNCGK W C+CGSDFKHKRSLKDHIKAFG+GHG +    DG +  D+ +S +
Sbjct:   321 KNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAYG--IDGFDEEDEPASEV 370

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0010500 "transmitting tissue development" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

TAIR|locus:2200003 WIP3 "AT1G08290" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
 Identities = 126/166 (75%), Positives = 142/166 (85%)

Query:    92 KQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGT-QPRAI 150
             K++WIP+P QI +G   F+C +C KTFNRYNN+QMHMWGHGS++RKG +SLKGT QP AI
Sbjct:   163 KRFWIPSPAQIHVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGADSLKGTIQPAAI 222

Query:   151 LGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRT 210
             L +PCYCCAEGCKN+INHP++KPLKDFRTLQTHYKRKHG KPF C KCGK LAVKGDWRT
Sbjct:   223 LRLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCGKALAVKGDWRT 282

Query:   211 HEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPF-SRPFDGVE 255
             HEKNCGK W C CGSDFKHKRSLKDHI++FGSGH P  S  FDG E
Sbjct:   283 HEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGSGHSPHPSLLFDGFE 328

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2008281 WIP5 "AT1G51220" [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
 Identities = 127/173 (73%), Positives = 143/173 (82%)

Query:    74 SHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGS 133
             SH  ++    G+ +      YWIPTP QILIG T F+C +CFKTFNRYNN+QMHMWGHGS
Sbjct:   145 SHLDDDDDHHGDLH--RGHHYWIPTPSQILIGPTQFTCPLCFKTFNRYNNMQMHMWGHGS 202

Query:   134 QYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPF 193
             QYRKGPESL+GTQP  +L +PC+CCA GCKN+I+HP+AKPLKDFRTLQTHYKRKHG KPF
Sbjct:   203 QYRKGPESLRGTQPTGMLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPF 262

Query:   194 MCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGP 246
              CR CGK  AVKGDWRTHEKNCGK W C CGSDFKHKRSLKDH+KAFG+GH P
Sbjct:   263 ACRMCGKAFAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGNGHVP 315

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2091931 WIP4 "AT3G20880" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 140/248 (56%), Positives = 169/248 (68%)

Query:     1 METQNLSCHSSNVFAIS-STNHIQIEPLNL-FPRVTYNSNGGSTEPQPSLNQNRRARNEE 58
             MET   S +S+ +     S  H     L+L  P +    +GGS+     L+         
Sbjct:   153 METTETSSNSNFLDQCQDSYRHDVTVDLHLGLPNL---GDGGSSSSDVVLDSTDHQEGHH 209

Query:    59 KDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTF 118
                    L + + +     +    +GN        +WIPTP QIL+G T FSC +CFKTF
Sbjct:   210 DHHQDQGLEVTMASDHDDEHGGLQRGNH----LHHFWIPTPSQILMGPTQFSCPLCFKTF 265

Query:   119 NRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFR 178
             NRYNN+QMHMWGHGSQYRKGPESL+GTQP A+L +PCYCCA GCKN+I+HP+A+PLKDFR
Sbjct:   266 NRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCAPGCKNNIDHPRARPLKDFR 325

Query:   179 TLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIK 238
             TLQTHYKRKHG++PF CR+CGK  AVKGDWRTHEKNCGK W C CGSDFKHKRSLKDH+K
Sbjct:   326 TLQTHYKRKHGVRPFACRRCGKAFAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHVK 385

Query:   239 AFGSGHGP 246
             AFG+GH P
Sbjct:   386 AFGNGHVP 393

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2205334 DOT5 "DEFECTIVELY ORGANIZED TRIBUTARIES 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 138/238 (57%), Positives = 166/238 (69%)

Query:     9 HSSNVFAISSTNHIQIEPLNLFPRVTYNSNGGSTEPQPSLNQNRRARNEEKDDVAVALHI 68
             +++N ++ S      +  L   P   Y S+   T  +PS +          + V VALHI
Sbjct:     2 YNNNQYSFSGDEDSVVLSLGP-PGQQYPSHNKPTSTKPSSDHEFNHPLTNPNGVTVALHI 60

Query:    69 GLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHM 128
             G P+    + +         A   QYWIP+  QIL+G T FSC VC KTFNR+NN+QMHM
Sbjct:    61 GPPSSDKETLSGGNNQEGLTARQGQYWIPSLSQILVGPTQFSCSVCNKTFNRFNNMQMHM 120

Query:   129 WGHGSQYRKGPESLKGTQPRA-ILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRK 187
             WGHGSQYRKGPESL+GT+  + IL +PCYCCAEGCKN+I+HP++KPLKDFRTLQTHYKRK
Sbjct:   121 WGHGSQYRKGPESLRGTKSSSSILRLPCYCCAEGCKNNIDHPRSKPLKDFRTLQTHYKRK 180

Query:   188 HGLKPFMCRK-CGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGH 244
             HG KPF CRK C K  AV+GDWRTHEKNCGK W CVCGSDFKHKRSLKDH++AFG GH
Sbjct:   181 HGAKPFRCRKKCEKTFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGDGH 238

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2036303 STOP1 "AT1G34370" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 2.7e-28, Sum P(2) = 2.7e-28
 Identities = 73/173 (42%), Positives = 94/173 (54%)

Query:   100 EQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKG-----P--ESLKGTQPRAILG 152
             E+IL   THF C +C K F R  NL+MHM GHG +Y+       P  ES+ G++P  I  
Sbjct:   236 EEILAPHTHF-CTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKR 294

Query:   153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCG-KFLAVKGDWRTH 211
               C     GCK +  H K +PLK    ++ HYKR H  K F C +C  K  +V  D +TH
Sbjct:   295 YSCPFL--GCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTH 352

Query:   212 EKNCGK-RWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASSS 263
             EK+CGK +WLC CG+ F  K  L  HI  F  GH P + P +  E    AS+S
Sbjct:   353 EKHCGKNKWLCSCGTTFSRKDKLFGHIALF-QGHTP-AIPLE--ETKPSASTS 401

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0010447 "response to acidity" evidence=IMP

UNIPROTKB|Q943I6 LOC_Os01g65080 "Zinc finger protein STOP1 homolog" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 306 (112.8 bits), Expect = 8.9e-27, P = 8.9e-27
 Identities = 65/162 (40%), Positives = 90/162 (55%)

Query:   100 EQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPC--YC 157
             E+IL   THF C +C K F R  NL+MHM GHG +Y+      K ++  ++   P   Y 
Sbjct:   274 EEILAPHTHF-CLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAPVTRYS 332

Query:   158 CAE-GCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCG-KFLAVKGDWRTHEKNC 215
             C   GCK +  H K +PLK    ++ HYKR H  K + C +C  K  +V  D +THEK+C
Sbjct:   333 CPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHC 392

Query:   216 GK-RWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEV 256
             G+ +WLC CG+ F  K  L  H+  F  GH P + P D ++V
Sbjct:   393 GRDKWLCSCGTTFSRKDKLFGHVALF-QGHTP-ALPMDDIKV 432

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q2QX40 STAR3 "Zinc finger protein STAR3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 285 (105.4 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 70/186 (37%), Positives = 93/186 (50%)

Query:    76 SSNNPSAKGNANVAAAKQ-YWIPTPEQ--ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHG 132
             + +   A+ N   AA ++ Y +   E+  IL   THF C +C K F R  NL+MHM GHG
Sbjct:   194 AGDEQDARENPAAAAEEEKYEVLQLEEDEILAPHTHF-CGICGKGFKRDANLRMHMRGHG 252

Query:   133 SQYRKGPESLKGTQPRAILGIPC-----YCCAE-GCKNSINHPKAKPLKDFRTLQTHYKR 186
              +Y+      K   P      P      Y C   GCK +  H   +PLK    ++ HYKR
Sbjct:   253 DEYKSAAALAKPPPPPEGEEQPPQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKR 312

Query:   187 KHGLKPFMCRKCG-KFLAVKGDWRTHEKNCGK-RWLCVCGSDFKHKRSLKDHIKAFGSGH 244
              H  K  +C +CG K  +V  D +THEK+CG+ RWLC CG+ F  K  L  H+  F  GH
Sbjct:   313 SHCEKRHVCGRCGAKRFSVMADLKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALF-QGH 371

Query:   245 GPFSRP 250
              P   P
Sbjct:   372 APALPP 377

GO:0005634 "nucleus" evidence=IDA

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2172701 AT5G22890 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/183 (34%), Positives = 92/183 (50%)

Query:    73 YSHSSNNPSAKGNANVAAAKQYWIPTPE--QILIGFTHFSCHVCFKTFNRYNNLQMHMWG 130
             Y+  + NP    + +  ++  Y I   +   +L  +TH+ C +C K F R  NL+MHM  
Sbjct:   180 YNTETINPKKDKHRSKPSSGSYDILELDVADLLAKYTHY-CQICGKGFKRDANLRMHMRA 238

Query:   131 HGSQYRKGPESLKGTQPRAILGIPC----YCCAE-GCKNSINHPKAKPLKDFRTLQTHYK 185
             HG +Y+     +  T      G       Y C + GC+ +  H K +PLK     + HYK
Sbjct:   239 HGDEYKTREALISPTSQDKKGGYSLKKHYYSCPQHGCRWNQRHEKFQPLKSVICAKNHYK 298

Query:   186 RKHGLKPFMCRKCG-KFLAVKGDWRTHEKNCGK-RWLCVCGSDFKHKRSLKDHIKAFGSG 243
             R H  K +MCR+C  K  +V  D RTHEK+CG  +W+C CG+ F  K  L  H+  F  G
Sbjct:   299 RSHCPKMYMCRRCSVKHFSVLSDLRTHEKHCGDIKWVCSCGTKFSRKDKLMSHVSLF-LG 357

Query:   244 HGP 246
             H P
Sbjct:   358 HVP 360

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWG3	TT1_ARATH	No assigned EC number	0.676	0.8646	0.7590	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015220001 SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotgun sequence); (273 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.97
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.96
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.93
KOG3608	467	consensus Zn finger proteins [General function pre	99.88
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.81
KOG3608	467	consensus Zn finger proteins [General function pre	99.76
KOG3576	267	consensus Ovo and related transcription factors [T	99.73
KOG3576	267	consensus Ovo and related transcription factors [T	99.62
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.61
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.51
PLN03086	567	PRLI-interacting factor K; Provisional	99.37
PLN03086	567	PRLI-interacting factor K; Provisional	99.32
PHA00733	128	hypothetical protein	99.25
PHA02768	55	hypothetical protein; Provisional	99.17
PHA00733	128	hypothetical protein	99.13
PHA02768	55	hypothetical protein; Provisional	99.11
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.99
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.89
KOG3993	500	consensus Transcription factor (contains Zn finger	98.83
PHA00616	44	hypothetical protein	98.55
PHA00732	79	hypothetical protein	98.48
PHA00732	79	hypothetical protein	98.48
KOG3993	500	consensus Transcription factor (contains Zn finger	98.44
PHA00616	44	hypothetical protein	97.97
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.91
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.88
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.81
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.74
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.71
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.69
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.48
PRK04860	160	hypothetical protein; Provisional	97.35
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.34
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.33
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.3
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.27
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.2
COG5048	467	FOG: Zn-finger [General function prediction only]	97.0
smart00355	26	ZnF_C2H2 zinc finger.	96.62
smart00355	26	ZnF_C2H2 zinc finger.	96.62
PRK04860	160	hypothetical protein; Provisional	96.53
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.35
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.18
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.16
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.93
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.8
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.74
KOG1146	1406	consensus Homeobox protein [General function predi	95.58
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.27
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.73
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.36
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	93.75
COG5048	467	FOG: Zn-finger [General function prediction only]	93.51
KOG2893	341	consensus Zn finger protein [General function pred	93.49
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.47
KOG1146	1406	consensus Homeobox protein [General function predi	93.28
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.01
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.45
KOG2893	341	consensus Zn finger protein [General function pred	92.01
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	90.62
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	90.55
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.76
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	88.9
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	88.08
COG4049	65	Uncharacterized protein containing archaeal-type C	85.92
KOG2186	276	consensus Cell growth-regulating nucleolar protein	85.64
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.29
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	83.07
PF09416	152	UPF1_Zn_bind: RNA helicase (UPF2 interacting domai	80.13

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.97  E-value=7e-31  Score=206.24  Aligned_cols=133  Identities=27%  Similarity=0.453  Sum_probs=121.8

Q ss_pred             CCCCCCCCcccccccccCCCchhhhhhcC---CCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCc
Q 037179           77 SNNPSAKGNANVAAAKQYWIPTPEQILIG---FTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGI  153 (266)
Q Consensus        77 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~  153 (266)
                      ....|.|+.||+.+...++|.+|.++|-.   .+.+.|++|||.|.....|.+|+|+|+                  ...
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~------------------l~c  188 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT------------------LPC  188 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC------------------CCc
Confidence            45669999999999999999999999865   567999999999999999999999995                  228


Q ss_pred             CCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCc
Q 037179          154 PCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHK  230 (266)
Q Consensus       154 ~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~  230 (266)
                      +|.+||            |.|.....|+.|+|+|||||||.|..|+|+|..+++|+.|++||  .|+|+| .|+|+|...
T Consensus       189 ~C~iCG------------KaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~  256 (279)
T KOG2462|consen  189 ECGICG------------KAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALK  256 (279)
T ss_pred             cccccc------------ccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHH
Confidence            899999            99999999999999999999999999999999999999999987  799999 999999999


Q ss_pred             hHHHHHHHh
Q 037179          231 RSLKDHIKA  239 (266)
Q Consensus       231 ~~L~~H~~~  239 (266)
                      +.|.+|...
T Consensus       257 SyLnKH~ES  265 (279)
T KOG2462|consen  257 SYLNKHSES  265 (279)
T ss_pred             HHHHHhhhh
Confidence            999999875

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.96  E-value=3.1e-30  Score=202.62  Aligned_cols=132  Identities=22%  Similarity=0.389  Sum_probs=119.0

Q ss_pred             CCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhh
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYK  185 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~  185 (266)
                      ...|+|..||+.+.+.++|.+|..+|..-        .     ....+.|..|+            |.|.....|..|+|
T Consensus       128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~--------~-----s~ka~~C~~C~------------K~YvSmpALkMHir  182 (279)
T KOG2462|consen  128 HPRYKCPECGKSYSTSSNLSRHKQTHRSL--------D-----SKKAFSCKYCG------------KVYVSMPALKMHIR  182 (279)
T ss_pred             CCceeccccccccccccccchhhcccccc--------c-----ccccccCCCCC------------ceeeehHHHhhHhh
Confidence            44599999999999999999999999531        1     12238999999            99999999999999


Q ss_pred             hhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCccccccccc
Q 037179          186 RKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASS  262 (266)
Q Consensus       186 ~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~~~~  262 (266)
                      +|+  -|++|.+|||.|.+..-|+.|+|+|  ||||.| .|+|+|..+++|+.||++ |.+.|+|+|..|+|+|++++-|
T Consensus       183 TH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQT-HS~~K~~qC~~C~KsFsl~SyL  259 (279)
T KOG2462|consen  183 THT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQT-HSDVKKHQCPRCGKSFALKSYL  259 (279)
T ss_pred             ccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHh-hcCCccccCcchhhHHHHHHHH
Confidence            997  6899999999999999999999964  999999 999999999999999999 8999999999999999998876


Q ss_pred             ccC
Q 037179          263 SLL  265 (266)
Q Consensus       263 ~~~  265 (266)
                      .-|
T Consensus       260 nKH  262 (279)
T KOG2462|consen  260 NKH  262 (279)
T ss_pred             HHh
Confidence            543

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.93  E-value=1.2e-26  Score=205.11  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=52.0

Q ss_pred             CCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           79 NPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        79 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      -.++|.+|.++|...+.|+.|+|.|+|++||+|++||..|+++.+|+.|...|+..|
T Consensus       352 ~khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~e~~  408 (958)
T KOG1074|consen  352 FKHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHREKY  408 (958)
T ss_pred             ccchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeeccccC
Confidence            346899999999999999999999999999999999999999999999987774443

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.88  E-value=3.6e-24  Score=172.93  Aligned_cols=174  Identities=18%  Similarity=0.250  Sum_probs=152.5

Q ss_pred             chhccccCCCccCCCCCCCCCCCcccccccccCCCchhhhhh--cCCCceecccccccccChhhHHhhhhhcCCCCCCCC
Q 037179           62 VAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQIL--IGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGP  139 (266)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  139 (266)
                      +.....+.++.+.|++++...|+.||.-|.....|-.|.+..  ....+|.|..|.|.|.++..|..|++.|-.      
T Consensus       189 ~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn------  262 (467)
T KOG3608|consen  189 MGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN------  262 (467)
T ss_pred             hccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh------
Confidence            334566788888999999999999999999999999998644  456789999999999999999999998842      


Q ss_pred             CCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhh-hhcCCCCeecccccccccchhhHHHHHHHh-CC
Q 037179          140 ESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYK-RKHGLKPFMCRKCGKFLAVKGDWRTHEKNC-GK  217 (266)
Q Consensus       140 ~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~-~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~-~k  217 (266)
                                  .|+|+.|+            -+....+.|..|++ .|...|||+|+.|++.|.+.++|.+|..+| +-
T Consensus       263 ------------~ykCplCd------------mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~  318 (467)
T KOG3608|consen  263 ------------CYKCPLCD------------MTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKT  318 (467)
T ss_pred             ------------cccccccc------------cCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcccc
Confidence                        28999999            56677899999998 688999999999999999999999999998 55


Q ss_pred             CEEe-E--cCccccCchHHHHHHHhhCCCCC--CccCCCCCcccccccccccC
Q 037179          218 RWLC-V--CGSDFKHKRSLKDHIKAFGSGHG--PFSRPFDGVEVLDDASSSLL  265 (266)
Q Consensus       218 ~~~C-~--C~k~F~~~~~L~~H~~~~H~~~~--p~~C~~C~k~f~~~~~~~~~  265 (266)
                      -|+| .  |..+|.+...|.+|++.||.|..  +|.|-.|++.|++..++.-|
T Consensus       319 ~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~H  371 (467)
T KOG3608|consen  319 VYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAH  371 (467)
T ss_pred             ceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHH
Confidence            6999 4  99999999999999999998765  59999999999998887654

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.81  E-value=8.6e-21  Score=168.42  Aligned_cols=112  Identities=21%  Similarity=0.306  Sum_probs=90.7

Q ss_pred             CCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCC
Q 037179           77 SNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCY  156 (266)
Q Consensus        77 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~  156 (266)
                      ...+..|-+|-++...++.|+.|+|+|+|++||+|.+||++|+++.+|+.|+.+|.            .+|.....+.|+
T Consensus       602 ~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHk------------a~p~~R~q~ScP  669 (958)
T KOG1074|consen  602 RTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHK------------AKPPARVQFSCP  669 (958)
T ss_pred             cCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccc------------cCccccccccCC
Confidence            34678999999999999999999999999999999999999999999999999994            223333568899


Q ss_pred             ---CCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCC-CC------------eecccccccccchhhHHHHH
Q 037179          157 ---CCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGL-KP------------FMCRKCGKFLAVKGDWRTHE  212 (266)
Q Consensus       157 ---~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~-kp------------~~C~~C~k~f~~~~~L~~H~  212 (266)
                         +|.            +.|.....|..|+++|++. .+            -+|..|.+.|.....+..++
T Consensus       670 ~~~ic~------------~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~  729 (958)
T KOG1074|consen  670 STFICQ------------KKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQI  729 (958)
T ss_pred             chhhhc------------ccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhh
Confidence               999            7888888888888888732 22            35777777776555555554

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.76  E-value=4.6e-20  Score=149.28  Aligned_cols=155  Identities=15%  Similarity=0.209  Sum_probs=138.7

Q ss_pred             CCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCC
Q 037179           81 SAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAE  160 (266)
Q Consensus        81 ~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~  160 (266)
                      ..+..|-+.|..++.|.+|.+.|+++|...|+.||.-|.++..|..|.+..+.-              ....|.|..|. 
T Consensus       180 C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l--------------~~n~fqC~~C~-  244 (467)
T KOG3608|consen  180 CNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTEL--------------NTNSFQCAQCF-  244 (467)
T ss_pred             ccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhh--------------cCCchHHHHHH-
Confidence            345689999999999999999999999999999999999999999999876421              11139999999 


Q ss_pred             CccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHH-h--CCCEEe-EcCccccCchHHHHH
Q 037179          161 GCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN-C--GKRWLC-VCGSDFKHKRSLKDH  236 (266)
Q Consensus       161 ~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~-~--~k~~~C-~C~k~F~~~~~L~~H  236 (266)
                                 |.|.+...|..|++.|..  -|+|+.|+.+....+.|..|++. |  .|||+| .|++.|.+.+.|.+|
T Consensus       245 -----------KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH  311 (467)
T KOG3608|consen  245 -----------KRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKH  311 (467)
T ss_pred             -----------HHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHH
Confidence                       999999999999999975  59999999999999999999995 3  899999 999999999999999


Q ss_pred             HHhhCCCCCCccCCC--CCcccccccccccC
Q 037179          237 IKAFGSGHGPFSRPF--DGVEVLDDASSSLL  265 (266)
Q Consensus       237 ~~~~H~~~~p~~C~~--C~k~f~~~~~~~~~  265 (266)
                      ..+ |+ +..|.|+.  |..+|.+...|+.|
T Consensus       312 ~~~-HS-~~~y~C~h~~C~~s~r~~~q~~~H  340 (467)
T KOG3608|consen  312 VQV-HS-KTVYQCEHPDCHYSVRTYTQMRRH  340 (467)
T ss_pred             HHh-cc-ccceecCCCCCcHHHHHHHHHHHH
Confidence            997 67 77899999  99999998887654

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.73  E-value=1.3e-17  Score=125.41  Aligned_cols=111  Identities=25%  Similarity=0.464  Sum_probs=97.2

Q ss_pred             CCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHh
Q 037179          105 GFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHY  184 (266)
Q Consensus       105 ~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~  184 (266)
                      +...|.|.+|+|.|....-|++|++-|..-                ..+-|..||            |.|.+.-.|++|+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~v----------------kr~lct~cg------------kgfndtfdlkrh~  165 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDV----------------KRHLCTFCG------------KGFNDTFDLKRHT  165 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHH----------------HHHHHhhcc------------Ccccchhhhhhhh
Confidence            345689999999999999999999999433                338899999            7888888999999


Q ss_pred             hhhcCCCCeecccccccccchhhHHHHHHH-h------------CCCEEe-EcCccccCchHHHHHHHhhCCC
Q 037179          185 KRKHGLKPFMCRKCGKFLAVKGDWRTHEKN-C------------GKRWLC-VCGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       185 ~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~-~------------~k~~~C-~C~k~F~~~~~L~~H~~~~H~~  243 (266)
                      |+|+|.+||+|..|+|+|.+.-.|..|.+. |            .|.|.| .||.+-.....+..|++.||..
T Consensus       166 rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~  238 (267)
T KOG3576|consen  166 RTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF  238 (267)
T ss_pred             ccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence            999999999999999999999999999872 2            578999 9999999999999999997654

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.62  E-value=2.4e-16  Score=118.63  Aligned_cols=114  Identities=22%  Similarity=0.297  Sum_probs=102.0

Q ss_pred             CCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCc
Q 037179           74 SHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGI  153 (266)
Q Consensus        74 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~  153 (266)
                      ...+...+.|.+|+|.|.....|.+|++.|...+.|-|..||+.|...-.|++|+|+|+|-.+                |
T Consensus       111 sssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrp----------------y  174 (267)
T KOG3576|consen  111 SSSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP----------------Y  174 (267)
T ss_pred             CCCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccc----------------c
Confidence            344567799999999999999999999999999999999999999999999999999976443                9


Q ss_pred             CCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcC-----------CCCeecccccccccchhhHHHHHHHh
Q 037179          154 PCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHG-----------LKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       154 ~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~-----------~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      +|..|+            |.|.+...|..|.+.-+|           +|-|.|..||.+-.....+..|++.+
T Consensus       175 kc~~c~------------kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~  235 (267)
T KOG3576|consen  175 KCSLCE------------KAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLH  235 (267)
T ss_pred             chhhhh------------HHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhc
Confidence            999999            999999999999876544           46799999999999999999999865

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.61  E-value=1.7e-16  Score=139.41  Aligned_cols=101  Identities=28%  Similarity=0.514  Sum_probs=89.5

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhc--CCCCeecccccccccchhhHHHHHHHh---------------
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKH--GLKPFMCRKCGKFLAVKGDWRTHEKNC---------------  215 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~--~~kp~~C~~C~k~f~~~~~L~~H~~~~---------------  215 (266)
                      ..|..|.            +.+.....|+.|++..+  .+--|.|..|..+|.+...|.+|+.+|               
T Consensus       211 ltcpycd------------rgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~  278 (1007)
T KOG3623|consen  211 LTCPYCD------------RGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSAL  278 (1007)
T ss_pred             hcchhHH------------HHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhh
Confidence            6799999            77888899999988543  345699999999999999999999965               


Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCcccccccccccCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASSSLLV  266 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~~~~~~~~  266 (266)
                      .+.|+| .|||+|..+..|+.|+|+ |.|||||.|+.|+|+|....+-+.||
T Consensus       279 lRKFKCtECgKAFKfKHHLKEHlRI-HSGEKPfeCpnCkKRFSHSGSySSHm  329 (1007)
T KOG3623|consen  279 LRKFKCTECGKAFKFKHHLKEHLRI-HSGEKPFECPNCKKRFSHSGSYSSHM  329 (1007)
T ss_pred             hccccccccchhhhhHHHHHhhhee-ecCCCCcCCcccccccccCCcccccc
Confidence            267999 999999999999999999 89999999999999999988877765

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.51  E-value=2e-15  Score=132.78  Aligned_cols=120  Identities=23%  Similarity=0.324  Sum_probs=96.4

Q ss_pred             CCCCCCcccccccccCCCchhhhhhc--CCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCC
Q 037179           79 NPSAKGNANVAAAKQYWIPTPEQILI--GFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCY  156 (266)
Q Consensus        79 ~~~~C~~C~~~f~~~~~l~~H~~~h~--~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~  156 (266)
                      ....|+.|.+.+.....|+.|++.-.  .+..|.|..|..+|..+..|.+|+.+|.....   .............|+|.
T Consensus       209 qlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~d---qa~sltqsa~lRKFKCt  285 (1007)
T KOG3623|consen  209 QLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGD---QAISLTQSALLRKFKCT  285 (1007)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCc---ccccccchhhhcccccc
Confidence            34689999999999999999986533  34569999999999999999999999943211   11111122334569999


Q ss_pred             CCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHH
Q 037179          157 CCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       157 ~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      .|+            |+|..+-.|+.|+|+|.|||||.|..|+|.|.....+-.|+.
T Consensus       286 ECg------------KAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  286 ECG------------KAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccc------------hhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            999            899999999999999999999999999999999998888886

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.37  E-value=9.3e-13  Score=116.36  Aligned_cols=133  Identities=20%  Similarity=0.325  Sum_probs=97.4

Q ss_pred             CCCCcccccccccCCCchhhhhhcCCCceeccc--ccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCC
Q 037179           81 SAKGNANVAAAKQYWIPTPEQILIGFTHFSCHV--CFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCC  158 (266)
Q Consensus        81 ~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C  158 (266)
                      -.|+.|....... .|..|.... .-..-.|+.  |+..|. +..+..|                         +.|..|
T Consensus       408 V~C~NC~~~i~l~-~l~lHe~~C-~r~~V~Cp~~~Cg~v~~-r~el~~H-------------------------~~C~~C  459 (567)
T PLN03086        408 VECRNCKHYIPSR-SIALHEAYC-SRHNVVCPHDGCGIVLR-VEEAKNH-------------------------VHCEKC  459 (567)
T ss_pred             EECCCCCCccchh-HHHHHHhhC-CCcceeCCcccccceee-ccccccC-------------------------ccCCCC
Confidence            4688888776653 344555322 122235764  888772 2333333                         569999


Q ss_pred             CCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccC------
Q 037179          159 AEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKH------  229 (266)
Q Consensus       159 ~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~------  229 (266)
                      +            +.|. ...|..|+.+|+  +|+.|. ||+.+ ....|..|+.++  ++|+.| .|++.|..      
T Consensus       460 g------------k~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d  522 (567)
T PLN03086        460 G------------QAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMD  522 (567)
T ss_pred             C------------Cccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccc
Confidence            9            7775 578999999985  789999 99755 668999999875  899999 99999952      


Q ss_pred             ----chHHHHHHHhhCCCCCCccCCCCCccccccc
Q 037179          230 ----KRSLKDHIKAFGSGHGPFSRPFDGVEVLDDA  260 (266)
Q Consensus       230 ----~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~~  260 (266)
                          .+.|..|+.+ + |.+++.|..||+.|..+.
T Consensus       523 ~~d~~s~Lt~HE~~-C-G~rt~~C~~Cgk~Vrlrd  555 (567)
T PLN03086        523 VRDRLRGMSEHESI-C-GSRTAPCDSCGRSVMLKE  555 (567)
T ss_pred             hhhhhhhHHHHHHh-c-CCcceEccccCCeeeehh
Confidence                4589999997 3 999999999999987654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.32  E-value=5.7e-12  Score=111.46  Aligned_cols=120  Identities=19%  Similarity=0.338  Sum_probs=96.8

Q ss_pred             CCCCCc--ccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCC
Q 037179           80 PSAKGN--ANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYC  157 (266)
Q Consensus        80 ~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~  157 (266)
                      .-.|+.  |+..|.. ..+..|         +.|+.|++.|. ...|..|+.+|+.                  .+.|. 
T Consensus       433 ~V~Cp~~~Cg~v~~r-~el~~H---------~~C~~Cgk~f~-~s~LekH~~~~Hk------------------pv~Cp-  482 (567)
T PLN03086        433 NVVCPHDGCGIVLRV-EEAKNH---------VHCEKCGQAFQ-QGEMEKHMKVFHE------------------PLQCP-  482 (567)
T ss_pred             ceeCCcccccceeec-cccccC---------ccCCCCCCccc-hHHHHHHHHhcCC------------------CccCC-
Confidence            346874  9998843 344555         58999999996 6889999998752                  18898 


Q ss_pred             CCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeeccccccccc----------chhhHHHHHHHh-CCCEEe-EcCc
Q 037179          158 CAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLA----------VKGDWRTHEKNC-GKRWLC-VCGS  225 (266)
Q Consensus       158 C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~----------~~~~L~~H~~~~-~k~~~C-~C~k  225 (266)
                      |+            +.+ .+..|..|+.+|.+.+|+.|..|++.|.          ..+.|..|+.++ .+++.| .||+
T Consensus       483 Cg------------~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk  549 (567)
T PLN03086        483 CG------------VVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGR  549 (567)
T ss_pred             CC------------CCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCC
Confidence            98            545 5689999999999999999999999995          245899999975 899999 9999


Q ss_pred             cccCchHHHHHHHhhCCC
Q 037179          226 DFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       226 ~F~~~~~L~~H~~~~H~~  243 (266)
                      .|..+ .|..|+..+|..
T Consensus       550 ~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        550 SVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             eeeeh-hHHHHHHHhhcC
Confidence            99776 588998887753

>PHA00733 hypothetical protein

Probab=99.25  E-value=4e-12  Score=92.32  Aligned_cols=64  Identities=22%  Similarity=0.439  Sum_probs=53.6

Q ss_pred             hhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHhCCCEEe-EcCccccCchHHHHHHHhhCC
Q 037179          178 RTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLC-VCGSDFKHKRSLKDHIKAFGS  242 (266)
Q Consensus       178 ~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~~k~~~C-~C~k~F~~~~~L~~H~~~~H~  242 (266)
                      +.|.+|+..+ +++||.|..||+.|.....|..|++.++.+|.| .|++.|.....|..|+...|.
T Consensus        60 ~~l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         60 SYLYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HHHHhhcccC-CCCCccCCCCCCcCCCHHHHHHHHhcCCcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            3455565444 478999999999999999999999987788999 999999999999999988664

>PHA02768 hypothetical protein; Provisional

Probab=99.17  E-value=1.4e-11  Score=73.99  Aligned_cols=42  Identities=14%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             CEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCccccccccc
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASS  262 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~~~~  262 (266)
                      .|+| .||+.|.+.++|..|+++ |+  +||+|..|++.|.+.+.+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~-H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK-HN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh-cC--CcccCCcccceeccccee
Confidence            4778 888888888888888888 55  688888888888877654

>PHA00733 hypothetical protein

Probab=99.13  E-value=9.1e-12  Score=90.45  Aligned_cols=87  Identities=16%  Similarity=0.137  Sum_probs=69.7

Q ss_pred             ChhhHHHHhhhhcCCCCeecccccccccchhhHHHH--HH----H-hCCCEEe-EcCccccCchHHHHHHHhhCCCCCCc
Q 037179          176 DFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTH--EK----N-CGKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPF  247 (266)
Q Consensus       176 ~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H--~~----~-~~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~  247 (266)
                      +...|..+-..-...+++.|.+|++.|.....|..|  ++    + .++||.| .||+.|.....|..|+++ |  +.+|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~-h--~~~~  100 (128)
T PHA00733         24 TLEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRY-T--EHSK  100 (128)
T ss_pred             CHHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhc-C--CcCc
Confidence            345555554444457889999999999888777766  22    2 3789999 999999999999999997 4  4689


Q ss_pred             cCCCCCcccccccccccC
Q 037179          248 SRPFDGVEVLDDASSSLL  265 (266)
Q Consensus       248 ~C~~C~k~f~~~~~~~~~  265 (266)
                      .|++|++.|.+..++..|
T Consensus       101 ~C~~CgK~F~~~~sL~~H  118 (128)
T PHA00733        101 VCPVCGKEFRNTDSTLDH  118 (128)
T ss_pred             cCCCCCCccCCHHHHHHH
Confidence            999999999999888765

>PHA02768 hypothetical protein; Provisional

Probab=99.11  E-value=2.6e-11  Score=72.75  Aligned_cols=43  Identities=16%  Similarity=0.470  Sum_probs=27.5

Q ss_pred             CcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhH
Q 037179          152 GIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDW  208 (266)
Q Consensus       152 ~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L  208 (266)
                      +|+|+.||            +.|...++|..|+++|+  +||+|..|++.|.+.+.|
T Consensus         5 ~y~C~~CG------------K~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICG------------EIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhC------------CeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            36666666            66666666666666666  566666666666655544

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.99  E-value=1.7e-10  Score=59.34  Aligned_cols=26  Identities=23%  Similarity=0.648  Sum_probs=24.0

Q ss_pred             HHHHHHHhhCCCCCCccCCCCCccccc
Q 037179          232 SLKDHIKAFGSGHGPFSRPFDGVEVLD  258 (266)
Q Consensus       232 ~L~~H~~~~H~~~~p~~C~~C~k~f~~  258 (266)
                      +|.+|+++ |+|++||.|++|+++|.+
T Consensus         1 ~l~~H~~~-H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRT-HTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHH-HSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhh-cCCCCCCCCCCCcCeeCc
Confidence            58999998 899999999999999974

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.89  E-value=9.7e-10  Score=56.50  Aligned_cols=26  Identities=35%  Similarity=0.777  Sum_probs=23.8

Q ss_pred             hHHHHhhhhcCCCCeecccccccccc
Q 037179          179 TLQTHYKRKHGLKPFMCRKCGKFLAV  204 (266)
Q Consensus       179 ~l~~H~~~h~~~kp~~C~~C~k~f~~  204 (266)
                      +|.+|+++|+|+|||.|++|+++|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999964

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.83  E-value=4.2e-10  Score=94.08  Aligned_cols=54  Identities=17%  Similarity=0.130  Sum_probs=46.3

Q ss_pred             CCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcC
Q 037179           79 NPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus        79 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      .-|.|..|...|...+.|.+|.-.-+-...|+|++|+|.|+-..+|..|.|-|.
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHK  319 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccC
Confidence            348999999999999999999743333345999999999999999999999883

>PHA00616 hypothetical protein

Probab=98.55  E-value=2e-08  Score=57.39  Aligned_cols=38  Identities=16%  Similarity=0.404  Sum_probs=32.2

Q ss_pred             CEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCccc
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEV  256 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f  256 (266)
                      ||+| .||+.|.+++.|.+|++. |+|++|+.|+.=-..|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~-~hg~~~~~~~~~y~~f   39 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS-VHKQNKLTLEYFYIYF   39 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH-hcCCCccceeEEEEEE
Confidence            6899 999999999999999998 7899999988644333

>PHA00732 hypothetical protein

Probab=98.48  E-value=6.5e-08  Score=63.81  Aligned_cols=29  Identities=21%  Similarity=0.288  Sum_probs=13.7

Q ss_pred             CCCCChhhHHHHhhh-hcCCCCeeccccccccc
Q 037179          172 KPLKDFRTLQTHYKR-KHGLKPFMCRKCGKFLA  203 (266)
Q Consensus       172 k~f~~~~~l~~H~~~-h~~~kp~~C~~C~k~f~  203 (266)
                      +.|.....|..|++. |.   ++.|+.||+.|.
T Consensus         9 k~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~   38 (79)
T PHA00732          9 FTTVTLFALKQHARRNHT---LTKCPVCNKSYR   38 (79)
T ss_pred             CccCCHHHHHHHhhcccC---CCccCCCCCEeC
Confidence            445555555555542 32   234555555554

>PHA00732 hypothetical protein

Probab=98.48  E-value=7.4e-08  Score=63.56  Aligned_cols=45  Identities=22%  Similarity=0.462  Sum_probs=32.4

Q ss_pred             CeecccccccccchhhHHHHHHHhCCCEEe-EcCccccCchHHHHHHHh
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEKNCGKRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~~~~k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      ||.|..||+.|.....|..|++.+..++.| .||+.|.   .|..|+++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTLTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCCCccCCCCCEeC---Chhhhhcc
Confidence            577888888888888888887753345678 7888876   46777765

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.44  E-value=2.7e-08  Score=83.50  Aligned_cols=84  Identities=19%  Similarity=0.401  Sum_probs=68.6

Q ss_pred             CccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHhC----------C
Q 037179          148 RAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCG----------K  217 (266)
Q Consensus       148 ~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~~----------k  217 (266)
                      ...+.|.|..|.            ..|.+.-.|.+|.-.-...--|+|.+|+|+|.-..+|..|.|+|.          .
T Consensus       263 n~iGdyiCqLCK------------~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~  330 (500)
T KOG3993|consen  263 NVIGDYICQLCK------------EKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSP  330 (500)
T ss_pred             ccHHHHHHHHHH------------HhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCC
Confidence            444569999999            667777889999754333345999999999999999999999651          1


Q ss_pred             -------------------------CEEe-EcCccccCchHHHHHHHhhCCC
Q 037179          218 -------------------------RWLC-VCGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       218 -------------------------~~~C-~C~k~F~~~~~L~~H~~~~H~~  243 (266)
                                               -|.| .|+|.|.+...|++|+.+||..
T Consensus       331 P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  331 PPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             ChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence                                     2899 9999999999999999997754

>PHA00616 hypothetical protein

Probab=97.97  E-value=3.2e-06  Score=48.42  Aligned_cols=34  Identities=12%  Similarity=0.236  Sum_probs=27.6

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      |+|..||            +.|...+.|..|++.|+|++++.|+.-
T Consensus         2 YqC~~CG------------~~F~~~s~l~~H~r~~hg~~~~~~~~~   35 (44)
T PHA00616          2 YQCLRCG------------GIFRKKKEVIEHLLSVHKQNKLTLEYF   35 (44)
T ss_pred             Cccchhh------------HHHhhHHHHHHHHHHhcCCCccceeEE
Confidence            7788888            788888888888888888888887653

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.91  E-value=3.1e-06  Score=68.81  Aligned_cols=50  Identities=30%  Similarity=0.543  Sum_probs=37.5

Q ss_pred             CCCCeeccc--ccccccchhhHHHHHHHh---------------------CCCEEe-EcCccccCchHHHHHHH
Q 037179          189 GLKPFMCRK--CGKFLAVKGDWRTHEKNC---------------------GKRWLC-VCGSDFKHKRSLKDHIK  238 (266)
Q Consensus       189 ~~kp~~C~~--C~k~f~~~~~L~~H~~~~---------------------~k~~~C-~C~k~F~~~~~L~~H~~  238 (266)
                      ++|||+|++  |.|.|.....|+.|+.-+                     .|||+| +|+|+|.....|+-|..
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            458888876  888888888888887621                     377777 77777777777777753

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.88  E-value=9.3e-06  Score=40.25  Aligned_cols=21  Identities=38%  Similarity=1.009  Sum_probs=13.3

Q ss_pred             EEe-EcCccccCchHHHHHHHh
Q 037179          219 WLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       219 ~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      |.| .|++.|..+..|..|+++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            456 666666666666666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.81  E-value=1.4e-05  Score=39.54  Aligned_cols=23  Identities=26%  Similarity=0.668  Sum_probs=18.9

Q ss_pred             eecccccccccchhhHHHHHHHh
Q 037179          193 FMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       193 ~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |.|..|++.|..+..|..|+++|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            67888888888888888888753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.74  E-value=2.2e-05  Score=39.15  Aligned_cols=23  Identities=30%  Similarity=0.954  Sum_probs=14.4

Q ss_pred             EEe-EcCccccCchHHHHHHHhhC
Q 037179          219 WLC-VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       219 ~~C-~C~k~F~~~~~L~~H~~~~H  241 (266)
                      |.| .|++.|.+...|..|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            566 77777777777777777654

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.71  E-value=4.3e-05  Score=46.73  Aligned_cols=46  Identities=26%  Similarity=0.533  Sum_probs=22.0

Q ss_pred             eecccccccccchhhHHHHHHH-h---CCCEEe-EcCccccCchHHHHHHHhhC
Q 037179          193 FMCRKCGKFLAVKGDWRTHEKN-C---GKRWLC-VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       193 ~~C~~C~k~f~~~~~L~~H~~~-~---~k~~~C-~C~k~F~~~~~L~~H~~~~H  241 (266)
                      |.|++|++ ......|..|... |   .+.+.| +|...+.  .+|..|+..+|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            45555555 2333445555442 1   234555 5555433  25556655543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.69  E-value=2.2e-05  Score=40.57  Aligned_cols=23  Identities=26%  Similarity=0.730  Sum_probs=17.3

Q ss_pred             CEEe-EcCccccCchHHHHHHHhh
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAF  240 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~  240 (266)
                      ||.| .|++.|.....|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            5777 7777777777777777764

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.48  E-value=5.4e-05  Score=61.76  Aligned_cols=50  Identities=18%  Similarity=0.278  Sum_probs=41.2

Q ss_pred             hCCCEEe---EcCccccCchHHHHHHHhhC------------------CCCCCccCCCCCccccccccccc
Q 037179          215 CGKRWLC---VCGSDFKHKRSLKDHIKAFG------------------SGHGPFSRPFDGVEVLDDASSSL  264 (266)
Q Consensus       215 ~~k~~~C---~C~k~F~~~~~L~~H~~~~H------------------~~~~p~~C~~C~k~f~~~~~~~~  264 (266)
                      .+|||+|   -|.|.|.....|+-|+.--|                  ...|||+|++|+|+|..---|+-
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKY  416 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY  416 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCcccee
Confidence            3699999   49999999999999987434                  13599999999999987666554

>PRK04860 hypothetical protein; Provisional

Probab=97.35  E-value=0.00014  Score=54.79  Aligned_cols=40  Identities=15%  Similarity=0.343  Sum_probs=33.6

Q ss_pred             CEEeEcCccccCchHHHHHHHhhCCCCCCccCCCCCcccccccc
Q 037179          218 RWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDAS  261 (266)
Q Consensus       218 ~~~C~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~~~  261 (266)
                      +|.|.|++   ....+.+|.++ |+|+++|.|..|++.|.....
T Consensus       119 ~Y~C~C~~---~~~~~rrH~ri-~~g~~~YrC~~C~~~l~~~~~  158 (160)
T PRK04860        119 PYRCKCQE---HQLTVRRHNRV-VRGEAVYRCRRCGETLVFKGE  158 (160)
T ss_pred             EEEcCCCC---eeCHHHHHHHH-hcCCccEECCCCCceeEEecc
Confidence            57888877   67788999998 899999999999999876544

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.34  E-value=0.00015  Score=50.26  Aligned_cols=72  Identities=21%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             CCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh-CCCEEe-EcCccccCch
Q 037179          154 PCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC-GKRWLC-VCGSDFKHKR  231 (266)
Q Consensus       154 ~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~-~k~~~C-~C~k~F~~~~  231 (266)
                      +|..|+            ..|.....|..|+...++-..-    ....+.....+..+.+.. ...+.| .|++.|....
T Consensus         1 ~C~~C~------------~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~   64 (100)
T PF12756_consen    1 QCLFCD------------ESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSRE   64 (100)
T ss_dssp             ----------------------------------------------------------------SSEEBSSSS-EESSHH
T ss_pred             Cccccc------------cccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHH
Confidence            488888            7888889999999755443211    122223444444554433 347999 9999999999


Q ss_pred             HHHHHHHhhC
Q 037179          232 SLKDHIKAFG  241 (266)
Q Consensus       232 ~L~~H~~~~H  241 (266)
                      .|..||+.++
T Consensus        65 ~l~~Hm~~~~   74 (100)
T PF12756_consen   65 ALQEHMRSKH   74 (100)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHcCcc
Confidence            9999999753

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.33  E-value=0.00015  Score=37.30  Aligned_cols=25  Identities=36%  Similarity=0.631  Sum_probs=22.5

Q ss_pred             ceecccccccccChhhHHhhhhhcC
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      ||.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5889999999999999999998874

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.30  E-value=0.00017  Score=50.00  Aligned_cols=73  Identities=22%  Similarity=0.315  Sum_probs=20.9

Q ss_pred             ecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcC
Q 037179          110 SCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHG  189 (266)
Q Consensus       110 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~  189 (266)
                      +|..|+..|.....|..|+...++-.                   .. ..            ..+.....+..+.+.-. 
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~-------------------~~-~~------------~~l~~~~~~~~~~~~~~-   47 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFD-------------------IP-DQ------------KYLVDPNRLLNYLRKKV-   47 (100)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cccccccccccccccccccccccccc-------------------cc-cc------------ccccccccccccccccc-
Confidence            48889999999999999986554311                   01 00            11222233333333222 


Q ss_pred             CCCeecccccccccchhhHHHHHHHh
Q 037179          190 LKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       190 ~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      ...+.|..|++.|.....|..|++.+
T Consensus        48 ~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   48 KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            23689999999999999999999953

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.27  E-value=0.00022  Score=35.31  Aligned_cols=23  Identities=35%  Similarity=0.719  Sum_probs=17.3

Q ss_pred             eecccccccccchhhHHHHHHHh
Q 037179          193 FMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       193 ~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |.|++|++.|.+...|..|++++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            67888888888888888888753

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.20  E-value=0.00014  Score=44.41  Aligned_cols=40  Identities=25%  Similarity=0.449  Sum_probs=32.6

Q ss_pred             CEEe-EcCccccCchHHHHHHHhhCCCC-CCccCCCCCccccc
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAFGSGH-GPFSRPFDGVEVLD  258 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~H~~~-~p~~C~~C~k~f~~  258 (266)
                      .|.| .|++.| ....|..|....|..+ +.+.|++|...+..
T Consensus         2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~   43 (54)
T PF05605_consen    2 SFTCPYCGKGF-SESSLVEHCEDEHRSESKNVVCPICSSRVTD   43 (54)
T ss_pred             CcCCCCCCCcc-CHHHHHHHHHhHCcCCCCCccCCCchhhhhh
Confidence            4889 999955 5678999998888875 57999999987653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=97.00  E-value=0.0016  Score=57.38  Aligned_cols=152  Identities=17%  Similarity=0.154  Sum_probs=99.1

Q ss_pred             CCCCCCcccccccccCCCchhhh--hhcCC--Cceecc--cccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCC
Q 037179           79 NPSAKGNANVAAAKQYWIPTPEQ--ILIGF--THFSCH--VCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILG  152 (266)
Q Consensus        79 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--k~~~C~--~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~  152 (266)
                      .++.|..|...|.....|.+|.+  .|.++  +++.|.  .|++.|.+...+..|...|.+...                
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  351 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISP----------------  351 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCc----------------
Confidence            57999999999999999999999  89999  999999  799999999999999999975432                


Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChh-----hHHHHhhhhcCCCCeecc--cccccccchhhHHHHHHHh--CC--CEEe
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFR-----TLQTHYKRKHGLKPFMCR--KCGKFLAVKGDWRTHEKNC--GK--RWLC  221 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~-----~l~~H~~~h~~~kp~~C~--~C~k~f~~~~~L~~H~~~~--~k--~~~C  221 (266)
                      ..+..-...          +.+....     ........-...+.+.+.  .|-..+.....+..|...+  ..  .+.+
T Consensus       352 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (467)
T COG5048         352 AKEKLLNSS----------SKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKN  421 (467)
T ss_pred             cccccccCc----------cccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCC
Confidence            111111100          1111000     011111112223344443  3555666666666665543  23  4445


Q ss_pred             -EcCccccCchHHHHHHHhhCCCCCCccCCCCCcccc
Q 037179          222 -VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVL  257 (266)
Q Consensus       222 -~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~  257 (266)
                       .|.+.|.....|..|++. |....++.|..++..+.
T Consensus       422 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  457 (467)
T COG5048         422 PPCSKSFNRHYNLIPHKKI-HTNHAPLLCSILKSFRR  457 (467)
T ss_pred             CcchhhccCcccccccccc-cccCCceeeccccccch
Confidence             788888888888888887 66666666666554443

>smart00355 ZnF_C2H2 zinc finger

Probab=96.62  E-value=0.0015  Score=32.76  Aligned_cols=20  Identities=45%  Similarity=0.974  Sum_probs=11.8

Q ss_pred             Ee-EcCccccCchHHHHHHHh
Q 037179          220 LC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       220 ~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      .| .|++.|.....|..|++.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHH
Confidence            45 566666666666666554

>smart00355 ZnF_C2H2 zinc finger

Probab=96.62  E-value=0.0011  Score=33.33  Aligned_cols=23  Identities=26%  Similarity=0.700  Sum_probs=20.8

Q ss_pred             eecccccccccchhhHHHHHHHh
Q 037179          193 FMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       193 ~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            57999999999999999999865

>PRK04860 hypothetical protein; Provisional

Probab=96.53  E-value=0.00072  Score=51.06  Aligned_cols=39  Identities=15%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             CCCCCcccccccccCCCchhhhhhcCCCceecccccccccChh
Q 037179           80 PSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYN  122 (266)
Q Consensus        80 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~  122 (266)
                      +|.|. |+.   ....+.+|.++|.++++|.|..|+..|....
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            59998 997   5666899999999999999999999986543

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.0073  Score=55.23  Aligned_cols=129  Identities=19%  Similarity=0.286  Sum_probs=73.6

Q ss_pred             CCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCC
Q 037179           81 SAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAE  160 (266)
Q Consensus        81 ~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~  160 (266)
                      +.|.+|++.|.....            .-.|..| -.|.....|..|++..++.                  +-|..|-.
T Consensus       100 ~~C~~C~~~~~~~~~------------~~~~~~c-~~~~s~~~Lk~H~~~~H~~------------------~~c~lC~~  148 (669)
T KOG2231|consen  100 HSCHICDRRFRALYN------------KKECLHC-TEFKSVENLKNHMRDQHKL------------------HLCSLCLQ  148 (669)
T ss_pred             hhcCccccchhhhcc------------cCCCccc-cchhHHHHHHHHHHHhhhh------------------hccccccc
Confidence            567777766643211            1236666 5566778888888533221                  45666653


Q ss_pred             CccCCCCCCCCCCCCChhhHHHHhhhhc-CCCC----eecccccccccchhhHHHHHHHhCCCEEe-Ec------Ccccc
Q 037179          161 GCKNSINHPKAKPLKDFRTLQTHYKRKH-GLKP----FMCRKCGKFLAVKGDWRTHEKNCGKRWLC-VC------GSDFK  228 (266)
Q Consensus       161 ~~~~~~~~~~~k~f~~~~~l~~H~~~h~-~~kp----~~C~~C~k~f~~~~~L~~H~~~~~k~~~C-~C------~k~F~  228 (266)
                      .-+-.++-   ....+...|..|+..-. +++.    -.|..|...|.....|.+|++.  ..|.| .|      +.-|.
T Consensus       149 ~~kif~~e---~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~--~h~~chfC~~~~~~neyy~  223 (669)
T KOG2231|consen  149 NLKIFINE---RKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRF--DHEFCHFCDYKTGQNEYYN  223 (669)
T ss_pred             cceeeeee---eehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhcc--ceeheeecCcccccchhcc
Confidence            21100000   11234566777766421 1222    3688888888888888888883  33456 55      34466


Q ss_pred             CchHHHHHHHhhCCCCCCccCC
Q 037179          229 HKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       229 ~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      ....|..|-|..|     |.|+
T Consensus       224 ~~~dLe~HfR~~H-----flCE  240 (669)
T KOG2231|consen  224 DYDDLEEHFRKGH-----FLCE  240 (669)
T ss_pred             cchHHHHHhhhcC-----cccc
Confidence            7778888888755     5666

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.18  E-value=0.0032  Score=31.56  Aligned_cols=21  Identities=29%  Similarity=0.975  Sum_probs=13.8

Q ss_pred             EEe-EcCccccCchHHHHHHHh
Q 037179          219 WLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       219 ~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      |.| +|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            456 666666666666666654

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.16  E-value=0.0035  Score=31.13  Aligned_cols=22  Identities=32%  Similarity=0.615  Sum_probs=14.0

Q ss_pred             EEe-EcCccccCchHHHHHHHhhC
Q 037179          219 WLC-VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       219 ~~C-~C~k~F~~~~~L~~H~~~~H  241 (266)
                      |+| .|+.... ...|.+|++++|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            567 7777666 667777777754

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.93  E-value=0.0048  Score=30.87  Aligned_cols=23  Identities=35%  Similarity=0.806  Sum_probs=19.8

Q ss_pred             eecccccccccChhhHHhhhhhc
Q 037179          109 FSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus       109 ~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      |.|..|++.|.....|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            67999999999999999998754

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.80  E-value=0.0072  Score=35.53  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=17.7

Q ss_pred             CCceecccccccccChhhHHhhhhhcCCC
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +.|-.|++|+..+.+..+|.+|+.++++.
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            45677888888888888888888766544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.74  E-value=0.0072  Score=35.52  Aligned_cols=25  Identities=24%  Similarity=0.538  Sum_probs=12.4

Q ss_pred             CCCCeecccccccccchhhHHHHHH
Q 037179          189 GLKPFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       189 ~~kp~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      .+.|-.|++|+..+.+..+|++|+.
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle   45 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLE   45 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHH
T ss_pred             cCCCCCCCcchhhccchhhHHHHHH
Confidence            3556666666666666666666664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=95.58  E-value=0.0042  Score=60.20  Aligned_cols=149  Identities=17%  Similarity=0.258  Sum_probs=95.8

Q ss_pred             CCCCcccccccccCCCchhhh-hhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCC
Q 037179           81 SAKGNANVAAAKQYWIPTPEQ-ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCA  159 (266)
Q Consensus        81 ~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~  159 (266)
                      -.|.-|+..+.....+..|+. ++...+.|.|+.|+..|+....|..|+|.-+-+..                  -.+|.
T Consensus       437 ~e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~------------------~~~c~  498 (1406)
T KOG1146|consen  437 VELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQ------------------SAYCK  498 (1406)
T ss_pred             ccccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccc------------------hhHhH
Confidence            356667777777777777763 56667889999999999999999999997432211                  01111


Q ss_pred             CCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHH--h----------------------
Q 037179          160 EGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN--C----------------------  215 (266)
Q Consensus       160 ~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~--~----------------------  215 (266)
                                   .+.....+.+-...--+.+||.|..|..++..+..|.+|+..  |                      
T Consensus       499 -------------~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v  565 (1406)
T KOG1146|consen  499 -------------AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASV  565 (1406)
T ss_pred             -------------hccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhh
Confidence                         000000011111112245678888888888888888888751  0                      


Q ss_pred             ---------------------CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCccccccc
Q 037179          216 ---------------------GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDA  260 (266)
Q Consensus       216 ---------------------~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~~  260 (266)
                                           .-++.| +|+..-+-..+|+.||..-+.-..|.-|..|+-.+...+
T Consensus       566 ~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~  632 (1406)
T KOG1146|consen  566 TSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLAS  632 (1406)
T ss_pred             cccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccc
Confidence                                 123789 999998888889999886444444566766666665544

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.27  E-value=0.011  Score=30.31  Aligned_cols=22  Identities=41%  Similarity=0.706  Sum_probs=18.8

Q ss_pred             eecccccccccChhhHHhhhhh
Q 037179          109 FSCHVCFKTFNRYNNLQMHMWG  130 (266)
Q Consensus       109 ~~C~~C~k~F~~~~~L~~H~~~  130 (266)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6789999999999999988864

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.73  E-value=0.014  Score=28.82  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=16.0

Q ss_pred             eecccccccccChhhHHhhhhhc
Q 037179          109 FSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus       109 ~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      |.|+.|+.... ...|.+|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            67888888777 78888888775

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.36  E-value=0.0092  Score=30.54  Aligned_cols=21  Identities=29%  Similarity=0.814  Sum_probs=11.4

Q ss_pred             eecccccccccchhhHHHHHH
Q 037179          193 FMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       193 ~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      |-|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            445555555555555555543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=93.75  E-value=0.13  Score=42.98  Aligned_cols=75  Identities=13%  Similarity=0.241  Sum_probs=58.0

Q ss_pred             CeecccccccccchhhHHHHHHH--hC-----------------------------------------------------
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEKN--CG-----------------------------------------------------  216 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~~--~~-----------------------------------------------------  216 (266)
                      .++|-.|.|.|+.+..|+.||+.  |.                                                     
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~  274 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD  274 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence            37999999999999999999982  10                                                     


Q ss_pred             -CC--EEe-EcCccccCchHHHHHHHhhCC--------------------------CCCCccCCCCCcccccccccccCC
Q 037179          217 -KR--WLC-VCGSDFKHKRSLKDHIKAFGS--------------------------GHGPFSRPFDGVEVLDDASSSLLV  266 (266)
Q Consensus       217 -k~--~~C-~C~k~F~~~~~L~~H~~~~H~--------------------------~~~p~~C~~C~k~f~~~~~~~~~~  266 (266)
                       .+  -+| .|....-....|..||+++|.                          ..+.-.|-.|.-.|-.+..+.-||
T Consensus       275 a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm  354 (423)
T KOG2482|consen  275 AEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHM  354 (423)
T ss_pred             CCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhc
Confidence             01  479 999999889999999999884                          122345888888888877665443

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.51  E-value=0.023  Score=49.96  Aligned_cols=132  Identities=15%  Similarity=0.164  Sum_probs=95.6

Q ss_pred             CceecccccccccChhhHHhhhh--hcCCCCCCCCCCcCCCCCCccCCcCCC--CCCCCccCCCCCCCCCCCCChhhHHH
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMW--GHGSQYRKGPESLKGTQPRAILGIPCY--CCAEGCKNSINHPKAKPLKDFRTLQT  182 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~--~h~~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~~~~~k~f~~~~~l~~  182 (266)
                      .++.|..|...|.....|..|.+  .|.++.              ...+.|.  .|+            +.|.....+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~--------------~~~~~~p~~~~~------------~~~~~~~~~~~  341 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGES--------------LKPFSCPYSLCG------------KLFSRNDALKR  341 (467)
T ss_pred             cCCCCccccCCcccccccccccccccccccc--------------CCceeeeccCCC------------ccccccccccC
Confidence            46889999999999999999999  786541              1227777  788            88999999999


Q ss_pred             HhhhhcCCCCeeccc--ccccccchhhHHHHHH-------HhCCCEEe---EcCccccCchHHHHHHHhhCCCCC--Ccc
Q 037179          183 HYKRKHGLKPFMCRK--CGKFLAVKGDWRTHEK-------NCGKRWLC---VCGSDFKHKRSLKDHIKAFGSGHG--PFS  248 (266)
Q Consensus       183 H~~~h~~~kp~~C~~--C~k~f~~~~~L~~H~~-------~~~k~~~C---~C~k~F~~~~~L~~H~~~~H~~~~--p~~  248 (266)
                      |..+|++.+++.+..  +.+.+.....-..++.       ...+.+.+   .|-..+.....+..|... |...+  .+.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  420 (467)
T COG5048         342 HILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIIT-HLSFRPYNCK  420 (467)
T ss_pred             CcccccCCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhcccccccccccc-ccccCCcCCC
Confidence            999999988887754  5555544433111111       12566777   588899999999998876 66655  567


Q ss_pred             CCCCCcccccccccccC
Q 037179          249 RPFDGVEVLDDASSSLL  265 (266)
Q Consensus       249 C~~C~k~f~~~~~~~~~  265 (266)
                      +..|.+.|.....+..+
T Consensus       421 ~~~~~~~~~~~~~~~~~  437 (467)
T COG5048         421 NPPCSKSFNRHYNLIPH  437 (467)
T ss_pred             CCcchhhccCccccccc
Confidence            78899888877665543

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=93.49  E-value=0.025  Score=44.67  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=15.1

Q ss_pred             CceecccccccccChhhHHhhhhhc
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      |+| |-+|.+.|....-|.+|++..
T Consensus        10 kpw-cwycnrefddekiliqhqkak   33 (341)
T KOG2893|consen   10 KPW-CWYCNREFDDEKILIQHQKAK   33 (341)
T ss_pred             Cce-eeecccccchhhhhhhhhhhc
Confidence            444 666666666666666666543

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.47  E-value=0.065  Score=26.85  Aligned_cols=19  Identities=32%  Similarity=0.618  Sum_probs=10.2

Q ss_pred             ecccccccccchhhHHHHHH
Q 037179          194 MCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       194 ~C~~C~k~f~~~~~L~~H~~  213 (266)
                      .|..||+.| ....|..|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            455566666 4445555554

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.28  E-value=0.034  Score=54.26  Aligned_cols=66  Identities=21%  Similarity=0.392  Sum_probs=52.2

Q ss_pred             CCChhhHHHHhh-hhcCCCCeecccccccccchhhHHHHHHH---------------------------hCCCEEe-EcC
Q 037179          174 LKDFRTLQTHYK-RKHGLKPFMCRKCGKFLAVKGDWRTHEKN---------------------------CGKRWLC-VCG  224 (266)
Q Consensus       174 f~~~~~l~~H~~-~h~~~kp~~C~~C~k~f~~~~~L~~H~~~---------------------------~~k~~~C-~C~  224 (266)
                      +.....+..|+. .|.-.|.|+|..|+..|.....|-.|+|+                           ..+||.| .|.
T Consensus       446 ~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~  525 (1406)
T KOG1146|consen  446 LESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACN  525 (1406)
T ss_pred             hhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeee
Confidence            333334444433 45556889999999999999999999984                           1378999 999


Q ss_pred             ccccCchHHHHHHHh
Q 037179          225 SDFKHKRSLKDHIKA  239 (266)
Q Consensus       225 k~F~~~~~L~~H~~~  239 (266)
                      .++..+..|.+|+..
T Consensus       526 ~stttng~LsihlqS  540 (1406)
T KOG1146|consen  526 YSTTTNGNLSIHLQS  540 (1406)
T ss_pred             eeeecchHHHHHHHH
Confidence            999999999999874

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.01  E-value=0.076  Score=28.78  Aligned_cols=21  Identities=29%  Similarity=0.793  Sum_probs=13.8

Q ss_pred             CEEe-EcCccccCchHHHHHHH
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIK  238 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~  238 (266)
                      +|.| .|++.|.....+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4666 67777776666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.45  E-value=0.086  Score=28.58  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             CeecccccccccchhhHHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      +|.|.+|++.|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            58899999999999999999873

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=92.01  E-value=0.059  Score=42.63  Aligned_cols=40  Identities=23%  Similarity=0.465  Sum_probs=21.9

Q ss_pred             cccccccccchhhHHHHHHHhCCCEEe-EcCccccCchHHHHH
Q 037179          195 CRKCGKFLAVKGDWRTHEKNCGKRWLC-VCGSDFKHKRSLKDH  236 (266)
Q Consensus       195 C~~C~k~f~~~~~L~~H~~~~~k~~~C-~C~k~F~~~~~L~~H  236 (266)
                      |=+|++.|....-|++|++  .|.|+| +|-|...+--.|..|
T Consensus        13 cwycnrefddekiliqhqk--akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQK--AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhhhh--hccceeeeehhhhccCCCceee
Confidence            4455555655555555555  455556 565554444445444

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=90.62  E-value=0.17  Score=27.20  Aligned_cols=10  Identities=30%  Similarity=0.657  Sum_probs=6.1

Q ss_pred             CCccCCCCCc
Q 037179          245 GPFSRPFDGV  254 (266)
Q Consensus       245 ~p~~C~~C~k  254 (266)
                      .|..|++||.
T Consensus        16 ~~~~CP~Cg~   25 (33)
T cd00350          16 APWVCPVCGA   25 (33)
T ss_pred             CCCcCcCCCC
Confidence            5566666663

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.55  E-value=0.37  Score=44.52  Aligned_cols=136  Identities=19%  Similarity=0.295  Sum_probs=82.1

Q ss_pred             CCCcccccccccCCCchhh-hhhcCCCceecccccc---cc------cChhhHHhhhhhcCCCCCCCCCCcCCCCCCccC
Q 037179           82 AKGNANVAAAKQYWIPTPE-QILIGFTHFSCHVCFK---TF------NRYNNLQMHMWGHGSQYRKGPESLKGTQPRAIL  151 (266)
Q Consensus        82 ~C~~C~~~f~~~~~l~~H~-~~h~~~k~~~C~~C~k---~F------~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~  151 (266)
                      .|..| -.|.....|..|+ ..|-.   +.|..|-.   .|      -+...|..|+..-..    +..+..+       
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~----d~~s~rG-------  181 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP----DDESCRG-------  181 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeehehHHHHHHHHhcCCC----ccccccC-------
Confidence            69999 7888888899999 44533   44555432   12      344667777754321    0001111       


Q ss_pred             CcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccc------cccccchhhHHHHHHHhCCCEEe---E
Q 037179          152 GIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKC------GKFLAVKGDWRTHEKNCGKRWLC---V  222 (266)
Q Consensus       152 ~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C------~k~f~~~~~L~~H~~~~~k~~~C---~  222 (266)
                      .-.|..|.            ..|.....|.+|++.++    |.|..|      +-.|....+|..|-+.  ..|.|   .
T Consensus       182 hp~C~~C~------------~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~--~HflCE~~~  243 (669)
T KOG2231|consen  182 HPLCKFCH------------ERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRK--GHFLCEEEF  243 (669)
T ss_pred             Cccchhhh------------hhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhh--cCccccccc
Confidence            25688998            78999999999999765    556555      4568888999999884  33445   2


Q ss_pred             cC-ccccCchHHHHHHHh---hCCCCCCccCC
Q 037179          223 CG-SDFKHKRSLKDHIKA---FGSGHGPFSRP  250 (266)
Q Consensus       223 C~-k~F~~~~~L~~H~~~---~H~~~~p~~C~  250 (266)
                      |. +.|..--.+..|++.   ++.-++.|.|.
T Consensus       244 C~~~~f~~~~~~ei~lk~~~~~~~~e~~~~~~  275 (669)
T KOG2231|consen  244 CRTKKFYVAFELEIELKAHNRFIQHEKCYICR  275 (669)
T ss_pred             cccceeeehhHHHHHHHhhccccchheeccCC
Confidence            32 223333234444442   23445556554

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.76  E-value=0.22  Score=41.72  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=15.4

Q ss_pred             eeccc--ccccccChhhHHhhhhhcCC
Q 037179          109 FSCHV--CFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       109 ~~C~~--C~k~F~~~~~L~~H~~~h~~  133 (266)
                      |.|+.  |.........|+.|.++.++
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~  178 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG  178 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC
Confidence            66765  55555555677778766543

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=88.90  E-value=0.54  Score=39.48  Aligned_cols=23  Identities=35%  Similarity=0.600  Sum_probs=20.8

Q ss_pred             eecccccccccChhhHHhhhhhc
Q 037179          109 FSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus       109 ~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      +.|-.|.+.|..+..|..|||..
T Consensus       196 ~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  196 LRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             heeeeeccccCCcHHHHHHHHhc
Confidence            78999999999999999999753

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.08  E-value=0.16  Score=39.35  Aligned_cols=77  Identities=21%  Similarity=0.405  Sum_probs=59.4

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHH------------hCCCEE
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN------------CGKRWL  220 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~------------~~k~~~  220 (266)
                      +.|.+-+..          ..|........|..+-+|.   .|..|.+.|.+...|..|+..            +..-|+
T Consensus        80 ~~cqvagc~----------~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~  146 (253)
T KOG4173|consen   80 FACQVAGCC----------QVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQ  146 (253)
T ss_pred             ccccccchH----------HHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHH
Confidence            677776643          6677777777777654443   799999999999999999871            234599


Q ss_pred             e---EcCccccCchHHHHHHHhhCC
Q 037179          221 C---VCGSDFKHKRSLKDHIKAFGS  242 (266)
Q Consensus       221 C---~C~k~F~~~~~L~~H~~~~H~  242 (266)
                      |   .|+-.|.+...-..|+-..|.
T Consensus       147 ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  147 CLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HHHHhhhhhhhhhhhhhhHHHHhcc
Confidence            9   599999999999999877664

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=85.92  E-value=0.37  Score=28.91  Aligned_cols=28  Identities=21%  Similarity=0.554  Sum_probs=23.5

Q ss_pred             hhcCCCCeecccccccccchhhHHHHHH
Q 037179          186 RKHGLKPFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       186 ~h~~~kp~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      ...||.-+.|+-||..|....+..+|..
T Consensus        11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          11 DRDGEEFLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             ccCCceeeeCCchhHHHHHhHHHHHHhh
Confidence            3457778899999999999999998887

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.64  E-value=0.82  Score=36.78  Aligned_cols=46  Identities=28%  Similarity=0.602  Sum_probs=31.0

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHH
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      |.|..||+.++             +..+.+|+..-++ .-|.|-.||+.|.. .+...|..
T Consensus         4 FtCnvCgEsvK-------------Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    4 FTCNVCGESVK-------------KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             Eehhhhhhhcc-------------ccchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            77888885422             3466777776666 56788888888877 55566665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.29  E-value=0.49  Score=37.79  Aligned_cols=44  Identities=7%  Similarity=-0.041  Sum_probs=30.5

Q ss_pred             CCCCCCCcccccccccCCCchhhhh---h-------cCCCc-----eecccccccccCh
Q 037179           78 NNPSAKGNANVAAAKQYWIPTPEQI---L-------IGFTH-----FSCHVCFKTFNRY  121 (266)
Q Consensus        78 ~~~~~C~~C~~~f~~~~~l~~H~~~---h-------~~~k~-----~~C~~C~k~F~~~  121 (266)
                      ++.+.|++|++.|....-.....++   .       .+..|     ..|+.||.+|...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            3568899999999987665555442   1       12233     5799999987654

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=83.07  E-value=2.5  Score=36.23  Aligned_cols=49  Identities=20%  Similarity=0.415  Sum_probs=40.3

Q ss_pred             CCeecccccccccchhhHHHHHHHh-------------------------CCCEEe-EcC---ccccCchHHHHHHHh
Q 037179          191 KPFMCRKCGKFLAVKGDWRTHEKNC-------------------------GKRWLC-VCG---SDFKHKRSLKDHIKA  239 (266)
Q Consensus       191 kp~~C~~C~k~f~~~~~L~~H~~~~-------------------------~k~~~C-~C~---k~F~~~~~L~~H~~~  239 (266)
                      -|-.|-.|++.|..-..-..||..+                         ...|.| .|.   +.|.+....+.||..
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            3567888999999888888888731                         245889 999   999999999999985

>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation

Probab=80.13  E-value=2.2  Score=31.81  Aligned_cols=53  Identities=19%  Similarity=0.299  Sum_probs=20.8

Q ss_pred             cCCCceecccccccc------cChhhHHhhhhh-cCCCCCCCCCCcCCCCCCccCCcCCCCCCCC
Q 037179          104 IGFTHFSCHVCFKTF------NRYNNLQMHMWG-HGSQYRKGPESLKGTQPRAILGIPCYCCAEG  161 (266)
Q Consensus       104 ~~~k~~~C~~C~k~F------~~~~~L~~H~~~-h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~  161 (266)
                      ...-..+|..|++.|      +..+++..|+.. .+.+-...++..     .....++|+.||..
T Consensus        10 ~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~-----lgdt~leCy~Cg~~   69 (152)
T PF09416_consen   10 DPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSP-----LGDTVLECYNCGSR   69 (152)
T ss_dssp             -CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTST-----T-S-B---TTT---
T ss_pred             CcccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCC-----CCCcEEEEEecCCC
Confidence            334446777787777      344566667532 222211122222     23334899999943

This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-04

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 179 TLQTHYKRKH-GLKPFMCRKCGKFLAVKGDWRTHEKN----CGKRWLC-VCGSDFKHKRS 232
           +  +   R H G KP+ C  C       G  + H          ++ C  C +    K  
Sbjct: 2   SSGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60

Query: 233 LKDHIKAFGSGHGPFS 248
           L  H++   S  GP S
Sbjct: 61  LGVHLRKQHSYSGPSS 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.92
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.9
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.9
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.9
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.8
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.8
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.8
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.79
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.77
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.77
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.76
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.76
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.75
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.75
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.75
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.74
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.74
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.74
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.73
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.73
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.71
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.7
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.68
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.68
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.68
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.67
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.67
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.67
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.66
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.66
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.66
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.65
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.64
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.63
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.62
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.61
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.6
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.59
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.59
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.57
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.56
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.55
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.55
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.54
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.52
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.52
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.51
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.5
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.49
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.49
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.48
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.46
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.45
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.45
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.45
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.42
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.41
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.4
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.39
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.38
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.38
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.38
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.36
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.33
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.27
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.26
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.24
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.24
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.22
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.22
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.22
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.22
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.21
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.21
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.21
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.2
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.19
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.18
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.18
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.17
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.17
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.16
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.14
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.13
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.12
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.12
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.12
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.11
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.1
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.1
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.09
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.09
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.09
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.09
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.08
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.08
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.07
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.07
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.07
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.07
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.06
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.06
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.06
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.05
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.03
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.02
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.01
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.0
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.0
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.99
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.99
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.95
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.94
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.94
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.93
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.93
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.92
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.92
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.9
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.9
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.9
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.9
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.89
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.89
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.88
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.87
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.87
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.87
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.85
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.84
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.84
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.83
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.81
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.81
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.8
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.77
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.74
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.67
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.67
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.67
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.63
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.61
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.61
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.6
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.57
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.54
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.47
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.47
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.46
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.46
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.45
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.44
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.44
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.43
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.43
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.43
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.39
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.39
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.38
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.38
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.73
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.36
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.69
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.34
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.33
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.31
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.31
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.3
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.28
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.27
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.27
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.26
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.26
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.23
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.22
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.2
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.2
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.19
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.49
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.18
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.14
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.13
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.11
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.08
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.35
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.07
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.06
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.32
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.29
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.03
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.01
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.0
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.84
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.72
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.26
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.0
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.82
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.39
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.12
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.95
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.67
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.06
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.0
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.71
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	88.08
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	87.68
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	86.68
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	86.22
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	83.95
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	83.84
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	83.25
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	82.31
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	82.24

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2e-38  Score=248.65  Aligned_cols=169  Identities=21%  Similarity=0.414  Sum_probs=136.6

Q ss_pred             cCCCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCC
Q 037179           68 IGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQP  147 (266)
Q Consensus        68 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~  147 (266)
                      +..+...+.++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|.++.+           
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-----------   77 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-----------   77 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCC-----------
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCC-----------
Confidence            445666788899999999999999999999999999999999999999999999999999999965433           


Q ss_pred             CccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcC
Q 037179          148 RAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCG  224 (266)
Q Consensus       148 ~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~  224 (266)
                           |.|..|+            +.|.....|..|+++|.++++|.|.+|++.|.....|..|+++|  ++||.| .|+
T Consensus        78 -----~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  140 (190)
T 2i13_A           78 -----YKCPECG------------KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG  140 (190)
T ss_dssp             -----EECTTTC------------CEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             -----ccCcccC------------CccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCC
Confidence                 9999999            99999999999999999999999999999999999999999975  899999 999


Q ss_pred             ccccCchHHHHHHHhhCCCCCCccCCCCCcccccccccccC
Q 037179          225 SDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDASSSLL  265 (266)
Q Consensus       225 k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~~~~~~~  265 (266)
                      +.|.....|..|+++ |++++||.|++|++.|.++.+|..|
T Consensus       141 ~~f~~~~~L~~H~~~-H~~~~~~~C~~C~~~f~~~~~L~~H  180 (190)
T 2i13_A          141 KSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVH  180 (190)
T ss_dssp             CEESCHHHHHHHHHH-HHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             cccCCHHHHHHHHHh-cCCCCCeECCCCCCccCCHHHHHHH
Confidence            999999999999998 7999999999999999999887654

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.4e-34  Score=225.35  Aligned_cols=164  Identities=21%  Similarity=0.436  Sum_probs=139.8

Q ss_pred             cCCCCccchhccccCCCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179           55 RNEEKDDVAVALHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      ...+...+.....+..+...|.++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|.++
T Consensus        24 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  103 (190)
T 2i13_A           24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE  103 (190)
T ss_dssp             -------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTC
T ss_pred             CCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCC
Confidence            44455566666677888889999999999999999999999999999999999999999999999999999999999654


Q ss_pred             CCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHH
Q 037179          135 YRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      .+                |.|..|+            +.|.....|..|+++|++++||.|.+|++.|.....|..|+++
T Consensus       104 ~~----------------~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~  155 (190)
T 2i13_A          104 KP----------------YACPECG------------KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT  155 (190)
T ss_dssp             CC----------------EECTTTC------------CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CC----------------CcCCCCC------------CccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            33                9999999            9999999999999999999999999999999999999999997


Q ss_pred             h--CCCEEe-EcCccccCchHHHHHHHhhCCCCCCc
Q 037179          215 C--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPF  247 (266)
Q Consensus       215 ~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~  247 (266)
                      |  ++||.| .|++.|.....|..|+++ |+|++||
T Consensus       156 H~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~k~~  190 (190)
T 2i13_A          156 HTGEKPYKCPECGKSFSRRDALNVHQRT-HTGKKTS  190 (190)
T ss_dssp             HHCCCCEECTTTCCEESSHHHHHHHHTT-C------
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHh-cCCCCCC
Confidence            6  899999 999999999999999998 8999987

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=1.5e-32  Score=215.20  Aligned_cols=159  Identities=17%  Similarity=0.266  Sum_probs=144.5

Q ss_pred             CCCCCCCCC--CcccccccccCCCchhhhhhcCCCceec--ccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCcc
Q 037179           75 HSSNNPSAK--GNANVAAAKQYWIPTPEQILIGFTHFSC--HVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAI  150 (266)
Q Consensus        75 ~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~  150 (266)
                      ....++|.|  +.|++.|.....|..|+++|.++++|.|  ..|++.|.....|..|+++|.++.+              
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~--------------   72 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN--------------   72 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCC--------------
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCc--------------
Confidence            345688999  6899999999999999999999999999  8899999999999999999976543              


Q ss_pred             CCcCCC--CCCCCccCCCCCCCCCCCCChhhHHHHh-hhh-cCCCCeec--ccccccccchhhHHHHHHHh--CCCEEe-
Q 037179          151 LGIPCY--CCAEGCKNSINHPKAKPLKDFRTLQTHY-KRK-HGLKPFMC--RKCGKFLAVKGDWRTHEKNC--GKRWLC-  221 (266)
Q Consensus       151 ~~~~C~--~C~~~~~~~~~~~~~k~f~~~~~l~~H~-~~h-~~~kp~~C--~~C~k~f~~~~~L~~H~~~~--~k~~~C-  221 (266)
                        |.|.  .|+            +.|.....|..|+ +.| .++++|.|  ..||+.|.....|..|+++|  ++||.| 
T Consensus        73 --~~C~~~~C~------------~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  138 (190)
T 1tf6_A           73 --FTCDSDGCD------------LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP  138 (190)
T ss_dssp             --EECCSSSCC------------CEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCC
T ss_pred             --eeCCCCCCC------------CccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCC
Confidence              9999  899            9999999999999 677 57899999  99999999999999999986  799999 


Q ss_pred             E--cCccccCchHHHHHHHhhCCCCCCccCCC---CCcccccccccccC
Q 037179          222 V--CGSDFKHKRSLKDHIKAFGSGHGPFSRPF---DGVEVLDDASSSLL  265 (266)
Q Consensus       222 ~--C~k~F~~~~~L~~H~~~~H~~~~p~~C~~---C~k~f~~~~~~~~~  265 (266)
                      .  |++.|.+.+.|..|+++ |+|   |.|++   |++.|.+...|..|
T Consensus       139 ~~~C~k~F~~~~~L~~H~~~-H~~---~~C~~~~~C~~~f~~~~~l~~H  183 (190)
T 1tf6_A          139 HEGCDKRFSLPSRLKRHEKV-HAG---YPCKKDDSCSFVGKTWTLYLKH  183 (190)
T ss_dssp             SSSCCCBCSSHHHHHHHHTS-SCS---CCCCSTTTCCCCCSCHHHHHHH
T ss_pred             CCCCCchhcCHHHHHHHHHH-hCC---CcCCCCCcCCCccccHHHHHHH
Confidence            8  99999999999999998 777   99999   99999999887654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.95  E-value=1.6e-29  Score=197.87  Aligned_cols=160  Identities=17%  Similarity=0.250  Sum_probs=141.8

Q ss_pred             CCCCccchhccccCCCccCCCCCCCCCC--CcccccccccCCCchhhhhhcCCCceecc--cccccccChhhHHhhh-hh
Q 037179           56 NEEKDDVAVALHIGLPNYSHSSNNPSAK--GNANVAAAKQYWIPTPEQILIGFTHFSCH--VCFKTFNRYNNLQMHM-WG  130 (266)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~-~~  130 (266)
                      ..+...+.....+..+...|.++++|.|  +.|++.|.....|..|+++|.++++|.|.  .|++.|.....|..|+ +.
T Consensus        18 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~   97 (190)
T 1tf6_A           18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF   97 (190)
T ss_dssp             TTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTT
T ss_pred             CCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHh
Confidence            3566667667777788888999999999  89999999999999999999999999999  8999999999999999 66


Q ss_pred             cCCCCCCCCCCcCCCCCCccCCcCC--CCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeeccc--ccccccchh
Q 037179          131 HGSQYRKGPESLKGTQPRAILGIPC--YCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRK--CGKFLAVKG  206 (266)
Q Consensus       131 h~~~~~~~~~~~~~~~~~~~~~~~C--~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~--C~k~f~~~~  206 (266)
                      |..          +.     ..|.|  ..|+            +.|.....|..|+++|++++||.|..  |++.|...+
T Consensus        98 h~~----------~~-----~~~~C~~~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~  150 (190)
T 1tf6_A           98 HNI----------KI-----CVYVCHFENCG------------KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPS  150 (190)
T ss_dssp             SST----------TT-----SCCEECSSSSC------------EECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHH
T ss_pred             cCC----------Cc-----ceeeCCCCCCc------------cccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHH
Confidence            631          11     22899  8899            99999999999999999999999988  999999999


Q ss_pred             hHHHHHHHhCCCEEe-E---cCccccCchHHHHHHHhhCCCC
Q 037179          207 DWRTHEKNCGKRWLC-V---CGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       207 ~L~~H~~~~~k~~~C-~---C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      .|..|+++|.. |.| .   |++.|.....|..|+++ |+|+
T Consensus       151 ~L~~H~~~H~~-~~C~~~~~C~~~f~~~~~l~~H~~~-h~~e  190 (190)
T 1tf6_A          151 RLKRHEKVHAG-YPCKKDDSCSFVGKTWTLYLKHVAE-CHQD  190 (190)
T ss_dssp             HHHHHHTSSCS-CCCCSTTTCCCCCSCHHHHHHHHTT-CC--
T ss_pred             HHHHHHHHhCC-CcCCCCCcCCCccccHHHHHHHHHh-hcCC
Confidence            99999999865 999 8   99999999999999998 5553

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.95  E-value=6.2e-28  Score=182.58  Aligned_cols=134  Identities=24%  Similarity=0.460  Sum_probs=100.0

Q ss_pred             CCCCCCcccccccccCCCchhhh---hhcCCCceecccc-----cccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCcc
Q 037179           79 NPSAKGNANVAAAKQYWIPTPEQ---ILIGFTHFSCHVC-----FKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAI  150 (266)
Q Consensus        79 ~~~~C~~C~~~f~~~~~l~~H~~---~h~~~k~~~C~~C-----~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~  150 (266)
                      -+|.|+.|++.|.....|..|++   +|.++++|.|..|     ++.|.....|..|+++|.++.+              
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~--------------   67 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP--------------   67 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCC--------------
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCC--------------
Confidence            35778888888888888888876   5777777777643     3777777788888777754332              


Q ss_pred             CCcCCCC--CCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeeccc--ccccccchhhHHHHH-HHh--CCCEEe-E
Q 037179          151 LGIPCYC--CAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRK--CGKFLAVKGDWRTHE-KNC--GKRWLC-V  222 (266)
Q Consensus       151 ~~~~C~~--C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~--C~k~f~~~~~L~~H~-~~~--~k~~~C-~  222 (266)
                        |.|..  |+            +.|.....|..|+++|++++||.|.+  |++.|.....|..|+ ++|  ++||.| .
T Consensus        68 --~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  133 (155)
T 2gli_A           68 --HKCTFEGCR------------KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL  133 (155)
T ss_dssp             --CCCCSTTCC------------CCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCS
T ss_pred             --ccCCCCCCC------------CcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCC
Confidence              77764  77            77777778888888887777888877  888888888888887 544  677888 7


Q ss_pred             --cCccccCchHHHHHHHhh
Q 037179          223 --CGSDFKHKRSLKDHIKAF  240 (266)
Q Consensus       223 --C~k~F~~~~~L~~H~~~~  240 (266)
                        |++.|...+.|..|+++|
T Consensus       134 ~~C~~~f~~~~~L~~H~~~h  153 (155)
T 2gli_A          134 PGCTKRYTDPSSLRKHVKTV  153 (155)
T ss_dssp             TTTCCEESSHHHHHHHHHHS
T ss_pred             CCCccccCCHHHHHHHHHhh
Confidence              888888888888887774

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=4e-27  Score=178.08  Aligned_cols=135  Identities=22%  Similarity=0.348  Sum_probs=116.9

Q ss_pred             CCceecccccccccChhhHHhhhh---hcCCCCCCCCCCcCCCCCCccCCcCCCCCC--CCccCCCCCCCCCCCCChhhH
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMW---GHGSQYRKGPESLKGTQPRAILGIPCYCCA--EGCKNSINHPKAKPLKDFRTL  180 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~---~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~--~~~~~~~~~~~~k~f~~~~~l  180 (266)
                      |.+|.|..|++.|.+...|..|++   +|.++++                |.|..|+  ..         .+.|.....|
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~----------------~~C~~c~C~~c---------~~~f~~~~~l   55 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKE----------------FVCHWGGCSRE---------LRPFKAQYML   55 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSC----------------CCCCBTTCTTT---------TCCCSSHHHH
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcc----------------eeCCCCCccch---------hhhhhhHHHH
Confidence            457999999999999999999998   5644322                6666432  11         1889999999


Q ss_pred             HHHhhhhcCCCCeeccc--ccccccchhhHHHHHHHh--CCCEEe-E--cCccccCchHHHHHHHhhCCCCCCccCCC--
Q 037179          181 QTHYKRKHGLKPFMCRK--CGKFLAVKGDWRTHEKNC--GKRWLC-V--CGSDFKHKRSLKDHIKAFGSGHGPFSRPF--  251 (266)
Q Consensus       181 ~~H~~~h~~~kp~~C~~--C~k~f~~~~~L~~H~~~~--~k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~~p~~C~~--  251 (266)
                      ..|+++|++++||.|..  |++.|.....|..|+++|  ++||.| .  |++.|.+.+.|..|++..|++++||.|++  
T Consensus        56 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~  135 (155)
T 2gli_A           56 VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPG  135 (155)
T ss_dssp             HHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTT
T ss_pred             HHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCC
Confidence            99999999999999985  999999999999999986  799999 8  99999999999999944499999999999  


Q ss_pred             CCcccccccccccC
Q 037179          252 DGVEVLDDASSSLL  265 (266)
Q Consensus       252 C~k~f~~~~~~~~~  265 (266)
                      |++.|.++++|..|
T Consensus       136 C~~~f~~~~~L~~H  149 (155)
T 2gli_A          136 CTKRYTDPSSLRKH  149 (155)
T ss_dssp             TCCEESSHHHHHHH
T ss_pred             CccccCCHHHHHHH
Confidence            99999999988765

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=4.5e-26  Score=167.52  Aligned_cols=109  Identities=18%  Similarity=0.297  Sum_probs=96.6

Q ss_pred             HHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeeccccccccc
Q 037179          124 LQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLA  203 (266)
Q Consensus       124 L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~  203 (266)
                      +..|.++|.|+++                |.|.+|+            +.|.....|..|+++|++++||.|++||++|.
T Consensus        10 ~~h~~~~h~Gek~----------------y~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~   61 (133)
T 2lt7_A           10 DDHYELIVDGRVY----------------YICIVCK------------RSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP   61 (133)
T ss_dssp             SSEEEEEETTEEE----------------EEETTTC------------CEESCHHHHHHHHHHHHCCSCEECSSSSCEES
T ss_pred             HhhceeecCCCcC----------------eECCCCC------------CCcCCHHHHHHHHHHcCCCCCeeCCccCeecc
Confidence            4455667765544                9999999            99999999999999999999999999999999


Q ss_pred             chhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCC-----CCCccCCCCCccccccc
Q 037179          204 VKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSG-----HGPFSRPFDGVEVLDDA  260 (266)
Q Consensus       204 ~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~-----~~p~~C~~C~k~f~~~~  260 (266)
                      ....|..|+++|  ++||.| +||+.|.+.+.|..|+++||.+     .++|+|.+|++.|....
T Consensus        62 ~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           62 LAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             SHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             cccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            999999999976  899999 9999999999999999997643     35799999999987653

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=5.7e-26  Score=166.95  Aligned_cols=109  Identities=22%  Similarity=0.304  Sum_probs=97.7

Q ss_pred             CCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCC
Q 037179           95 WIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPL  174 (266)
Q Consensus        95 ~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f  174 (266)
                      .+..|.++|.|+++|.|.+|++.|.....|..|+++|+++++                |.|..|+            +.|
T Consensus         9 h~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~----------------~~C~~C~------------k~F   60 (133)
T 2lt7_A            9 HDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK----------------YPCRYCE------------KVF   60 (133)
T ss_dssp             CSSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC----------------EECSSSS------------CEE
T ss_pred             HHhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC----------------eeCCccC------------eec
Confidence            455667889999999999999999999999999999976543                9999999            999


Q ss_pred             CChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--------CCCEEe-EcCccccCch
Q 037179          175 KDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--------GKRWLC-VCGSDFKHKR  231 (266)
Q Consensus       175 ~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--------~k~~~C-~C~k~F~~~~  231 (266)
                      .....|..|+++|+|++||.|++||++|...+.|..|++++        .++|.| .|++.|....
T Consensus        61 ~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           61 PLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             SSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             ccccchhhhccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            99999999999999999999999999999999999999974        357999 9999997653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=9e-25  Score=158.79  Aligned_cols=113  Identities=24%  Similarity=0.440  Sum_probs=80.0

Q ss_pred             CCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHh
Q 037179          105 GFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHY  184 (266)
Q Consensus       105 ~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~  184 (266)
                      ++++|.|..|++.|.....|..|+++|.++++                |.|..|+            +.|.....|..|+
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C~~C~------------~~f~~~~~l~~H~   55 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP----------------FECPKCG------------KCYFRKENLLEHE   55 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCS----------------CBCTTTC------------CBCSSHHHHHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCC----------------eECCCCC------------chhcCHHHHHHHH
Confidence            45566666666666666666666666644322                6666666            6666666666666


Q ss_pred             hh---hcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          185 KR---KHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       185 ~~---h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      +.   |.++++|.|.+|++.|.....|..|+++|  ++||.| +|++.|.+...|..|++.+|.++.
T Consensus        56 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           56 ARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             HHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             hhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            63   46677888888888888888888888765  678888 888888888888888876677753

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.91  E-value=8.8e-25  Score=165.24  Aligned_cols=125  Identities=22%  Similarity=0.342  Sum_probs=105.7

Q ss_pred             CCCceecccccccccChhhHHhhhhh-cCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHH
Q 037179          105 GFTHFSCHVCFKTFNRYNNLQMHMWG-HGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTH  183 (266)
Q Consensus       105 ~~k~~~C~~C~k~F~~~~~L~~H~~~-h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H  183 (266)
                      ...+|.|..|++.|.+...|..|++. |.+..+.        .......|.|..|+            +.|.....|..|
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~--------~~~~~~~~~C~~C~------------~~f~~~~~l~~H   81 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ--------NNHVCYWEECPREG------------KSFKAKYKLVNH   81 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTC--------SSCCCCBTTCTTSS------------CCCSSHHHHHHH
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCccc--------CCccccccCCCCcc------------cccCCHHHHHHH
Confidence            45678888888888888888888887 5432210        00111227899999            899999999999


Q ss_pred             hhhhcCCCCeeccc--ccccccchhhHHHHHHHh--CCCEEe-E--cCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          184 YKRKHGLKPFMCRK--CGKFLAVKGDWRTHEKNC--GKRWLC-V--CGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       184 ~~~h~~~kp~~C~~--C~k~f~~~~~L~~H~~~~--~k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      +++|++++||.|.+  |++.|.....|..|+++|  ++||.| .  |++.|.....|..|+++ |++++||.|+
T Consensus        82 ~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~~c~  154 (155)
T 2rpc_A           82 IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPSS  154 (155)
T ss_dssp             THHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTT-TTSCCCSCSC
T ss_pred             HHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHH-hcCCCCCCCC
Confidence            99999999999998  999999999999999976  789999 7  99999999999999998 8999999996

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.90  E-value=8.5e-25  Score=157.82  Aligned_cols=111  Identities=23%  Similarity=0.392  Sum_probs=69.7

Q ss_pred             CCCCCCCCCc--ccccccccCCCchhhhhhcCCCceecc--cccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccC
Q 037179           76 SSNNPSAKGN--ANVAAAKQYWIPTPEQILIGFTHFSCH--VCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAIL  151 (266)
Q Consensus        76 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~  151 (266)
                      +++++|.|..  |++.|.....|..|+++|.++++|.|.  .|++.|.....|..|+++|.++++               
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~---------------   66 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP---------------   66 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCC---------------
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCC---------------
Confidence            3455666665  666666666666666666666666666  466666666666666666643322               


Q ss_pred             CcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeec--ccccccccchhhHHHHHHH
Q 037179          152 GIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMC--RKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       152 ~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C--~~C~k~f~~~~~L~~H~~~  214 (266)
                       |.|..|+            +.|.....|..|+++|++++||.|  +.||+.|.....|..|+++
T Consensus        67 -~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           67 -FQCKTCQ------------RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             -EECTTTC------------CEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             -ccCCccC------------chhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence             6666666            566666666666666666666666  5566666666666666554

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.90  E-value=2.7e-24  Score=156.37  Aligned_cols=114  Identities=25%  Similarity=0.486  Sum_probs=91.5

Q ss_pred             CCCceecc--cccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHH
Q 037179          105 GFTHFSCH--VCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQT  182 (266)
Q Consensus       105 ~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~  182 (266)
                      ++++|.|.  .|++.|.....|..|+++| +..+                |.|..|+            +.|.....|..
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~----------------~~C~~C~------------~~f~~~~~l~~   52 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRV----------------HVCAECG------------KAFVESSKLKR   52 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCC----------------EECTTTC------------CEESSHHHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCC----------------eECCCCC------------chhCCHHHHHH
Confidence            35678888  7999999999999998888 3322                8899998            88889999999


Q ss_pred             HhhhhcCCCCeeccc--ccccccchhhHHHHHHHh--CCCEEe-E--cCccccCchHHHHHHHhhCCCCCCcc
Q 037179          183 HYKRKHGLKPFMCRK--CGKFLAVKGDWRTHEKNC--GKRWLC-V--CGSDFKHKRSLKDHIKAFGSGHGPFS  248 (266)
Q Consensus       183 H~~~h~~~kp~~C~~--C~k~f~~~~~L~~H~~~~--~k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~~p~~  248 (266)
                      |+++|++++||.|..  |++.|.....|..|+++|  ++||.| .  |++.|.+.+.|..|+++ |+++++++
T Consensus        53 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~-H~~~k~~q  124 (124)
T 1ubd_C           53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT-HAKAKNNQ  124 (124)
T ss_dssp             HGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHH-HC------
T ss_pred             HHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHH-HcccccCC
Confidence            999999999999975  999999999999999875  788999 6  99999999999999998 78888763

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=4e-24  Score=155.33  Aligned_cols=114  Identities=20%  Similarity=0.345  Sum_probs=103.5

Q ss_pred             CCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCC
Q 037179           76 SSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPC  155 (266)
Q Consensus        76 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C  155 (266)
                      +++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|.....|..|++.|...             .....|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-------------~~~~~~~C   69 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN-------------RSEQVFTC   69 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCC-------------SCCCCEEC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcC-------------CCCCCeEC
Confidence            57789999999999999999999999999999999999999999999999999865211             11123999


Q ss_pred             CCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHH
Q 037179          156 YCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       156 ~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      .+|+            +.|.....|..|+++|++++||.|.+|++.|.....|..|++.
T Consensus        70 ~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  116 (124)
T 2dlq_A           70 SVCQ------------ETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK  116 (124)
T ss_dssp             SSSC------------CEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCC------------CccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHH
Confidence            9999            9999999999999999999999999999999999999999984

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=1.4e-23  Score=151.45  Aligned_cols=107  Identities=26%  Similarity=0.561  Sum_probs=60.0

Q ss_pred             CCCceeccc--ccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCC--CCCCCccCCCCCCCCCCCCChhhH
Q 037179          105 GFTHFSCHV--CFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCY--CCAEGCKNSINHPKAKPLKDFRTL  180 (266)
Q Consensus       105 ~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~~~~~k~f~~~~~l  180 (266)
                      ++++|.|..  |++.|.....|..|+++|.++.+                |.|.  .|+            +.|.....|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C~~~~C~------------~~f~~~~~l   54 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP----------------YQCDFKDCE------------RRFSRSDQL   54 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCC----------------EECCSTTCC------------CEESSHHHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCC----------------ccCCCCCCc------------CccCCHHHH
Confidence            445556654  66666666666666555543221                5555  455            555555555


Q ss_pred             HHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe---EcCccccCchHHHHHHHh
Q 037179          181 QTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC---VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       181 ~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C---~C~k~F~~~~~L~~H~~~  239 (266)
                      ..|+++|+++++|.|.+|++.|.....|..|+++|  ++||.|   .|++.|.+.+.|..|+++
T Consensus        55 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             HHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence            55555555555555555555555555555555543  455555   355555555555555554

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.88  E-value=1.1e-23  Score=153.07  Aligned_cols=113  Identities=20%  Similarity=0.278  Sum_probs=100.6

Q ss_pred             CCCCCCC--cccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCC
Q 037179           78 NNPSAKG--NANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPC  155 (266)
Q Consensus        78 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C  155 (266)
                      .++|.|+  .|++.|.....|..|+++| ++++|.|..|++.|.....|..|+++|.++++                |.|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C   65 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP----------------FQC   65 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC----------------EEC
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC----------------eeC
Confidence            4679999  8999999999999999999 89999999999999999999999999976543                999


Q ss_pred             CC--CCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecc--cccccccchhhHHHHHHHh--CCCE
Q 037179          156 YC--CAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCR--KCGKFLAVKGDWRTHEKNC--GKRW  219 (266)
Q Consensus       156 ~~--C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~--~C~k~f~~~~~L~~H~~~~--~k~~  219 (266)
                      ..  |+            +.|.....|..|+++|++++||.|.  .|++.|.....|..|+++|  ++++
T Consensus        66 ~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           66 TFEGCG------------KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             CSTTCC------------CEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CCCCCc------------CccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            86  99            9999999999999999999999995  5999999999999999986  4554

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=5.6e-24  Score=160.79  Aligned_cols=121  Identities=21%  Similarity=0.288  Sum_probs=109.6

Q ss_pred             cCCCCCCCCCCCcccccccccCCCchhhhh-hcCCCc--------eecccccccccChhhHHhhhhhcCCCCCCCCCCcC
Q 037179           73 YSHSSNNPSAKGNANVAAAKQYWIPTPEQI-LIGFTH--------FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLK  143 (266)
Q Consensus        73 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~k~--------~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~  143 (266)
                      +.......|.|..|++.|.....|..|+++ |.+..+        |.|..|++.|.....|..|+++|+++++       
T Consensus        18 ~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-------   90 (155)
T 2rpc_A           18 WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP-------   90 (155)
T ss_dssp             BCCTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCS-------
T ss_pred             eechhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCc-------
Confidence            345567789999999999999999999997 777665        8999999999999999999999975543       


Q ss_pred             CCCCCccCCcCCCC--CCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeeccc--ccccccchhhHHHHHHHh--CC
Q 037179          144 GTQPRAILGIPCYC--CAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRK--CGKFLAVKGDWRTHEKNC--GK  217 (266)
Q Consensus       144 ~~~~~~~~~~~C~~--C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~--C~k~f~~~~~L~~H~~~~--~k  217 (266)
                               |.|..  |+            +.|.....|..|+++|++++||.|.+  |++.|.....|..|+++|  ++
T Consensus        91 ---------~~C~~~~C~------------~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k  149 (155)
T 2rpc_A           91 ---------FPCPFPGCG------------KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK  149 (155)
T ss_dssp             ---------EECSCTTTC------------CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCC
T ss_pred             ---------ccCCcCCCC------------CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCC
Confidence                     99998  99            99999999999999999999999997  999999999999999976  78


Q ss_pred             CEEe
Q 037179          218 RWLC  221 (266)
Q Consensus       218 ~~~C  221 (266)
                      ||.|
T Consensus       150 ~~~c  153 (155)
T 2rpc_A          150 SGPS  153 (155)
T ss_dssp             CSCS
T ss_pred             CCCC
Confidence            9987

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=1.7e-20  Score=134.41  Aligned_cols=97  Identities=19%  Similarity=0.207  Sum_probs=80.9

Q ss_pred             ccCCCchhhhhhcCCCceecccccccccChhhHHhhhhh--cCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCC
Q 037179           92 KQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWG--HGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHP  169 (266)
Q Consensus        92 ~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~--h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~  169 (266)
                      ....|..|+++|++++||.|..|++.|.....|..|+++  |.+..+               .+.|..|+          
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~---------------~~~C~~C~----------   57 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN---------------HETDNNNP----------   57 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSC---------------CCCCCCCC----------
T ss_pred             cchhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCC---------------CccCCCCC----------
Confidence            456799999999999999999999999999999999998  533221               15599999          


Q ss_pred             CCCCC--CChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          170 KAKPL--KDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       170 ~~k~f--~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                        +.|  .....|..|+++|++++||.|.+|++.|.....|..|++++
T Consensus        58 --~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h  103 (115)
T 2dmi_A           58 --KRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT  103 (115)
T ss_dssp             --SCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHT
T ss_pred             --cccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHh
Confidence              666  88889999999999999999998888888877777777764

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.80  E-value=7.8e-20  Score=128.95  Aligned_cols=85  Identities=21%  Similarity=0.409  Sum_probs=81.0

Q ss_pred             CcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCcccc
Q 037179          152 GIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFK  228 (266)
Q Consensus       152 ~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~  228 (266)
                      .|.|..|+            +.|.....|..|+++|+++++|.|.+|++.|.....|..|+++|  +++|.| +|++.|.
T Consensus        17 ~~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   84 (106)
T 2ee8_A           17 EFICKFCG------------RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC   84 (106)
T ss_dssp             CCBCSSSC------------CBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCS
T ss_pred             CeECCCCC------------CccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCccc
Confidence            49999999            89999999999999999999999999999999999999999986  789999 9999999


Q ss_pred             CchHHHHHHHhhCCCCCCccC
Q 037179          229 HKRSLKDHIKAFGSGHGPFSR  249 (266)
Q Consensus       229 ~~~~L~~H~~~~H~~~~p~~C  249 (266)
                      +...|..|+++ |.+++||.+
T Consensus        85 ~~~~L~~H~~~-H~~~~~~~~  104 (106)
T 2ee8_A           85 QSRTLAVHKTL-HMQTSSPTA  104 (106)
T ss_dssp             SHHHHHHHHHH-TTSCCCCCC
T ss_pred             CHHHHHHHHHH-hCCCCCCcC
Confidence            99999999998 899999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=6.1e-20  Score=129.81  Aligned_cols=83  Identities=18%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccC
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKH  229 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~  229 (266)
                      |.|..|+            +.|.....|..|+++|  .+||.|.+|++.|.....|..|++ |  ++||.| +|++.|.+
T Consensus        17 ~~C~~C~------------~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~   81 (107)
T 1wjp_A           17 YQCRLCN------------AKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKS   81 (107)
T ss_dssp             CBCTTTC------------CBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSS
T ss_pred             eECCCCC------------CccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCC
Confidence            9999999            9999999999999999  479999999999999999999996 5  789999 99999999


Q ss_pred             chHHHHHHHhhCCCCCCccCC
Q 037179          230 KRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       230 ~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      ...|..|++.+|++++||.|.
T Consensus        82 ~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           82 SFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHHHcCCCCCCCCC
Confidence            999999998569999999885

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.79  E-value=1.7e-19  Score=127.23  Aligned_cols=92  Identities=20%  Similarity=0.286  Sum_probs=74.8

Q ss_pred             CCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCC
Q 037179           76 SSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPC  155 (266)
Q Consensus        76 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C  155 (266)
                      ..+++|.|..|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|.++++                |.|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C   76 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP----------------FKC   76 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCT----------------TSC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCC----------------eEC
Confidence            4567788888888888888888888888888888888888888888888888888865433                888


Q ss_pred             CCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeec
Q 037179          156 YCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMC  195 (266)
Q Consensus       156 ~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C  195 (266)
                      ..|+            +.|.....|..|+++|++++||.+
T Consensus        77 ~~C~------------~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           77 QECG------------KGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SSSC------------CCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCcC------------CcccCHHHHHHHHHHhCCCCCCcC
Confidence            8888            778888888888888888888754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=4.1e-19  Score=122.88  Aligned_cols=82  Identities=22%  Similarity=0.481  Sum_probs=77.6

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccC
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKH  229 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~  229 (266)
                      |.|..|+            +.|.....|..|+++|+++++|.|.+|++.|.....|..|+++|  +++|.| +|++.|..
T Consensus         9 ~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            9 HKCEVCG------------KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCBTTTT------------BCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred             eECCCCC------------CccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence            9999999            99999999999999999999999999999999999999999986  789999 99999999


Q ss_pred             chHHHHHHHhhCCCCCCc
Q 037179          230 KRSLKDHIKAFGSGHGPF  247 (266)
Q Consensus       230 ~~~L~~H~~~~H~~~~p~  247 (266)
                      ...|..|+++ |+++++.
T Consensus        77 ~~~l~~H~~~-h~~~~~p   93 (96)
T 2dmd_A           77 SSQLTVHLRS-HTGDSGP   93 (96)
T ss_dssp             HHHHHHHHTT-CCSCCCC
T ss_pred             HHHHHHHHHH-hcCCCCC
Confidence            9999999998 6777654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.77  E-value=4.1e-19  Score=121.31  Aligned_cols=80  Identities=26%  Similarity=0.549  Sum_probs=74.3

Q ss_pred             cCCC--CCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccc
Q 037179          153 IPCY--CCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDF  227 (266)
Q Consensus       153 ~~C~--~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F  227 (266)
                      |.|.  .|+            +.|.....|..|+++|.++++|.|..|++.|.....|..|+++|  ++||.| .|++.|
T Consensus         5 ~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   72 (90)
T 1a1h_A            5 YACPVESCD------------RRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF   72 (90)
T ss_dssp             EECCSSSCC------------CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             eECCCCCCC------------CccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchh
Confidence            8998  599            89999999999999999999999999999999999999999975  899999 999999


Q ss_pred             cCchHHHHHHHhhCCCCC
Q 037179          228 KHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       228 ~~~~~L~~H~~~~H~~~~  245 (266)
                      ...+.|..|+++ |++++
T Consensus        73 ~~~~~l~~H~~~-H~~~k   89 (90)
T 1a1h_A           73 ARSDERKRHTKI-HLRQK   89 (90)
T ss_dssp             SSHHHHHHHHGG-GGC--
T ss_pred             CCHHHHHHHHHH-hcccC
Confidence            999999999998 78775

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.77  E-value=3.6e-19  Score=119.39  Aligned_cols=78  Identities=32%  Similarity=0.607  Sum_probs=73.0

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccC
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKH  229 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~  229 (266)
                      |.|..|+            +.|.....|..|+++|.+++||.|..|++.|.....|..|+++|  +++|.| .|++.|.+
T Consensus         2 ~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   69 (82)
T 2kmk_A            2 FDCKICG------------KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQ   69 (82)
T ss_dssp             EECSSSC------------CEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESS
T ss_pred             ccCCCCc------------ccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCC
Confidence            7899999            89999999999999999999999999999999999999999975  899999 99999999


Q ss_pred             chHHHHHHHhhCCC
Q 037179          230 KRSLKDHIKAFGSG  243 (266)
Q Consensus       230 ~~~L~~H~~~~H~~  243 (266)
                      .+.|..|+++ |+|
T Consensus        70 ~~~l~~H~~~-H~g   82 (82)
T 2kmk_A           70 SSNLITHSRK-HTG   82 (82)
T ss_dssp             HHHHHHHHHH-HC-
T ss_pred             hHHHHHHHHh-hCC
Confidence            9999999998 554

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=2.3e-19  Score=126.86  Aligned_cols=93  Identities=13%  Similarity=0.138  Sum_probs=76.7

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCCh
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDF  177 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~  177 (266)
                      .++++|.++++|.|..|++.|.....|..|+++|.+                  .|.|..|+            +.|...
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~------------------~~~C~~C~------------~~f~~~   55 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN------------------AAVCPYCS------------LRFFSP   55 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHH------------------SBCCTTTC------------CCBSSH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCCC------------------CccCCCCC------------CccCCH
Confidence            456677888888888888888888888888888731                  18888888            888888


Q ss_pred             hhHHHHhhhhcCCCCeecccccccccchhhHHHHHH-Hh--CCCEEe
Q 037179          178 RTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK-NC--GKRWLC  221 (266)
Q Consensus       178 ~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~-~~--~k~~~C  221 (266)
                      ..|..|++ |++++||.|.+|++.|.....|..|++ +|  +++|.|
T Consensus        56 ~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~  101 (107)
T 1wjp_A           56 ELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPT  101 (107)
T ss_dssp             HHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCC
T ss_pred             HHHHHHHH-cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCC
Confidence            88999985 888899999999999999999999987 54  677765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=2.6e-19  Score=123.90  Aligned_cols=57  Identities=16%  Similarity=0.229  Sum_probs=30.2

Q ss_pred             CCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcC
Q 037179           76 SSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus        76 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      +++++|.|..|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|.
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   60 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS   60 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhC
Confidence            344455555555555555555555555555555555555555555555555555553

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.76  E-value=3.7e-19  Score=111.39  Aligned_cols=55  Identities=24%  Similarity=0.544  Sum_probs=51.3

Q ss_pred             CCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          190 LKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       190 ~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      ||||.|.+||++|...+.|..|+++|  ++||.| +||++|.+.+.|.+|+++ |+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~-Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV-HQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGG-GSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCc-cCCCC
Confidence            79999999999999999999999976  899999 999999999999999998 88874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.1e-18  Score=120.35  Aligned_cols=81  Identities=31%  Similarity=0.631  Sum_probs=75.5

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--C--CCEEe-EcCccc
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--G--KRWLC-VCGSDF  227 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~--k~~~C-~C~k~F  227 (266)
                      |.|..|+            +.|.....|..|+++|++++||.|.+|++.|.....|..|++++  +  ++|.| .|++.|
T Consensus         8 ~~C~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            8 VACEICG------------KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             EECSSSC------------CEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             eECCCCC------------CccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            9999999            89999999999999999999999999999999999999999986  3  89999 999999


Q ss_pred             cCchHHHHHHHhhCCCCC
Q 037179          228 KHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       228 ~~~~~L~~H~~~~H~~~~  245 (266)
                      .....|..|++..|+++.
T Consensus        76 ~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           76 SRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             SSHHHHHHHHHHTSCCCS
T ss_pred             CCHHHHHHHHHHhcCCCC
Confidence            999999999986588753

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=9.5e-20  Score=130.46  Aligned_cols=94  Identities=15%  Similarity=0.122  Sum_probs=73.9

Q ss_pred             hhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhh--hcCCCCee-ccc
Q 037179          121 YNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKR--KHGLKPFM-CRK  197 (266)
Q Consensus       121 ~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~--h~~~kp~~-C~~  197 (266)
                      ...|..|+++|+++++                |.|..|+            +.|.....|..|+++  |.+++++. |.+
T Consensus         4 ~~~l~~H~~~H~~~~~----------------~~C~~C~------------k~f~~~~~L~~H~~~~~h~~~~~~~~C~~   55 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASK----------------FRCKDCS------------AAYDTLVELTVHMNETGHYRDDNHETDNN   55 (115)
T ss_dssp             CCCCCCCCCCCCCCCS----------------EEBSSSS------------CEESSHHHHHHHHHHTCCCBCSCCCCCCC
T ss_pred             chhhhhheeeeCCCCC----------------EECCccC------------chhcCHHHHHHHHHHhCccccCCCccCCC
Confidence            4567778888865443                8888888            888888888888888  77777654 888


Q ss_pred             ccccc--cchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCC
Q 037179          198 CGKFL--AVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGS  242 (266)
Q Consensus       198 C~k~f--~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~  242 (266)
                      |++.|  .....|..|+++|  ++||.| +|++.|...+.|..|+++||.
T Consensus        56 C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           56 NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             CCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            88888  7888888888865  788888 888888888888888888543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=8.3e-19  Score=118.73  Aligned_cols=77  Identities=21%  Similarity=0.423  Sum_probs=71.4

Q ss_pred             hHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--C----CCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          179 TLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--G----KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       179 ~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~----k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      .|..|+++|++++||.|.+|++.|.....|..|++++  +    ++|.| .|++.|.....|..|+++ |.+++++.|+.
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~~~~~   80 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEGEN   80 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHH-CCCCCSCCCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHH-ccCCCCcccCC
Confidence            3568999999999999999999999999999999864  2    78999 999999999999999998 89999999999


Q ss_pred             CCccc
Q 037179          252 DGVEV  256 (266)
Q Consensus       252 C~k~f  256 (266)
                      |+.+|
T Consensus        81 ~~~~~   85 (86)
T 1x6h_A           81 SGPSS   85 (86)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            99876

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.6e-18  Score=123.04  Aligned_cols=83  Identities=27%  Similarity=0.451  Sum_probs=42.9

Q ss_pred             hcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHH
Q 037179          103 LIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQT  182 (266)
Q Consensus       103 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~  182 (266)
                      |+++++|.| .|++.|.....|..|+++|.++++                |.|..|+            +.|.....|..
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C~~C~------------~~f~~~~~l~~   55 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP----------------YGCGVCG------------KKFKMKHHLVG   55 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCS----------------EECTTTS------------CEESSSHHHHH
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcC----------------ccCCCCC------------cccCCHHHHHH
Confidence            445555555 555555555555555555533221                4555555            44555555555


Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHH
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      |+++|+++++|.|.+|++.|.....|..|+++
T Consensus        56 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           56 HMKIHTGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             HHTTTCCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             HHHHcCCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence            55555555555555555555555555555544

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.74  E-value=4.1e-19  Score=121.30  Aligned_cols=82  Identities=27%  Similarity=0.538  Sum_probs=54.2

Q ss_pred             CCceecc--cccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHH
Q 037179          106 FTHFSCH--VCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTH  183 (266)
Q Consensus       106 ~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H  183 (266)
                      ++||.|.  .|++.|.....|..|+++|.++.+                |.|..|+            +.|.....|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C~~C~------------~~f~~~~~l~~H   53 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP----------------FQCRICM------------RNFSRSDHLTTH   53 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCC----------------EECTTTC------------CEESCHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCC----------------ccCCCCC------------cccCCHHHHHHH
Confidence            4566666  467777666667777666643322                6666766            666666777777


Q ss_pred             hhhhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          184 YKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       184 ~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      +++|++++||.|.+|++.|.....|..|+++|
T Consensus        54 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   85 (90)
T 1a1h_A           54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH   85 (90)
T ss_dssp             HHHHHCCCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             HHHcCCCCCccCCCCCchhCCHHHHHHHHHHh
Confidence            77777777777777777777777777777654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.74  E-value=2e-18  Score=115.70  Aligned_cols=80  Identities=29%  Similarity=0.609  Sum_probs=65.5

Q ss_pred             ceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhh
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRK  187 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h  187 (266)
                      ||.|..|++.|.....|..|+++|.++.+                |.|..|+            +.|.....|..|+++|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C~~C~------------~~f~~~~~l~~H~~~h   52 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP----------------YPCQYCG------------KRFHQKSDMKKHTFIH   52 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC----------------EECSSSC------------CEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCC----------------eeCCcCC------------hhhCCHHHHHHHHHHh
Confidence            57888888888888888888888754332                7888888            7788888888888888


Q ss_pred             cCCCCeecccccccccchhhHHHHHHHh
Q 037179          188 HGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       188 ~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      ++++||.|..|++.|.....|..|+++|
T Consensus        53 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           53 TGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             HTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             cCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            8888888888888888888888888865

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.74  E-value=4.7e-19  Score=110.95  Aligned_cols=58  Identities=17%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             CCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179           77 SNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus        77 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      .++||.|.+|++.|.....|..|+++|+|++||.|.+||+.|.+...|..|+++|+|+
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            3789999999999999999999999999999999999999999999999999999875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=2.9e-18  Score=114.18  Aligned_cols=69  Identities=28%  Similarity=0.546  Sum_probs=64.6

Q ss_pred             cCCCCeeccc--ccccccchhhHHHHHH-Hh--CCCEEe-E--cCccccCchHHHHHHHhhCCCCCCccCCCCCcccc
Q 037179          188 HGLKPFMCRK--CGKFLAVKGDWRTHEK-NC--GKRWLC-V--CGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVL  257 (266)
Q Consensus       188 ~~~kp~~C~~--C~k~f~~~~~L~~H~~-~~--~k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~  257 (266)
                      +++++|.|..  |++.|.....|..|++ +|  +++|.| .  |++.|.....|..|+++ |++++||.|++|+++|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHH-HHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHH-hCCCCCeeCCCCCCCCC
Confidence            5789999987  9999999999999998 55  899999 8  99999999999999998 79999999999999994

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=6.4e-18  Score=116.55  Aligned_cols=81  Identities=26%  Similarity=0.549  Sum_probs=46.8

Q ss_pred             CCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHh
Q 037179          105 GFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHY  184 (266)
Q Consensus       105 ~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~  184 (266)
                      ++++|.|..|++.|.....|..|+++|.++.+                |.|..|+            +.|.....|..|+
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C~~C~------------~~f~~~~~l~~H~   55 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKP----------------YSCPVCG------------LRFKRKDRMSYHV   55 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCS----------------EECSSSC------------CEESCHHHHHHHH
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCC----------------CcCCCCC------------CccCCHHHHHHHH
Confidence            44555555555555555555555555543222                5555555            5555555666666


Q ss_pred             hhhcCC--CCeecccccccccchhhHHHHHH
Q 037179          185 KRKHGL--KPFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       185 ~~h~~~--kp~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      ++|+++  +||.|.+|++.|.....|..|++
T Consensus        56 ~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           56 RSHDGSVGKPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             HHHCCCCCSSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             HHhcCCCCCceECCCccchhCCHHHHHHHHH
Confidence            665554  56666666666666666666654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=4.5e-18  Score=120.68  Aligned_cols=77  Identities=27%  Similarity=0.571  Sum_probs=70.9

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccC
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKH  229 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~  229 (266)
                      |.| .|+            +.|.....|..|+++|.++++|.|.+|++.|.....|..|+++|  +++|.| +|++.|..
T Consensus        11 ~~C-~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (110)
T 2csh_A           11 YPC-QCG------------KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW   77 (110)
T ss_dssp             EEC-TTS------------CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred             Eec-cCC------------CccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence            899 899            88999999999999999999999999999999999999999976  789999 99999999


Q ss_pred             chHHHHHHHhhCC
Q 037179          230 KRSLKDHIKAFGS  242 (266)
Q Consensus       230 ~~~L~~H~~~~H~  242 (266)
                      ...|..|+++||.
T Consensus        78 ~~~l~~H~~~~~~   90 (110)
T 2csh_A           78 RDSFHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccc
Confidence            9999999998653

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.71  E-value=2.6e-17  Score=114.50  Aligned_cols=80  Identities=25%  Similarity=0.476  Sum_probs=73.4

Q ss_pred             CCcCCCC--CCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecc--cccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          151 LGIPCYC--CAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCR--KCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       151 ~~~~C~~--C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~--~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      ..|.|..  |+            +.|.....|..|+++|+++++|.|.  .|++.|.....|..|+++|  ++||.| +|
T Consensus        14 ~~~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   81 (100)
T 2ebt_A           14 RIHYCDYPGCT------------KVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC   81 (100)
T ss_dssp             CCEECCSSSCC------------CEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSS
T ss_pred             cceEcCCCCCC------------CcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCC
Confidence            3488996  99            9999999999999999999999996  6999999999999999976  799999 99


Q ss_pred             CccccCchHHHHHHHhhCCC
Q 037179          224 GSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       224 ~k~F~~~~~L~~H~~~~H~~  243 (266)
                      ++.|.....|..|+++ |++
T Consensus        82 ~~~f~~~~~l~~H~~~-H~~  100 (100)
T 2ebt_A           82 NRSFSRSDHLALHMKR-HQN  100 (100)
T ss_dssp             CCBCSSHHHHHHHHHH-HCC
T ss_pred             cCccCCHHHHHHHHHH-hCC
Confidence            9999999999999998 543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=6.1e-18  Score=117.67  Aligned_cols=66  Identities=18%  Similarity=0.285  Sum_probs=60.7

Q ss_pred             hcCCCCeecccccccccchhhHHHHHH-Hh-----CCCEEe-EcCccccCchHHHHH-HHhhCCCCCCccCCCCC
Q 037179          187 KHGLKPFMCRKCGKFLAVKGDWRTHEK-NC-----GKRWLC-VCGSDFKHKRSLKDH-IKAFGSGHGPFSRPFDG  253 (266)
Q Consensus       187 h~~~kp~~C~~C~k~f~~~~~L~~H~~-~~-----~k~~~C-~C~k~F~~~~~L~~H-~~~~H~~~~p~~C~~C~  253 (266)
                      -+|++||.|.+||+.|...+.|..|++ +|     ++||.| +||+.|..++.|..| +++ |+|++||.|+++.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~-Htgekpy~C~~~~   86 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY-HPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHT-STTCCCEEEEECC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHh-cCCCCCeeCCccc
Confidence            368999999999999999999999997 46     789999 999999999999999 777 8999999999854

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.70  E-value=7.9e-19  Score=128.28  Aligned_cols=71  Identities=18%  Similarity=0.324  Sum_probs=63.9

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHhCCCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      +.|.....|..|+ .|++++||.|.+||+.|.....|..|+++|++||.| .|++.|.+.+.|..|+++ |+|.
T Consensus        55 ~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~~l~~H~~~-h~~~  126 (129)
T 2wbt_A           55 QLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVCK-KHNI  126 (129)
T ss_dssp             GGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHHHHHHHHHH-TTCC
T ss_pred             cccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHHHHHHHHHH-HCCc
Confidence            4456677788887 688999999999999999999999999999999999 999999999999999999 5554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.68  E-value=4e-17  Score=111.08  Aligned_cols=75  Identities=25%  Similarity=0.554  Sum_probs=71.1

Q ss_pred             cCCCC--CCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecc--cccccccchhhHHHHHHHh--CCCEEe-EcCc
Q 037179          153 IPCYC--CAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCR--KCGKFLAVKGDWRTHEKNC--GKRWLC-VCGS  225 (266)
Q Consensus       153 ~~C~~--C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~--~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k  225 (266)
                      |.|..  |+            +.|.....|..|+++|.+++||.|.  .|++.|.....|..|+++|  ++||.| .|++
T Consensus         6 ~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   73 (89)
T 2wbs_A            6 HTCDYAGCG------------KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDR   73 (89)
T ss_dssp             EECCSTTTC------------CEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSC
T ss_pred             eeCCCCCCC------------CcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCc
Confidence            88999  99            8999999999999999999999997  6999999999999999975  899999 9999


Q ss_pred             cccCchHHHHHHHh
Q 037179          226 DFKHKRSLKDHIKA  239 (266)
Q Consensus       226 ~F~~~~~L~~H~~~  239 (266)
                      .|...+.|..|+++
T Consensus        74 ~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           74 AFSRSDHLALHMKR   87 (89)
T ss_dssp             EESSHHHHHHHGGG
T ss_pred             ccCCHHHHHHHHHh
Confidence            99999999999998

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.68  E-value=3e-18  Score=116.63  Aligned_cols=77  Identities=21%  Similarity=0.383  Sum_probs=72.7

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh-CCCEEe-EcCccccCc
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC-GKRWLC-VCGSDFKHK  230 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~-~k~~~C-~C~k~F~~~  230 (266)
                      |.|..|+            +.|.....|..|+++|++++||.|..|++.|.....|..|++++ +.+|.| .|++.|...
T Consensus         4 ~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~   71 (88)
T 1llm_C            4 FQCRICM------------RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKN   71 (88)
T ss_dssp             EECTTTC------------CEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCC------------CccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            8999999            89999999999999999999999999999999999999999975 688999 999999999


Q ss_pred             hHHHHHHHhhC
Q 037179          231 RSLKDHIKAFG  241 (266)
Q Consensus       231 ~~L~~H~~~~H  241 (266)
                      ..|..|++.+|
T Consensus        72 ~~L~~H~~~~h   82 (88)
T 1llm_C           72 YHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhhHHHHHHHH
Confidence            99999999866

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.68  E-value=4.8e-17  Score=110.67  Aligned_cols=82  Identities=24%  Similarity=0.547  Sum_probs=71.8

Q ss_pred             CCceeccc--ccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCC--CCCCCccCCCCCCCCCCCCChhhHH
Q 037179          106 FTHFSCHV--CFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCY--CCAEGCKNSINHPKAKPLKDFRTLQ  181 (266)
Q Consensus       106 ~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~~~~~k~f~~~~~l~  181 (266)
                      .++|.|..  |++.|.....|..|+++|.++.+                |.|.  .|+            +.|.....|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C~~~~C~------------~~f~~~~~l~   54 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP----------------YHCDWDGCG------------WKFARSDELT   54 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCC----------------EECCSTTTC------------CEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC----------------cCCCCCCCC------------CccCCHHHHH
Confidence            45788988  99999999999999998865433                8886  598            8899999999


Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|
T Consensus        55 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           55 RHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             HHHHHHHCCCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             HHHHHcCCCCCccCCCCCcccCCHHHHHHHHHhh
Confidence            9999999999999999999999999999998865

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.67  E-value=5.5e-17  Score=109.27  Aligned_cols=76  Identities=22%  Similarity=0.399  Sum_probs=71.5

Q ss_pred             cCC--CCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeeccc--ccccccchhhHHHHHHHhCCCEEe-E---cC
Q 037179          153 IPC--YCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRK--CGKFLAVKGDWRTHEKNCGKRWLC-V---CG  224 (266)
Q Consensus       153 ~~C--~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~--C~k~f~~~~~L~~H~~~~~k~~~C-~---C~  224 (266)
                      |.|  ..|+            +.|.....|..|+++|++++||.|..  |++.|.....|..|+++|.. |.| .   |+
T Consensus         2 ~~C~~~~C~------------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~C~~~~~C~   68 (85)
T 2j7j_A            2 YVCHFENCG------------KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-YPCKKDDSCS   68 (85)
T ss_dssp             EECCSTTCC------------CEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-EECCSCSSCC
T ss_pred             ccCCCCCCC------------cccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-CCCCCCCCCC
Confidence            789  8899            89999999999999999999999988  99999999999999998755 999 8   99


Q ss_pred             ccccCchHHHHHHHhhC
Q 037179          225 SDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       225 k~F~~~~~L~~H~~~~H  241 (266)
                      +.|...+.|..|+++||
T Consensus        69 ~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           69 FVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEESSHHHHHHHHHHCC
T ss_pred             CccCCHHHHHHHHHhcC
Confidence            99999999999999854

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=2.5e-17  Score=114.35  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=72.7

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeeccccccccc-chhhHHHHHHHh---CCCEEe-EcCccccCchHHHHHHHhhCCCCCC
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLA-VKGDWRTHEKNC---GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGP  246 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~-~~~~L~~H~~~~---~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p  246 (266)
                      ..+.....+..|+++|+++++|.|.+|++.|. ....|..|+++|   ++||.| +|++.|.++..|..|+++ |++++|
T Consensus         4 ~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~-h~~~kp   82 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA-EHSAKP   82 (98)
T ss_dssp             CCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHH-HSCSCS
T ss_pred             CCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHH-HcCCCC
Confidence            34555667889999999999999999999999 999999999975   689999 999999999999999998 678998


Q ss_pred             ccCCCCCccc
Q 037179          247 FSRPFDGVEV  256 (266)
Q Consensus       247 ~~C~~C~k~f  256 (266)
                      +.-+......
T Consensus        83 ~~~~~~~~~~   92 (98)
T 2gqj_A           83 SDAEASEGGE   92 (98)
T ss_dssp             SCCCCCCCCC
T ss_pred             CCCCCCcccC
Confidence            7765544433

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.67  E-value=1.1e-16  Score=111.28  Aligned_cols=82  Identities=23%  Similarity=0.496  Sum_probs=52.7

Q ss_pred             CCceeccc--ccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCC--CCCCCccCCCCCCCCCCCCChhhHH
Q 037179          106 FTHFSCHV--CFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCY--CCAEGCKNSINHPKAKPLKDFRTLQ  181 (266)
Q Consensus       106 ~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~~~~~k~f~~~~~l~  181 (266)
                      .++|.|..  |++.|.....|..|+++|.++++                |.|.  .|+            +.|.....|.
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C~~~~C~------------~~f~~~~~l~   64 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP----------------YKCTWEGCD------------WRFARSDELT   64 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC----------------EECCSSSCC------------CEESSHHHHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC----------------eeCCCCCCC------------CccCCHHHHH
Confidence            34566664  66666666666666666643322                5664  466            6666666666


Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|
T Consensus        65 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           65 RHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             HHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            7766777777777777777777777777777665

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=9e-17  Score=110.97  Aligned_cols=77  Identities=14%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecccccccc-cchhhHHHHHHHh-CCCEEe-EcCccccCchHHHHH-HHhhCCCCCCc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKCGKFL-AVKGDWRTHEKNC-GKRWLC-VCGSDFKHKRSLKDH-IKAFGSGHGPF  247 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f-~~~~~L~~H~~~~-~k~~~C-~C~k~F~~~~~L~~H-~~~~H~~~~p~  247 (266)
                      ..|.....|..|++.|.+++||.|++|++.| .....|..|+++| ++||.| +|++.|..++.|..| +++ |+++..|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~-H~~~p~~   92 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMAN-HNSLPSG   92 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHH-TCCCSSC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHh-cCCCCCC
Confidence            5677788999999999999999999999999 9999999999986 789999 999999999999999 776 7876555


Q ss_pred             cC
Q 037179          248 SR  249 (266)
Q Consensus       248 ~C  249 (266)
                      .+
T Consensus        93 ~~   94 (96)
T 2ctd_A           93 PS   94 (96)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=4e-17  Score=108.10  Aligned_cols=64  Identities=27%  Similarity=0.596  Sum_probs=59.7

Q ss_pred             hhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccC
Q 037179          185 KRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSR  249 (266)
Q Consensus       185 ~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C  249 (266)
                      ..+.+++||.|.+|++.|.....|..|+++|  ++||.| +|++.|.....|..|+++ |++++||.|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV-HTGSGPSSG   77 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGG-SCCCCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHH-hCCCCCCCC
Confidence            3467889999999999999999999999986  789999 999999999999999998 899999998

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=3.4e-17  Score=108.45  Aligned_cols=68  Identities=22%  Similarity=0.394  Sum_probs=62.6

Q ss_pred             HHHHhhhhcCCCCeecccccccccchhhHHHHHH-Hh---CCCEEe-EcCccccCchHHHHHHHhhCCCCCCc
Q 037179          180 LQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK-NC---GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPF  247 (266)
Q Consensus       180 l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~-~~---~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~  247 (266)
                      |.+|+++|++++||.|.+|++.|.....|..|++ .|   +++|.| .|++.|.....|..|++++|.++.|.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~   75 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS   75 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            5579999999999999999999999999999997 45   279999 99999999999999999999888875

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=3.6e-19  Score=116.62  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=65.9

Q ss_pred             hhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHhCCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          177 FRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       177 ~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ...|..|+++|++++||.|.+||+.|.....|..     +++|.| .|++.|...+.|..|+++ |++++||.|++|
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-----~~~~~C~~C~~~f~~~~~l~~H~~~-H~~~~~~~C~~C   73 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-----RKTPMCEKCRKDSCQEAALNKDEGN-ESGKKTSGPSSG   73 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-----SSSCCCHHHHHTCSCCCSSCCCSSC-CCCCCCSSCCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-----CCCCCCCCCChhhcCHHHHHHHHHh-hcCCCCCCCCCC
Confidence            3568889999999999999999999999999887     899999 999999999999999998 899999999998

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.5e-16  Score=107.41  Aligned_cols=84  Identities=19%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             CCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCC
Q 037179           95 WIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPL  174 (266)
Q Consensus        95 ~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f  174 (266)
                      .|.+|+++|++++||.|..|++.|.....|..|++.|+....            ....|.|..|+            +.|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~------------~~~~~~C~~C~------------~~f   57 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF------------VPAAFVCSKCG------------KTF   57 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSC------------CCCCEECSSSC------------CEE
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcC------------CCcceECCCCC------------Chh
Confidence            467899999999999999999999999999999987754310            01228899999            889


Q ss_pred             CChhhHHHHhhhhcCCCCeecccccccc
Q 037179          175 KDFRTLQTHYKRKHGLKPFMCRKCGKFL  202 (266)
Q Consensus       175 ~~~~~l~~H~~~h~~~kp~~C~~C~k~f  202 (266)
                      .....|..|+++|++++++.|..|+.+|
T Consensus        58 ~~~~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           58 TRRNTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             SCHHHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             CCHHHHHHHHHHccCCCCcccCCCCCCC
Confidence            9999999999999999999999998776

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.63  E-value=2.9e-16  Score=103.05  Aligned_cols=61  Identities=31%  Similarity=0.726  Sum_probs=56.6

Q ss_pred             hhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCCCc
Q 037179          186 RKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPF  247 (266)
Q Consensus       186 ~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~  247 (266)
                      .+.++++|.|..|++.|.....|..|+++|  ++||.| +|++.|.....|.+|+++ |++++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHH-HCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHh-cCCCCCC
Confidence            467889999999999999999999999986  789999 999999999999999998 7999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.4e-16  Score=103.97  Aligned_cols=70  Identities=23%  Similarity=0.419  Sum_probs=41.9

Q ss_pred             CCCceeccc--ccccccChhhHHhhhh-hcCCCCCCCCCCcCCCCCCccCCcCCCC--CCCCccCCCCCCCCCCCCChhh
Q 037179          105 GFTHFSCHV--CFKTFNRYNNLQMHMW-GHGSQYRKGPESLKGTQPRAILGIPCYC--CAEGCKNSINHPKAKPLKDFRT  179 (266)
Q Consensus       105 ~~k~~~C~~--C~k~F~~~~~L~~H~~-~h~~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~~~~~k~f~~~~~  179 (266)
                      ++++|.|..  |++.|.....|..|++ .|.++++                |.|..  |+            +.|.....
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~----------------~~C~~~~C~------------k~f~~~~~   55 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS----------------FSCPEPACG------------KSFNFKKH   55 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC----------------EECSCTTTC------------CEESSHHH
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC----------------eECCCCCCc------------CccCCHHH
Confidence            455566654  6666666666666665 4543222                56665  66            55666666


Q ss_pred             HHHHhhhhcCCCCeecccccccc
Q 037179          180 LQTHYKRKHGLKPFMCRKCGKFL  202 (266)
Q Consensus       180 l~~H~~~h~~~kp~~C~~C~k~f  202 (266)
                      |..|+++|++++||.|.+||+.|
T Consensus        56 L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           56 LKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             HHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             HHHHHHHhCCCCCeeCCCCCCCC
Confidence            66666666666666666666665

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.61  E-value=6.2e-17  Score=110.04  Aligned_cols=80  Identities=19%  Similarity=0.430  Sum_probs=66.5

Q ss_pred             CCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhh
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYK  185 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~  185 (266)
                      ++||.|..|++.|.....|..|+++|.++++                |.|..|+            +.|.....|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----------------~~C~~C~------------k~f~~~~~L~~H~~   52 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----------------FACDICG------------RKFARSDERKRHRD   52 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCC----------------EECTTTC------------CEESSHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCC----------------ccCCCCC------------CccCCHHHHHHHHH
Confidence            4678888888888888888888888865433                8888888            78888888888888


Q ss_pred             hhcCCCCeecccccccccchhhHHHHHHH
Q 037179          186 RKHGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       186 ~h~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      +|++ .+|.|..|++.|.....|..|++.
T Consensus        53 ~h~~-~~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           53 IQHI-LPILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHTH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCC-CcchHHHHHHHHHHHhhhHHHHHH
Confidence            8875 789999999999999999999884

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=101.36  Aligned_cols=66  Identities=20%  Similarity=0.328  Sum_probs=60.5

Q ss_pred             hhcCCCCeecccccccccchhhHHHHHHHh-----CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          186 RKHGLKPFMCRKCGKFLAVKGDWRTHEKNC-----GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       186 ~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~-----~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      +|++++||.|.+|++.|.....|..|+++|     +++|.| .|++.|.....|.+|++.+|.+++|.....
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~   72 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES   72 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSSS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcccc
Confidence            478999999999999999999999999975     689999 999999999999999988899998876554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.59  E-value=8.5e-16  Score=103.10  Aligned_cols=62  Identities=21%  Similarity=0.398  Sum_probs=55.6

Q ss_pred             hhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          184 YKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       184 ~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      +.++.+.++|.|++||+.|.....|.+|+++|  ++||.| +|++.|.++..|.+|++..|++|.
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            34567889999999999999999999999976  899999 999999999999999877798875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=6.9e-16  Score=100.68  Aligned_cols=62  Identities=24%  Similarity=0.488  Sum_probs=56.5

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      +.++|++++||.|.+|++.|.....|..|+++|  ++||.| +|++.|.....|..|+++ |+++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH-HHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh-cCCCC
Confidence            356799999999999999999999999999986  799999 999999999999999999 56553

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.7e-15  Score=98.26  Aligned_cols=62  Identities=24%  Similarity=0.378  Sum_probs=56.3

Q ss_pred             hhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCCCcc
Q 037179          186 RKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFS  248 (266)
Q Consensus       186 ~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~  248 (266)
                      .|++++||.|.+|++.|.....|..|+++|  ++||.| +|++.|.....|..|+++ |.+++|..
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHH-HHSSSCCS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHH-HhCCCCCC
Confidence            478899999999999999999999999986  789999 999999999999999999 67777643

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.56  E-value=2.5e-15  Score=101.00  Aligned_cols=77  Identities=27%  Similarity=0.526  Sum_probs=52.6

Q ss_pred             ceec--ccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCC--CCCCccCCCCCCCCCCCCChhhHHHH
Q 037179          108 HFSC--HVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYC--CAEGCKNSINHPKAKPLKDFRTLQTH  183 (266)
Q Consensus       108 ~~~C--~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~~~~~k~f~~~~~l~~H  183 (266)
                      ||.|  ..|++.|.....|..|+++|.++++                |.|..  |+            +.|.....|..|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----------------~~C~~~~C~------------~~f~~~~~l~~H   52 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP----------------YECPHEGCD------------KRFSLPSRLKRH   52 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC----------------EECCSTTCC------------CEESSHHHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC----------------eeCCCCCCc------------CccCCHHHHHHH
Confidence            4666  6677777777777777776654322                66766  76            667777777777


Q ss_pred             hhhhcCCCCeeccc---ccccccchhhHHHHHHHh
Q 037179          184 YKRKHGLKPFMCRK---CGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       184 ~~~h~~~kp~~C~~---C~k~f~~~~~L~~H~~~~  215 (266)
                      +++|++   |.|..   |++.|.....|..|++++
T Consensus        53 ~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           53 EKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             HHHHHS---EECCSCSSCCCEESSHHHHHHHHHHC
T ss_pred             HHHhCC---CCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            777766   77777   777777777777777653

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=3.2e-15  Score=98.78  Aligned_cols=27  Identities=26%  Similarity=0.528  Sum_probs=12.5

Q ss_pred             CCCceecccccccccChhhHHhhhhhc
Q 037179          105 GFTHFSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus       105 ~~k~~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      ++++|.|..|++.|.....|..|+++|
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h   41 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRTH   41 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHc
Confidence            344444444444444444444444444

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=2.1e-15  Score=104.58  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=63.9

Q ss_pred             cccccCCCchhhhhhcCCCceeccccccccc-ChhhHHhhhhhcCC-CCCCCCCCcCCCCCCccCCcCCCCCCCCccCCC
Q 037179           89 AAAKQYWIPTPEQILIGFTHFSCHVCFKTFN-RYNNLQMHMWGHGS-QYRKGPESLKGTQPRAILGIPCYCCAEGCKNSI  166 (266)
Q Consensus        89 ~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~-~~~~L~~H~~~h~~-~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  166 (266)
                      .+.....+..|+++|.++++|.|..|++.|. ....|..|+++|++ +++                |.|.+|+       
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~----------------~~C~~C~-------   61 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA----------------LKCQHCR-------   61 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH----------------HSCSSSC-------
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC----------------EECCCCC-------
Confidence            4555667888888888888888888888888 88888888888854 322                8888888       


Q ss_pred             CCCCCCCCCChhhHHHHhhhhcCCCCeecc
Q 037179          167 NHPKAKPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       167 ~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                           +.|.....|..|+++|++++|....
T Consensus        62 -----k~F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           62 -----KQFKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             -----CCCSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             -----CccCCHHHHHHHHHHHcCCCCCCCC
Confidence                 8888888888888888888886543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=3.2e-15  Score=95.64  Aligned_cols=58  Identities=21%  Similarity=0.456  Sum_probs=53.3

Q ss_pred             hhhhcCCCCeecccccccccchhhHHHHHHH-h---CCCEEe-EcCccccCchHHHHHHHhhC
Q 037179          184 YKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN-C---GKRWLC-VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       184 ~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~-~---~k~~~C-~C~k~F~~~~~L~~H~~~~H  241 (266)
                      +++|++++||.|..||+.|.....|..|+++ |   ++||.| .|++.|.+.+.|..|++++|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            3578999999999999999999999999987 4   589999 99999999999999999965

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=3.9e-15  Score=99.88  Aligned_cols=63  Identities=19%  Similarity=0.099  Sum_probs=57.3

Q ss_pred             ccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhh-hhcCCC
Q 037179           72 NYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHM-WGHGSQ  134 (266)
Q Consensus        72 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~h~~~  134 (266)
                      ...+.+.++|.|++|++.|.....|..|+++|++++||.|.+|++.|.+...|.+|+ ++|.++
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            345677889999999999999999999999999999999999999999999999996 578654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.52  E-value=8.6e-15  Score=90.72  Aligned_cols=53  Identities=26%  Similarity=0.472  Sum_probs=41.2

Q ss_pred             CCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhC
Q 037179          189 GLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       189 ~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H  241 (266)
                      |++||.|.+|++.|.....|..|+++|  ++||.| .|++.|.....|..|+++||
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            467888888888888888888888865  788888 88888888888888888854

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.51  E-value=9.8e-16  Score=111.70  Aligned_cols=110  Identities=10%  Similarity=0.089  Sum_probs=84.4

Q ss_pred             cCCCCCCCCCCCcccccccccCCCchhhhhh---cCCCceeccccccccc------ChhhHHhhhhhcCCCCCCCCCCcC
Q 037179           73 YSHSSNNPSAKGNANVAAAKQYWIPTPEQIL---IGFTHFSCHVCFKTFN------RYNNLQMHMWGHGSQYRKGPESLK  143 (266)
Q Consensus        73 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h---~~~k~~~C~~C~k~F~------~~~~L~~H~~~h~~~~~~~~~~~~  143 (266)
                      ..+++.++|.|...+..  ....+..+.+.+   ..++.+.|..|.+.|.      ....|..|+ .|+++++       
T Consensus         5 ~~~~~~k~~~~~~k~~~--~~~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~-------   74 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIF--IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQ-------   74 (129)
T ss_dssp             CCCTTCCGGGGCSSCEE--EECCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCS-------
T ss_pred             hhcccccccccccCCee--eeecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCC-------
Confidence            35678889988776533  333444553333   2356688988887765      556677777 5654332       


Q ss_pred             CCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          144 GTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       144 ~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                               |.|..|+            +.|.....|..|+++|  ++||.|.+||+.|...+.|..|++++
T Consensus        75 ---------~~C~~C~------------k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h  123 (129)
T 2wbt_A           75 ---------FVCPLCL------------MPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK  123 (129)
T ss_dssp             ---------EECTTTC------------CEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             ---------eECCCCC------------cccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHH
Confidence                     9999999            9999999999999999  89999999999999999999999976

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=6.9e-15  Score=102.18  Aligned_cols=70  Identities=19%  Similarity=0.229  Sum_probs=41.1

Q ss_pred             cCCCceecccccccccChhhHHhhhh-hcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCCCCChhhHHH
Q 037179          104 IGFTHFSCHVCFKTFNRYNNLQMHMW-GHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQT  182 (266)
Q Consensus       104 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~  182 (266)
                      .|++||.|..|++.|.....|..|++ +|++.        .++++     |.|..|+            +.|...+.|..
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~--------~~ekp-----f~C~~Cg------------k~F~~~~~L~~   68 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV--------VLNSS-----YVCVECN------------FLTKRYDALSE   68 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSC--------CCSCC-----EEETTTT------------EEESSTHHHHT
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC--------CCCCC-----cCCCCCC------------cccCCHHHHHH
Confidence            45666666666666666666666665 35220        00111     6666666            66666666666


Q ss_pred             H-hhhhcCCCCeecccc
Q 037179          183 H-YKRKHGLKPFMCRKC  198 (266)
Q Consensus       183 H-~~~h~~~kp~~C~~C  198 (266)
                      | +++|+|++||.|.++
T Consensus        69 H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           69 HNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             HHHHTSTTCCCEEEEEC
T ss_pred             HHHHhcCCCCCeeCCcc
Confidence            6 566666666666653

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=5.1e-15  Score=96.47  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=60.2

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      ....|+++++|.|+.|++.|.....|..|+++|.+++||.|..|++.|.....|..|+++|+++
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            4557899999999999999999999999999999999999999999999999999999999764

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=5.8e-15  Score=95.66  Aligned_cols=63  Identities=21%  Similarity=0.238  Sum_probs=59.3

Q ss_pred             CCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCC
Q 037179           74 SHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYR  136 (266)
Q Consensus        74 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~  136 (266)
                      +++++++|.|..|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|+++++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            477889999999999999999999999999999999999999999999999999999987654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2e-14  Score=99.09  Aligned_cols=77  Identities=18%  Similarity=0.198  Sum_probs=56.5

Q ss_pred             cccccCCCchhhhhhcCCCceecccccccc-cChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCC
Q 037179           89 AAAKQYWIPTPEQILIGFTHFSCHVCFKTF-NRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSIN  167 (266)
Q Consensus        89 ~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F-~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~  167 (266)
                      .|.....|..|+++|.++++|.|..|++.| .....|..|+++| ++++                |.|.+|+        
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~----------------~~C~~Cg--------   69 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEM----------------FTCHHCG--------   69 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCC----------------CCCSSSC--------
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCC----------------eECCCCC--------
Confidence            445566677778888888888888888888 7888888888877 5543                7788887        


Q ss_pred             CCCCCCCCChhhHHHH-hhhhcCCCCee
Q 037179          168 HPKAKPLKDFRTLQTH-YKRKHGLKPFM  194 (266)
Q Consensus       168 ~~~~k~f~~~~~l~~H-~~~h~~~kp~~  194 (266)
                          +.|.....|..| +++|+++..|.
T Consensus        70 ----k~F~~~~~L~~H~~~~H~~~p~~~   93 (96)
T 2ctd_A           70 ----KQLRSLAGMKYHVMANHNSLPSGP   93 (96)
T ss_dssp             ----CCCSSHHHHHHHHHHHTCCCSSCS
T ss_pred             ----CeeCCHHHHHHHhHHhcCCCCCCC
Confidence                777777788888 77776554443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.48  E-value=2.7e-14  Score=93.48  Aligned_cols=57  Identities=21%  Similarity=0.348  Sum_probs=27.5

Q ss_pred             CCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcC
Q 037179           76 SSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus        76 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      +++++|.|..|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|+
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   69 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS   69 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcC
Confidence            344444444444444444444444444444444444444444444444444444443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.46  E-value=1.1e-14  Score=90.24  Aligned_cols=56  Identities=13%  Similarity=0.226  Sum_probs=50.8

Q ss_pred             CCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcC
Q 037179           77 SNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus        77 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      ++++|.|..|++.|.....|..|+++|.+++||.|..|++.|.....|..|+++|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            46789999999999999999999999999999999999999999999999999885

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-15  Score=99.67  Aligned_cols=70  Identities=19%  Similarity=0.115  Sum_probs=42.4

Q ss_pred             CCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCCCCCccCCCCCCCCCC
Q 037179           94 YWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCCAEGCKNSINHPKAKP  173 (266)
Q Consensus        94 ~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~k~  173 (266)
                      ..|..|+++|.+++||.|..|++.|.....|..       ++                .|.|..|+            +.
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~----------------~~~C~~C~------------~~   48 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RK----------------TPMCEKCR------------KD   48 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SS----------------SCCCHHHH------------HT
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CC----------------CCCCCCCC------------hh
Confidence            445666666666666666666666666555544       11                15666666            55


Q ss_pred             CCChhhHHHHhhhhcCCCCeecccc
Q 037179          174 LKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       174 f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      |.....|..|+++|++++||.|++|
T Consensus        49 f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           49 SCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            6666666666666666666666665

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.45  E-value=7.7e-14  Score=86.34  Aligned_cols=53  Identities=23%  Similarity=0.522  Sum_probs=37.4

Q ss_pred             CeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      ||.|.+||+.|.....|..|+++|  ++||.| .|++.|...+.|..|+++ |.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS-KAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHS-SSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHH-hcccC
Confidence            567777777777777777777764  567777 777777777777777777 45443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=6.6e-14  Score=87.63  Aligned_cols=54  Identities=24%  Similarity=0.600  Sum_probs=41.9

Q ss_pred             CCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          191 KPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       191 kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      +||.|..|++.|.....|..|+++|  ++||.| .|++.|.+.+.|..|++..|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            4778888888888888888888765  678888 88888888888888875447665

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.42  E-value=4.1e-14  Score=87.58  Aligned_cols=55  Identities=15%  Similarity=0.211  Sum_probs=52.9

Q ss_pred             CCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179           80 PSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus        80 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      ||.|+.|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            6899999999999999999999999999999999999999999999999999765

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.4e-13  Score=90.83  Aligned_cols=34  Identities=18%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             CchhhhhhcCCCceecccccccccChhhHHhhhh
Q 037179           96 IPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMW  129 (266)
Q Consensus        96 l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~  129 (266)
                      |.+|+++|++++||.|..|++.|.....|..|++
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHH
Confidence            4455555666666666666666655555555554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.4e-13  Score=89.69  Aligned_cols=62  Identities=18%  Similarity=0.490  Sum_probs=53.3

Q ss_pred             HHHHh-hhhcCCCCeecc--cccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCC
Q 037179          180 LQTHY-KRKHGLKPFMCR--KCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGS  242 (266)
Q Consensus       180 l~~H~-~~h~~~kp~~C~--~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~  242 (266)
                      |..|. .+|.+++||.|.  .|++.|.....|..|+++|  ++||.| .|++.|...+.|..|+++ |+
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-Ht   73 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HT   73 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT-CC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh-cC
Confidence            33443 368899999997  5999999999999999975  899999 999999999999999998 53

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.9e-13  Score=93.85  Aligned_cols=59  Identities=22%  Similarity=0.274  Sum_probs=47.5

Q ss_pred             CeecccccccccchhhHHHHHHH-h--CCC--------EEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEKN-C--GKR--------WLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~~-~--~k~--------~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      .|.|..|++.|.....|..|+++ |  +++        |.| .|++.|.....|..|+++ |++++||.|+.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   95 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV-HTGEKSGPSSG   95 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHH-HHTCCCCSSCC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHh-cCCCCCCCCCC
Confidence            35677777777777777777765 4  334        899 999999999999999998 89999999974

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=2.8e-14  Score=91.19  Aligned_cols=61  Identities=13%  Similarity=0.169  Sum_probs=56.2

Q ss_pred             cCCCCCCCCCCCcccccccccCCCchhhhh-h-cCCCceecccccccccChhhHHhhhhhcCC
Q 037179           73 YSHSSNNPSAKGNANVAAAKQYWIPTPEQI-L-IGFTHFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus        73 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h-~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      ..|+++++|.|+.|++.|.....|..|+++ | .+++||.|+.|++.|.....|..|+++|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            356788999999999999999999999998 7 589999999999999999999999998864

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.38  E-value=2.6e-13  Score=83.09  Aligned_cols=45  Identities=24%  Similarity=0.451  Sum_probs=39.2

Q ss_pred             hCCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCcccccc
Q 037179          215 CGKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDD  259 (266)
Q Consensus       215 ~~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~  259 (266)
                      .++||.| +|++.|.....|.+|++..|++++||.|++|++.|.++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            3688888 89999999999999997338999999999999999864

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.4e-13  Score=91.03  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=55.7

Q ss_pred             CCCCCCCCCCCcccccccccCCCchhhhhhcC---CCceecccccccccChhhHHhhhh-hcCCC
Q 037179           74 SHSSNNPSAKGNANVAAAKQYWIPTPEQILIG---FTHFSCHVCFKTFNRYNNLQMHMW-GHGSQ  134 (266)
Q Consensus        74 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~---~k~~~C~~C~k~F~~~~~L~~H~~-~h~~~  134 (266)
                      .|+++++|.|.+|++.|.....|..|+++|.+   +++|.|..|++.|.....|..|++ .|.+.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            37889999999999999999999999999996   899999999999999999999995 55443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=1.6e-13  Score=85.85  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=52.3

Q ss_pred             CCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhh-hhcCCC
Q 037179           79 NPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHM-WGHGSQ  134 (266)
Q Consensus        79 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~h~~~  134 (266)
                      ++|.|+.|++.|.....|..|+++|++++||.|..|++.|.....|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            57999999999999999999999999999999999999999999999996 688643

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=3.4e-13  Score=87.90  Aligned_cols=62  Identities=23%  Similarity=0.410  Sum_probs=57.2

Q ss_pred             CccCCCCCCCCCCC--cccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcC
Q 037179           71 PNYSHSSNNPSAKG--NANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus        71 ~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      ....++++++|.|+  .|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|+
T Consensus        10 ~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             TSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            34567889999997  699999999999999999999999999999999999999999999883

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=2.8e-12  Score=81.81  Aligned_cols=57  Identities=19%  Similarity=0.332  Sum_probs=45.3

Q ss_pred             cCCCCeecccccccccchhhHHHHHHH-hCCCEEe--EcCccccCchHHHHHHHhhCCCCCC
Q 037179          188 HGLKPFMCRKCGKFLAVKGDWRTHEKN-CGKRWLC--VCGSDFKHKRSLKDHIKAFGSGHGP  246 (266)
Q Consensus       188 ~~~kp~~C~~C~k~f~~~~~L~~H~~~-~~k~~~C--~C~k~F~~~~~L~~H~~~~H~~~~p  246 (266)
                      .+++||.|..||+.|. .+.|..|+++ +++||.|  .||+.|..++.|..|+++ |...+|
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~-hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKD-SCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHT-TSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHh-hcccCc
Confidence            4577888888888888 8888888875 4788888  588888888888888887 555544

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=2.6e-12  Score=76.42  Aligned_cols=38  Identities=29%  Similarity=0.495  Sum_probs=35.4

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCc
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGV  254 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k  254 (266)
                      +++|.| +|++.|.+...|..|+++ |++++||.|++|+|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C~k   48 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG-SCSCCCCCSCCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHh-cCCCCCccCCCCCC
Confidence            688999 999999999999999998 89999999999986

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=8.2e-12  Score=85.54  Aligned_cols=58  Identities=21%  Similarity=0.209  Sum_probs=54.2

Q ss_pred             CcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhh-hcCCCC--------eecccccccccchhhHHHHHHHh--CCCEE
Q 037179          152 GIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKR-KHGLKP--------FMCRKCGKFLAVKGDWRTHEKNC--GKRWL  220 (266)
Q Consensus       152 ~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~-h~~~kp--------~~C~~C~k~f~~~~~L~~H~~~~--~k~~~  220 (266)
                      .+.|..|+            +.|.....|..|+++ |+++++        |.|.+|++.|.....|..|+++|  ++||.
T Consensus        25 ~~~C~~C~------------k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   92 (95)
T 2ej4_A           25 SRPKKSCD------------RTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGP   92 (95)
T ss_dssp             SSSCCCCC------------CCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCS
T ss_pred             CCcccccc------------cccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            37899999            999999999999998 999988        99999999999999999999976  89998


Q ss_pred             e
Q 037179          221 C  221 (266)
Q Consensus       221 C  221 (266)
                      |
T Consensus        93 C   93 (95)
T 2ej4_A           93 S   93 (95)
T ss_dssp             S
T ss_pred             C
Confidence            7

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.24  E-value=2.9e-12  Score=83.14  Aligned_cols=60  Identities=20%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             ccCCCCCCCCCCCc--ccccccccCCCchhhhhhcCCCceeccc--ccccccChhhHHhhhhhc
Q 037179           72 NYSHSSNNPSAKGN--ANVAAAKQYWIPTPEQILIGFTHFSCHV--CFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus        72 ~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h  131 (266)
                      .......++|.|..  |++.|.....|..|+++|++++||.|.+  |++.|.....|..|+++|
T Consensus         9 ~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A            9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34456778899998  9999999999999999999999999965  999999999999999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.5e-12  Score=76.76  Aligned_cols=36  Identities=33%  Similarity=0.616  Sum_probs=28.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+++.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2emf_A           10 GKHFECTECGKAFTRKSTLSMHQKI-HTGEKPSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESCHHHHHHHGGG-TSCSSCSCCCCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            455556 677788888888889887 788899999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.5e-12  Score=75.76  Aligned_cols=36  Identities=25%  Similarity=0.503  Sum_probs=27.6

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2ytj_A           10 EKPYICAECGKAFTIRSNLIKHQKI-HTKQKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH-TSCCCCSSCSCC
T ss_pred             CcCeECCCCChhhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            455555 667777888888888887 788888888876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.7e-12  Score=76.43  Aligned_cols=36  Identities=28%  Similarity=0.562  Sum_probs=28.0

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ene_A           10 EKPYKCNECGKVFRHNSYLSRHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHTT-TCCCCCCSCCCC
T ss_pred             CCCeECCCCCchhCChHHHHHHHhh-cCCCCCCCCCCC
Confidence            455555 667778888888888887 788888888887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.8e-12  Score=76.39  Aligned_cols=36  Identities=25%  Similarity=0.533  Sum_probs=27.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+++.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~c   46 (46)
T 2ytk_A           10 EKPYKCNECGKVFTQNSHLTNHWRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHHH-HSSSSCSSCCCC
T ss_pred             CCCEeCCcCCCccCCHHHHHHHHHH-HCCCCCCCCCCC
Confidence            455555 667777888888888887 688888888887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.7e-12  Score=75.66  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=27.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .||+.|.+.+.|..|+++ |++++||.|++|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   44 (44)
T 2emx_A            8 EKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGPSSG   44 (44)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH-HTSSCSCSCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            455666 677777888888888887 688888888877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.4e-12  Score=75.84  Aligned_cols=36  Identities=28%  Similarity=0.570  Sum_probs=27.6

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2ep2_A           10 EKPYECSICGKSFTKKSQLHVHQQI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHT-TSSCCSCCSCCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            455555 667777888888888887 788888888887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.8e-12  Score=76.31  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=27.1

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+++.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2emm_A           10 ERPHKCNECGKSFIQSAHLIQHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH-HSCCCTTSSSCC
T ss_pred             CCCeeCCCCChhhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            445555 566777788888888887 688888888887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.7e-12  Score=76.47  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=28.0

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+++.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2eq0_A           10 EKPYKCHECGKVFRRNSHLARHQLI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHTT-TCCCCCSCCSCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            455555 667778888888888887 788888888887

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.6e-12  Score=82.91  Aligned_cols=57  Identities=11%  Similarity=-0.025  Sum_probs=53.3

Q ss_pred             CCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc-cccccccChhhHHhhhhhcCC
Q 037179           75 HSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH-VCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus        75 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~-~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      ..+.++|.|..|++.|. ...|..|+++ ++++||.|. .|++.|..+..|..|+++|..
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            45778999999999999 9999999999 999999999 999999999999999999854

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.9e-12  Score=76.26  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=28.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eoe_A           10 EKPYKCNECGKVFTQNSHLANHQRI-HTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHGG-GSCCCSCSSCCC
T ss_pred             CCCeECCCcChhhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            455555 677778888888888887 788888988887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.6e-12  Score=75.64  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=28.5

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2enc_A           10 EKPFKCEECGKGFYTNSQCYSHQRS-HSGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH-SCCSSCCSSCCC
T ss_pred             CCCcCCCCCCCcCCChHHHHHHHHH-hCCCCCCCCCCC
Confidence            455556 677778888888888887 788888988887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.7e-12  Score=76.44  Aligned_cols=36  Identities=25%  Similarity=0.506  Sum_probs=26.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2emy_A           10 ENPYECHECGKAFSRKYQLISHQRT-HAGEKPSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHH-HTTSCCSCSSCC
T ss_pred             CcCcCCCCCCcccCcHHHHHHHHHH-cCCCCCCCCCCC
Confidence            455555 566777777888888887 688888888877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.22  E-value=1.8e-12  Score=76.38  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2el4_A           10 VKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHGGG-SSSCCCSCCTTC
T ss_pred             CCceECCCCCchhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            455555 677778888888889887 788999999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.22  E-value=1.7e-12  Score=76.44  Aligned_cols=36  Identities=28%  Similarity=0.537  Sum_probs=26.1

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+++.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ely_A           10 EKPFKCVECGKGFSRRSALNVHHKL-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSBCCSSSCCCBSSTTHHHHHHHH-HSCCSSCSCCCC
T ss_pred             CCCcccCccCcccCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            344444 566777777888888887 678888888877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.6e-12  Score=75.65  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=28.0

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +||+.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2epw_A           10 EKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHHH-CCSCCCSCCCCC
T ss_pred             CCCeeCCCCCCccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            455555 677778888888888887 788888888887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.1e-12  Score=76.04  Aligned_cols=36  Identities=36%  Similarity=0.660  Sum_probs=27.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|...+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eml_A           10 EKPYECSVCGKAFSHRQSLSVHQRI-HSGKKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG-GSSCCCSCSSCC
T ss_pred             CCCeeCCCcCCccCCHHHHHHHHHH-hcCCCCCCCCCC
Confidence            455555 667777888888888887 788888888887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=2.1e-12  Score=76.04  Aligned_cols=36  Identities=28%  Similarity=0.508  Sum_probs=28.5

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2em5_A           10 TKSHQCHECGRGFTLKSHLNQHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHTT-TSCSCCSSCCCC
T ss_pred             CCCeECCcCCCccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            455555 677778888888888887 788889998887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.21  E-value=2e-12  Score=76.18  Aligned_cols=36  Identities=31%  Similarity=0.575  Sum_probs=27.6

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2ema_A           10 EKRYKCNECGKVFSRNSQLSQHQKI-HTGEKPSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHTG-GGCCCCCSSSCC
T ss_pred             CcCcCCCCCcchhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            455555 667777888888888887 788888888877

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.1e-12  Score=76.06  Aligned_cols=36  Identities=28%  Similarity=0.482  Sum_probs=25.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eq4_A           10 EKLYNCKECGKSFSRAPCLLKHERL-HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCBTTTTBCCSCHHHHHHHHHH-CCSSSCCCCCCC
T ss_pred             CCCeECCCCCCccCchHHHHHHHHh-cCCCCCCCCCCC
Confidence            344444 566677777788888877 788888888877

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.1e-12  Score=76.07  Aligned_cols=36  Identities=31%  Similarity=0.513  Sum_probs=27.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|.+|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPSGPSSG   46 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHTT-TCCSCSSCCCCC
T ss_pred             CCCcCCCccChhhCChHHHHHHHHH-hCCCCCCCCCCC
Confidence            445555 566777888888888887 788888888887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=2e-12  Score=76.15  Aligned_cols=36  Identities=28%  Similarity=0.513  Sum_probs=28.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2em7_A           10 EKPYKCEECGKGFICRRDLYTHHMV-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHGGG-GTTCCCSSTTCC
T ss_pred             CcCccCCCccchhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            455555 677778888888889887 788899999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.2e-12  Score=75.95  Aligned_cols=36  Identities=25%  Similarity=0.537  Sum_probs=26.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2ytd_A           10 EKPYKCSECGKAFHRHTHLNEHRRI-HTGYRPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH-HTCCCSSCSSCC
T ss_pred             CcCeECCCCCCeeCChHHHHHHHHH-cCCCCCCCCCCC
Confidence            445555 566777777888888887 688888888877

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.21  E-value=1.9e-12  Score=76.32  Aligned_cols=36  Identities=25%  Similarity=0.519  Sum_probs=26.0

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|.+|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2emk_A           10 EKPYECKECGKAFSQTTHLIQHQRV-HTGEKPSGPSSG   46 (46)
T ss_dssp             SCSCBCSSSCCBCSCHHHHHHHHHH-HSSCCCSSCCCC
T ss_pred             CCceECCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            344444 566777777888888887 678888888877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=3e-12  Score=75.42  Aligned_cols=36  Identities=19%  Similarity=0.393  Sum_probs=23.5

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .||+.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2eoo_A           10 ERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGPSSG   46 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH-HHSTTSSCCSCC
T ss_pred             CCCEEccccCcccCCHHHHHHHHHH-HcCCCCCCCCCC
Confidence            344444 556666677777777776 677777777766

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.3e-12  Score=75.90  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=27.0

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+++.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2eoq_A           10 EKPFKCDICGKSFCGRSRLNRHSMV-HTAEKPSGPSSG   46 (46)
T ss_dssp             SCSCCCSSSCCCCSSHHHHHHHHHH-TTCCCSSSCCCC
T ss_pred             CCCcCCCcCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            344555 566777888888888887 788888888887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=2.3e-12  Score=75.88  Aligned_cols=36  Identities=28%  Similarity=0.512  Sum_probs=29.0

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQKV-HTGERPSGPSSG   46 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHTT-SCSCCSSCCSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHh-hCCCCCCCCCCC
Confidence            556666 677888888888888887 788889998887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.9e-12  Score=76.28  Aligned_cols=36  Identities=28%  Similarity=0.483  Sum_probs=24.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|...+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2emp_A           10 VKPYMCNECGKAFSVYSSLTTHQVI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHHH-HHCCSCCSCCCC
T ss_pred             CcCeECCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            344445 566667777777777776 677777777776

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.5e-12  Score=74.34  Aligned_cols=41  Identities=24%  Similarity=0.246  Sum_probs=37.7

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      |+++|++++||.|.+||+.|...+.|..|+++|  ++||.| .|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            678899999999999999999999999999975  799999 77

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.21  E-value=5.1e-13  Score=84.21  Aligned_cols=54  Identities=24%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             HHHHhhhhcCCCCeecccccccccchhhHHHHHHHhCCCEEeEcCccccCchHHHHHHHhhCCCCCCccCCCCCcccccc
Q 037179          180 LQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDD  259 (266)
Q Consensus       180 l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~~k~~~C~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~  259 (266)
                      |..|+++|++++||.|..||                         +.|...+.|.   ++ |++++||.|++||+.|.+.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~-------------------------k~F~~~~~l~---~~-H~~~k~~~C~~C~k~f~~~   52 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCS-------------------------STFTDLEANQ---LF-DPMTGTFRCTFCHTEVEED   52 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSC-------------------------CEEEHHHHHH---HE-ETTTTEEBCSSSCCBCEEC
T ss_pred             hhhHHHHcCCCCCccCCCCC-------------------------chhccHHHhH---hh-cCCCCCEECCCCCCccccC
Confidence            34566666666666666555                         4555555554   44 6777777777777777776


Q ss_pred             ccc
Q 037179          260 ASS  262 (266)
Q Consensus       260 ~~~  262 (266)
                      ++.
T Consensus        53 ~~~   55 (62)
T 1vd4_A           53 ESA   55 (62)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            654

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.7e-12  Score=76.43  Aligned_cols=36  Identities=28%  Similarity=0.635  Sum_probs=25.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~c   46 (46)
T 2emh_A           10 ERPYICTVCGKAFTDRSNLIKHQKI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHH-HHCSSCSSSCCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            344455 566677777777777776 677788888776

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.3e-12  Score=75.19  Aligned_cols=36  Identities=25%  Similarity=0.514  Sum_probs=27.6

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|...+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG-GCCCSCCSSCCC
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            445555 567777888888888887 788888888887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.2e-12  Score=75.25  Aligned_cols=36  Identities=25%  Similarity=0.553  Sum_probs=28.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2en1_A           10 EKPFKCEECGKRFTQNSQLHSHQRV-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG-GSCCCCSCCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            455556 677778888888888887 788888888887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.6e-12  Score=75.69  Aligned_cols=36  Identities=28%  Similarity=0.535  Sum_probs=27.9

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|...+.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2en6_A           10 EKPYGCNECGKTFSQKSILSAHQRT-HTGEKPSGPSSG   46 (46)
T ss_dssp             SCCEEETTTTEEESSHHHHHHHHHH-HSSCCCSSSCCC
T ss_pred             CcCeECCCCCcccCchHHHHHHHHH-cCCCCCCCCCCC
Confidence            455666 677777888888888887 688888888887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.5e-12  Score=75.11  Aligned_cols=42  Identities=29%  Similarity=0.421  Sum_probs=39.0

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+||+.|...+.|..|+++|  ++||.| .|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4888999999999999999999999999999975  899999 77

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.20  E-value=2.6e-12  Score=75.65  Aligned_cols=36  Identities=28%  Similarity=0.531  Sum_probs=27.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2em9_A           10 EKPYNCKECGKSFRWASCLLKHQRV-HSGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG-GTSCCCCSTTCC
T ss_pred             CcCeECCccccccCChHHHHHHHHH-hCCCCCCCCCCC
Confidence            455555 667777888888888887 788888888887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.1e-12  Score=75.30  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=38.9

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+||+.|...+.|..|+++|  ++||.| +|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4788999999999999999999999999999976  799999 87

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.3e-12  Score=75.18  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=38.8

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+||+.|...+.|..|+++|  ++||.| .|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            4788999999999999999999999999999976  799999 77

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=3.3e-12  Score=75.21  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+||+.|.....|..|+++|  ++||.| +|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            4788999999999999999999999999999975  899999 77

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=2.7e-12  Score=75.53  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=27.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2en8_A           10 EKSHTCDECGKNFCYISALRIHQRV-HMGEKCSGPSSG   46 (46)
T ss_dssp             CSSEECTTTCCEESSHHHHHHHHTT-TCCSCSSCCSCC
T ss_pred             CCCeECCCcCcccCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            444555 566777888888888887 788888888887

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=7.2e-12  Score=73.36  Aligned_cols=38  Identities=34%  Similarity=0.606  Sum_probs=33.0

Q ss_pred             hCCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCC
Q 037179          215 CGKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDG  253 (266)
Q Consensus       215 ~~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~  253 (266)
                      +++||.| +|++.|..++.|..|+++ |++++||.|++||
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~~~C~~cg   45 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKSGPSSG   45 (45)
T ss_dssp             SCCSSEETTTTEECSCHHHHHHHHHH-HSCCCCCCCCCCC
T ss_pred             CCCCCcCCCCCcccCCHHHHHHHHHH-ccCCCCCCCcCCC
Confidence            3677888 888899999999999998 7899999999996

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.1e-12  Score=76.05  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=39.4

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+||+.|...+.|..|+++|  ++||.| .|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5889999999999999999999999999999975  899999 77

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=2.9e-12  Score=75.44  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=26.6

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2yso_A           10 EKSHQCRECGEIFFQYVSLIEHQVL-HMGQKNSGPSSG   46 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH-HSCCSCCCTTCC
T ss_pred             CCCEEccccChhhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            445555 566777777888888887 688888888877

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.19  E-value=3.7e-12  Score=75.00  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=28.1

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+...|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQRM-HTREKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGG-GCCSSCCSCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            455555 677778888888888887 788888888887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4e-12  Score=74.81  Aligned_cols=36  Identities=28%  Similarity=0.464  Sum_probs=25.1

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2eov_A           10 EKPYKCSDCGKSFTWKSRLRIHQKC-HTGERHSGPSSG   46 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHHH-HSCCSSCCSCCC
T ss_pred             CCCccCCccChhhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            344444 566667777777788776 677888888776

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.7e-12  Score=74.96  Aligned_cols=36  Identities=28%  Similarity=0.529  Sum_probs=27.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+++.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~~   46 (46)
T 2ep3_A           10 EKPYRCAECGKAFTDRSNLFTHQKI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT-TTTSCCCCTTCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            445555 567777888888888887 788888888875

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.2e-12  Score=75.26  Aligned_cols=36  Identities=25%  Similarity=0.492  Sum_probs=24.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+++.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQNSHLARHRRV-HTGGKPSGPSSG   46 (46)
T ss_dssp             CSSEECSSSCCEESSSHHHHHHTHH-HHSCCCSCSCCC
T ss_pred             CCCeECCcCCchhCCHHHHHHHHHh-cCCCCCCCCCCC
Confidence            344444 566667777777777776 677777777776

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.1e-12  Score=74.79  Aligned_cols=42  Identities=21%  Similarity=0.310  Sum_probs=38.8

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+||+.|...+.|..|+++|  ++||.| +|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            4788999999999999999999999999999976  799999 77

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.8e-12  Score=74.50  Aligned_cols=42  Identities=19%  Similarity=0.266  Sum_probs=38.8

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|  ++||.| .|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            4788999999999999999999999999999976  799999 77

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=5.9e-12  Score=74.13  Aligned_cols=35  Identities=26%  Similarity=0.524  Sum_probs=22.1

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      +||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQRL-HTGQRPSGPSSG   46 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHHH-HHSCCCCCCCCC
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            33444 455666666667777766 567777777766

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.18  E-value=1.8e-11  Score=79.36  Aligned_cols=53  Identities=21%  Similarity=0.538  Sum_probs=38.5

Q ss_pred             hcCCCCeeccc--ccccccchhhHHHHHHHh--CCCEEe-E--cCccccCchHHHHHHHh
Q 037179          187 KHGLKPFMCRK--CGKFLAVKGDWRTHEKNC--GKRWLC-V--CGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       187 h~~~kp~~C~~--C~k~f~~~~~L~~H~~~~--~k~~~C-~--C~k~F~~~~~L~~H~~~  239 (266)
                      +...++|.|..  |++.|.....|..|+++|  ++||.| +  |++.|.....|..|+++
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            34566777776  777777777777777765  677777 5  77777777777777765

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.17  E-value=1.2e-12  Score=82.54  Aligned_cols=45  Identities=16%  Similarity=0.228  Sum_probs=39.2

Q ss_pred             cCCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccccccccchhhHH
Q 037179          150 ILGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWR  209 (266)
Q Consensus       150 ~~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~  209 (266)
                      ...|.|..|+            +.|.....|.   ++|++++||.|.+||+.|.....+.
T Consensus        12 ~k~~~C~~C~------------k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A           12 RASFKCPVCS------------STFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             SSEEECSSSC------------CEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             CCCccCCCCC------------chhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            4579999999            8898888876   8999999999999999998877654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=3.2e-12  Score=75.28  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~C   46 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQRV-HTGEKLSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH-HHCCCCCCSCCC
T ss_pred             CCCeECcccCchhCCHHHHHHHHHH-HcCCCCCCCCCC
Confidence            445555 566777777777777777 677778887776

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.1e-12  Score=75.11  Aligned_cols=36  Identities=28%  Similarity=0.493  Sum_probs=26.9

Q ss_pred             CCCEEe-EcCccccCchHHHHHHH-hhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIK-AFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~-~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|++ + |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~~-H~~~k~~~C~~C   47 (47)
T 2epx_A           10 KKPYECIECGKAFIQNTSLIRHWRYY-HTGEKPSGPSSG   47 (47)
T ss_dssp             CCSBCCSSSCCCBSSHHHHHHHHTTT-TTTSCSSSCCCC
T ss_pred             CCCEECCccCchhCChHHHHHHhHhh-cCCCCCCCCCCC
Confidence            344445 56677778888888888 6 788888888887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=6.7e-12  Score=73.85  Aligned_cols=42  Identities=24%  Similarity=0.347  Sum_probs=38.4

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+|++.|...+.|..|+++|  ++||.| +|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3788999999999999999999999999999976  789999 77

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=4.7e-12  Score=74.51  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+|++.|...+.|..|+++|  ++||.| +|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            4788999999999999999999999999999986  899999 77

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=7.5e-12  Score=73.63  Aligned_cols=42  Identities=17%  Similarity=0.104  Sum_probs=38.5

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+||+.|...+.|..|+++|  ++||.| .|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4788999999999999999999999999999976  799999 77

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=5.3e-12  Score=77.09  Aligned_cols=49  Identities=10%  Similarity=0.047  Sum_probs=45.2

Q ss_pred             ccCCCCCCCCCCCcccccccccCCCchhhh-hhcCCCceecccccccccC
Q 037179           72 NYSHSSNNPSAKGNANVAAAKQYWIPTPEQ-ILIGFTHFSCHVCFKTFNR  120 (266)
Q Consensus        72 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~C~k~F~~  120 (266)
                      ...++++++|.|++|++.|.....|..|++ +|.+++||.|.+|++.|.+
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            345788899999999999999999999997 9999999999999999975

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=8.5e-12  Score=73.41  Aligned_cols=41  Identities=24%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      |+++|++++||.|.+|++.|.....|..|+++|  ++||.| +|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            678899999999999999999999999999976  899999 77

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.9e-12  Score=74.11  Aligned_cols=36  Identities=25%  Similarity=0.578  Sum_probs=26.1

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~~   46 (46)
T 2em2_A           10 EKPFKCKECGKAFRQNIHLASHLRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH-HCCCCSSCSSCC
T ss_pred             CCCEECCcCCchhCCHHHHHHHHHH-hCCCCCCCCCCC
Confidence            445555 566777777788888887 678888888775

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.15  E-value=1.3e-11  Score=72.59  Aligned_cols=45  Identities=7%  Similarity=-0.045  Sum_probs=41.3

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466788999999999999999999999999999999999999887

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.5e-11  Score=71.31  Aligned_cols=36  Identities=28%  Similarity=0.489  Sum_probs=30.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQRI-HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT-TSSSCCCSCCCC
T ss_pred             CCCeeCcccCcccCChHHHHHHHHH-hCCCCCCCCCCC
Confidence            566777 788888888899999887 789999999887

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.14  E-value=1.3e-11  Score=75.30  Aligned_cols=43  Identities=19%  Similarity=0.229  Sum_probs=31.0

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHH
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      +.|.....|..|+++|++++||.|.+||+.|...+.|..|+++
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   46 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHH
Confidence            6777777888888888888888777776666666555555554

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.13  E-value=1.2e-11  Score=72.71  Aligned_cols=45  Identities=4%  Similarity=-0.066  Sum_probs=39.4

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            456778888999999999999999999999999999999999876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.2e-11  Score=72.78  Aligned_cols=45  Identities=9%  Similarity=-0.014  Sum_probs=39.2

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            456678888999999999999999999999999999999999876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.12  E-value=2.8e-11  Score=71.07  Aligned_cols=38  Identities=24%  Similarity=0.394  Sum_probs=29.1

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      +|+++|++++||.|..|++.|.+...|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVK   39 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCC
Confidence            46777778888888888888888888888888876544

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.2e-11  Score=72.66  Aligned_cols=45  Identities=7%  Similarity=-0.087  Sum_probs=39.5

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            456778888999999999999999999999999999999999877

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.1e-11  Score=70.93  Aligned_cols=38  Identities=26%  Similarity=0.262  Sum_probs=29.8

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQK   39 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCC
Confidence            57777888888888888888888888888888886544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.6e-11  Score=72.19  Aligned_cols=42  Identities=24%  Similarity=0.294  Sum_probs=38.1

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-Ec
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VC  223 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C  223 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|  ++||.| +|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3788999999999999999999999999999976  799998 64

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.9e-11  Score=71.01  Aligned_cols=38  Identities=24%  Similarity=0.400  Sum_probs=28.2

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      +|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKK   39 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCC
Confidence            46677777777777777777777777777777776543

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.6e-11  Score=72.16  Aligned_cols=45  Identities=9%  Similarity=0.027  Sum_probs=40.2

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            356678899999999999999999999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.4e-11  Score=70.23  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEK   39 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCS
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCC
Confidence            46777778888888888888888888888888876543

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.6e-11  Score=72.19  Aligned_cols=45  Identities=9%  Similarity=-0.054  Sum_probs=41.0

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456778999999999999999999999999999999999999887

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.8e-11  Score=70.53  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=27.0

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      +|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEK   39 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCC
Confidence            46667777777777777777777777777777775543

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.5e-11  Score=72.36  Aligned_cols=45  Identities=11%  Similarity=-0.033  Sum_probs=39.4

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            456778888999999999999999999999999999999999877

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.4e-11  Score=69.85  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=21.9

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      ++||.| +|++.|.+.+.|.+|+++ |++++||.|.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   42 (42)
T 2yte_A            8 EKPYSCAECKETFSDNNRLVQHQKM-HTVKSGPSSG   42 (42)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHHH-TSCCSSCCCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH-hCCCCCCCCC
Confidence            344444 556666667777777776 6777777764

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.3e-11  Score=72.57  Aligned_cols=45  Identities=7%  Similarity=-0.011  Sum_probs=40.0

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            456678899999999999999999999999999999999999877

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.6e-11  Score=70.16  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=30.4

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEK   39 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            57778888888888888888888888888888886544

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.7e-11  Score=70.59  Aligned_cols=38  Identities=32%  Similarity=0.444  Sum_probs=28.3

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEK   39 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSS
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCC
Confidence            46677777777888888888887778888877776543

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.4e-11  Score=72.49  Aligned_cols=35  Identities=31%  Similarity=0.560  Sum_probs=23.0

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2em4_A           10 QRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGPSS   45 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHHH-HSSSSCCCCCC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHh-cCCCCCCCCCC
Confidence            344444 566666777777777776 67777777764

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.7e-11  Score=70.55  Aligned_cols=38  Identities=21%  Similarity=0.300  Sum_probs=28.4

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEK   39 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCC
Confidence            46677777777888888888888888888877776543

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.6e-11  Score=72.20  Aligned_cols=45  Identities=11%  Similarity=0.010  Sum_probs=39.5

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            456678889999999999999999999999999999999999877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.9e-11  Score=70.45  Aligned_cols=38  Identities=21%  Similarity=0.405  Sum_probs=28.2

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEK   39 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCC
Confidence            46677777777777777777777777777777776544

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.10  E-value=1.4e-11  Score=72.47  Aligned_cols=45  Identities=7%  Similarity=-0.066  Sum_probs=39.0

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456778888999999999999999999999999999999998876

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.10  E-value=1.4e-11  Score=72.46  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=24.0

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2emj_A           10 EKPFECAECGKSFSISSQLATHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHH-HTTSCSSSSCC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            344555 566667777777777777 67777777764

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.6e-11  Score=70.67  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=28.7

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      +|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEK   39 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCC
Confidence            46777777788888888888888888888887776543

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.8e-11  Score=70.49  Aligned_cols=38  Identities=21%  Similarity=0.296  Sum_probs=26.8

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~   39 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVK   39 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCC
Confidence            46667777777777777777777777777777775543

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.6e-11  Score=72.23  Aligned_cols=45  Identities=9%  Similarity=-0.024  Sum_probs=39.2

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            356678888999999999999999999999999999999999877

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.5e-11  Score=72.29  Aligned_cols=45  Identities=9%  Similarity=0.060  Sum_probs=42.3

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466788999999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.8e-11  Score=70.52  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=26.5

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.+...|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDK   39 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            46666777777777777777777777777777775543

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.7e-11  Score=72.07  Aligned_cols=45  Identities=9%  Similarity=-0.036  Sum_probs=38.5

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456678888889999999999988889999988988889988876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.10  E-value=1.4e-11  Score=72.39  Aligned_cols=45  Identities=7%  Similarity=-0.048  Sum_probs=38.0

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            456678888888888888888888888888888888888888876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.9e-11  Score=69.38  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=23.5

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      |.|..|+            +.|...+.|..|+++|++++||.|++|
T Consensus        13 ~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           13 YKCNECG------------KVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CBCTTTC------------CBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             eECCCCC------------CeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            6677776            666667777777777777777777665

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.6e-11  Score=72.22  Aligned_cols=35  Identities=26%  Similarity=0.532  Sum_probs=25.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2ytp_A           10 ERHYECSECGKAFARKSTLIMHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT-TSCCCCCSSCC
T ss_pred             CCCeECCcCCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            445555 566777777888888877 78888888864

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.09  E-value=4.7e-11  Score=70.11  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=27.9

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.+...|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEK   39 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCC
Confidence            46677777777777777777777777777777776543

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.1e-11  Score=70.37  Aligned_cols=38  Identities=26%  Similarity=0.405  Sum_probs=27.3

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEK   39 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCC
Confidence            46667777777777777777777777777777776543

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.1e-11  Score=71.68  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=25.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2ytf_A           10 EKPFECSECQKAFNTKSNLIVHQRT-HTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHT-SCSSSSSCCCC
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            455555 566777777888888887 78888888864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.09  E-value=2.5e-11  Score=69.84  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=24.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   42 (42)
T 2el5_A            8 ENPYECSECGKAFNRKDQLISHQRT-HAGESGPSSG   42 (42)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG-GCCCCSCCCC
T ss_pred             CCCccCCCcChhhCCHHHHHHHHHh-cCCCCCCCCC
Confidence            455555 667777777788888877 6788888874

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.09  E-value=7.4e-11  Score=69.25  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=24.2

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      |.|..|+            +.|...+.|..|+++|++++||.|++|
T Consensus        13 ~~C~~C~------------k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A           13 WKCRECD------------MCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSC------------CCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             eECCCCC------------cccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            6777777            667777777777777777777777665

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1.7e-11  Score=72.04  Aligned_cols=35  Identities=31%  Similarity=0.576  Sum_probs=23.5

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C~~   45 (46)
T 2em3_A           10 EKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH-HCCCCCCCSCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            444555 566667777777777776 67777777764

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.08  E-value=7.2e-11  Score=71.95  Aligned_cols=49  Identities=14%  Similarity=0.144  Sum_probs=45.7

Q ss_pred             cccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           87 NVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        87 ~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      ++.|.....|..|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   51 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTS
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            4678889999999999999999999999999999999999999998764

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.08  E-value=2.1e-11  Score=70.11  Aligned_cols=39  Identities=21%  Similarity=0.392  Sum_probs=36.4

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      |+++|++++||.|.+||+.|...+.|..|+++|  ++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            678999999999999999999999999999976  789987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=5.5e-11  Score=69.80  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=26.6

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|+++++|.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEK   39 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCC
Confidence            35666777777777777777777777777777775543

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=4.8e-11  Score=70.04  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=28.3

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      +|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEK   39 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCC
Confidence            46677777777888888888887777888877776543

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.08  E-value=7.4e-11  Score=69.28  Aligned_cols=27  Identities=22%  Similarity=0.178  Sum_probs=15.0

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      +.|...+.|..|+++|++++||.|+.|
T Consensus        20 k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A           20 KAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555555555555555555555555544

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2e-11  Score=71.72  Aligned_cols=35  Identities=29%  Similarity=0.605  Sum_probs=25.5

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~p~~C~~   45 (46)
T 2yts_A           10 EKPYICNECGKSFIQKSHLNRHRRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG-TSSCCSSCCCC
T ss_pred             CcCEECCCCChhhCChHHHHHHHHh-cCCCCCcCCCC
Confidence            455555 566777777888888877 78888888864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.2e-11  Score=71.55  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=24.9

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2emi_A           10 ERHYECSECGKAFIQKSTLSMHQRI-HRGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHGG-GCSCCCCSCCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHhH-hCCCCCCCCCC
Confidence            445555 566777777778888877 67888888764

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.9e-11  Score=71.87  Aligned_cols=35  Identities=31%  Similarity=0.546  Sum_probs=23.9

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eow_A           10 EKPYKCNECGKAFRARSSLAIHQAT-HSGEKPSGPSS   45 (46)
T ss_dssp             CCCEECTTSCCEESSHHHHHHHHHH-HCCCSCSCTTC
T ss_pred             CCCeeccccCChhcCHHHHHHHHHH-cCCCCCCCCCC
Confidence            344445 566667777777777776 67777777764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=3.5e-11  Score=70.70  Aligned_cols=40  Identities=23%  Similarity=0.376  Sum_probs=37.1

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP   43 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            4788999999999999999999999999999976  799998

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.7e-11  Score=69.70  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=21.7

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      |+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            455666666666666655555555555554432  444443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.6e-11  Score=80.37  Aligned_cols=65  Identities=23%  Similarity=0.395  Sum_probs=56.9

Q ss_pred             hhHHHHhhhhcCCCCeecccccccccchhhHHHHHHH-hCCCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          178 RTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN-CGKRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       178 ~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~-~~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      ..|..|+++|.+++|+.|..|++.|. ...|..|+.. +++||.| .|++.|. ...|..|+++ |++++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~-~~~l~~H~~~-c~~~~   69 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVL-VKDLKTHPEV-CGREG   69 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEECSSSCCEEE-TTGGGTHHHH-BTTBS
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEcccCCCcCc-HHHHHHHHHH-ccCCc
Confidence            45788999999999999999999995 8999999942 4899999 9999987 5899999998 77764

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.07  E-value=1.8e-11  Score=72.74  Aligned_cols=45  Identities=11%  Similarity=-0.036  Sum_probs=41.7

Q ss_pred             ccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccc
Q 037179           72 NYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFK  116 (266)
Q Consensus        72 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k  116 (266)
                      ...+.++++|.|.+|++.|.....|..|+++|++++||.|.+|++
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CSCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            345788899999999999999999999999999999999999986

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=9.1e-11  Score=68.83  Aligned_cols=27  Identities=19%  Similarity=0.071  Sum_probs=16.6

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      +.|.....|..|+++|++++||.|++|
T Consensus        20 k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A           20 KSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            556666666666666666666666554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=3.1e-11  Score=70.17  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=22.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      ++||.| .|++.|...+.|..|+++ |++++||.|.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2yu5_A           10 ENPFKCSKCDRVFTQRNYLVQHERT-HARKSGPSSG   44 (44)
T ss_dssp             CCSEECSSSSCEESSSHHHHHHHHH-CCCCCSSCCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHhHh-cCCCCCCCCC
Confidence            344445 566667777777777776 6777777774

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1e-10  Score=68.62  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=22.9

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      |.|..|+            +.|.....|..|+++|++++||.|.+|
T Consensus        13 ~~C~~C~------------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A           13 YKCNECG------------KAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCTTTC------------CCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             cCCCCCC------------CccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            6666666            666666666666666666666666665

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.8e-11  Score=71.91  Aligned_cols=35  Identities=31%  Similarity=0.572  Sum_probs=24.9

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~   45 (46)
T 2emg_A           10 ENPFICSECGKVFTHKTNLIIHQKI-HTGERPSGPSS   45 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTT-TSCCCCSCSCC
T ss_pred             CCCEECCccCcccCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            344444 566777777888888877 78888888864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.4e-11  Score=71.41  Aligned_cols=35  Identities=29%  Similarity=0.582  Sum_probs=25.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|...+.|..|+++ |++++||.|++
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT-TSSCCSSCSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH-cCCCCCCCCCC
Confidence            445555 566777777888888877 78888888864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.8e-11  Score=71.98  Aligned_cols=35  Identities=29%  Similarity=0.606  Sum_probs=22.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|...+.|..|+++ |++++||.|++
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~~C~~   45 (46)
T 2eor_A           10 EKPYNCEECGKAFIHDSQLQEHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHH-HHSCCCSSSTT
T ss_pred             CcCccCCCCCCCcCCHHHHHHHHHh-cCCCCCCCCCC
Confidence            344444 555666666777777776 56777777764

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1e-10  Score=68.57  Aligned_cols=27  Identities=19%  Similarity=0.017  Sum_probs=14.5

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      +.|...+.|..|+++|++++||.|.+|
T Consensus        20 k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A           20 KSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            555555555555555555555555544

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.9e-11  Score=71.84  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=24.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFD  252 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C  252 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~C   46 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWIT-HTREKPSGPSSG   46 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTH-HHHCCCCSCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            444555 566666777777777776 677777777776

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.06  E-value=4.3e-11  Score=68.76  Aligned_cols=33  Identities=36%  Similarity=0.683  Sum_probs=19.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSR  249 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C  249 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|
T Consensus         9 ~~~~~C~~C~k~f~~~~~l~~H~~~-H~~~k~~~C   42 (42)
T 2epc_A            9 ETPYLCGQCGKSFTQRGSLAVHQRS-CSQSGPSSG   42 (42)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHH-TTCCCCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHhhh-cCCCCCCCC
Confidence            344444 455556666666666665 566666665

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.06  E-value=3.1e-11  Score=70.96  Aligned_cols=40  Identities=28%  Similarity=0.433  Sum_probs=37.0

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSS
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            4788999999999999999999999999999976  789988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.9e-11  Score=69.68  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGER   39 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCC
Confidence            46677778888888888888888888888888876544

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.6e-11  Score=69.47  Aligned_cols=38  Identities=24%  Similarity=0.289  Sum_probs=28.9

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      +|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEK   39 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCC
Confidence            46777778888888888888888888888888776543

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1e-10  Score=68.60  Aligned_cols=27  Identities=19%  Similarity=0.025  Sum_probs=15.4

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      +.|...+.|..|+++|++++||.|++|
T Consensus        20 k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A           20 KSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            555555555555555555555555554

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.3e-10  Score=68.24  Aligned_cols=27  Identities=19%  Similarity=0.020  Sum_probs=17.4

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      +.|.....|..|+++|++++||.|.+|
T Consensus        20 k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A           20 KGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            666666666666666666666666655

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.7e-11  Score=70.57  Aligned_cols=40  Identities=25%  Similarity=0.364  Sum_probs=37.2

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            4788999999999999999999999999999986  799988

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.2e-11  Score=70.82  Aligned_cols=40  Identities=23%  Similarity=0.389  Sum_probs=37.0

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            4788999999999999999999999999999976  789987

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.8e-11  Score=69.74  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=22.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2eof_A           10 EKPYECNECQKAFNTKSNLMVHQRT-HTGESGPSSG   44 (44)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHH-TTTSSCSCCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHH-hCCCCCCCCC
Confidence            344444 566667777777777776 6777777774

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3.1e-11  Score=70.91  Aligned_cols=35  Identities=23%  Similarity=0.446  Sum_probs=23.9

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~~   45 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVLSAHLNQHLRV-HTQETLSGPSS   45 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHHH-HSSCCSSSCCC
T ss_pred             CCCeECcccChhhCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            445555 566677777777777776 67777777763

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.8e-11  Score=71.97  Aligned_cols=35  Identities=31%  Similarity=0.568  Sum_probs=25.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| +|++.|.+...|.+|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHSV-HSGERPSGPSS   45 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTTT-TTSCCSCTTSC
T ss_pred             CcccCCCCCCcccCcHHHHHHHHHh-cCCCCCCCCCC
Confidence            445555 566777788888888887 78888888874

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.2e-10  Score=68.28  Aligned_cols=27  Identities=26%  Similarity=0.240  Sum_probs=16.7

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecccc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCRKC  198 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~~C  198 (266)
                      +.|.....|..|+++|++++||.|++|
T Consensus        20 k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           20 KAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             ceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            556666666666666666666666554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=3e-11  Score=71.01  Aligned_cols=40  Identities=20%  Similarity=0.305  Sum_probs=37.6

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      +|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            5889999999999999999999999999999976  789988

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=2.8e-11  Score=71.13  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=27.6

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCC-CCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSG-HGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~-~~p~~C~~  251 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++ ++||.|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~~C~~   46 (46)
T 2eoy_A           10 EKCFKCNKCEKTFSCSKYLTQHERI-HTRGVKSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESSSHHHHHHHTT-CCSCCTTSSSCC
T ss_pred             CCCEECcCCCCcCCCHHHHHHHHHH-cCCCCCCCCCCC
Confidence            455666 677888888888999887 788 89998874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=4.2e-11  Score=70.36  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=22.3

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      +||.| +|++.|.+.+.|.+|+++ |++++||.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRV-HTGERSSGPS   44 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHH-CSSCCSCSTT
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHH-hCCCCCCCCC
Confidence            44444 556666777777777776 6777777775

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=4e-11  Score=70.45  Aligned_cols=31  Identities=26%  Similarity=0.486  Sum_probs=17.1

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHH
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      |+++|++++||.|.+|++.|.....|..|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR   33 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHH
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHH
Confidence            5566666666666655555544444444444

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3e-11  Score=70.22  Aligned_cols=34  Identities=32%  Similarity=0.499  Sum_probs=23.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2eoj_A           10 ENPYECCECGKVFSRKDQLVSHQKT-HSGQSGPSSG   44 (44)
T ss_dssp             CCSCEETTTTEECSSHHHHHHHHTT-SSSSCSCCCC
T ss_pred             CcCeeCCCCCCccCCHHHHHHHHHH-cCCCCCCCCC
Confidence            445555 566777777777788777 6778888774

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.9e-11  Score=69.71  Aligned_cols=40  Identities=20%  Similarity=0.367  Sum_probs=37.3

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            5889999999999999999999999999999976  789987

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.2e-11  Score=70.90  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=22.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (46)
T 2yto_A           10 EKPYKCSDCGKAFTRKSGLHIHQQS-HTGERHSGPS   44 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH-HTCCCBTTTB
T ss_pred             CCCEECcccCCccCCHhHHHHHHHH-cCCCCCCCCC
Confidence            344445 566667777777777776 6777777775

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.2e-11  Score=70.31  Aligned_cols=40  Identities=25%  Similarity=0.368  Sum_probs=37.0

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            4788999999999999999999999999999976  789988

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.9e-11  Score=71.06  Aligned_cols=44  Identities=7%  Similarity=-0.086  Sum_probs=40.8

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      ....|+++++|.|+.|++.|.....|..|+++|++++||.|.+|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45678899999999999999999999999999999999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.6e-11  Score=70.16  Aligned_cols=31  Identities=26%  Similarity=0.546  Sum_probs=17.9

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHH
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      |+++|++++||.|.+|++.|.....|..|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHH
Confidence            5666666666666665555544444444444

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=4.6e-11  Score=70.17  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=36.9

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      .|+++|++++||.|.+||+.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP   43 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCC
Confidence            4788999999999999999999999999999976  789988

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.5e-11  Score=69.93  Aligned_cols=40  Identities=23%  Similarity=0.404  Sum_probs=36.7

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      .|+++|++++||.|.+||+.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            4788999999999999999999999999999976  788987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.8e-11  Score=70.84  Aligned_cols=45  Identities=9%  Similarity=-0.132  Sum_probs=38.7

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhh-hhcCCCceecccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQ-ILIGFTHFSCHVC  114 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~C  114 (266)
                      .+...|+++++|.|+.|++.|.....|..|++ +|++++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            45667888889999999999999999999998 8999999998876

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=5e-11  Score=70.03  Aligned_cols=34  Identities=26%  Similarity=0.472  Sum_probs=21.2

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      +||.| +|++.|.+.+.|..|+++ |++++||.|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH-HTSSCCCSCCC
T ss_pred             CCEECCccCcccCCHHHHHHHHHH-cCCCCCCCCCC
Confidence            33444 455666666677777766 56777777764

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6e-11  Score=69.61  Aligned_cols=40  Identities=23%  Similarity=0.369  Sum_probs=37.0

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      .|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            4788999999999999999999999999999975  899988

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=5e-11  Score=69.29  Aligned_cols=40  Identities=20%  Similarity=0.361  Sum_probs=37.3

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      +|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            5889999999999999999999999999999986  789986

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.4e-11  Score=69.95  Aligned_cols=33  Identities=30%  Similarity=0.562  Sum_probs=22.0

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      +||.| +|++.|.+.+.|..|+++ |++++||.|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTRT-HTGESGPSSG   44 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHTT-TCCSSSSCCC
T ss_pred             cCeECCCCCCccCCHHHHHHHhhh-cCCCCCCCCC
Confidence            33444 455666777777777776 6777777774

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.4e-11  Score=70.76  Aligned_cols=40  Identities=23%  Similarity=0.409  Sum_probs=37.5

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      +|+++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            5889999999999999999999999999999976  789987

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=9.9e-11  Score=67.68  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=28.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|...+.|..|+++ |++++||.|++
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   43 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTLQ-THSDKSGPSSG   43 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHHH-HTCTTCSSSCC
T ss_pred             CCCEECCCCCCeeCChHHHHHHHHh-hCCCCCccCCC
Confidence            566777 778888888888888887 78888888875

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=3.7e-11  Score=70.56  Aligned_cols=44  Identities=9%  Similarity=-0.050  Sum_probs=38.9

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      ....|+++++|.|+.|++.|.....|..|+++|++++||.|..|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45678888999999999999999999999999999999999877

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=3.5e-11  Score=69.20  Aligned_cols=33  Identities=39%  Similarity=0.922  Sum_probs=21.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSR  249 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C  249 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C   42 (42)
T 2eos_A            9 EKPYPCEICGTRFRHLQTLKSHLRI-HTGSGPSSG   42 (42)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHTTT-TSCCSSTTC
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHh-cCCCCCCCC
Confidence            344444 556666666777777776 677777766

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.6e-11  Score=69.88  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=20.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSR  249 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C  249 (266)
                      ++||.| +|++.|.+.+.|..|+++ |++++||.|
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~C   43 (44)
T 2eox_A           10 SKSYNCNECGKAFTRIFHLTRHQKI-HTRKSGPSS   43 (44)
T ss_dssp             CCCEEETTTTEEESSSHHHHTTHHH-HCCCCCCSC
T ss_pred             CCCeECcccCcccCCHHHHHHHHHH-hCCCCCCCC
Confidence            344445 555666666667777766 566777766

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.01  E-value=6.3e-11  Score=68.05  Aligned_cols=39  Identities=23%  Similarity=0.587  Sum_probs=36.6

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      |+++|++++||.|.+||+.|...+.|..|+++|  ++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            678999999999999999999999999999976  799987

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.7e-11  Score=70.08  Aligned_cols=35  Identities=29%  Similarity=0.530  Sum_probs=23.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|...+.|..|+++ |++++||.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eq3_A           10 EKPYECNQCGKAFSVRSSLTTHQAI-HTGKKPSGPSS   45 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHTT-SCCCCCCCSCC
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHH-hCCCCCCCCCC
Confidence            344555 566667777777777776 67777777763

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.6e-10  Score=67.50  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=28.9

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|.+...|..|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQRI-HTGEKSGPSSG   45 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHTT-TSSCCCCCSCC
T ss_pred             CcCccCCCCCCccCChHHHHHHHHH-hCCCCCCCCCC
Confidence            567777 788888888889999887 78889998874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=4.8e-11  Score=69.74  Aligned_cols=43  Identities=9%  Similarity=-0.105  Sum_probs=40.0

Q ss_pred             cCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceeccccc
Q 037179           73 YSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCF  115 (266)
Q Consensus        73 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~  115 (266)
                      ..|+++++|.|..|++.|.....|..|+++|+++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            3578899999999999999999999999999999999999986

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=4.8e-11  Score=69.36  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=24.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      ++||.| .|++.|...+.|..|+++ |++++||.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~~~~~C~   44 (44)
T 2emb_A           10 RKRYECSKCQATFNLRKHLIQHQKT-HAAKSGPSSG   44 (44)
T ss_dssp             CSSEECTTTCCEESCHHHHHHHGGG-GCCCCCTTCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH-cCCCCCcCCC
Confidence            344555 566777777788888877 7888888874

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=9.9e-11  Score=68.01  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      +||.| +|++.|...+.|..|+++ |++++||.|+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C~   44 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQAL-HAGESGPSSG   44 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHH-HTTSCCCCCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHH-HCCCCCCCCC
Confidence            34444 455666666666677666 5667777664

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.4e-10  Score=68.01  Aligned_cols=35  Identities=20%  Similarity=0.390  Sum_probs=25.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++||.|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~   45 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRI-HTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHH-HSSCCCSSCCC
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHH-hCCCCCCCCCC
Confidence            455555 666777777778888877 67888888864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.1e-10  Score=67.83  Aligned_cols=32  Identities=31%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCccC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSR  249 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C  249 (266)
                      +||.| +|++.|.+.+.|..|+++ |++++||.|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~~   43 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHERT-HAGVSGPSS   43 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGG-GSSCSCCCC
T ss_pred             cCeECCCCCcccCchHHHHHHHhH-hcCCCCCCC
Confidence            44444 455666666666677666 566666665

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=2e-10  Score=72.03  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=28.0

Q ss_pred             hCCCEEe-E--cCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          215 CGKRWLC-V--CGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       215 ~~k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++|||.| .  |+++|.+++.|.+|+++.|++++||.|..
T Consensus        24 GEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           24 PYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            4666666 4  88888888888888743388888888865

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.1e-10  Score=68.52  Aligned_cols=43  Identities=9%  Similarity=-0.007  Sum_probs=31.8

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            3455677777777777777777777777777777777777775

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.5e-10  Score=66.96  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=29.0

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k   39 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEK   39 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCC
Confidence            46777778888888888888888888888888776544

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.4e-10  Score=68.05  Aligned_cols=42  Identities=10%  Similarity=0.041  Sum_probs=31.4

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      +...|+++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            455677777777777777777777777777777777777775

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.1e-10  Score=66.55  Aligned_cols=38  Identities=24%  Similarity=0.352  Sum_probs=26.8

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      +|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEK   39 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCC
Confidence            46666777777777777777777777777777776543

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.2e-10  Score=68.34  Aligned_cols=43  Identities=9%  Similarity=0.009  Sum_probs=32.0

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            3455677777777777777777777777777777777777775

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.4e-10  Score=68.03  Aligned_cols=43  Identities=7%  Similarity=-0.084  Sum_probs=32.1

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      .+...|+++++|.|..|++.|.....|..|+++|++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3455677777777777777777777777777777777777775

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.6e-10  Score=67.85  Aligned_cols=44  Identities=7%  Similarity=-0.072  Sum_probs=34.6

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceeccc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHV  113 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  113 (266)
                      .+...|+++++|.|..|++.|.....|..|+++|++++||.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            35566778888888888888888888888888888888888753

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.5e-10  Score=66.26  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=29.0

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEK   39 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCC
Confidence            46777778888888888888888888888888876543

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=2.8e-10  Score=64.90  Aligned_cols=33  Identities=36%  Similarity=0.697  Sum_probs=25.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSR  249 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C  249 (266)
                      ++||.| .|++.|...+.|..|+++ |++++||.|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~C   41 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHERI-HTGSGPSSG   41 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGGG-CCCCSCSCC
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHHH-hCCCCCcCC
Confidence            566666 777777888888888877 778888877

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.3e-10  Score=68.29  Aligned_cols=42  Identities=10%  Similarity=-0.055  Sum_probs=31.6

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      +...|+++++|.|++|++.|.....|..|+++|++++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            455677777777777777777777777777777777777775

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.6e-10  Score=67.80  Aligned_cols=43  Identities=9%  Similarity=-0.024  Sum_probs=32.4

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      .+...|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3455677777788888888887777777787777777777775

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.8e-10  Score=67.57  Aligned_cols=42  Identities=12%  Similarity=0.064  Sum_probs=31.2

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      +...|+++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455677777777777777777777777777777777777775

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.1e-10  Score=65.06  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             hhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           99 PEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        99 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      |+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   38 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG   38 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCS
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCC
Confidence            5667777777777777777777777777777776543

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=7.2e-10  Score=64.90  Aligned_cols=32  Identities=25%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecc
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      |.|..|+            +.|.....|..|+++|++++||.|+
T Consensus        13 ~~C~~C~------------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A           13 YQCNECG------------KAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSCCSSC------------CCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             eECCCCC------------cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            6677776            6677777777777777777777665

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.9e-10  Score=66.03  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=28.9

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|+++++|.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEK   39 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCC
Confidence            46677778888888888888888888888888776543

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.1e-10  Score=67.24  Aligned_cols=42  Identities=10%  Similarity=0.011  Sum_probs=32.8

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      +...|+++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455677778888888888888888888888888888888775

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.93  E-value=1.2e-11  Score=83.45  Aligned_cols=58  Identities=12%  Similarity=0.150  Sum_probs=47.9

Q ss_pred             HHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCC
Q 037179          181 QTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       181 ~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~  243 (266)
                      ..|.++|++++||.|.+|++.|.....|..|+++|  ++||.| .|.    ....|..|+++ |.|
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~-~~~   74 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKY-ADG   74 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCC-CCC
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcc-ccc
Confidence            34567899999999999999999999999999976  799998 655    45567778887 666

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.7e-10  Score=67.61  Aligned_cols=42  Identities=14%  Similarity=0.027  Sum_probs=30.1

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      +...|+++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455667777777777777777777777777777777777765

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4.8e-10  Score=64.99  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKS   39 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCC
Confidence            46777888888888888888888888888888886544

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=7.1e-10  Score=64.92  Aligned_cols=25  Identities=24%  Similarity=0.123  Sum_probs=14.1

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      +.|...+.|..|+++|++++||.|+
T Consensus        20 k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A           20 KVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             cccCCHHHHHHHHHhhCCCCCCCCC
Confidence            5555555555555555555555554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=8.4e-10  Score=64.57  Aligned_cols=25  Identities=20%  Similarity=0.178  Sum_probs=16.2

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      +.|.....|..|+++|++++||.|+
T Consensus        20 k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A           20 KSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6666666666666666666666664

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=8.5e-10  Score=64.60  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=16.2

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      +.|...+.|..|+++|++++||.|+
T Consensus        20 k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A           20 KRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCHHHHHHHHHhcCCCCCCCCC
Confidence            6666666666666666666666664

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.9e-10  Score=67.46  Aligned_cols=43  Identities=7%  Similarity=-0.062  Sum_probs=35.1

Q ss_pred             CCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           70 LPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        70 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      .+...|+++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3556778888888888888888888888888888888888875

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.9e-10  Score=67.46  Aligned_cols=42  Identities=7%  Similarity=-0.039  Sum_probs=28.0

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcC-CCceecc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIG-FTHFSCH  112 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~k~~~C~  112 (266)
                      +...|+++++|.|..|++.|.....|..|+++|++ ++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            44556666666777777777666666666666666 6666664

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=2.8e-10  Score=66.06  Aligned_cols=42  Identities=10%  Similarity=-0.023  Sum_probs=33.4

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      +...|+++++|.|+.|++.|.....|..|+++|++++||.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            455677788888888888888888888888888888888774

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=8.4e-10  Score=64.59  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCeecc
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      |.|..|+            +.|.....|..|+++|++++||.|+
T Consensus        13 ~~C~~C~------------k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A           13 YKCNECG------------KVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             TCCSSSC------------CCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             eECCCCC------------cccCChhHHHHHhHhcCCCCCCCCC
Confidence            6666666            6666666666666666666666664

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=9.5e-10  Score=64.37  Aligned_cols=25  Identities=28%  Similarity=0.269  Sum_probs=16.0

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      +.|.....|..|+++|++++||.|+
T Consensus        20 k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A           20 KAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6666666666666666666666664

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=9.1e-10  Score=64.46  Aligned_cols=25  Identities=32%  Similarity=0.293  Sum_probs=14.7

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      +.|.....|..|+++|++++||.|+
T Consensus        20 k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A           20 KEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             cccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5555555666666666666665554

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=3.2e-10  Score=66.50  Aligned_cols=42  Identities=7%  Similarity=-0.121  Sum_probs=35.7

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      ....|+++++|.|+.|++.|.....|..|+++|++++||.|.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            345678888899999999999888899999999999998886

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.9e-10  Score=65.24  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=29.3

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQY  135 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~  135 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k   39 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKK   39 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCC
Confidence            46777788888888888888888888888888876543

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.1e-09  Score=64.09  Aligned_cols=25  Identities=24%  Similarity=0.166  Sum_probs=15.9

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      +.|.....|..|+++|++++||.|+
T Consensus        20 k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A           20 KVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            6666666666666666666666664

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=3.8e-10  Score=64.36  Aligned_cols=37  Identities=24%  Similarity=0.433  Sum_probs=32.7

Q ss_pred             hhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          185 KRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       185 ~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      ++|++++||.|.+|++.|.....|..|+++|  ++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4688999999999999999999999999876  788887

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.3e-10  Score=67.69  Aligned_cols=44  Identities=9%  Similarity=-0.038  Sum_probs=38.4

Q ss_pred             CccCCCCCCCCCCC--cccccccccCCCchhhhhhcCCCceecccc
Q 037179           71 PNYSHSSNNPSAKG--NANVAAAKQYWIPTPEQILIGFTHFSCHVC  114 (266)
Q Consensus        71 ~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C  114 (266)
                      +...|+++++|.|.  .|++.|.....|..|+++|++++||.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45678888999998  899999999999999999999999999877

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.2e-09  Score=63.15  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=15.1

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeec
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMC  195 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C  195 (266)
                      +.|.....|..|+++|++++||.|
T Consensus        20 k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A           20 KAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CccCCHHHHHHHhhhcCCCCCCCC
Confidence            556666666666666666666665

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.5e-09  Score=62.07  Aligned_cols=39  Identities=18%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC  221 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C  221 (266)
                      |+++|++++||.|.+|++.|...+.|..|+++|  ++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            344555555555555555555555555555543  445543

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=2.6e-10  Score=66.19  Aligned_cols=41  Identities=10%  Similarity=0.049  Sum_probs=24.9

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceec
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSC  111 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C  111 (266)
                      +...|+++++|.|+.|++.|.....|..|+++|++++||.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            34455566666666666666666666666666666666655

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=1.1e-09  Score=62.60  Aligned_cols=24  Identities=21%  Similarity=0.236  Sum_probs=13.6

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeec
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMC  195 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C  195 (266)
                      +.|...+.|..|+++|++++||.|
T Consensus        19 k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           19 KAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             chhCCHHHHHHHHHHhCCCCCCCC
Confidence            555555555555555555555554

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.4e-10  Score=67.03  Aligned_cols=42  Identities=5%  Similarity=-0.163  Sum_probs=29.8

Q ss_pred             CccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           71 PNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        71 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      +...|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455666777777777777777777777777777777777764

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.3e-10  Score=66.75  Aligned_cols=41  Identities=12%  Similarity=0.007  Sum_probs=30.5

Q ss_pred             ccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecc
Q 037179           72 NYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCH  112 (266)
Q Consensus        72 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~  112 (266)
                      ...|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            44567777777777777777777777777777777777775

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=4.6e-10  Score=64.35  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=24.8

Q ss_pred             hhhhhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179           99 PEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus        99 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      |+++|++++||.|..|++.|.+...|..|+++|+++
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~   37 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS   37 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCC
Confidence            456666777777777777777777777777777544

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=4e-10  Score=65.04  Aligned_cols=41  Identities=5%  Similarity=-0.172  Sum_probs=35.3

Q ss_pred             cCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceeccc
Q 037179           73 YSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHV  113 (266)
Q Consensus        73 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~  113 (266)
                      ..|+++++|.|..|++.|.....|..|+++|++++||.|.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            35778889999999999999999999999999999998863

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.2e-09  Score=63.34  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYR  136 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~~~  136 (266)
                      .|+++|++++||.|..|++.|.....|..|+++|+++++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG   40 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCC
Confidence            467778888888888888888888888888888866543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.84  E-value=1.4e-09  Score=61.28  Aligned_cols=35  Identities=17%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             hCCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCC
Q 037179          215 CGKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRP  250 (266)
Q Consensus       215 ~~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~  250 (266)
                      +++||.| .||+.|...+.|..|+++ |++++||.+.
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~-H~~~k~~~~~   38 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNV-HRRDRARLRL   38 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHT-TCCSCTTTTC
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHH-cCCCccceec
Confidence            4678888 899999999999999998 8999998763

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.84  E-value=1.1e-09  Score=59.23  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=28.5

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCccC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSR  249 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C  249 (266)
                      +||.| +||+.|...+.|..|+++ |+|++||.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL-HELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH-HTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH-hCCCCCCCC
Confidence            58999 999999999999999998 799999863

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.5e-09  Score=62.56  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=14.9

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      +.|.....|..|+++|++++||.|.
T Consensus        20 k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A           20 KAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             chhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5555556666666666666666554

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=4.9e-10  Score=73.15  Aligned_cols=66  Identities=11%  Similarity=0.025  Sum_probs=59.2

Q ss_pred             cccCCCccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179           66 LHIGLPNYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus        66 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      ..+..|...+.+.+++.|..|++.|. ...|..|+ .|.+++|+.|..|++.|. ...|..|+++|.++
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            34677888899999999999999995 78899999 999999999999999987 59999999999764

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=2.4e-09  Score=61.26  Aligned_cols=31  Identities=23%  Similarity=0.436  Sum_probs=15.0

Q ss_pred             hhhhcCCCCeecccccccccchhhHHHHHHH
Q 037179          184 YKRKHGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       184 ~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      +++|++++||.|.+|++.|...+.|..|+++
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRI   33 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTT
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHh
Confidence            3444444444454455444444444444443

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.81  E-value=2e-10  Score=77.46  Aligned_cols=58  Identities=9%  Similarity=-0.148  Sum_probs=35.4

Q ss_pred             ccCCCCCCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhcCC
Q 037179           72 NYSHSSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus        72 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      ...|+++++|.|+.|++.|.....|..|+++|++++||.|..|.    ....|..|+++|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            34566666666666666666666666666666666666665433    34555555665544

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.4e-09  Score=63.17  Aligned_cols=44  Identities=20%  Similarity=0.189  Sum_probs=38.9

Q ss_pred             hhhhhcCCCceecc--cccccccChhhHHhhhhhcCCCCCCCCCCcCCCCCCccCCcCCCCC
Q 037179           99 PEQILIGFTHFSCH--VCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAILGIPCYCC  158 (266)
Q Consensus        99 H~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~C~~C  158 (266)
                      |.++|++++||.|.  .|++.|.....|..|+++|+++++                |+|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~----------------~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP----------------SGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCS----------------CSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCC----------------CCCCCC
Confidence            56789999999998  899999999999999999976544                888876

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.77  E-value=2.6e-09  Score=59.21  Aligned_cols=35  Identities=26%  Similarity=0.458  Sum_probs=31.8

Q ss_pred             hhhhhcCCCceecccccccccChhhHHhhhhhcCC
Q 037179           99 PEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus        99 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      |+++|++++||.|+.|++.|.....|..|+++|++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            77889999999999999999999999999999864

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.74  E-value=3.2e-09  Score=58.88  Aligned_cols=33  Identities=24%  Similarity=0.565  Sum_probs=26.8

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |+++|++++||.|..|++.|.....|..|+++|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            677888888888888888888888888887765

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=8.1e-09  Score=57.14  Aligned_cols=29  Identities=17%  Similarity=0.316  Sum_probs=14.5

Q ss_pred             hhcCCCCeecccccccccchhhHHHHHHH
Q 037179          186 RKHGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       186 ~h~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      +|++++||.|.+||+.|...+.|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHH
Confidence            45555555555555544444444444443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=6e-09  Score=57.71  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=28.4

Q ss_pred             hhhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          101 QILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       101 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      ++|++++||.|..|++.|.....|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            4677888888888888888888888888888764

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.67  E-value=6.5e-09  Score=58.39  Aligned_cols=34  Identities=12%  Similarity=0.210  Sum_probs=26.4

Q ss_pred             hcCCCCeecccccccccchhhHHHHHHHh--CCCEE
Q 037179          187 KHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWL  220 (266)
Q Consensus       187 h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~  220 (266)
                      |++++||.|.+||+.|...+.|..|+++|  ++||.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            56788888888888888888888888865  56664

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=1e-08  Score=64.36  Aligned_cols=35  Identities=11%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             hcCCCCeeccc--ccccccchhhHHHHH-HHh--CCCEEe
Q 037179          187 KHGLKPFMCRK--CGKFLAVKGDWRTHE-KNC--GKRWLC  221 (266)
Q Consensus       187 h~~~kp~~C~~--C~k~f~~~~~L~~H~-~~~--~k~~~C  221 (266)
                      ++|+|||+|..  |+++|...+.|..|+ ++|  +|||.|
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            57899999975  999999999999997 555  899988

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.67  E-value=3.7e-09  Score=58.20  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=13.2

Q ss_pred             cCCCCeecccccccccchhhHHHHH
Q 037179          188 HGLKPFMCRKCGKFLAVKGDWRTHE  212 (266)
Q Consensus       188 ~~~kp~~C~~C~k~f~~~~~L~~H~  212 (266)
                      .|+|||.|++|||+|.+.+.|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            3455555555555555555555554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.65  E-value=1.3e-08  Score=55.42  Aligned_cols=30  Identities=23%  Similarity=0.573  Sum_probs=19.8

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGP  246 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p  246 (266)
                      ++||.| .|++.|.+.+.|..|+++ |++++|
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~-h~~~kp   35 (35)
T 2elx_A            5 SSGYVCALCLKKFVSSIRLRSHIRE-VHGAAQ   35 (35)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH-TSCTTC
T ss_pred             CCCeECCCCcchhCCHHHHHHHHHH-HcCCCC
Confidence            566666 666777777777777766 566554

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.63  E-value=8.9e-09  Score=56.62  Aligned_cols=29  Identities=24%  Similarity=0.578  Sum_probs=26.5

Q ss_pred             hCCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          215 CGKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       215 ~~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      ++|||.| .|||+|.++++|.+|+        ||.|..
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~--------py~C~~   34 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ--------AYYCSH   34 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH--------HHTSTT
T ss_pred             CccCeECCCCCCccCCHhHccCcC--------CeECcC
Confidence            5899999 9999999999999998        788875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.61  E-value=2.1e-08  Score=54.63  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=28.1

Q ss_pred             hhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          102 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       102 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +|++++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            367888999999999999999999999888754

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.5e-08  Score=56.54  Aligned_cols=28  Identities=25%  Similarity=0.433  Sum_probs=16.3

Q ss_pred             CCCEEe-E--cCccccCchHHHHHHHhhCCCC
Q 037179          216 GKRWLC-V--CGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       216 ~k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      ++||.| .  |+++|.+++.|.+|+++ |+|+
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~r~-Htg~   37 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHLKV-HTAL   37 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHHHH-HSCC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHh-cCCC
Confidence            455555 4  66666666666666665 4543

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.61  E-value=1.8e-08  Score=54.98  Aligned_cols=30  Identities=23%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGP  246 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p  246 (266)
                      ++||.| .|++.|...+.|..|+++ |++++|
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~~~   35 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLKV-HTDTLS   35 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGG-GTSCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHH-cCCCCC
Confidence            556666 666666666667777666 566554

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.60  E-value=1.9e-08  Score=54.73  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=27.5

Q ss_pred             hhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          102 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       102 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +|++++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            367888899999999999999999998888754

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.6e-08  Score=55.99  Aligned_cols=31  Identities=13%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             hhhcCCCCeecccccccccchhhHHHH-HHHh
Q 037179          185 KRKHGLKPFMCRKCGKFLAVKGDWRTH-EKNC  215 (266)
Q Consensus       185 ~~h~~~kp~~C~~C~k~f~~~~~L~~H-~~~~  215 (266)
                      ++|++++||.|+.||+.|...+.|..| +++|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            456777777777777777766666666 5554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.57  E-value=1.3e-09  Score=58.53  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=26.7

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCc
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPF  247 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~  247 (266)
                      +||.| .||+.|.+.+.|..|+++ |++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~-H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT-AFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS-SSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH-HccCCCC
Confidence            57889 999999999999999988 8999887

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.54  E-value=2.7e-08  Score=55.36  Aligned_cols=32  Identities=28%  Similarity=0.492  Sum_probs=21.9

Q ss_pred             hCCCEEe-E--cCccccCchHHHHHHHhhCCCCCCc
Q 037179          215 CGKRWLC-V--CGSDFKHKRSLKDHIKAFGSGHGPF  247 (266)
Q Consensus       215 ~~k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~~p~  247 (266)
                      +++||.| .  |++.|.+.+.|.+|+++ |++++||
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHK-HEMTLKF   37 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHH-HHTTTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHH-hCCCCCC
Confidence            3566666 4  77777777777777776 6677665

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=3.3e-08  Score=55.13  Aligned_cols=31  Identities=19%  Similarity=0.145  Sum_probs=25.6

Q ss_pred             hcCCCceeccc--ccccccChhhHHhhhhhcCC
Q 037179          103 LIGFTHFSCHV--CFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       103 h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~  133 (266)
                      +.+++||.|..  |++.|..+..|.+|+++|++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            56788888876  88888888888888888865

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2.2e-08  Score=55.47  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=29.3

Q ss_pred             hhhcCCCceecccccccccChhhHHhh-hhhcCC
Q 037179          101 QILIGFTHFSCHVCFKTFNRYNNLQMH-MWGHGS  133 (266)
Q Consensus       101 ~~h~~~k~~~C~~C~k~F~~~~~L~~H-~~~h~~  133 (266)
                      ++|++++||.|..|++.|.....|..| +++|++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            468899999999999999999999999 888864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=5e-08  Score=53.51  Aligned_cols=33  Identities=24%  Similarity=0.436  Sum_probs=27.9

Q ss_pred             hhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          102 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       102 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            467888999999999999999999999888653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=3.3e-08  Score=54.60  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=25.8

Q ss_pred             hhhcCCCceecccccccccCh-hhHHhhhhhcCC
Q 037179          101 QILIGFTHFSCHVCFKTFNRY-NNLQMHMWGHGS  133 (266)
Q Consensus       101 ~~h~~~k~~~C~~C~k~F~~~-~~L~~H~~~h~~  133 (266)
                      ++|++++||.|..|++.|... ..|..|+++|++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            356778888888888888888 888888888754

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.47  E-value=7.4e-08  Score=50.14  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=23.3

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      ++||.| .|++.|.....|..|+++ |++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~-h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLET-HDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHT-TCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHH-hccCC
Confidence            478888 888888888888888887 67653

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=6.1e-08  Score=53.08  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=27.1

Q ss_pred             hhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          102 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       102 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            467788888888888888888888888888653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=6e-08  Score=53.17  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=27.7

Q ss_pred             hhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          102 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       102 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            467888899999999999999999998888653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.46  E-value=2.7e-08  Score=53.13  Aligned_cols=31  Identities=3%  Similarity=-0.195  Sum_probs=24.3

Q ss_pred             CCCCCCcccccccccCCCchhhhhhcCCCce
Q 037179           79 NPSAKGNANVAAAKQYWIPTPEQILIGFTHF  109 (266)
Q Consensus        79 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~  109 (266)
                      +||.|+.|++.|.....|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4677888888888888888888888877775

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=8.2e-08  Score=52.96  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=18.3

Q ss_pred             hhcCCCCeecccccccccch-hhHHHHHHHh
Q 037179          186 RKHGLKPFMCRKCGKFLAVK-GDWRTHEKNC  215 (266)
Q Consensus       186 ~h~~~kp~~C~~C~k~f~~~-~~L~~H~~~~  215 (266)
                      +|++++||.|.+|++.|... +.|..|+++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H   33 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAH   33 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHH
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhc
Confidence            45666666666666666665 5666665543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.45  E-value=7.2e-08  Score=49.87  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=23.3

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      +||.| .||+.|...+.|..|+++ |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILL-HENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTG-GGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH-hcCCC
Confidence            57889 899999999999999987 67653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=9.6e-08  Score=52.31  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=14.0

Q ss_pred             hcCCCCeecccccccccchhhHHHHHHH
Q 037179          187 KHGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       187 h~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      |++++||.|.+|++.|.....|..|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            4455555555555555444444444443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.44  E-value=6.1e-08  Score=56.82  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             CCchhhhhhcCCCceecc--cccccccChhhHHhhhhhcCCC
Q 037179           95 WIPTPEQILIGFTHFSCH--VCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus        95 ~l~~H~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      .+..|...|++++||.|.  .|++.|.....|..|+++|+++
T Consensus         5 ~~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            345566678999999995  6999999999999999999754

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.44  E-value=8.3e-08  Score=56.53  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=29.1

Q ss_pred             hhcCCCceecccccccccChhhHHhhhh-hcCCCC
Q 037179          102 ILIGFTHFSCHVCFKTFNRYNNLQMHMW-GHGSQY  135 (266)
Q Consensus       102 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~h~~~~  135 (266)
                      +|++++||.|..|++.|.....|..|++ +|+++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            5789999999999999999999999999 997653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=9.8e-08  Score=52.28  Aligned_cols=28  Identities=21%  Similarity=0.514  Sum_probs=15.5

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      ++||.| .|++.|...+.|..|+++ |+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~-H~~~   35 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHMLV-HGDK   35 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT-TSTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH-hcCC
Confidence            445555 555555555556666555 4544

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.43  E-value=8.9e-08  Score=56.39  Aligned_cols=28  Identities=25%  Similarity=0.646  Sum_probs=15.0

Q ss_pred             CCCEEe-EcCccccCchHHHHHHH-hhCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIK-AFGSGH  244 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~-~~H~~~  244 (266)
                      ++||.| +|++.|.+...|..|++ + |+++
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~~~-H~~e   34 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYAHS-HLAE   34 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHHHS-SCC-
T ss_pred             CcCEECCCcCcccCCHHHHHHHhhhh-cCCC
Confidence            455555 55555555555666655 4 4544

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.43  E-value=1.2e-07  Score=52.63  Aligned_cols=33  Identities=21%  Similarity=0.535  Sum_probs=28.0

Q ss_pred             hcCCCCeecc--cccccccchhhHHHHHHHh--CCCE
Q 037179          187 KHGLKPFMCR--KCGKFLAVKGDWRTHEKNC--GKRW  219 (266)
Q Consensus       187 h~~~kp~~C~--~C~k~f~~~~~L~~H~~~~--~k~~  219 (266)
                      |++++||.|.  .|++.|...+.|..|+++|  ++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            5788999999  5999999999999999875  6665

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.4e-07  Score=51.51  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=15.6

Q ss_pred             hcCCCCeecccccccccchhhHHHHHHHh
Q 037179          187 KHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       187 h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |++++||.|.+|++.|.....|..|+++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            45555555555555555555555555443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1e-07  Score=52.09  Aligned_cols=33  Identities=21%  Similarity=0.252  Sum_probs=24.5

Q ss_pred             hhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          102 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       102 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      .|.++++|.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            356677788888888888888888888777643

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.3e-07  Score=51.74  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=26.6

Q ss_pred             hhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          102 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       102 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            356778888888888888888888888888653

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.39  E-value=1.2e-07  Score=48.30  Aligned_cols=24  Identities=17%  Similarity=0.552  Sum_probs=18.4

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHh
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      ++||.| .||+.|...+.|..|+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHh
Confidence            467777 788888888888888776

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.39  E-value=1.4e-07  Score=48.32  Aligned_cols=27  Identities=30%  Similarity=0.754  Sum_probs=20.5

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~  243 (266)
                      ++||.| .|++.|...+.|..|+++ |+|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~-h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRV-HTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTT-SCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHh-cCC
Confidence            467888 888888888888888877 543

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.38  E-value=1.7e-07  Score=47.63  Aligned_cols=24  Identities=17%  Similarity=0.549  Sum_probs=16.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHh
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      ++||.| .||+.|...+.|..|+++
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHH
Confidence            356777 777777777777777766

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.38  E-value=1.2e-07  Score=48.99  Aligned_cols=27  Identities=26%  Similarity=0.722  Sum_probs=21.0

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      +||.| .|++.|...+.|..|+++ |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS-HTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH-HSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH-hcCC
Confidence            47788 888888888888888887 5665

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.5e-07  Score=51.55  Aligned_cols=24  Identities=42%  Similarity=0.850  Sum_probs=12.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHh
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      ++||.| .|++.|...+.|..|+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHH
Confidence            344444 455555555555555554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.73  E-value=4.5e-08  Score=50.78  Aligned_cols=28  Identities=32%  Similarity=0.712  Sum_probs=23.0

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      +||.| .|++.|...+.|..|+++ |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ-HTGEK   29 (29)
Confidence            57888 899999998999999887 66653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.36  E-value=1.5e-07  Score=48.96  Aligned_cols=28  Identities=29%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      +||.| .|++.|...+.|..|+++ |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKT-KHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH-HTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH-HccCC
Confidence            57888 888888888888888887 55654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.69  E-value=5.6e-08  Score=50.71  Aligned_cols=28  Identities=25%  Similarity=0.657  Sum_probs=22.7

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      ++||.| .||+.|...+.|..|+++ |+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~-h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRI-HTGE   29 (30)
Confidence            468888 888888888888888887 6665

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.34  E-value=2.7e-07  Score=58.12  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=17.9

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      ++||.| .|++.|.+++.|.+|+++ |+++
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r~-Htg~   39 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEAQ-HGVT   39 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHH-HTTT
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhhh-hCCC
Confidence            556666 666666666667777766 4544

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=2.7e-07  Score=50.37  Aligned_cols=29  Identities=28%  Similarity=0.497  Sum_probs=15.8

Q ss_pred             hcCCCCeecccccccccchhhHHHHHHHh
Q 037179          187 KHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       187 h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |++++||.|.+|++.|.....|..|+++|
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLH   32 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHh
Confidence            45555555555555555555555555543

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.33  E-value=1.4e-07  Score=48.66  Aligned_cols=28  Identities=32%  Similarity=0.655  Sum_probs=20.9

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      +||.| .|++.|.....|..|+++ |++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~-H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI-HSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH-HHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHH-hcCCC
Confidence            47778 788888888888888877 56653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.31  E-value=1.4e-07  Score=48.55  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=20.7

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      +||.| .|++.|...+.|..|+++ |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~-h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI-HIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH-HHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH-hccC
Confidence            57788 888888888888888887 5554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.31  E-value=1.8e-07  Score=51.65  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=14.3

Q ss_pred             hcCCCCeeccc--ccccccchhhHHHHHHH
Q 037179          187 KHGLKPFMCRK--CGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       187 h~~~kp~~C~~--C~k~f~~~~~L~~H~~~  214 (266)
                      |++++||.|.+  ||+.|...+.|..|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            44555555552  55555555555555443

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.30  E-value=5.6e-07  Score=48.21  Aligned_cols=30  Identities=20%  Similarity=0.208  Sum_probs=23.6

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCCCee
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLKPFM  194 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~kp~~  194 (266)
                      |.|..|+            +.|...+.|..|+++|++++||.
T Consensus         3 ~~C~~C~------------k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            3 FACPECP------------KRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCSSSC------------CCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             ccCCCCC------------chhCCHHHHHHHHHHhCCCCCCC
Confidence            7788887            77888888888888888887775

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.28  E-value=1.3e-07  Score=55.38  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=27.2

Q ss_pred             HHHHhhhhcCCCCeecc--cccccccchhhHHHHHHHh
Q 037179          180 LQTHYKRKHGLKPFMCR--KCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       180 l~~H~~~h~~~kp~~C~--~C~k~f~~~~~L~~H~~~~  215 (266)
                      +..|...|++++||.|.  .||+.|...+.|..|+++|
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence            34556678899999995  6888887777777777765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.27  E-value=4.7e-07  Score=45.90  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=23.8

Q ss_pred             CCCeecccccccccchhhHHHHHHHh
Q 037179          190 LKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       190 ~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      ++||.|..||+.|...+.|..|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            57999999999999999999999875

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.27  E-value=2.1e-07  Score=48.48  Aligned_cols=28  Identities=32%  Similarity=0.602  Sum_probs=22.2

Q ss_pred             CCEEe-EcCccccCchHHHHH-HHhhCCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDH-IKAFGSGHG  245 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H-~~~~H~~~~  245 (266)
                      +||.| .|++.|.+.+.|..| +++ |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~-H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI-HSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT-SCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH-ccCCC
Confidence            57888 888888888889888 565 77764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.26  E-value=2.9e-07  Score=50.74  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=25.0

Q ss_pred             hcCCCceeccc--ccccccChhhHHhhhhhcCCC
Q 037179          103 LIGFTHFSCHV--CFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       103 h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      |++++||.|.+  |++.|.....|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56778888874  888888888888888888643

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.26  E-value=5.6e-07  Score=56.66  Aligned_cols=30  Identities=23%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             hhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          186 RKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       186 ~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      .|.++|||+|.+|++.|...+.|..|+++|
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~H   36 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQH   36 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhh
Confidence            367788999999999999999999999887

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.23  E-value=3.1e-07  Score=46.48  Aligned_cols=25  Identities=24%  Similarity=0.608  Sum_probs=19.5

Q ss_pred             CEEe-EcCccccCchHHHHHHHhhCCC
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~H~~  243 (266)
                      ||.| .|++.|.+.+.|..|+++ |++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~-h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRV-HKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGG-TCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHH-cCC
Confidence            5778 888888888888888887 565

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.22  E-value=5.7e-07  Score=45.65  Aligned_cols=26  Identities=27%  Similarity=0.589  Sum_probs=23.5

Q ss_pred             CCceecccccccccChhhHHhhhhhc
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      ++||.|..|++.|.....|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            46899999999999999999999887

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.20  E-value=8.2e-07  Score=45.95  Aligned_cols=29  Identities=17%  Similarity=0.463  Sum_probs=24.4

Q ss_pred             CCceecccccccccChhhHHhhhhhcCCC
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      ++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            46889999999999999999999888653

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.20  E-value=7.5e-07  Score=45.46  Aligned_cols=27  Identities=30%  Similarity=0.578  Sum_probs=23.8

Q ss_pred             CCceecccccccccChhhHHhhhhhcC
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999998885

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.19  E-value=7.8e-07  Score=47.04  Aligned_cols=28  Identities=21%  Similarity=0.489  Sum_probs=18.9

Q ss_pred             CCCEEe-E--cCccccCchHHHHHHHhhCCCC
Q 037179          216 GKRWLC-V--CGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       216 ~k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      ++||.| .  |++.|...+.|..|+++ |+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKS-HQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG-GTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHH-ccCC
Confidence            356666 2  77777777777777776 5655

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.49  E-value=2e-07  Score=46.86  Aligned_cols=23  Identities=35%  Similarity=0.868  Sum_probs=16.7

Q ss_pred             CCEEe-EcCccccCchHHHHHHHh
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      +||.| .||+.|.+.+.|..|+++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            46777 777777777777777776

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.18  E-value=8e-07  Score=45.72  Aligned_cols=27  Identities=33%  Similarity=0.658  Sum_probs=22.1

Q ss_pred             CceecccccccccChhhHHhhhhhcCC
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      +||.|..|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcC
Confidence            478888888888888888888888864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.14  E-value=8.3e-07  Score=46.59  Aligned_cols=27  Identities=26%  Similarity=0.786  Sum_probs=18.6

Q ss_pred             CCEEe---EcCccccCchHHHHHHHhhCCCC
Q 037179          217 KRWLC---VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       217 k~~~C---~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      +||.|   .||+.|...+.|..|+++ |+|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~-H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHH-hcCC
Confidence            45666   477777777777777776 5665

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.13  E-value=1.1e-06  Score=45.18  Aligned_cols=27  Identities=33%  Similarity=0.735  Sum_probs=21.2

Q ss_pred             CceecccccccccChhhHHhhhhhcCC
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      +||.|..|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcC
Confidence            467888888888888888888888764

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.11  E-value=1.7e-06  Score=45.71  Aligned_cols=29  Identities=31%  Similarity=0.472  Sum_probs=22.8

Q ss_pred             CCceecc--cccccccChhhHHhhhhhcCCC
Q 037179          106 FTHFSCH--VCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       106 ~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      ++||.|.  .|++.|.....|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            3678888  7888888888888888888653

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.08  E-value=1.7e-06  Score=45.28  Aligned_cols=28  Identities=36%  Similarity=0.608  Sum_probs=22.6

Q ss_pred             Cceecc--cccccccChhhHHhhhhhcCCC
Q 037179          107 THFSCH--VCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       107 k~~~C~--~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +||.|.  .|++.|.....|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            478887  8888888888888888888653

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.35  E-value=4.6e-07  Score=46.72  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=12.2

Q ss_pred             ceecccccccccChhhHHhhhhhcC
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      ||.|..|++.|.....|..|+++|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            3444455555554445555544443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.07  E-value=1.8e-06  Score=43.55  Aligned_cols=26  Identities=23%  Similarity=0.516  Sum_probs=21.3

Q ss_pred             ceecccccccccChhhHHhhhhhcCC
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      ||.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            57888888888888888888888854

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=1.3e-06  Score=44.82  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=21.5

Q ss_pred             CceecccccccccChhhHHhhhhhcCC
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      +||.|..|++.|.....|..|+++|++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcC
Confidence            468888888888888888888888754

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.32  E-value=5.6e-07  Score=45.13  Aligned_cols=25  Identities=28%  Similarity=0.764  Sum_probs=22.3

Q ss_pred             CCeecccccccccchhhHHHHHHHh
Q 037179          191 KPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       191 kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |||.|.+||+.|...+.|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            5899999999999999999998865

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.29  E-value=6.5e-07  Score=46.45  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=13.0

Q ss_pred             CceecccccccccChhhHHhhhhhcC
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      +||.|..|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            34455555555555555555555443

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.03  E-value=2.2e-06  Score=44.25  Aligned_cols=28  Identities=21%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             CceecccccccccChhhHHhhhhhcCCC
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccC
Confidence            3677777777777777777777777543

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.01  E-value=1.2e-06  Score=44.81  Aligned_cols=26  Identities=35%  Similarity=0.548  Sum_probs=15.0

Q ss_pred             ceecccccccccChhhHHhhhhhcCC
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      ||.|..|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            45566666666666666666555543

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.00  E-value=2.9e-06  Score=43.86  Aligned_cols=28  Identities=25%  Similarity=0.520  Sum_probs=22.3

Q ss_pred             CceecccccccccChhhHHhh-hhhcCCC
Q 037179          107 THFSCHVCFKTFNRYNNLQMH-MWGHGSQ  134 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H-~~~h~~~  134 (266)
                      +||.|..|++.|.....|..| +++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            468888888888888888888 6787653

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.84  E-value=8.7e-06  Score=41.53  Aligned_cols=26  Identities=31%  Similarity=0.534  Sum_probs=22.8

Q ss_pred             Cceecc--cccccccChhhHHhhhhhcC
Q 037179          107 THFSCH--VCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       107 k~~~C~--~C~k~F~~~~~L~~H~~~h~  132 (266)
                      +||.|.  .|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            478899  99999999999999998885

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.72  E-value=1.4e-05  Score=40.74  Aligned_cols=23  Identities=22%  Similarity=0.635  Sum_probs=12.1

Q ss_pred             Ceecc--cccccccchhhHHHHHHH
Q 037179          192 PFMCR--KCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       192 p~~C~--~C~k~f~~~~~L~~H~~~  214 (266)
                      ||.|.  .||+.|...+.|..|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            45555  555555555555555544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00028  Score=43.87  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=13.3

Q ss_pred             CEEe---EcCccccCchHHHHHHHhh
Q 037179          218 RWLC---VCGSDFKHKRSLKDHIKAF  240 (266)
Q Consensus       218 ~~~C---~C~k~F~~~~~L~~H~~~~  240 (266)
                      +|.|   .|++.+.....|..|+++.
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCEeeCCCCcCCCCChHHHHhhcccc
Confidence            4555   4666655555666666553

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.0012  Score=40.99  Aligned_cols=43  Identities=19%  Similarity=0.301  Sum_probs=38.8

Q ss_pred             CCCCChhhHHHHh-hhhcCCC------Ceecc--cccccccchhhHHHHHHH
Q 037179          172 KPLKDFRTLQTHY-KRKHGLK------PFMCR--KCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       172 k~f~~~~~l~~H~-~~h~~~k------p~~C~--~C~k~f~~~~~L~~H~~~  214 (266)
                      +.|.+...|..|+ +.|.+.+      +|.|.  .|++.+.....|..|+++
T Consensus        11 ~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A           11 ESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            8899999999998 5898876      79996  899999999999999985

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.82  E-value=0.0002  Score=50.34  Aligned_cols=30  Identities=17%  Similarity=0.349  Sum_probs=26.4

Q ss_pred             hhhcCCCCeecccccccccchhhHHHHHHH
Q 037179          185 KRKHGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       185 ~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      ..|+|++||.|..|++.|.+.+.|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            457899999999999999999999999873

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.39  E-value=0.00094  Score=46.95  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=25.1

Q ss_pred             hhhcCCCceecccccccccChhhHHhhhhhc
Q 037179          101 QILIGFTHFSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus       101 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      ..|+|+++|.|..|++.|.+...|..|+++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            4577888888888888888888888887654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.12  E-value=0.0041  Score=44.27  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=12.2

Q ss_pred             CCeecccccccccchhhHHHHH
Q 037179          191 KPFMCRKCGKFLAVKGDWRTHE  212 (266)
Q Consensus       191 kp~~C~~C~k~f~~~~~L~~H~  212 (266)
                      +++.|.+|+..|...+.+..|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHH
Confidence            3455555555555555555555

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.95  E-value=0.0015  Score=46.54  Aligned_cols=50  Identities=10%  Similarity=0.090  Sum_probs=39.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHH--Hhh------------------------------CCCCCCccCCCCCccccccccc
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHI--KAF------------------------------GSGHGPFSRPFDGVEVLDDASS  262 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~--~~~------------------------------H~~~~p~~C~~C~k~f~~~~~~  262 (266)
                      .+++.| +|...|...+.+..|.  +.|                              +.+.+.|.|.+|++.|.....+
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~  109 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVA  109 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHH
Confidence            377999 9999999999999998  331                              1235578899999999988766


Q ss_pred             ccC
Q 037179          263 SLL  265 (266)
Q Consensus       263 ~~~  265 (266)
                      ..|
T Consensus       110 ~~H  112 (127)
T 1zu1_A          110 ESH  112 (127)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.67  E-value=0.016  Score=43.41  Aligned_cols=67  Identities=15%  Similarity=0.200  Sum_probs=40.0

Q ss_pred             hhhHHHHhhhhcCCCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHhhCCCCCCc
Q 037179          177 FRTLQTHYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPF  247 (266)
Q Consensus       177 ~~~l~~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~  247 (266)
                      ...|..|+. .=.-++..|..|+..+ ....|..|....  .++-.| .|+..|.. ..|..|+.+ ++|+.++
T Consensus        96 ~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~-~~~~~~~  165 (170)
T 3hcs_A           96 LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQN-CPLALEH  165 (170)
T ss_dssp             GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTT-CCC----
T ss_pred             HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHh-CcChhhh
Confidence            345666653 2233456777787776 555677777532  566677 78777754 457788776 6776554

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.06  E-value=0.0076  Score=34.02  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=10.8

Q ss_pred             CeecccccccccchhhHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      +|.|+.|++.|.....|+.||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            4455555555544444444443

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.00  E-value=0.014  Score=33.01  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=17.1

Q ss_pred             CCcCCCCCCCCccCCCCCCCCCCCCChhhHHHHhh
Q 037179          151 LGIPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYK  185 (266)
Q Consensus       151 ~~~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~  185 (266)
                      ..+.|+.|+            ..|.....|+.||+
T Consensus        11 ~~~~CPrCn------------~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCN------------AQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTC------------CCCSSHHHHHHHHH
T ss_pred             CceeCCccc------------ccccchHHHHhhhh
Confidence            667777777            67777777777776

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.71  E-value=0.097  Score=38.98  Aligned_cols=66  Identities=17%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             CCeec--ccccccccchhhHHHHHHHh-CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCcccccc
Q 037179          191 KPFMC--RKCGKFLAVKGDWRTHEKNC-GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDD  259 (266)
Q Consensus       191 kp~~C--~~C~k~f~~~~~L~~H~~~~-~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~  259 (266)
                      -...|  ..|+..+. ...|..|.... -++..| .|+..+ .+..|..|+.. .=..++..|+.|+..|...
T Consensus        81 l~v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~-~C~~r~~~C~~C~~~~~~~  150 (170)
T 3hcs_A           81 LMVKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILK-DCPRRQVSCDNCAASMAFE  150 (170)
T ss_dssp             SEEECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHH-TCTTCEEECTTTCCEEEGG
T ss_pred             cccCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhh-hCCCCCeECCCCCCccCHH
Confidence            45667  56887665 55788898654 578899 999998 56679999975 4677888999999988754

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=88.08  E-value=0.091  Score=30.53  Aligned_cols=20  Identities=15%  Similarity=-0.052  Sum_probs=16.8

Q ss_pred             ccCCCCCcccccccccccCC
Q 037179          247 FSRPFDGVEVLDDASSSLLV  266 (266)
Q Consensus       247 ~~C~~C~k~f~~~~~~~~~~  266 (266)
                      -.|.+|+..|..+-++++||
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            68999999999888888774

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=87.68  E-value=0.23  Score=32.25  Aligned_cols=27  Identities=37%  Similarity=0.789  Sum_probs=18.4

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGP  246 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p  246 (266)
                      ..-..| +||+.|.   .|.+|++++ .|..|
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~-hgltp   46 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTH-HSMTP   46 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHT-TCSCH
T ss_pred             CCceEecccchhhH---HHHHHHHHc-cCCCH
Confidence            344678 8888887   477888883 35544

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=86.68  E-value=0.48  Score=24.86  Aligned_cols=24  Identities=21%  Similarity=0.480  Sum_probs=14.6

Q ss_pred             EEe-EcCccccCchHHHHHHHhhCC
Q 037179          219 WLC-VCGSDFKHKRSLKDHIKAFGS  242 (266)
Q Consensus       219 ~~C-~C~k~F~~~~~L~~H~~~~H~  242 (266)
                      |.| .|-+.|.....|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            556 666666666666666555554

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=86.22  E-value=0.41  Score=30.36  Aligned_cols=36  Identities=36%  Similarity=0.755  Sum_probs=21.2

Q ss_pred             eecccccccccchhhHHHHHHHhC--CCEEe-EcCccccC
Q 037179          193 FMCRKCGKFLAVKGDWRTHEKNCG--KRWLC-VCGSDFKH  229 (266)
Q Consensus       193 ~~C~~C~k~f~~~~~L~~H~~~~~--k~~~C-~C~k~F~~  229 (266)
                      |.|+.||.++. +..|..|.....  ..|.| .|++.|..
T Consensus        11 F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A           11 FTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             EEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             EEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC
Confidence            66777765543 335666655432  35667 67777764

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=83.95  E-value=0.41  Score=32.20  Aligned_cols=27  Identities=33%  Similarity=0.340  Sum_probs=16.8

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCcc
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVE  255 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~  255 (266)
                      .||+| .||..|.            -.-.+|-+|+.|+-.
T Consensus        66 ~p~~C~~CG~~F~------------~~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           66 KPAQCRKCGFVFK------------AEINIPSRCPKCKSE   93 (105)
T ss_dssp             CCCBBTTTCCBCC------------CCSSCCSSCSSSCCC
T ss_pred             ECcChhhCcCeec------------ccCCCCCCCcCCCCC
Confidence            56777 7777771            123566777777644

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=83.84  E-value=0.63  Score=24.57  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=14.6

Q ss_pred             CCEEe-EcCccccCchHHHHHHH
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIK  238 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~  238 (266)
                      .++.| .|+-+|+....+..|++
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            44566 67777777667777665

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=83.25  E-value=0.65  Score=24.35  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             CeecccccccccchhhHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      .|.|++|-+.|.+...|..|-.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHH
Confidence            4899999999999999999976

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=82.31  E-value=1.2  Score=28.30  Aligned_cols=41  Identities=22%  Similarity=0.346  Sum_probs=32.7

Q ss_pred             CEEe-EcCccccCchHHHHHHHhhCCCCCCccCCCCCccccccc
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPFDGVEVLDDA  260 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~C~k~f~~~~  260 (266)
                      -|.| .||-.+. +..|..|... -.+-..|.|--|++.|...+
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~-Cr~~~~~SCIDC~~~F~~~~   51 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSN-CRNCECLSCIDCGKDFWGDD   51 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHH-CTTCCEEEETTTTEEEEGGG
T ss_pred             EEEcCCCCCeee-cccchhHHhh-CCCCCcEEecccCCeeCCCC
Confidence            4899 9998875 5579999876 45556799999999998654

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=82.24  E-value=2.7  Score=26.22  Aligned_cols=52  Identities=15%  Similarity=0.114  Sum_probs=38.3

Q ss_pred             CCCCCCCC-CcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhh
Q 037179           76 SSNNPSAK-GNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMW  129 (266)
Q Consensus        76 ~~~~~~~C-~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~  129 (266)
                      -.-.+..| ..|+..+.. ..|..|+...-..++..|..|+..|.. ..|..|..
T Consensus        12 C~~~~v~C~~~C~~~v~r-~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~~   64 (76)
T 2yuc_A           12 CSFNVIPCPNRCPMKLSR-RDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHEG   64 (76)
T ss_dssp             CCCSCCBCTTCCSCBCCS-SSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTTT
T ss_pred             CCCcccCCCccccHHhhH-hHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHHh
Confidence            34456788 589987764 668888876666778889999998864 55777763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.65
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.64
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.32
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.3
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.27
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.26
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.24
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.21
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.2
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.2
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.18
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.18
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.17
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.14
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.12
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.12
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.1
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.06
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.03
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.01
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.01
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.0
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.98
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.97
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.92
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.89
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.89
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.88
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.82
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.72
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.67
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.66
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.66
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.58
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.5
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.48
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.47
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.43
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.37
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.36
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.33
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.29
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.19
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.15
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.09
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.02
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.95
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.93
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.84
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.81
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.74
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.73
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.71
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.65
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.57
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.53
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.48
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.45
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.45
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.38
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.36
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.35
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.28
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.27
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.23
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.17
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.16
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.09
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.08
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.05
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.96
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.72
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.67
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.6
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.51
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.49
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.47
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.39
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.32
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.24
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.2
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.13
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.96
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.93
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.86
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.64
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.57
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.53
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.03
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.85
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.83
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.64
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.52
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.28
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.27
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.04
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.68
d1y0jb1	36	U-shaped transcription factor, different fingers {	91.11
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	90.46
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.24
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.64
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	89.29
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	88.72
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.56
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	86.97
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	86.62
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	84.21
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	83.56
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	83.5
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	82.33

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.5e-17  Score=98.26  Aligned_cols=49  Identities=35%  Similarity=0.621  Sum_probs=42.3

Q ss_pred             CCCeecccccccccchhhHHHHHHHh--CCCEEe-EcCccccCchHHHHHHHh
Q 037179          190 LKPFMCRKCGKFLAVKGDWRTHEKNC--GKRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       190 ~kp~~C~~C~k~f~~~~~L~~H~~~~--~k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      ||||.| .||++|.....|..|+++|  ++||.| +||++|.+.+.|..|+++
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            688889 4999998888888888875  788889 899999999999998887

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-17  Score=99.94  Aligned_cols=53  Identities=19%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             CCCCCCCcccccccccCCCchhhhhhcCCCceecccccccccChhhHHhhhhhc
Q 037179           78 NNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus        78 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      ++||.|+ ||+.|.....|..|+++|+|++||.|..||++|.+...|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5899995 9999999999999999999999999999999999999999999987

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-15  Score=83.68  Aligned_cols=36  Identities=31%  Similarity=0.689  Sum_probs=33.6

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      +|||.| .||++|.++++|.+|++.+|+|++||+|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            799999 999999999999999975599999999985

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.5e-13  Score=75.21  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             hhhhhhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179           98 TPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus        98 ~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +|+++|++++||.|+.||++|.+.++|..|+++|+|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            6889999999999999999999999999999999864

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=3.1e-13  Score=73.47  Aligned_cols=33  Identities=24%  Similarity=0.565  Sum_probs=30.1

Q ss_pred             HhhhhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          183 HYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       183 H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |.|+|+|||||+|.+||++|.++++|.+|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            678999999999999999999999999998876

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.3e-13  Score=69.24  Aligned_cols=33  Identities=30%  Similarity=0.431  Sum_probs=29.7

Q ss_pred             hhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          102 ILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       102 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +|+|++||.|..||++|.+.++|..|+++|+|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            589999999999999999999999999999763

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-12  Score=70.34  Aligned_cols=31  Identities=29%  Similarity=0.516  Sum_probs=24.1

Q ss_pred             hhhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          185 KRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       185 ~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |+|+|+|||+|.+||++|...+.|..|+++|
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H   31 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY   31 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCccc
Confidence            5688888888888887777777777777765

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6.3e-13  Score=72.72  Aligned_cols=34  Identities=18%  Similarity=0.434  Sum_probs=24.1

Q ss_pred             HHhhhhcCCCCeecccccccccchhhHHHHHHHh
Q 037179          182 THYKRKHGLKPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       182 ~H~~~h~~~kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      +|+++|+++|||.|++|||+|...+.|..|+++|
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~H   35 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH   35 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTT
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccC
Confidence            4777888888888887776666666666666554

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.5e-12  Score=67.37  Aligned_cols=28  Identities=29%  Similarity=0.616  Sum_probs=14.1

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      +|||.| +||++|.+++.|..|+++ |+||
T Consensus         5 ekpy~C~~Cgk~F~~~~~L~~H~r~-HtgE   33 (33)
T d1x6ea1           5 EKPYGCVECGKAFSRSSILVQHQRV-HTGE   33 (33)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHG-GGCS
T ss_pred             CCCeeCCCCCCEeCchHHhHhhccc-cCCC
Confidence            444444 455555555555555554 4543

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.20  E-value=2.2e-12  Score=65.64  Aligned_cols=28  Identities=25%  Similarity=0.683  Sum_probs=25.8

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      |||.| +||++|.+++.|.+|+++ |+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~-HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT-TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc-ccCCC
Confidence            68999 999999999999999998 89986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.8e-12  Score=65.14  Aligned_cols=27  Identities=30%  Similarity=0.732  Sum_probs=22.6

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~  243 (266)
                      ||||.| +|+|+|.++++|.+|+++ |+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~-HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT-HTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH-HHC
T ss_pred             CcCccCCCCcCEecccccccccCCC-ccC
Confidence            688888 888888888888888888 665

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.4e-13  Score=72.28  Aligned_cols=37  Identities=8%  Similarity=0.092  Sum_probs=32.4

Q ss_pred             CCCCCCCCcccccccccCCCchhhh-hhcCCCceeccc
Q 037179           77 SNNPSAKGNANVAAAKQYWIPTPEQ-ILIGFTHFSCHV  113 (266)
Q Consensus        77 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~k~~~C~~  113 (266)
                      .++||.|+.||+.|...++|.+|++ +|++++||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999999999999999975 799999999864

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=2.7e-12  Score=69.65  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=31.8

Q ss_pred             hhhhhcCCCceecccccccccChhhHHhhhhhcC
Q 037179           99 PEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus        99 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      |.|+|+|++||.|..|++.|.++++|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            6789999999999999999999999999999984

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.1e-12  Score=68.41  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=31.0

Q ss_pred             hhhcCCCceecccccccccChhhHHhhhhhcCCC
Q 037179          101 QILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       101 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      |+|+|++||+|.+||++|.++++|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5799999999999999999999999999999753

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3e-12  Score=65.01  Aligned_cols=28  Identities=29%  Similarity=0.602  Sum_probs=25.4

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      |||.| +||++|.+++.|.+|+++ |+||+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~-HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT-HQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG-GGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc-cCCcC
Confidence            68999 999999999999999998 89885

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.7e-12  Score=67.23  Aligned_cols=32  Identities=34%  Similarity=0.730  Sum_probs=29.8

Q ss_pred             EEe-E--cCccccCchHHHHHHHhhCCCCCCccCCC
Q 037179          219 WLC-V--CGSDFKHKRSLKDHIKAFGSGHGPFSRPF  251 (266)
Q Consensus       219 ~~C-~--C~k~F~~~~~L~~H~~~~H~~~~p~~C~~  251 (266)
                      |.| .  ||++|.+++.|++|+++ |+|++||.|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~-Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL-HSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH-HHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCe-eCCCCCEeCCC
Confidence            788 4  99999999999999999 89999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.5e-11  Score=65.28  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=28.6

Q ss_pred             hcCCCceecccccccccChhhHHhhhhhcCC
Q 037179          103 LIGFTHFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       103 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      |+|++||+|.+|++.|.++++|.+|+++|++
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            6899999999999999999999999999975

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.2e-11  Score=65.56  Aligned_cols=25  Identities=28%  Similarity=0.639  Sum_probs=13.1

Q ss_pred             hCCCEEe-EcCccccCchHHHHHHHh
Q 037179          215 CGKRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       215 ~~k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      ++|||.| +|++.|.++++|.+|+++
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCccccCCCCCCcccChHHHHHHccc
Confidence            3445555 555555555555555554

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.8e-11  Score=65.66  Aligned_cols=29  Identities=24%  Similarity=0.516  Sum_probs=21.1

Q ss_pred             hhhcCCCCeecccccccccchhhHHHHHH
Q 037179          185 KRKHGLKPFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       185 ~~h~~~kp~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      |+|+|||||+|++||++|.++++|..|++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcc
Confidence            46777888888777777777777777754

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.6e-11  Score=59.95  Aligned_cols=23  Identities=30%  Similarity=0.742  Sum_probs=16.4

Q ss_pred             CCEEe-EcCccccCchHHHHHHHh
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      |||+| +|||+|.+++.|.+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccC
Confidence            56777 777777777777777776

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.8e-11  Score=60.67  Aligned_cols=28  Identities=29%  Similarity=0.758  Sum_probs=24.2

Q ss_pred             CCceecccccccccChhhHHhhhhhcCC
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      ||||+|..|++.|.++++|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5889999999999999999999988864

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.1e-11  Score=64.27  Aligned_cols=32  Identities=19%  Similarity=0.522  Sum_probs=28.2

Q ss_pred             hhhcCCCceecccccccccChhhHHhhhhhcC
Q 037179          101 QILIGFTHFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       101 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      |+|+|++||.|+.|++.|.++++|..|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            57999999999999999999999999976543

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.6e-11  Score=57.51  Aligned_cols=25  Identities=28%  Similarity=0.675  Sum_probs=23.7

Q ss_pred             CCeecccccccccchhhHHHHHHHh
Q 037179          191 KPFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       191 kp~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      |||+|++|||+|...+.|.+|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            7999999999999999999999976

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.00  E-value=7.1e-11  Score=59.93  Aligned_cols=28  Identities=32%  Similarity=0.729  Sum_probs=22.9

Q ss_pred             CceecccccccccChhhHHhhhhhcCCC
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +||.|++|++.|.+.++|.+|+++|+|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            5788888888888888888888888765

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=4.8e-11  Score=68.04  Aligned_cols=40  Identities=28%  Similarity=0.345  Sum_probs=34.0

Q ss_pred             CCCchhhhhhcCCCceeccc--ccccccChhhHHhhhhhcCCC
Q 037179           94 YWIPTPEQILIGFTHFSCHV--CFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus        94 ~~l~~H~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      ..|..|+. |++++||.|.+  |++.|.+.++|..|+++|+|+
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            45667774 99999999987  999999999999999999875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9e-11  Score=59.41  Aligned_cols=28  Identities=32%  Similarity=0.632  Sum_probs=20.8

Q ss_pred             CceecccccccccChhhHHhhhhhcCCC
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      |||.|++|++.|.++++|.+|+++|+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            5677777777777777777777777654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.8e-10  Score=58.61  Aligned_cols=27  Identities=26%  Similarity=0.667  Sum_probs=24.2

Q ss_pred             CCEEe-E--cCccccCchHHHHHHHhhCCCC
Q 037179          217 KRWLC-V--CGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       217 k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      |||.| .  ||++|.+++.|.+|+++ |+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS-HTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH-TTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc-CcCC
Confidence            68999 6  99999999999999998 8886

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2e-10  Score=58.62  Aligned_cols=27  Identities=30%  Similarity=0.765  Sum_probs=24.0

Q ss_pred             CCEEe-E--cCccccCchHHHHHHHhhCCCC
Q 037179          217 KRWLC-V--CGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       217 k~~~C-~--C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      |||.| .  ||++|.+++.|.+|+|+ |+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~-HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI-HTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH-HHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccc-cCCC
Confidence            68999 5  99999999999999998 7886

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=4.3e-11  Score=68.26  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             hHHHHhhhhcCCCCeeccc--ccccccchhhHHHHHHH
Q 037179          179 TLQTHYKRKHGLKPFMCRK--CGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       179 ~l~~H~~~h~~~kp~~C~~--C~k~f~~~~~L~~H~~~  214 (266)
                      .|..|++ |+|++||.|.+  ||++|...+.|..|+++
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccc
Confidence            4455553 67777777755  55555554444444444

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.6e-10  Score=58.69  Aligned_cols=28  Identities=25%  Similarity=0.745  Sum_probs=25.2

Q ss_pred             CCEEe---EcCccccCchHHHHHHHhhCCCCC
Q 037179          217 KRWLC---VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       217 k~~~C---~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      |||.|   .||++|.+.++|.+|+++ |+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~-HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT-TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc-ccccC
Confidence            68999   499999999999999998 89986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.4e-10  Score=59.32  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=23.6

Q ss_pred             CCCCChhhHHHHhhhhcCCCCeecc
Q 037179          172 KPLKDFRTLQTHYKRKHGLKPFMCR  196 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~kp~~C~  196 (266)
                      +.|...+.|++|+++|+|+|||.|+
T Consensus        11 k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2          11 KSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             CEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CeeCChhHhccccCeeCCCCCEeCC
Confidence            8999999999999999999999996

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.3e-09  Score=54.41  Aligned_cols=28  Identities=29%  Similarity=0.693  Sum_probs=22.5

Q ss_pred             Cceeccc--ccccccChhhHHhhhhhcCCC
Q 037179          107 THFSCHV--CFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       107 k~~~C~~--C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      |||.|.+  |+++|.+.++|.+|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5788877  888888888888888888763

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.5e-09  Score=54.38  Aligned_cols=28  Identities=32%  Similarity=0.513  Sum_probs=22.6

Q ss_pred             Cceeccc--ccccccChhhHHhhhhhcCCC
Q 037179          107 THFSCHV--CFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       107 k~~~C~~--C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      |||.|.+  |+++|.+.++|.+|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5788876  888888888888888888753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=2.1e-09  Score=54.05  Aligned_cols=26  Identities=31%  Similarity=0.779  Sum_probs=21.5

Q ss_pred             CCEEe-E--cCccccCchHHHHHHHhhCCC
Q 037179          217 KRWLC-V--CGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       217 k~~~C-~--C~k~F~~~~~L~~H~~~~H~~  243 (266)
                      |||.| .  |+|+|.+.+.|.+|+++ |+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~-HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI-HTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH-HHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc-cCC
Confidence            68888 4  88888888889998888 665

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=5.2e-09  Score=53.93  Aligned_cols=27  Identities=22%  Similarity=0.500  Sum_probs=20.8

Q ss_pred             CCCEEe-E--cCccccCchHHHHHHHhhCCC
Q 037179          216 GKRWLC-V--CGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       216 ~k~~~C-~--C~k~F~~~~~L~~H~~~~H~~  243 (266)
                      ||||.| .  |+++|.+.++|.+|+++ |+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~-Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKS-HQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG-GTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhh-ccC
Confidence            577888 5  88888888888888887 554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.2e-08  Score=52.30  Aligned_cols=28  Identities=36%  Similarity=0.608  Sum_probs=22.6

Q ss_pred             Cceecc--cccccccChhhHHhhhhhcCCC
Q 037179          107 THFSCH--VCFKTFNRYNNLQMHMWGHGSQ  134 (266)
Q Consensus       107 k~~~C~--~C~k~F~~~~~L~~H~~~h~~~  134 (266)
                      +||.|+  .|++.|.+.++|.+|+++|+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            578885  4888888888888888888765

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=3.1e-08  Score=50.93  Aligned_cols=28  Identities=32%  Similarity=0.487  Sum_probs=24.0

Q ss_pred             CCceeccc--ccccccChhhHHhhhhhcCC
Q 037179          106 FTHFSCHV--CFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       106 ~k~~~C~~--C~k~F~~~~~L~~H~~~h~~  133 (266)
                      ++||.|.+  |++.|.+.++|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            57899987  99999999999999998863

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.6e-08  Score=50.79  Aligned_cols=27  Identities=30%  Similarity=0.628  Sum_probs=22.6

Q ss_pred             Cceeccc--ccccccChhhHHhhhhhcCC
Q 037179          107 THFSCHV--CFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       107 k~~~C~~--C~k~F~~~~~L~~H~~~h~~  133 (266)
                      |||.|.+  |++.|.+.++|.+|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5888877  88999999999999888854

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.2e-08  Score=50.61  Aligned_cols=23  Identities=30%  Similarity=0.820  Sum_probs=17.2

Q ss_pred             CCEEe-E--cCccccCchHHHHHHHh
Q 037179          217 KRWLC-V--CGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       217 k~~~C-~--C~k~F~~~~~L~~H~~~  239 (266)
                      |||.| .  |||+|.+.++|++|+++
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            57777 3  77777777777777777

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.8e-08  Score=48.79  Aligned_cols=25  Identities=24%  Similarity=0.589  Sum_probs=23.0

Q ss_pred             CCeeccc--ccccccchhhHHHHHHHh
Q 037179          191 KPFMCRK--CGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       191 kp~~C~~--C~k~f~~~~~L~~H~~~~  215 (266)
                      |||.|+.  |||+|.+.++|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            6899987  999999999999999976

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9.6e-08  Score=43.97  Aligned_cols=26  Identities=38%  Similarity=0.687  Sum_probs=22.1

Q ss_pred             ceecccccccccChhhHHhhhhhcCC
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      |++|+.|++.|+++..|..|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56789999999999999999988864

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.2e-08  Score=44.86  Aligned_cols=25  Identities=40%  Similarity=0.832  Sum_probs=20.4

Q ss_pred             CEEe-EcCccccCchHHHHHHHhhCCC
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~H~~  243 (266)
                      |++| +|+|.|+++..|..|+|. |+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~-htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRC-HTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG-CCC
T ss_pred             CCccchhhhHhcchhHHHHHhhc-cCC
Confidence            5678 888888888888888887 665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.1e-07  Score=47.13  Aligned_cols=31  Identities=35%  Similarity=0.702  Sum_probs=27.0

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCCCcc
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHGPFS  248 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~p~~  248 (266)
                      +...| .|||.|.....|.+|... |+||+||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhkls-hs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLS-HSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG-SCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcc-cCCCCCCC
Confidence            55778 899999999999999887 89999983

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.5e-07  Score=44.80  Aligned_cols=24  Identities=33%  Similarity=0.731  Sum_probs=15.4

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHh
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      ||||.| +||+.|.++....+|.++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh
Confidence            456666 666666666666666665

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1.7e-07  Score=44.61  Aligned_cols=27  Identities=33%  Similarity=0.589  Sum_probs=24.3

Q ss_pred             CCCeecccccccccchhhHHHHHHHhC
Q 037179          190 LKPFMCRKCGKFLAVKGDWRTHEKNCG  216 (266)
Q Consensus       190 ~kp~~C~~C~k~f~~~~~L~~H~~~~~  216 (266)
                      ||||.|++||+.|.......+|.++|-
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999988774

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.3e-07  Score=43.04  Aligned_cols=26  Identities=31%  Similarity=0.620  Sum_probs=21.7

Q ss_pred             CEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      .+.| .|||+|..++.|++|+.+ |+||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lv-htge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLV-HTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG-TSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhc-ccCC
Confidence            4678 899999999999999887 7875

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.1e-08  Score=47.77  Aligned_cols=30  Identities=10%  Similarity=-0.022  Sum_probs=20.2

Q ss_pred             CCCCCcccccccccCCCchhhhhhcCCCce
Q 037179           80 PSAKGNANVAAAKQYWIPTPEQILIGFTHF  109 (266)
Q Consensus        80 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~  109 (266)
                      ...|+.||+.|...+.|.+|...|+++|||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            345667777777666677776667776665

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.1e-07  Score=43.11  Aligned_cols=25  Identities=28%  Similarity=0.699  Sum_probs=21.8

Q ss_pred             CCEEe---EcCccccCchHHHHHHHhhC
Q 037179          217 KRWLC---VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       217 k~~~C---~C~k~F~~~~~L~~H~~~~H  241 (266)
                      |||.|   .|+|++...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            68999   39999999999999999855

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.4e-06  Score=41.08  Aligned_cols=28  Identities=18%  Similarity=0.559  Sum_probs=24.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      ++||+| .|...-..++.|..|+|. |+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~-htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRS-HTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT-CCSC
T ss_pred             CCcceeeecccccCCchheEEeeec-ccCc
Confidence            578999 899998899999999998 7874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.8e-06  Score=41.67  Aligned_cols=27  Identities=37%  Similarity=0.818  Sum_probs=20.4

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGSG  243 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~~  243 (266)
                      ||||.| +|+..|.++.-+.-|.|. |.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs-hdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS-HDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH-HSC
T ss_pred             CCCcccchHHHHhhccccceEeeec-ccC
Confidence            577888 888888888888888877 454

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7.6e-07  Score=46.63  Aligned_cols=27  Identities=26%  Similarity=0.689  Sum_probs=20.6

Q ss_pred             cCCCCeecccccccccchhhHHHHHHH
Q 037179          188 HGLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       188 ~~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      +|-|||.|..|+|.|....++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            466788888888888888888777764

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.3e-06  Score=41.27  Aligned_cols=28  Identities=29%  Similarity=0.582  Sum_probs=25.2

Q ss_pred             CCceecccccccccChhhHHhhhhhcCC
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      ++||.|++|...|+++..+.-|.+.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            5899999999999999999999999865

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.1e-06  Score=39.87  Aligned_cols=29  Identities=31%  Similarity=0.440  Sum_probs=24.4

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      |||+| .|...-...++|+.|+++.|..++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhskek   30 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccccccccccccchhhhhhhhcccccCC
Confidence            68888 898888889999999988887664

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4e-06  Score=39.72  Aligned_cols=27  Identities=30%  Similarity=0.651  Sum_probs=22.9

Q ss_pred             CEEe-EcCccccCchHHHHHHHhhCCCCC
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      .|.| .||......+-|++|+|+ |++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRs-HT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRT-HTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-TSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHH-hcCCC
Confidence            3788 899999999999999998 78874

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=6.6e-06  Score=38.50  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             eecccccccccChhhHHhhhhhcCC
Q 037179          109 FSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       109 ~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      +.|..||++|...+.|++|+.+|+|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            5688899999888889999888875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.1e-05  Score=37.95  Aligned_cols=28  Identities=21%  Similarity=0.476  Sum_probs=24.9

Q ss_pred             CCceecccccccccChhhHHhhhhhcCC
Q 037179          106 FTHFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       106 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      ++||+|..|...-...+.|..|+|.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            5789999999998999999999999975

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.73  E-value=6.4e-06  Score=40.05  Aligned_cols=27  Identities=26%  Similarity=0.631  Sum_probs=23.8

Q ss_pred             CEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      ||.| +|++.|+++.-|.+|++..|.|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcCc
Confidence            7899 99999999999999988878764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.2e-05  Score=37.43  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=18.0

Q ss_pred             CCEEe-EcCccccCchHHHHHHHh
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      |||+| .|...-...++|.+|+|+
T Consensus         2 kp~kck~cdyaaadsssl~kh~ri   25 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRI   25 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccccccchhcchhhHhhhhhc
Confidence            67777 777777777888888777

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.1e-05  Score=37.55  Aligned_cols=26  Identities=19%  Similarity=0.401  Sum_probs=24.4

Q ss_pred             CceecccccccccChhhHHhhhhhcC
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      +||+|..|+..-...++|+.|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999984

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=1.3e-05  Score=36.94  Aligned_cols=25  Identities=32%  Similarity=0.526  Sum_probs=21.2

Q ss_pred             Ee-EcCccccCchHHHHHHHhhCCCCC
Q 037179          220 LC-VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       220 ~C-~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      +| .|.+.|.++..|+.|-|. |+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~-htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK-HTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH-HSSCC
T ss_pred             cCcchHHHHHHhHhhhhcccc-ccCCC
Confidence            57 888999999999999888 78875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.53  E-value=1.2e-05  Score=36.37  Aligned_cols=21  Identities=29%  Similarity=0.743  Sum_probs=17.7

Q ss_pred             EEe-EcCccccCchHHHHHHHh
Q 037179          219 WLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       219 ~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      |+| .|.++|..++.|.+|+|+
T Consensus         1 ykcglcersfveksalsrhqrv   22 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV   22 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHHh
Confidence            678 888888888888888887

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.6e-05  Score=40.70  Aligned_cols=26  Identities=23%  Similarity=0.634  Sum_probs=23.6

Q ss_pred             cCCCceecccccccccChhhHHhhhh
Q 037179          104 IGFTHFSCHVCFKTFNRYNNLQMHMW  129 (266)
Q Consensus       104 ~~~k~~~C~~C~k~F~~~~~L~~H~~  129 (266)
                      +|-|||.|..|+|.|-+..++.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            47799999999999999999999964

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=6.3e-05  Score=35.51  Aligned_cols=27  Identities=19%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCC
Q 037179          153 IPCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLK  191 (266)
Q Consensus       153 ~~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~k  191 (266)
                      |.|..|+            ......+.|+.|+|.|++++
T Consensus         2 YvC~~Cg------------~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECG------------IRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTC------------CBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccC------------cccCCHHHHHHHHHHhcCCC
Confidence            6678888            55566778888888888764

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.45  E-value=3.2e-05  Score=35.00  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=21.3

Q ss_pred             eecccccccccChhhHHhhhhhc
Q 037179          109 FSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus       109 ~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      |+|..|.+.|..++.|.+|+++|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            67999999999999999999988

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=8.4e-05  Score=34.13  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=22.6

Q ss_pred             CCCCCCCCccCCCCCCCCCCCCChhhHHHHhhhhcCCC
Q 037179          154 PCYCCAEGCKNSINHPKAKPLKDFRTLQTHYKRKHGLK  191 (266)
Q Consensus       154 ~C~~C~~~~~~~~~~~~~k~f~~~~~l~~H~~~h~~~k  191 (266)
                      +|+.|.            +.|.++.-|+.|-|.|+|+|
T Consensus         2 qcp~c~------------k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCH------------KKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTC------------CCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchH------------HHHHHhHhhhhccccccCCC
Confidence            588888            88999999999999999885

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=3.3e-05  Score=37.50  Aligned_cols=26  Identities=23%  Similarity=0.562  Sum_probs=17.7

Q ss_pred             CCEEe---EcCccccCchHHHHHH-HhhCCC
Q 037179          217 KRWLC---VCGSDFKHKRSLKDHI-KAFGSG  243 (266)
Q Consensus       217 k~~~C---~C~k~F~~~~~L~~H~-~~~H~~  243 (266)
                      |||.|   .|.|+|+..+.-.+|+ |+ |..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT-Hs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT-HSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT-TCS
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc-ccC
Confidence            57777   3777777777777776 55 543

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.35  E-value=4.5e-05  Score=35.91  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=17.9

Q ss_pred             CCEEe---EcCccccCchHHHHHHHh
Q 037179          217 KRWLC---VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       217 k~~~C---~C~k~F~~~~~L~~H~~~  239 (266)
                      .||.|   .|+++|...+.|++|.++
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhc
Confidence            47777   488888888888888776

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=7.4e-05  Score=35.90  Aligned_cols=26  Identities=19%  Similarity=0.475  Sum_probs=22.2

Q ss_pred             Cceeccc--ccccccChhhHHhhhhhcC
Q 037179          107 THFSCHV--CFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       107 k~~~C~~--C~k~F~~~~~L~~H~~~h~  132 (266)
                      |||.|..  |++.++..++|.+|++.++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            5888877  8999999999999998654

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.27  E-value=5.5e-05  Score=35.76  Aligned_cols=27  Identities=26%  Similarity=0.513  Sum_probs=22.9

Q ss_pred             CCEEe---EcCccccCchHHHHHHHhhCCCC
Q 037179          217 KRWLC---VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       217 k~~~C---~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      +||.|   -|.|.|.....|.+|..+ |+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~t-htge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLT-HTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHH-HHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhcc-ccCC
Confidence            58888   499999999999999888 7775

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=6.6e-05  Score=35.44  Aligned_cols=22  Identities=36%  Similarity=0.783  Sum_probs=18.5

Q ss_pred             CEEe-EcCccccCchHHHHHHHh
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      ||.| .|..+|..+.+|.+||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            6888 888888888888888875

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=7.4e-05  Score=36.23  Aligned_cols=25  Identities=32%  Similarity=0.781  Sum_probs=22.5

Q ss_pred             CCeeccc--ccccccchhhHHHHH-HHh
Q 037179          191 KPFMCRK--CGKFLAVKGDWRTHE-KNC  215 (266)
Q Consensus       191 kp~~C~~--C~k~f~~~~~L~~H~-~~~  215 (266)
                      |||.|..  |.|+|...++...|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            6999987  999999999999998 666

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=9.1e-05  Score=34.95  Aligned_cols=24  Identities=29%  Similarity=0.565  Sum_probs=22.0

Q ss_pred             ceecccccccccChhhHHhhhhhc
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWGH  131 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~h  131 (266)
                      ||.|..|...|.++.+|..|+..-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999754

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.09  E-value=0.00016  Score=37.48  Aligned_cols=22  Identities=23%  Similarity=0.776  Sum_probs=11.8

Q ss_pred             CEEe-EcCccccCchHHHHHHHh
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      .|.| .|++.|.+...|--||+.
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~   27 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNV   27 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHT
T ss_pred             ccCCCCCCCccCCcccccchHhh
Confidence            4555 555555555555555554

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.08  E-value=0.00021  Score=33.55  Aligned_cols=25  Identities=28%  Similarity=0.626  Sum_probs=21.7

Q ss_pred             CCeeccc--ccccccchhhHHHHHHHh
Q 037179          191 KPFMCRK--CGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       191 kp~~C~~--C~k~f~~~~~L~~H~~~~  215 (266)
                      .||+|..  |++.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5899964  999999999999998865

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.05  E-value=0.00021  Score=37.01  Aligned_cols=27  Identities=11%  Similarity=0.233  Sum_probs=23.4

Q ss_pred             CCCeecccccccccchhhHHHHHHHhC
Q 037179          190 LKPFMCRKCGKFLAVKGDWRTHEKNCG  216 (266)
Q Consensus       190 ~kp~~C~~C~k~f~~~~~L~~H~~~~~  216 (266)
                      .+.|+|.+|++.|.+.-.|-.|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            457999999999999999999998874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00021  Score=33.74  Aligned_cols=25  Identities=32%  Similarity=0.684  Sum_probs=18.6

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H  241 (266)
                      +||+| .|...-.+.++|..|++..|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            47777 77777777778888877655

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00051  Score=30.93  Aligned_cols=21  Identities=29%  Similarity=0.797  Sum_probs=11.5

Q ss_pred             CEEe-EcCccccCchHHHHHHH
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIK  238 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~  238 (266)
                      ||+| .|...|.++..|..||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            4555 55555555555555553

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.00059  Score=32.02  Aligned_cols=27  Identities=26%  Similarity=0.699  Sum_probs=18.5

Q ss_pred             CCEEe-EcCccccCchHHHHHHHhhCCCC
Q 037179          217 KRWLC-VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       217 k~~~C-~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      .-|.| .|...|.++-.|+.||-. |+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvs-htge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVS-HTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH-HSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeec-ccCC
Confidence            45667 777777777777777776 5664

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.0007  Score=31.25  Aligned_cols=22  Identities=45%  Similarity=0.809  Sum_probs=12.5

Q ss_pred             CeecccccccccchhhHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      ||+|..|||.+..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4556666665555555555543

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.51  E-value=0.00072  Score=32.66  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=20.8

Q ss_pred             CeecccccccccchhhHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      ||.|.+|++.|....-|.+|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            7999999999999999999986

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00075  Score=34.59  Aligned_cols=24  Identities=33%  Similarity=0.695  Sum_probs=17.0

Q ss_pred             CCCEEe---EcCccccCchHHHHHHHh
Q 037179          216 GKRWLC---VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       216 ~k~~~C---~C~k~F~~~~~L~~H~~~  239 (266)
                      +|||.|   -|+.+|.+...|..|...
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhh
Confidence            567777   377777777777777766

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.47  E-value=0.00056  Score=32.24  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             Cceeccc--ccccccChhhHHhhhhhcCC
Q 037179          107 THFSCHV--CFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       107 k~~~C~~--C~k~F~~~~~L~~H~~~h~~  133 (266)
                      +||.|..  |.+.|.....|.+|...|+|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhccccC
Confidence            4666755  77888888888888777754

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0012  Score=29.68  Aligned_cols=22  Identities=27%  Similarity=0.671  Sum_probs=20.4

Q ss_pred             CeecccccccccchhhHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      ||+|..|...|.++.+|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999985

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0013  Score=31.09  Aligned_cols=24  Identities=29%  Similarity=0.474  Sum_probs=22.2

Q ss_pred             CCeecccccccccchhhHHHHHHH
Q 037179          191 KPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       191 kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      |||.|..|.......++|+.|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            689999999999999999999986

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0015  Score=30.65  Aligned_cols=27  Identities=41%  Similarity=0.795  Sum_probs=19.9

Q ss_pred             CceecccccccccChhhHHhhhhhcCC
Q 037179          107 THFSCHVCFKTFNRYNNLQMHMWGHGS  133 (266)
Q Consensus       107 k~~~C~~C~k~F~~~~~L~~H~~~h~~  133 (266)
                      .-|.|..|...|.+.-.|..|+..|+|
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccC
Confidence            347777777777777777777777765

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.001  Score=30.71  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=19.0

Q ss_pred             CEEe-EcCccccCchHHHHHHHh
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      ||+| .|||.+-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            7889 999999999999988764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.002  Score=30.34  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=21.5

Q ss_pred             CCeecccccccccchhhHHHHHHH
Q 037179          191 KPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       191 kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      +||+|+.|...-.+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            589999999999999999999873

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.96  E-value=0.0019  Score=29.09  Aligned_cols=23  Identities=26%  Similarity=0.691  Sum_probs=18.6

Q ss_pred             EEe-EcCccccCchHHHHHHHhhC
Q 037179          219 WLC-VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       219 ~~C-~C~k~F~~~~~L~~H~~~~H  241 (266)
                      |.| .|-+.|.++.++..|.++.|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            678 88888888888888888765

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0032  Score=32.16  Aligned_cols=28  Identities=25%  Similarity=0.603  Sum_probs=24.4

Q ss_pred             CCCCeecc--cccccccchhhHHHHHHHhC
Q 037179          189 GLKPFMCR--KCGKFLAVKGDWRTHEKNCG  216 (266)
Q Consensus       189 ~~kp~~C~--~C~k~f~~~~~L~~H~~~~~  216 (266)
                      .+|||.|.  -|+..|.+...|..|+..|+
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            48999994  59999999999999988764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0028  Score=31.68  Aligned_cols=19  Identities=32%  Similarity=0.527  Sum_probs=18.0

Q ss_pred             CCCCChhhHHHHhhhhcCC
Q 037179          172 KPLKDFRTLQTHYKRKHGL  190 (266)
Q Consensus       172 k~f~~~~~l~~H~~~h~~~  190 (266)
                      ++|.....|..|+|+|+||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            8899999999999999986

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0011  Score=33.24  Aligned_cols=26  Identities=27%  Similarity=0.639  Sum_probs=20.3

Q ss_pred             CEEe---EcC---ccccCchHHHHHHHhhCCCC
Q 037179          218 RWLC---VCG---SDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       218 ~~~C---~C~---k~F~~~~~L~~H~~~~H~~~  244 (266)
                      .|.|   .|.   +.|.....|..|+|+ |+||
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~-HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHH-HHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhh-cCCC
Confidence            4566   464   559999999999998 7886

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0024  Score=31.50  Aligned_cols=22  Identities=23%  Similarity=0.795  Sum_probs=18.6

Q ss_pred             CEEe-EcCccccCchHHHHHHHh
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      .|.| .|||.|.++..+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            4788 899999999888888765

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0039  Score=33.51  Aligned_cols=24  Identities=29%  Similarity=0.540  Sum_probs=16.0

Q ss_pred             CeecccccccccchhhHHHHHHHh
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEKNC  215 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~~~  215 (266)
                      .|.|..|||.|.....|++|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            356777777777777777776644

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0058  Score=30.10  Aligned_cols=23  Identities=35%  Similarity=0.793  Sum_probs=20.6

Q ss_pred             CeecccccccccchhhHHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      .|.|..|||.|.....+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            58999999999999999999764

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0088  Score=27.65  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=22.2

Q ss_pred             ceecccccccccChhhHHhhhhhcC
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      |-+|..|......+..|..|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4679999999999999999999984

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.83  E-value=0.0041  Score=28.48  Aligned_cols=21  Identities=38%  Similarity=0.812  Sum_probs=17.8

Q ss_pred             EEe---EcCccccCchHHHHHHHh
Q 037179          219 WLC---VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       219 ~~C---~C~k~F~~~~~L~~H~~~  239 (266)
                      |.|   .|++.|.....|+.|+.+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~   25 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFS   25 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeec
Confidence            677   499999998899999887

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0053  Score=32.96  Aligned_cols=25  Identities=36%  Similarity=0.630  Sum_probs=22.7

Q ss_pred             ceecccccccccChhhHHhhhhhcC
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWGHG  132 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~h~  132 (266)
                      .|.|..|+|.|+....|.+|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4789999999999999999998884

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.01  Score=27.39  Aligned_cols=20  Identities=25%  Similarity=0.483  Sum_probs=10.3

Q ss_pred             Ee-EcCccccCchHHHHHHHh
Q 037179          220 LC-VCGSDFKHKRSLKDHIKA  239 (266)
Q Consensus       220 ~C-~C~k~F~~~~~L~~H~~~  239 (266)
                      +| .|..+...+..|+.|.|+
T Consensus         4 kc~ecsyscsskaalrvh~ri   24 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERI   24 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGG
T ss_pred             cCcccccccCcHHHHHHhhcc
Confidence            34 455555555555555554

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.52  E-value=0.0078  Score=28.70  Aligned_cols=27  Identities=30%  Similarity=0.850  Sum_probs=23.0

Q ss_pred             CCEEe---EcCccccCchHHHHHHHhhCCCC
Q 037179          217 KRWLC---VCGSDFKHKRSLKDHIKAFGSGH  244 (266)
Q Consensus       217 k~~~C---~C~k~F~~~~~L~~H~~~~H~~~  244 (266)
                      |.|.|   .|+..|+....|..|+-. |+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLck-HTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSK-HTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHH-HHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhh-hcCC
Confidence            67888   599999999999999987 7875

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.28  E-value=0.011  Score=26.52  Aligned_cols=22  Identities=36%  Similarity=0.839  Sum_probs=19.4

Q ss_pred             eecccccccccChhhHHhhhhh
Q 037179          109 FSCHVCFKTFNRYNNLQMHMWG  130 (266)
Q Consensus       109 ~~C~~C~k~F~~~~~L~~H~~~  130 (266)
                      |.|+.|-+.|+++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999988764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.015  Score=26.75  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=12.8

Q ss_pred             EEe-EcCccccCchHHHHHHHhhC
Q 037179          219 WLC-VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       219 ~~C-~C~k~F~~~~~L~~H~~~~H  241 (266)
                      |.| .|+-...+++.|..|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            455 55555555555555555433

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.034  Score=25.54  Aligned_cols=23  Identities=30%  Similarity=0.647  Sum_probs=19.1

Q ss_pred             CeecccccccccchhhHHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      .|.|+.|+.....+++|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            37888898888889999888873

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.68  E-value=0.023  Score=27.59  Aligned_cols=21  Identities=33%  Similarity=0.841  Sum_probs=13.5

Q ss_pred             CEEe-EcCccccCchHHHHHHH
Q 037179          218 RWLC-VCGSDFKHKRSLKDHIK  238 (266)
Q Consensus       218 ~~~C-~C~k~F~~~~~L~~H~~  238 (266)
                      .|.| -||-.|...+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            3566 66677776666666653

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.11  E-value=0.05  Score=26.37  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=17.5

Q ss_pred             CeecccccccccchhhHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      .|.|.-||-.|...+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4778888888888888888764

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.46  E-value=0.098  Score=25.66  Aligned_cols=22  Identities=14%  Similarity=0.495  Sum_probs=10.5

Q ss_pred             CeecccccccccchhhHHHHHH
Q 037179          192 PFMCRKCGKFLAVKGDWRTHEK  213 (266)
Q Consensus       192 p~~C~~C~k~f~~~~~L~~H~~  213 (266)
                      .|+|.+|.+.+...+++-+|-.
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             EEEeehhhHHHHHHHHHHHHHH
Confidence            3445555444444444444443

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.073  Score=24.54  Aligned_cols=19  Identities=16%  Similarity=0.560  Sum_probs=15.0

Q ss_pred             EcCccccCchHHHHHHHhh
Q 037179          222 VCGSDFKHKRSLKDHIKAF  240 (266)
Q Consensus       222 ~C~k~F~~~~~L~~H~~~~  240 (266)
                      .|+|.|...+.+++|+.+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            4888888888888888773

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.037  Score=32.70  Aligned_cols=20  Identities=30%  Similarity=0.677  Sum_probs=10.6

Q ss_pred             EEe-EcCccccCchHHHHHHH
Q 037179          219 WLC-VCGSDFKHKRSLKDHIK  238 (266)
Q Consensus       219 ~~C-~C~k~F~~~~~L~~H~~  238 (266)
                      |.| .|+|.|.+...|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            445 55555555555555543

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.29  E-value=0.13  Score=28.04  Aligned_cols=30  Identities=20%  Similarity=0.291  Sum_probs=23.8

Q ss_pred             CCCEEe---EcCccccCchHHHHHHHhhCCCCC
Q 037179          216 GKRWLC---VCGSDFKHKRSLKDHIKAFGSGHG  245 (266)
Q Consensus       216 ~k~~~C---~C~k~F~~~~~L~~H~~~~H~~~~  245 (266)
                      -+||+|   .|...|.-..+|..|.+.+|...-
T Consensus        18 yrpyrcvhqgc~aaftiq~nlilhy~avh~s~l   50 (61)
T d1x3ca1          18 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDL   50 (61)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCC
T ss_pred             CCceeeeccchhhhhhhhhhHHHHHHHHhhhcC
Confidence            367888   499999999999999888876543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.72  E-value=0.12  Score=25.29  Aligned_cols=27  Identities=19%  Similarity=0.421  Sum_probs=23.4

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGS  242 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~  242 (266)
                      +..|+| +|.+.+..-+++-+|.-+-|.
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            457999 999999999999999887553

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.56  E-value=0.19  Score=23.30  Aligned_cols=26  Identities=31%  Similarity=0.689  Sum_probs=18.9

Q ss_pred             CCEEe---EcCccccCchHHHHHHHhhCC
Q 037179          217 KRWLC---VCGSDFKHKRSLKDHIKAFGS  242 (266)
Q Consensus       217 k~~~C---~C~k~F~~~~~L~~H~~~~H~  242 (266)
                      |.|.|   .|+-.|..+.++++|....|.
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhcc
Confidence            35677   588888888888888766553

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.97  E-value=0.11  Score=30.10  Aligned_cols=39  Identities=8%  Similarity=0.046  Sum_probs=25.8

Q ss_pred             CCCCCCCCCcccccccccCCCchhhhhhcCCCceeccccccc
Q 037179           76 SSNNPSAKGNANVAAAKQYWIPTPEQILIGFTHFSCHVCFKT  117 (266)
Q Consensus        76 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k~~~C~~C~k~  117 (266)
                      +....|.|+.|++.|....   .-..+-.....|.|..|+..
T Consensus        10 ~~~~~y~Cp~C~~~ys~Ld---a~~L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLE---ANQLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHH---HHHHEETTTTEEBCSSSCCB
T ss_pred             ccCCceECCCCCCCcchhh---HHHhcCcCCCeEEecCCCCE
Confidence            4445699999999998743   22222233456899999865

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=0.24  Score=22.87  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=13.6

Q ss_pred             EcCccccCchHHHHHHHhhC
Q 037179          222 VCGSDFKHKRSLKDHIKAFG  241 (266)
Q Consensus       222 ~C~k~F~~~~~L~~H~~~~H  241 (266)
                      .||+-|+.+..|..|.+-.|
T Consensus         7 gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           7 GCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTCCEESSHHHHHHHHHHGG
T ss_pred             CchhhhccHHHHHhHHHHHH
Confidence            37777777777777766433

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.21  E-value=0.4  Score=25.33  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             CCCCeecccccccccchhhHHHHHHH
Q 037179          189 GLKPFMCRKCGKFLAVKGDWRTHEKN  214 (266)
Q Consensus       189 ~~kp~~C~~C~k~f~~~~~L~~H~~~  214 (266)
                      .+.|-.|.+|+...++..+|++|...
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999988763

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.56  E-value=0.19  Score=29.55  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=17.7

Q ss_pred             ceecccccccccChhhHHhhhhh
Q 037179          108 HFSCHVCFKTFNRYNNLQMHMWG  130 (266)
Q Consensus       108 ~~~C~~C~k~F~~~~~L~~H~~~  130 (266)
                      .|-|..|++.|.+...|..|++.
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            36788888888888888888753

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.50  E-value=0.37  Score=25.49  Aligned_cols=27  Identities=19%  Similarity=0.416  Sum_probs=24.2

Q ss_pred             CCCEEe-EcCccccCchHHHHHHHhhCC
Q 037179          216 GKRWLC-VCGSDFKHKRSLKDHIKAFGS  242 (266)
Q Consensus       216 ~k~~~C-~C~k~F~~~~~L~~H~~~~H~  242 (266)
                      +.|-.| +|+....++.+|++|+..-|-
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            788999 999999999999999987653

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.33  E-value=0.18  Score=29.06  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=17.7

Q ss_pred             cCCCceecccccccccChhhHHh
Q 037179          104 IGFTHFSCHVCFKTFNRYNNLQM  126 (266)
Q Consensus       104 ~~~k~~~C~~C~k~F~~~~~L~~  126 (266)
                      +....|.|+.|++.|+.-..+..
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L   32 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL   32 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH
T ss_pred             ccCCceECCCCCCCcchhhHHHh
Confidence            34556999999999988766554