Citrus Sinensis ID: 037212

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-
MCCVFLLSFLCFWLFWAGHSSFIADSPSRTASGNVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKRFAKISQDTKTNGKMREEYHLTARDGDLHSQTMLLNGEILAVNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVLPACAQV
cHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHccccEEEEccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccccccccccccHHHHHHHHHHHHcccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHccccccEEEEEEEccccccccccccccccHHHHHHccHHHHHHHHHHHHHcccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHcccEEEEEccccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEccccccccEEEEHHHHcccccEEEEcccccccccEEEEEEEEcccccccccEEEEccccccccccccccccccEEccccccEEEcccEEEEEEEccccccccccc
ccHHHHHHHHHHHHHHHHccHHHcccccccccccccEEEEEEcccccEEEEcccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHccccEEEEccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEHHHHHcccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEcHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccEEEEEEEEEEccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccccccccccHHHHHHHHHHHccccEEEEEcccccEEEEEEEEccccccEEEEEEEEccccEEEEEEEcccccccccccEEEcccccccccEEEEEccccccccccEEEEEEccccccccccEEEEccEEEEEcccccccccccEEccccccEEEcccEEEEEEEccccccHHccc
MCCVFLLSFLCFWLFwaghssfiadspsrtasgnviegtvFINGTVAIaktddnficatldwwppdkcdygtcswgraSLLNLDLGNPILLKAVKafsplkirmggtlqdkavyeskgidepctpfvknnselfgfsegcltMRRWDELNIFFRRAGAVVTFGLNALRGriiqsdgsargawdssnaeSLMRYTVNKGYKIYGwelgnelsgngvgarigadqyasDVDRLQSIVQNIYkgfkikpliiapggffdanwfkefidktpnslqVVTHHIynlgpgvddrlidkildpsflnsgsepfsSLQSILRSSATSAVAWVGeaggaynsghnlvtNAFVFSFWYLDQlgmasiygTKTYCRQtliggnygllntntfvpnpgyYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKRFAKISQDtktngkmreeyhltardgdlhsqTMLLNGEILavnssedfpplepiyvsetapiivapfsivfaeipssvlpacaqv
MCCVFLLSFLCFWLFWAGHSSFIADSPSRTASGNVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRgriiqsdgsargawdssnaeSLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHcskqsqgttLLLINLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKrfakisqdtktngkmrEEYHLTARDGDLHSQTMLLNGEILAVNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVLPACAQV
MccvfllsflcfwlfWAGHSSFIADSPSRTASGNVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASllnldlgnpillKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGstvlstslsettKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKRFAKISQDTKTNGKMREEYHLTARDGDLHSQTMLLNGEILAVNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVLPACAQV
*CCVFLLSFLCFWLFWAGHSSFIADSPSRTASGNVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFL************ILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVV***************************************QTMLLNGEILAVNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVL******
**CVFLLSFLCFWLFWAGHSSFIADSPSRTASGNVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVVQ********************GKMREEYHLTARDGDLHSQTMLLNGEILAVNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVLPACAQV
MCCVFLLSFLCFWLFWAGHSSFIADSPSRTASGNVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQS*********SSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKRFAKISQDTKTNGKMREEYHLTARDGDLHSQTMLLNGEILAVNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVLPACAQV
MCCVFLLSFLCFWLFWAGHSSFIADSPSRTASGNVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKRFAKISQDTKTNGKMREEYHLTARDGDLHSQTMLLNGEILAVNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVLPACAQ*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCCVFLLSFLCFWLFWAGHSSFIADSPSRTASGNVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKRFAKISQDTKTNGKMREEYHLTARDGDLHSQTMLLNGEILAVNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVLPACAQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query551 2.2.26 [Sep-21-2011]
Q9FZP1536 Heparanase-like protein 3 yes no 0.931 0.957 0.584 0.0
Q8L608539 Heparanase-like protein 2 no no 0.934 0.955 0.494 1e-153
Q9FF10543 Heparanase-like protein 1 no no 0.934 0.948 0.474 1e-145
Q9LRC8527 Baicalin-beta-D-glucuroni N/A no 0.852 0.891 0.452 1e-131
Q9Y251543 Heparanase OS=Homo sapien yes no 0.764 0.775 0.254 1e-24
Q90YK5523 Heparanase OS=Gallus gall yes no 0.651 0.686 0.266 1e-24
Q6YGZ1535 Heparanase OS=Mus musculu yes no 0.615 0.633 0.282 8e-24
Q9MYY0545 Heparanase OS=Bos taurus yes no 0.647 0.655 0.268 7e-23
Q71RP1536 Heparanase OS=Rattus norv yes no 0.611 0.628 0.276 2e-22
Q8WWQ2592 Inactive heparanase-2 OS= no no 0.676 0.630 0.235 1e-14
>sp|Q9FZP1|HPSE3_ARATH Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2 Back     alignment and function desciption
 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/522 (58%), Positives = 389/522 (74%), Gaps = 9/522 (1%)

Query: 30  TASGNVIE-GTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNP 88
           T S  V E GTVF+ G  A+   D++FICATLDWWPP+KCDYG+CSW  AS+LNLDL N 
Sbjct: 22  TVSSAVEENGTVFVYGRAAVGTIDEDFICATLDWWPPEKCDYGSCSWDHASILNLDLNNV 81

Query: 89  ILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDE 148
           IL  A+KAF+PLKIR+GGTLQD  +YE+    +PC PF KN+S LFG+++GCL MRRWDE
Sbjct: 82  ILQNAIKAFAPLKIRIGGTLQDIVIYETPDSKQPCLPFTKNSSILFGYTQGCLPMRRWDE 141

Query: 149 LNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGN 208
           LN FFR+ G  V FGLNAL GR I+S+G A GAW+ +NAES +R+T    Y I GWELGN
Sbjct: 142 LNAFFRKTGTKVIFGLNALSGRSIKSNGEAIGAWNYTNAESFIRFTAENNYTIDGWELGN 201

Query: 209 ELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTP 268
           EL G+GVGAR+GA+QYA D   L++IV  +YK     PL+I PGGFF+ +WF E+++K  
Sbjct: 202 ELCGSGVGARVGANQYAIDTINLRNIVNRVYKNVSPMPLVIGPGGFFEVDWFTEYLNKAE 261

Query: 269 NSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAG 328
           NSL   T HIY+LGPGVD+ LI+KIL+PS+L+  ++ F SL++I+++S+T AVAWVGE+G
Sbjct: 262 NSLNATTRHIYDLGPGVDEHLIEKILNPSYLDQEAKSFRSLKNIIKNSSTKAVAWVGESG 321

Query: 329 GAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYY 388
           GAYNSG NLV+NAFV+SFWYLDQLGMAS+Y TKTYCRQ+LIGGNYGLLNT  F PNP YY
Sbjct: 322 GAYNSGRNLVSNAFVYSFWYLDQLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPNPDYY 381

Query: 389 SALLWHRLMGSTVLSTSLSETTKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISREN 448
           SAL+W +LMG   L T+ S T KIR+Y HC++QS+G T+LL+NLD  TT   +V +    
Sbjct: 382 SALIWRQLMGRKALFTTFSGTKKIRSYTHCARQSKGITVLLMNLDNTTTVVAKVEL---- 437

Query: 449 LAGNGALVVQQEQQNQRKRFAKISQDTKTNGKM-REEYHLTARDGDLHSQTMLLNGEILA 507
              N +  ++  +  +  + A        NG + REEYHLTA+DG+LHSQTMLLNG  L 
Sbjct: 438 ---NNSFSLRHTKHMKSYKRASSQLFGGPNGVIQREEYHLTAKDGNLHSQTMLLNGNALQ 494

Query: 508 VNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVLPACA 549
           VNS  D PP+EPI+++ T PI +AP+SIVF  + + V+PACA
Sbjct: 495 VNSMGDLPPIEPIHINSTEPITIAPYSIVFVHMRNVVVPACA 536
Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme. Cleaves heparan sulfate proteoglycans (HSPGs) into heparan sulfate side chains and core proteoglycans.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: -EC: .EC: -
>sp|Q8L608|HPSE2_ARATH Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF10|HPSE1_ARATH Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRC8|BAGLU_SCUBA Baicalin-beta-D-glucuronidase OS=Scutellaria baicalensis GN=SGUS PE=1 SV=1 Back     alignment and function description
>sp|Q9Y251|HPSE_HUMAN Heparanase OS=Homo sapiens GN=HPSE PE=1 SV=2 Back     alignment and function description
>sp|Q90YK5|HPSE_CHICK Heparanase OS=Gallus gallus GN=HPSE PE=1 SV=1 Back     alignment and function description
>sp|Q6YGZ1|HPSE_MOUSE Heparanase OS=Mus musculus GN=Hpse PE=1 SV=3 Back     alignment and function description
>sp|Q9MYY0|HPSE_BOVIN Heparanase OS=Bos taurus GN=HPSE PE=2 SV=2 Back     alignment and function description
>sp|Q71RP1|HPSE_RAT Heparanase OS=Rattus norvegicus GN=Hpse PE=2 SV=1 Back     alignment and function description
>sp|Q8WWQ2|HPSE2_HUMAN Inactive heparanase-2 OS=Homo sapiens GN=HPSE2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
225430452548 PREDICTED: heparanase-like protein 3-lik 0.989 0.994 0.709 0.0
224143198504 predicted protein [Populus trichocarpa] 0.914 1.0 0.731 0.0
359476171612 PREDICTED: heparanase-like protein 3 [Vi 0.945 0.851 0.714 0.0
255548844527 heparanase, putative [Ricinus communis] 0.927 0.969 0.731 0.0
296084540533 unnamed protein product [Vitis vinifera] 0.961 0.994 0.667 0.0
225446203559 PREDICTED: heparanase-like protein 3-lik 0.980 0.966 0.647 0.0
147862366636 hypothetical protein VITISV_038549 [Viti 0.980 0.849 0.645 0.0
224142519506 predicted protein [Populus trichocarpa] 0.914 0.996 0.661 0.0
255586003551 heparanase, putative [Ricinus communis] 0.976 0.976 0.630 0.0
224120298547 predicted protein [Populus trichocarpa] 0.945 0.952 0.629 0.0
>gi|225430452|ref|XP_002283260.1| PREDICTED: heparanase-like protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/548 (70%), Positives = 438/548 (79%), Gaps = 3/548 (0%)

Query: 1   MCCVFLLSFLCFWLFWAGHSSFIADSPSRTASGNVIEGTVFINGTVAIAKTDDNFICATL 60
           M CV     LC W+     SS    S     SGNV EG+VFING VAI  TDD+FICATL
Sbjct: 1   MGCVLTFVGLCLWVCLMSQSSIPVASQRSGGSGNVEEGSVFINGRVAIGSTDDDFICATL 60

Query: 61  DWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGID 120
           DWWPPDKCDYGTCSWGRASLLNLDL N ILL A+KAFSPLK+RMGGTLQDK +Y+     
Sbjct: 61  DWWPPDKCDYGTCSWGRASLLNLDLSNKILLNAIKAFSPLKVRMGGTLQDKVIYQRTSDQ 120

Query: 121 EPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARG 180
            PC  FVKN+SE+FGFSEGCL M RWDELN+FFR AGAVV FGLNAL GR I  DG A G
Sbjct: 121 NPCAQFVKNSSEMFGFSEGCLPMSRWDELNLFFREAGAVVIFGLNALSGRTIGLDGLAAG 180

Query: 181 AWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYK 240
           AW+SS+AESL+RY+ NKGY I+GWELGNEL+GNGVGA + ADQYASD++ LQS+VQ IY 
Sbjct: 181 AWNSSDAESLIRYSANKGYTIHGWELGNELTGNGVGAGVPADQYASDINTLQSMVQKIYA 240

Query: 241 GFKIKPLIIAPGGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLN 300
           GF++KPL++ PGGFFDA+W+ EFIDKT  SLQVVTHHIYNLGPGVDD LIDKILDPS+L+
Sbjct: 241 GFEVKPLVLGPGGFFDASWYTEFIDKTLKSLQVVTHHIYNLGPGVDDHLIDKILDPSYLD 300

Query: 301 SGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGT 360
            GS+PF  LQSIL++SATSA AWVGEAGGAYNSGHNLVTNAF FSFWYLDQLGMAS Y T
Sbjct: 301 GGSKPFQDLQSILQTSATSATAWVGEAGGAYNSGHNLVTNAFAFSFWYLDQLGMASSYDT 360

Query: 361 KTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRLMGSTVLSTSLSETTKIRAYAHCSK 420
           KTYCRQTLIGGNYGLLNT TFVPNP YYSALLWHRLMG  VLSTS   T KIRAYAHCSK
Sbjct: 361 KTYCRQTLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNVLSTSFYGTRKIRAYAHCSK 420

Query: 421 QSQGTTLLLINLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKRFAKISQDTKTNGK 480
           QS G TLLLINLDGNTT  V+V +S EN AGN    +Q   + QR  F+++ + +K +  
Sbjct: 421 QSPGITLLLINLDGNTT--VQVQVSTEN-AGNRTSTLQDTDKTQRSNFSRMRRVSKIDAS 477

Query: 481 MREEYHLTARDGDLHSQTMLLNGEILAVNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEI 540
           +REEYHLTA+DGDLHSQT+LLNG++L +NSS   PPLEPI VS   P+IVAPFSIVF   
Sbjct: 478 VREEYHLTAKDGDLHSQTLLLNGKVLTINSSRIVPPLEPIRVSSMDPVIVAPFSIVFVRF 537

Query: 541 PSSVLPAC 548
           P+   PAC
Sbjct: 538 PNINYPAC 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224143198|ref|XP_002324878.1| predicted protein [Populus trichocarpa] gi|222866312|gb|EEF03443.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359476171|ref|XP_002283254.2| PREDICTED: heparanase-like protein 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548844|ref|XP_002515478.1| heparanase, putative [Ricinus communis] gi|223545422|gb|EEF46927.1| heparanase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296084540|emb|CBI25561.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225446203|ref|XP_002263173.1| PREDICTED: heparanase-like protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147862366|emb|CAN81917.1| hypothetical protein VITISV_038549 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142519|ref|XP_002324603.1| predicted protein [Populus trichocarpa] gi|222866037|gb|EEF03168.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255586003|ref|XP_002533671.1| heparanase, putative [Ricinus communis] gi|223526439|gb|EEF28717.1| heparanase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224120298|ref|XP_002331013.1| predicted protein [Populus trichocarpa] gi|222872943|gb|EEF10074.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
TAIR|locus:2183542536 GUS3 "AT5G34940" [Arabidopsis 0.931 0.957 0.565 1.7e-162
TAIR|locus:2163243539 GUS1 "AT5G61250" [Arabidopsis 0.932 0.953 0.484 3.2e-136
TAIR|locus:2142768543 GUS2 "AT5G07830" [Arabidopsis 0.947 0.961 0.465 1.9e-129
UNIPROTKB|Q9LRC8527 SGUS "Baicalin-beta-D-glucuron 0.720 0.753 0.468 5.9e-118
UNIPROTKB|F1RVE1542 HPSE "Uncharacterized protein" 0.508 0.516 0.307 3.3e-24
ZFIN|ZDB-GENE-041111-200546 hpse "heparanase" [Danio rerio 0.577 0.582 0.290 5.5e-24
MGI|MGI:1343124535 Hpse "heparanase" [Mus musculu 0.508 0.523 0.304 1.4e-23
UNIPROTKB|Q90YK5523 HPSE "Heparanase" [Gallus gall 0.524 0.552 0.287 1.9e-23
UNIPROTKB|E2RST8545 HPSE "Uncharacterized protein" 0.513 0.519 0.297 1.4e-22
UNIPROTKB|Q9Y251543 HPSE "Heparanase" [Homo sapien 0.508 0.515 0.307 1.7e-22
TAIR|locus:2183542 GUS3 "AT5G34940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1582 (562.0 bits), Expect = 1.7e-162, P = 1.7e-162
 Identities = 295/522 (56%), Positives = 374/522 (71%)

Query:    30 TASGNVIE-GTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASXXXXXXXXX 88
             T S  V E GTVF+ G  A+   D++FICATLDWWPP+KCDYG+CSW  AS         
Sbjct:    22 TVSSAVEENGTVFVYGRAAVGTIDEDFICATLDWWPPEKCDYGSCSWDHASILNLDLNNV 81

Query:    89 XXXKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDE 148
                 A+KAF+PLKIR+GGTLQD  +YE+    +PC PF KN+S LFG+++GCL MRRWDE
Sbjct:    82 ILQNAIKAFAPLKIRIGGTLQDIVIYETPDSKQPCLPFTKNSSILFGYTQGCLPMRRWDE 141

Query:   149 LNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGN 208
             LN FFR+ G  V FGLNAL GR I+S+G A GAW+ +NAES +R+T    Y I GWELGN
Sbjct:   142 LNAFFRKTGTKVIFGLNALSGRSIKSNGEAIGAWNYTNAESFIRFTAENNYTIDGWELGN 201

Query:   209 ELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTP 268
             EL G+GVGAR+GA+QYA D   L++IV  +YK     PL+I PGGFF+ +WF E+++K  
Sbjct:   202 ELCGSGVGARVGANQYAIDTINLRNIVNRVYKNVSPMPLVIGPGGFFEVDWFTEYLNKAE 261

Query:   269 NSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAG 328
             NSL   T HIY+LGPGVD+ LI+KIL+PS+L+  ++ F SL++I+++S+T AVAWVGE+G
Sbjct:   262 NSLNATTRHIYDLGPGVDEHLIEKILNPSYLDQEAKSFRSLKNIIKNSSTKAVAWVGESG 321

Query:   329 GAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNTFVPNPGYY 388
             GAYNSG NLV+NAFV+SFWYLDQLGMAS+Y TKTYCRQ+LIGGNYGLLNT  F PNP YY
Sbjct:   322 GAYNSGRNLVSNAFVYSFWYLDQLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPNPDYY 381

Query:   389 SALLWHRLMGXXXXXXXXXXXXKIRAYAHCSKQSQGTTLLLINLDGNTTARVRVTISREN 448
             SAL+W +LMG            KIR+Y HC++QS+G T+LL+NLD  TT   +V ++   
Sbjct:   382 SALIWRQLMGRKALFTTFSGTKKIRSYTHCARQSKGITVLLMNLDNTTTVVAKVELN--- 438

Query:   449 LAGNGALVVQQEQQNQRKRFAKISQDTKTNGKM-REEYHLTARDGDLHSQTMLLNGEILA 507
                N   +   +     KR A        NG + REEYHLTA+DG+LHSQTMLLNG  L 
Sbjct:   439 ---NSFSLRHTKHMKSYKR-ASSQLFGGPNGVIQREEYHLTAKDGNLHSQTMLLNGNALQ 494

Query:   508 VNSSEDFPPLEPIYVSETAPIIVAPFSIVFAEIPSSVLPACA 549
             VNS  D PP+EPI+++ T PI +AP+SIVF  + + V+PACA
Sbjct:   495 VNSMGDLPPIEPIHINSTEPITIAPYSIVFVHMRNVVVPACA 536
GO:0004566 "beta-glucuronidase activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
TAIR|locus:2163243 GUS1 "AT5G61250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142768 GUS2 "AT5G07830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LRC8 SGUS "Baicalin-beta-D-glucuronidase" [Scutellaria baicalensis (taxid:65409)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVE1 HPSE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041111-200 hpse "heparanase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1343124 Hpse "heparanase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q90YK5 HPSE "Heparanase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RST8 HPSE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y251 HPSE "Heparanase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FZP1HPSE3_ARATH3, ., 2, ., -, ., -0.58420.93100.9570yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
pfam03662320 pfam03662, Glyco_hydro_79n, Glycosyl hydrolase fam 0.0
>gnl|CDD|190706 pfam03662, Glyco_hydro_79n, Glycosyl hydrolase family 79, N-terminal domain Back     alignment and domain information 
 Score =  557 bits (1437), Expect = 0.0
 Identities = 210/318 (66%), Positives = 260/318 (81%), Gaps = 1/318 (0%)

Query: 37  EGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKA 96
           E TV ++G  AIA+TD+NF+CATLDWWPP+KCDYG C WG ASLLNLDL NPILL A+KA
Sbjct: 3   EATVVVDGRRAIAETDENFVCATLDWWPPEKCDYGQCPWGLASLLNLDLNNPILLNAIKA 62

Query: 97  FSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRA 156
           F+PLKIR+GG+LQD+ +Y++  +  PCTPF KN S LFGFS+GCL M RWDELN FF++ 
Sbjct: 63  FAPLKIRLGGSLQDQVIYDTGDLKTPCTPFTKNTSGLFGFSQGCLPMDRWDELNAFFQKT 122

Query: 157 GAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGWELGNELSGNGVG 216
           GA++TFGLNALRGR     G+  GAWD +NAES +RYTV+KGYKI  WELGNELSG+GVG
Sbjct: 123 GAIITFGLNALRGRNKLPKGTWGGAWDYTNAESFIRYTVSKGYKIDSWELGNELSGSGVG 182

Query: 217 ARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKT-PNSLQVVT 275
           AR+ A+QYA D+ +L+++V+++Y+  + KPL+IAPGGFFD  WF E +DKT P+ L V+T
Sbjct: 183 ARVSAEQYAKDLIKLKNLVKDVYQNVRPKPLVIAPGGFFDQQWFTELLDKTGPSVLDVLT 242

Query: 276 HHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGH 335
           HHIYNLGPGVD  LI+KILDPS+L+  ++ FS LQ I++S  T AVAWVGEAGGAYNSG 
Sbjct: 243 HHIYNLGPGVDPHLIEKILDPSYLDGEAKTFSDLQQIIQSHGTWAVAWVGEAGGAYNSGG 302

Query: 336 NLVTNAFVFSFWYLDQLG 353
           NLV+N F+ SFWYLDQLG
Sbjct: 303 NLVSNTFINSFWYLDQLG 320

Family of endo-beta-N-glucuronidase, or heparanase. Heparan sulfate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulfate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular micro-environment. Heparanase degrades HS at specific intra-chain sites. The enzyme is synthesised as a latent approximately 65 kDa protein that is processed at the N-terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumour cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity. Length = 320

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 551
PF03662319 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-t 100.0
COG3534501 AbfA Alpha-L-arabinofuranosidase [Carbohydrate tra 100.0
PF01229486 Glyco_hydro_39: Glycosyl hydrolases family 39; Int 99.32
PF11790239 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; 98.68
PF00150281 Cellulase: Cellulase (glycosyl hydrolase family 5) 98.43
PF02055496 Glyco_hydro_30: O-Glycosyl hydrolase family 30; In 98.39
smart00813189 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminu 98.2
PF12891239 Glyco_hydro_44: Glycoside hydrolase family 44; Int 98.09
PF07745332 Glyco_hydro_53: Glycosyl hydrolase family 53; Inte 97.99
COG5520433 O-Glycosyl hydrolase [Cell envelope biogenesis, ou 97.82
PF1287688 Cellulase-like: Sugar-binding cellulase-like; Inte 97.76
PF06964177 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-termin 97.74
smart00633254 Glyco_10 Glycosyl hydrolase family 10. 97.07
PF14587384 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; P 96.56
COG3867403 Arabinogalactan endo-1,4-beta-galactosidase [Carbo 96.35
PRK10150604 beta-D-glucuronidase; Provisional 96.12
COG3664428 XynB Beta-xylosidase [Carbohydrate transport and m 95.89
PF02836298 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM 95.48
PF00332310 Glyco_hydro_17: Glycosyl hydrolases family 17; Int 90.73
COG5309305 Exo-beta-1,3-glucanase [Carbohydrate transport and 84.59
PF00331320 Glyco_hydro_10: Glycosyl hydrolase family 10; Inte 82.95
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3 Back     alignment and domain information 
Probab=100.00  E-value=2.4e-83  Score=649.33  Aligned_cols=317  Identities=55%  Similarity=1.055  Sum_probs=156.6

Q ss_pred             eEEEEEcCCCcccccCCceeEeeecccCCCCCCCCCccCCccccCCCCCCCHHHHHHHHHcCCCeEecCCccceeeEeec
Q 037212           37 EGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYES  116 (551)
Q Consensus        37 ~~~v~i~~~~~~~~i~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~~~l~~~~L~~l~k~L~p~~LRiGG~~~D~~~y~~  116 (551)
                      .++|.|+...+++++|++|+|+|+||||++||+|++|+||++||+|+||+|++|++++|+|+|.+||+||+.||+++|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~   81 (319)
T PF03662_consen    2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT   81 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccCCCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHHh
Q 037212          117 KGIDEPCTPFVKNNSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVN  196 (551)
Q Consensus       117 ~~~~~~~~p~~~~~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~~  196 (551)
                      +...++|.|+.++++.+|||+++|+|+++||++++|++++|+++|||||++.|+....++.+.++||++||+++++|+.+
T Consensus        82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~s  161 (319)
T PF03662_consen   82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTAS  161 (319)
T ss_dssp             ------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEES
T ss_pred             cccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHH
Confidence            98888999998888999999999999999999999999999999999999998754444456689999999999999999


Q ss_pred             cCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCCCChhhHHHHHhhCCCC-cCeEE
Q 037212          197 KGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFKEFIDKTPNS-LQVVT  275 (551)
Q Consensus       197 ~g~~i~~wElGNEp~~~~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~~~~w~~~fL~~~g~~-id~vs  275 (551)
                      +||+|++|||||||++++++.+++++|||+|+++||++|+++|++..++|+++||+++++.+|+++||++.++. ||+||
T Consensus       162 kgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~vT  241 (319)
T PF03662_consen  162 KGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDAVT  241 (319)
T ss_dssp             S-GGG--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SEEE
T ss_pred             cCCCccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCEEE
Confidence            99999999999999998889999999999999999999999998877899999999988999999999999985 99999


Q ss_pred             EEEeCCCCCCChhhhhhccCcchhcccchhHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcchHHHHHHHHHHHHH
Q 037212          276 HHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLG  353 (551)
Q Consensus       276 ~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~~p~wlgEtnsa~~~G~~~vSdtf~aalw~lD~Lg  353 (551)
                      ||+|++++|+|+++++++++|++||++..+++.+++++++++|++++|||||++||+||+++|||||+++|||||+||
T Consensus       242 ~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLDqLG  319 (319)
T PF03662_consen  242 WHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLDQLG  319 (319)
T ss_dssp             EEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHHHHHH-
T ss_pred             EEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHHHHhhC
Confidence            999999888888889999999999999999999999999999999999999999999999999999999999999997

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins Back     alignment and domain information
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus Back     alignment and domain information
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases Back     alignment and domain information
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3 Back     alignment and domain information
>smart00633 Glyco_10 Glycosyl hydrolase family 10 Back     alignment and domain information
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B Back     alignment and domain information
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
3vny_A488 Crystal Structure Of Beta-Glucuronidase From Acidob 6e-04
>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum Length = 488 Back     alignment and structure 
Iteration: 1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 31/264 (11%)
Query: 140 CLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGY 199
            +T    + L+ F  + G  + +GLN  +G    +   A    ++  A+ L+ +      
Sbjct: 115 VITPEAVNNLSEFLDKTGWKLIYGLNLGKGTPENAADEAAYVMETIGADRLLAF------ 168
Query: 200 KIYGWELGNE---LSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFD 256
                +LGNE      NG+  R  +  +A+     Q     I K     P    P   ++
Sbjct: 169 -----QLGNEPDLFYRNGI--RPASYDFAAYAGDWQRFFTAIRKRVPNAPFA-GPDTAYN 220
Query: 257 ANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRL-IDKILDPSFLNSGSEPFSSLQSILRS 315
             W   F DK  + ++ ++ H Y  GP  D  + I++++ P+    G    + L+ +   
Sbjct: 221 TKWLVPFADKFKHDVKFISSHYYAEGPPTDPSMTIERLMKPNPRLLGET--AGLKQV--E 276
Query: 316 SATSAVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGL 375
           + T     + E    Y  G   V++ F  + W  D +   +  G+         GG YG 
Sbjct: 277 ADTGLPFRLTETNSCYQGGKQGVSDTFAAALWAGDLMYQQAAAGSTGI---NFHGGGYGW 333
Query: 376 LN------TNTFVPNPGYYSALLW 393
                    + F+  P YY  LL+
Sbjct: 334 YTPVAGTPEDGFIARPEYYGMLLF 357

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
3vny_A488 Beta-glucuronidase; TIM barrel, greek-KEY, glycosi 2e-65
3ug3_A504 Alpha-L-arabinofuranosidase; TIM barrel, hydrolase 8e-25
1qw9_A502 Arabinosidase, alpha-L-arabinofuranosidase; hydrol 2e-12
2vrq_A496 Alpha-L-arabinofuranosidase; hydrolase, glycosidas 4e-10
2c7f_A513 Alpha-L-arabinofuranosidase; glycosidase, xylan, a 8e-10
2y2w_A574 Arabinofuranosidase; hydrolase, arabinoxylan, glyc 9e-07
1uhv_A500 Beta-xylosidase; family 39 glycoside hydrolase, xy 2e-06
1w91_A503 Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 8e-06
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 3e-04
>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A* Length = 488 Back     alignment and structure
 Score =  219 bits (559), Expect = 2e-65
 Identities = 75/534 (14%), Positives = 152/534 (28%), Gaps = 84/534 (15%)

Query: 27  PSRTASGNVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLG 86
            +   + + +   + ++ +        ++    L +      +    S     L      
Sbjct: 11  TASQTTSSPVRVGLSVDASALGHTIPPDY--TGLSYEQAQMANPNYFSGANTQLAGF--- 65

Query: 87  NPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPC--TPFVKNNSELFGFSEGCLTMR 144
                          +R+GG   +   +                 +      +   +T  
Sbjct: 66  ------LRTLGRQGVLRIGGNTSEYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPE 119

Query: 145 RWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTVNKGYKIYGW 204
             + L+ F  + G  + +GLN  +G             ++++  + +  T+    ++  +
Sbjct: 120 AVNNLSEFLDKTGWKLIYGLNLGKGTP----------ENAADEAAYVMETI-GADRLLAF 168

Query: 205 ELGNE---LSGNGV-GARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWF 260
           +LGNE      NG+  A      YA D  R  + ++              P   ++  W 
Sbjct: 169 QLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFTAIRKRVP----NAPFAGPDTAYNTKWL 224

Query: 261 KEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQSILR-SSATS 319
             F DK  + ++ ++ H Y  GP  D  +         +            + +  + T 
Sbjct: 225 VPFADKFKHDVKFISSHYYAEGPPTDPSMT----IERLMKPNPRLLGETAGLKQVEADTG 280

Query: 320 AVAWVGEAGGAYNSGHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLN-- 377
               + E    Y  G   V++ F  + W  D +   +  G+         GG YG     
Sbjct: 281 LPFRLTETNSCYQGGKQGVSDTFAAALWAGDLMYQQAAAGS---TGINFHGGGYGWYTPV 337

Query: 378 ----TNTFVPNPGYYSALLWHRLMGSTVLSTSL---SETTKIRAYAHCSKQSQGTTLLLI 430
                + F+  P YY  LL+ +     +L   L   S    + AYA        T + L 
Sbjct: 338 AGTPEDGFIARPEYYGMLLFAQAGAGQLLGAKLTDNSAAPLLTAYALRGT-DGRTRIALF 396

Query: 431 NLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKRFAKISQDTKTNGKMREEYHLTAR 490
           N + +    V ++     +A     V                              L A 
Sbjct: 397 NKNLDADVEVAIS----GVASPSGTV----------------------------LRLEAP 424

Query: 491 DGDLHSQTMLLNGEILAVNSSEDFPPLEPIYVSE-TAPIIVAPFSIVFAEIPSS 543
             D  +      G  +  + S      E +        + +   S    E    
Sbjct: 425 RADDTTDVT-FGGAPVGASGSWSPLVQEYVPGHSGQFVLHMRKASGALLEFAKL 477
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Length = 504 Back     alignment and structure
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Length = 502 Back     alignment and structure
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Length = 496 Back     alignment and structure
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Length = 513 Back     alignment and structure
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Length = 574 Back     alignment and structure
>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A Length = 500 Back     alignment and structure
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Length = 503 Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Length = 591 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
3vny_A488 Beta-glucuronidase; TIM barrel, greek-KEY, glycosi 100.0
1qw9_A502 Arabinosidase, alpha-L-arabinofuranosidase; hydrol 100.0
2c7f_A513 Alpha-L-arabinofuranosidase; glycosidase, xylan, a 100.0
2vrq_A496 Alpha-L-arabinofuranosidase; hydrolase, glycosidas 100.0
3ug3_A504 Alpha-L-arabinofuranosidase; TIM barrel, hydrolase 100.0
2y2w_A574 Arabinofuranosidase; hydrolase, arabinoxylan, glyc 100.0
2yih_A524 CEL44C, xyloglucanase; hydrolase, GH44, endo-gluca 100.0
2e4t_A519 Endoglucanase, xyloglucanase; TIM barrel, TIM-like 100.0
3ii1_A535 Cellulase; CELM2, glucanase-xyanase, glucanase, xy 99.96
3ik2_A517 Endoglucanase A; TIM-like barrel, hydrolase; 2.20A 99.95
1w91_A503 Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 99.92
4ekj_A500 Beta-xylosidase; TIM-barrel fold, hemicellulase, h 99.9
1uhv_A500 Beta-xylosidase; family 39 glycoside hydrolase, xy 99.85
3clw_A507 Conserved exported protein; structural genomics, u 99.32
2y24_A383 Xylanase; hydrolase, GH5 family, aldotetraouronic 99.24
2wnw_A447 Activated by transcription factor SSRB; hydrolase, 99.06
2nt0_A497 Glucosylceramidase; cerezyme, glucocerebrosidase, 99.02
3kl0_A401 Glucuronoxylanase XYNC; alpha beta barrel, (beta/a 98.91
1ur4_A399 Galactanase; hydrolase, beta-1, glycoside hydrolas 98.79
1fob_A334 Beta-1,4-galactanase; B/A barrel, glycosyl hydrola 98.74
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 98.63
3aof_A317 Endoglucanase; glycosyl hydrolase family 5, cellul 98.45
1hjs_A332 Beta-1,4-galactanase; 4-galactanases, family 53 gl 98.41
3nco_A320 Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 98.4
3pzg_A383 Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 98.29
3pzt_A327 Endoglucanase; alpha/beta barrel, glycosyl hydrola 98.21
3jug_A345 Beta-mannanase; TIM-barrel, glycosidase, hydrolase 98.18
1qnr_A344 Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt 98.15
1ceo_A343 Cellulase CELC; glycosyl hydrolase, family A/5 of 98.1
1rh9_A373 Endo-beta-mannanase; endo-beta-mannase, retaining, 98.1
3ndz_A345 Endoglucanase D; cellotriose, xylanase, carbohydra 98.1
3qho_A458 Endoglucanase, 458AA long hypothetical endo-1,4-be 98.04
3icg_A515 Endoglucanase D; cellulase, xylanase, carbohydrate 98.04
1egz_A291 Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL 98.04
1tvn_A293 Cellulase, endoglucanase G; glycoside hydrolase, C 98.03
2whl_A294 Beta-mannanase, baman5; glycoside hydrolase, hydro 98.01
3zr5_A 656 Galactocerebrosidase; hydrolase, GALC, glycosyl hy 98.01
2jep_A395 Xyloglucanase; family 5, plant cell WALL, hydrolas 98.01
1ece_A358 Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. 98.0
3hn3_A613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 97.97
4hty_A359 Cellulase; (alpha/beta)8 barrel, family 5 endogluc 97.96
1uuq_A440 Mannosyl-oligosaccharide glucosidase; hydrolase, m 97.95
7a3h_A303 Endoglucanase; hydrolase, cellulose degradation, g 97.94
1bqc_A302 Protein (beta-mannanase); glycosyl hydrolase, fami 97.93
1wky_A464 Endo-beta-1,4-mannanase; TIM barrel, catalytic dom 97.88
4awe_A387 Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana 97.83
2cks_A306 Endoglucanase E-5; carbohydrate metabolism, polysa 97.79
3ayr_A376 Endoglucanase; TIM barrel, hydrolase, carbohydrate 97.79
1vjz_A341 Endoglucanase; TM1752, structural genomics, JCSG, 97.75
3civ_A343 Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. 97.7
1edg_A380 Endoglucanase A; family A, cellulases, xylanases, 97.69
1g01_A364 Endoglucanase; alpha/beta barrel, TIM barrel, hydr 97.63
1nq6_A302 XYS1; glycoside hydrolase family 10, xylanase, xyl 97.6
1h1n_A305 Endo type cellulase ENGI; hydrolase, glycosyl hydr 97.58
2c0h_A353 Mannan endo-1,4-beta-mannosidase; hydrolase, signa 97.57
3qr3_A340 Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A 97.54
3vup_A351 Beta-1,4-mannanase; TIM barrel, digestive fluid, H 97.5
3l55_A353 B-1,4-endoglucanase/cellulase; putative beta-1,4-e 97.49
2osx_A481 Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel 97.46
2w61_A555 GAS2P, glycolipid-anchored surface protein 2; glyc 97.33
3n9k_A399 Glucan 1,3-beta-glucosidase; aromatic entranceway/ 97.33
3cui_A315 EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine 97.24
1h4p_A408 Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca 97.18
1n82_A331 Xylanase, intra-cellular xylanase; hydrolase; 1.45 97.16
3fn9_A692 Putative beta-galactosidase; structural genomics, 97.16
2dep_A356 Xylanase B, thermostable celloxylanase; glycosidas 97.01
1ur1_A378 Endoxylanase; hydrolase, family 10, glycoside hydr 96.98
3lpf_A605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 96.94
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 96.89
1xyz_A347 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrola 96.81
1i1w_A303 Endo-1,4-beta-xylanase; xylan degradation, hydrola 96.76
3cmg_A667 Putative beta-galactosidase; structural genomics, 96.63
1ta3_B303 Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), 96.61
1v0l_A313 Endo-1,4-beta-xylanase A; glycoside hydrolase fami 96.4
2uwf_A356 Endoxylanase, alkaline active endoxylanase; hydrol 96.37
1w32_A348 Endo-1,4-beta-xylanase A precursor; mutant, calciu 96.22
3ur8_A323 Glucan endo-1,3-beta-D-glucosidase; glucoside hydr 96.22
3u7b_A327 Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET 95.9
3niy_A341 Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.5 95.87
3em5_A316 Beta-1,3-glucanase; glycoprotein, rossmann fold, ( 95.82
3emz_A331 Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 ba 95.72
1r85_A379 Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A 95.7
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 95.61
1kwg_A 645 Beta-galactosidase; TIM barrel, glycoside hydrolas 95.4
1us2_A530 Xylanase10C, endo-beta-1,4-xylanase; hydrolase, ca 95.24
4f8x_A335 Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET 94.71
1aq0_A306 1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl 93.95
2d1z_A436 Endo-1,4-beta-D-xylanase; TIM-barrel, retaining en 93.63
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 93.47
1ghs_A306 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg 92.34
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 91.68
2v3g_A283 Endoglucanase H; beta-1 4 beta-1 3 glucanase, lich 91.17
2cyg_A312 Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be 91.16
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 88.03
4h41_A340 Putative alpha-L-fucosidase; hydrolase, carbohydra 86.37
3tty_A 675 Beta-GAL, beta-galactosidase; TIM barrel, glycosid 86.14
2ddx_A333 Beta-1,3-xylanase; glycoside hydrolase, TIM barrel 85.19
1tg7_A 971 Beta-galactosidase; TIM barrel domain, glycoside h 84.38
2je8_A848 Beta-mannosidase; glycoside hydrolase, hydrolase; 84.3
3tp4_A475 Computational design of enzyme; structural genomic 83.98
2vx5_A396 Cellvibrio japonicus mannanase cjman26C; hydrolase 82.74
1odz_A386 Mannanase A; hydrolase, family 26, glycoside-hydro 81.72
>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A* Back     alignment and structure
Probab=100.00  E-value=5.9e-70  Score=592.02  Aligned_cols=441  Identities=17%  Similarity=0.238  Sum_probs=359.0

Q ss_pred             CceeEEEEEcCCCcccccCCceeEeeecccCCCCCCCCCccCCccccCC---CCCCCHHHHHHHHHcCC-CeEecCCccc
Q 037212           34 NVIEGTVFINGTVAIAKTDDNFICATLDWWPPDKCDYGTCSWGRASLLN---LDLGNPILLKAVKAFSP-LKIRMGGTLQ  109 (551)
Q Consensus        34 ~~~~~~v~i~~~~~~~~i~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~---~~l~~~~L~~l~k~L~p-~~LRiGG~~~  109 (551)
                      .+.+++|+|++++++++||++|+|++||.               +.+.+   +++++++|++++|+|+| ++||+|||++
T Consensus        18 ~~~~~~v~v~~~~~~~~v~~~f~g~~~e~---------------s~i~~~~~~~~~~~~v~~l~k~L~~~~~lR~GG~~~   82 (488)
T 3vny_A           18 SPVRVGLSVDASALGHTIPPDYTGLSYEQ---------------AQMANPNYFSGANTQLAGFLRTLGRQGVLRIGGNTS   82 (488)
T ss_dssp             CCEEEEEEEEEEEEEEEECTTCCEEEEEG---------------GGGGCTTTSSTTCHHHHHHHHHHCSSCEEEEESGGG
T ss_pred             CCCcEEEEEcCCCCCCccCccceEeeeeH---------------hhccCccccCcCCHHHHHHHHHhCCCeEEEeCcccc
Confidence            36789999999999999999999999992               33333   46788999999999999 9999999999


Q ss_pred             eeeEeecCCCCCCCCCcc-cCCCCcC-CccccccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHH
Q 037212          110 DKAVYESKGIDEPCTPFV-KNNSELF-GFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNA  187 (551)
Q Consensus       110 D~~~y~~~~~~~~~~p~~-~~~~~~f-G~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A  187 (551)
                      |.++|+++.++...+|.. .+....+ ..+++|+++.+||+|++||+++|+++||+||++.+             ++++|
T Consensus        83 d~~~w~~g~~p~~~rp~~~~~~~~~~~~~~~~~~~~~~~def~~f~~~~G~~~~~~lN~g~~-------------~~~~a  149 (488)
T 3vny_A           83 EYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPEAVNNLSEFLDKTGWKLIYGLNLGKG-------------TPENA  149 (488)
T ss_dssp             GSEEECTTCCGGGSCTTCCCCCCCSSSCCCCEEECHHHHHHHHHHHHHHCCEEEEEECTTTS-------------CHHHH
T ss_pred             ceEEEcCCCCCcccCcccccCcchhhccccCceeCHHHHHHHHHHHHHhCCEEEEEEeCCCC-------------CHHHH
Confidence            999999987665444421 1111100 01257999999999999999999999999999654             78999


Q ss_pred             HHHHHHHHh--cCCcceeeeeeccCCCC---C-CCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCCCChhhHH
Q 037212          188 ESLMRYTVN--KGYKIYGWELGNELSGN---G-VGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFFDANWFK  261 (551)
Q Consensus       188 ~~~l~y~~~--~g~~i~~wElGNEp~~~---~-~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~~~~w~~  261 (551)
                      ++|++||..  ++++|++||||||||++   | .+.+|++++|+++|++++++|++++|+    .+++||+...+..|++
T Consensus       150 ~~~v~y~~~~~~~~~l~~welGNEpd~~~~~G~~~~~~t~~~Y~~~~~~~a~a~k~~~p~----~~l~gp~~~~~~~w~~  225 (488)
T 3vny_A          150 ADEAAYVMETIGADRLLAFQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFTAIRKRVPN----APFAGPDTAYNTKWLV  225 (488)
T ss_dssp             HHHHHHHHHHHCTTTEEEEEESSCGGGHHHHSSSCTTCCHHHHHHHHHHHHHHHHHHCTT----CCEEEEEESSCGGGHH
T ss_pred             HHHHHHHhhcccCCceeEEEecCcccccccCCccCCCCCHHHHHHHHHHHHHHHHhhCCC----CeEEeCCCCCCchhhH
Confidence            999999985  99999999999999963   3 367899999999999999999999886    4789999766789999


Q ss_pred             HHHhhCCCCcCeEEEEEeCCCCCCCh-hhhhhccCcch-hcccchhHHHHHHHHHHhCCCCcEEEcccccccCCCCCCcc
Q 037212          262 EFIDKTPNSLQVVTHHIYNLGPGVDD-RLIDKILDPSF-LNSGSEPFSSLQSILRSSATSAVAWVGEAGGAYNSGHNLVT  339 (551)
Q Consensus       262 ~fL~~~g~~id~vs~H~Y~~~~g~~~-~~~~~~l~~~~-l~~~~~~~~~l~~~~~~~~~~~p~wlgEtnsa~~~G~~~vS  339 (551)
                      .||+..+..||++|+|+|+.+++.++ .+++++|+++. +++   .++.+++++++  +++|+||||+|+++|+|.+++|
T Consensus       226 ~~l~~~~~~vd~vS~H~Y~~g~~~~~~~t~~~ll~~~~~l~~---~~~~~~~~~~~--~g~p~~lgEtnsa~~~G~~~vs  300 (488)
T 3vny_A          226 PFADKFKHDVKFISSHYYAEGPPTDPSMTIERLMKPNPRLLG---ETAGLKQVEAD--TGLPFRLTETNSCYQGGKQGVS  300 (488)
T ss_dssp             HHHHHTGGGCSEEEEEEEEECCTTCTTCCHHHHTSCCHHHHH---HHHHHHHHHHH--HCCCEEEEEEEEESTTCCTTTT
T ss_pred             HHHHhcCccCCEEEEeeCCCCCCCCCCcCHHHHcCchHHHHH---HHHHHHHHHhc--CCCCEEEeccccCCCCCCCCcC
Confidence            99998888899999999998755443 35788998873 433   23444444443  4789999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhcCCeeEEeecccCccccCcCCCC---CCcCCchHHHHHHHHhcCCceEEeecC-CCceeEEE
Q 037212          340 NAFVFSFWYLDQLGMASIYGTKTYCRQTLIGGNYGLLNTNT---FVPNPGYYSALLWHRLMGSTVLSTSLS-ETTKIRAY  415 (551)
Q Consensus       340 dtf~aalw~lD~Lg~~A~~g~~vv~~q~liGg~Y~ll~~~~---~~p~P~Yy~~lL~~~l~G~~vl~~~~~-~~~~v~~Y  415 (551)
                      |+|++|||++|+++++|+.|++++++|+++|++|++++.++   +.|+|+||+++||+++||.+++.++.. ..+..++|
T Consensus       301 ~tf~aalw~~D~~~~~a~~g~~~v~~h~g~g~~y~~l~~~~~~g~~~~P~Yy~~~l~~~~~G~~vl~~~~~~~~~~~~~~  380 (488)
T 3vny_A          301 DTFAAALWAGDLMYQQAAAGSTGINFHGGGYGWYTPVAGTPEDGFIARPEYYGMLLFAQAGAGQLLGAKLTDNSAAPLLT  380 (488)
T ss_dssp             TSTHHHHHHHHHHHHHHHHTCCCEEEECCTTCTTCSEEEETTTEEEECHHHHHHHHHHHHCSEEEEEEEEESCTTSTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcEEEEEcccCCCcceeecCCCcccccCCcHHHHHHHHHHcCCceEeEeeccCCCCccEE
Confidence            99999999999999999999998888888899999988763   789999999999999999999988763 34556666


Q ss_pred             EEEeeC-CCcEEEEEEeCCCCceEEEEEeeccccccCCcchhhHHHHhhhhhhhhcccccccCCCceeEEEEEecCCCCc
Q 037212          416 AHCSKQ-SQGTTLLLINLDGNTTARVRVTISRENLAGNGALVVQQEQQNQRKRFAKISQDTKTNGKMREEYHLTARDGDL  494 (551)
Q Consensus       416 A~c~~~-~g~vtlllIN~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~Lt~~~~~l  494 (551)
                      |||..+ ++.++|++||++.++.++|+|++.                                ..+.+..+.|++++.+-
T Consensus       381 ayA~~~~~~~~~vlliN~~~~~~~~v~l~G~--------------------------------~~~~~~v~rLta~~~~a  428 (488)
T 3vny_A          381 AYALRGTDGRTRIALFNKNLDADVEVAISGV--------------------------------ASPSGTVLRLEAPRADD  428 (488)
T ss_dssp             EEEEEETTSCEEEEEEECCSSCCEEEEEESC--------------------------------CCSEEEEEEEECSSTTC
T ss_pred             EEEEEcCCCcEEEEEEECCCCccEEEEecCC--------------------------------CCceEEEEEEECCCccc
Confidence            666653 578999999999998777777531                                23467789999985443


Q ss_pred             ccccEEEcCeeeecCCCCCCCCCCceecCCC-CceEEcCceEEEEEecCCC
Q 037212          495 HSQTMLLNGEILAVNSSEDFPPLEPIYVSET-APIIVAPFSIVFAEIPSSV  544 (551)
Q Consensus       495 ~s~~v~LNG~~l~~~~~g~~p~l~p~~~~~~-~~i~lpp~S~~F~vi~~~~  544 (551)
                      . ..|++||++++.+.++.+|.-+.+.+..+ ..++|||.|++.+.|+...
T Consensus       429 ~-~~it~~G~s~~~~~~~~~~~~~~~~v~~g~~~v~v~a~sa~lv~f~~~~  478 (488)
T 3vny_A          429 T-TDVTFGGAPVGASGSWSPLVQEYVPGHSGQFVLHMRKASGALLEFAKLA  478 (488)
T ss_dssp             S-SCCEETTBCCCGGGCCCCSCCEEEECBTTBEEEEECSSEEEEEEECCTT
T ss_pred             c-cCceECCEEecCCCceeecCeEEEEecCCeEEEEEcCCeEEEEEehhhh
Confidence            3 48999999998655666666555555443 4699999999999997653
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Back     alignment and structure
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Back     alignment and structure
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Back     alignment and structure
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Back     alignment and structure
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Back     alignment and structure
>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase, carbohydrate-binding protei; HET: BGC; 1.70A {Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A* Back     alignment and structure
>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl HY families 5, 30, 39 and 51, hydrolase; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A* Back     alignment and structure
>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A Back     alignment and structure
>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum} Back     alignment and structure
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Back     alignment and structure
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides} Back     alignment and structure
>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A Back     alignment and structure
>3clw_A Conserved exported protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>2y24_A Xylanase; hydrolase, GH5 family, aldotetraouronic acid; HET: XYP GCV PG4 PGE; 1.39A {Erwinia chrysanthemi} PDB: 1nof_A* Back     alignment and structure
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp} Back     alignment and structure
>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase, glucosylceramide, hydrolysis, disease, hydrolase; HET: NAG; 1.79A {Homo sapiens} SCOP: b.71.1.2 c.1.8.3 PDB: 1y7v_A* 2f61_A* 2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A* 3gxf_A* 3gxi_A* 3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A* 2v3d_A* 2vt0_A* 2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ... Back     alignment and structure
>3kl0_A Glucuronoxylanase XYNC; alpha beta barrel, (beta/alpha)8 barrel (beta/alpha)8 + beta motif family, hydrolase; HET: TAR HIS; 1.64A {Bacillus subtilis} PDB: 3gtn_A* 3kl3_A* 3kl5_A* Back     alignment and structure
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* Back     alignment and structure
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* Back     alignment and structure
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* Back     alignment and structure
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* Back     alignment and structure
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* Back     alignment and structure
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A Back     alignment and structure
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} Back     alignment and structure
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* Back     alignment and structure
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Back     alignment and structure
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 Back     alignment and structure
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* Back     alignment and structure
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* Back     alignment and structure
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 Back     alignment and structure
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* Back     alignment and structure
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Back     alignment and structure
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A* Back     alignment and structure
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* Back     alignment and structure
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* Back     alignment and structure
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* Back     alignment and structure
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A Back     alignment and structure
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Back     alignment and structure
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 Back     alignment and structure
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila} Back     alignment and structure
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* Back     alignment and structure
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* Back     alignment and structure
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Back     alignment and structure
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 Back     alignment and structure
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* Back     alignment and structure
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3 Back     alignment and structure
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A Back     alignment and structure
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 Back     alignment and structure
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} Back     alignment and structure
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} Back     alignment and structure
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* Back     alignment and structure
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Back     alignment and structure
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A Back     alignment and structure
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A* Back     alignment and structure
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 Back     alignment and structure
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium} Back     alignment and structure
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A* Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3 Back     alignment and structure
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3 Back     alignment and structure
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A Back     alignment and structure
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A* Back     alignment and structure
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A Back     alignment and structure
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A Back     alignment and structure
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum} Back     alignment and structure
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A Back     alignment and structure
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A* Back     alignment and structure
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A* Back     alignment and structure
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate binding module, xylan degradation; HET: XYP; 1.85A {Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB: 1us3_A Back     alignment and structure
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens} Back     alignment and structure
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A Back     alignment and structure
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3 Back     alignment and structure
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
>2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase, hydrolase, glycosidase, glycoside hydrolase family 26; HET: BGC NOY; 1.20A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A* Back     alignment and structure
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* Back     alignment and structure
>2ddx_A Beta-1,3-xylanase; glycoside hydrolase, TIM barrel, hydrola; 0.86A {Vibrio SP} Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>3tp4_A Computational design of enzyme; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.98A {Synthetic construct} PDB: 2x2y_A 2bvy_A 2bvt_A Back     alignment and structure
>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* Back     alignment and structure
>1odz_A Mannanase A; hydrolase, family 26, glycoside-hydrolase, glycosynthase, manno-oligosaccharide; HET: MAN BMA; 1.4A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1r7o_A* 2whm_A* 1j9y_A 1gvy_A* 1gw1_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 551
d1uhva2346 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic do 1e-08
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-D-xylosidase, catalytic domain
species: Thermoanaerobacterium saccharolyticum [TaxId: 28896]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 43/336 (12%), Positives = 91/336 (27%), Gaps = 16/336 (4%)

Query: 75  WGRASLLNLDLGNPILLKAVKAFSPLKIRMGGTLQDKAVYESKGIDEPCTPFVKNNSELF 134
            GR  L         L    +      IR  G L D      + +         N + + 
Sbjct: 11  TGRLGLALQKEYIETLKYVKENIDFKYIRGHGLLCDDVGIYREDVVGDEVKPFYNFTYID 70

Query: 135 GFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYT 194
              +  L +     + I F                    +       W       L  + 
Sbjct: 71  RIFDSFLEIGIRPFVEIGFMPKKLASGTQ-TVFYWEGNVTPPKDYEKWSDLVKAVLHHFI 129

Query: 195 VNKG---YKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAP 251
              G      + +E+ NE +           +Y          ++ + +  K+    I  
Sbjct: 130 SRYGIEEVLKWPFEIWNEPNLKEFWKDADEKEYFKLYKVTAKAIKEVNENLKVGGPAICG 189

Query: 252 GGFFDANWFKEFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILDPSFLNSGSEPFSSLQS 311
           G  +    F  F  +    +  V+ H Y    G     +            +E  +  + 
Sbjct: 190 GADYWIEDFLNFCYEENVPVDFVSRHAYTSKQGEYTPHLIYQEIMPSEYMLNEFKTVREI 249

Query: 312 ILRSSATSAVAWVGEAGGAYNSGHNLVT----NAFVFSFWYLDQLGMASI-------YGT 360
           I  S   +    + E   +Y+  + +       A++          + S           
Sbjct: 250 IKNSHFPNLPFHITEYNTSYSPQNPVHDTPFNAAYIARILSEGGDYVDSFSYWTFSDVFE 309

Query: 361 KTYCRQTLIGGNYGLLNTNTFVPNPGYYSALLWHRL 396
           +    ++   G +GL+  N  +P P +Y+   ++ +
Sbjct: 310 ERDVPRSQFHGGFGLVALN-MIPKPTFYTFKFFNAM 344

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
d1qw9a2367 Alpha-L-arabinofuranosidase, catalytic domain {Bac 100.0
d1uhva2346 Beta-D-xylosidase, catalytic domain {Thermoanaerob 99.78
d1ur4a_387 Beta-1,4-galactanase {Bacillus licheniformis [TaxI 98.9
d1foba_334 Beta-1,4-galactanase {Fungus (Aspergillus aculeatu 98.74
d1xyza_320 Xylanase {Clostridium thermocellum, XynZ [TaxId: 1 98.65
d1vbua1324 Xylanase {Thermotoga maritima [TaxId: 2336]} 98.55
d1hjsa_332 Beta-1,4-galactanase {Thielavia heterothallica, ak 98.51
d1ceoa_340 Endoglucanase CelC {Clostridium thermocellum [TaxI 98.41
d1uuqa_410 Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} 98.38
d1fh9a_312 Xylanase A, catalytic core {Cellulomonas fimi [Tax 98.15
d1nq6a_302 Xylanase A, catalytic core {Streptomyces halstedii 98.14
d1vjza_325 Endoglucanase homologue TM1752 {Thermotoga maritim 98.12
d1rh9a1370 Beta-mannanase {Tomato (Lycopersicon esculentum) [ 98.09
d1nofa2277 Glycosyl hydrolase family 5 xylanase, catalytic do 98.07
d1ecea_358 Endocellulase E1 {Acidothermus cellulolyticus [Tax 98.04
d1egza_291 Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 98.02
d1qnra_344 Beta-mannanase {Trichoderma reesei [TaxId: 51453]} 97.99
d1tvna1293 Endoglucanase Cel5a {Pseudoalteromonas haloplankti 97.95
d1wkya2297 Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 97.93
d1n82a_330 Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId 97.9
d1bqca_302 Beta-mannanase {Thermomonospora fusca [TaxId: 2021 97.86
d7a3ha_300 Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId 97.76
d1v0la_302 Xylanase A, catalytic core {Streptomyces lividans 97.75
d1h1na_305 Endocellulase EngI {Thermoascus aurantiacus [TaxId 97.72
d1edga_380 Endoglucanase CelA {Clostridium cellulolyticum [Ta 97.64
d1bhga3304 beta-Glucuronidase, domain 3 {Human (Homo sapiens) 97.62
d1g01a_357 Alkaline cellulase K catalytic domain {Bacillus sp 97.46
d2nt0a2354 Glucosylceramidase, catalytic domain {Human (Homo 97.37
d1us3a2364 Xylanase 10c {Cellvibrio japonicus [TaxId: 155077] 97.34
d1ta3b_301 Xylanase A, catalytic core {Emericella nidulans (A 97.19
d2c0ha1350 endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed 97.09
d1qw9a1130 Alpha-l-arabinofuranosidase {Bacillus stearothermo 96.97
d2pb1a1394 Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) 96.48
d2c7fa1131 Alpha-l-arabinofuranosidase {Clostridium thermocel 96.42
d1ghsa_306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 96.21
d1i1wa_303 Xylanase A, catalytic core {Thermoascus aurantiacu 96.07
d1r85a_371 Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 95.99
d1tg7a5354 Beta-galactosidase LacA, N-terminal domain {Penici 95.89
d2v3ga1273 Endoglucanase H N-terminal domain {Clostridium the 95.51
d2cyga1312 Plant beta-glucanases {Banana (Musa acuminata), 1, 95.44
d1h4pa_408 Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom 94.64
d1aq0a_306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 93.9
d1ur1a_350 Xylanase {Cellvibrio mixtus [TaxId: 39650]} 93.11
d1nofa1106 Glycosyl hydrolase family 5 xylanase {Erwinia chry 90.43
d1w32a_346 Xylanase A, catalytic core {Pseudomonas fluorescen 89.82
d2je8a5348 Five-domain beta-mannosidase, domain 3 {Bacteroide 89.2
d1jz8a5292 beta-Galactosidase, domain 3 {Escherichia coli [Ta 86.39
d1yq2a5297 beta-Galactosidase, domain 3 {Arthrobacter sp. c2- 85.37
d2bvya2366 Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708] 83.06
d2vzsa5339 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 81.8
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alpha-L-arabinofuranosidase, catalytic domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=6.9e-34  Score=294.30  Aligned_cols=312  Identities=16%  Similarity=0.107  Sum_probs=223.0

Q ss_pred             ccCCceeEeeecccCCCCCCCCCccCCccccCCCCCCCHHHHHHHHHcCCCeEec-CCccceeeEeecCCCCCCCCCccc
Q 037212           50 KTDDNFICATLDWWPPDKCDYGTCSWGRASLLNLDLGNPILLKAVKAFSPLKIRM-GGTLQDKAVYESKGIDEPCTPFVK  128 (551)
Q Consensus        50 ~i~~~f~s~sie~wp~~~~~y~~~~w~~~s~~~~~l~~~~L~~l~k~L~p~~LRi-GG~~~D~~~y~~~~~~~~~~p~~~  128 (551)
                      .|+|+++|.++|+  -.+|+|++..-+.+.++|.+--.+.|++++|.|+|++||+ |||.+|.++|.++.++...+|...
T Consensus         1 ~i~~~i~g~f~E~--lg~~i~~g~~~~~~~~~~~~G~R~dv~~~l~~l~~~~lR~PGG~~~~~y~W~~~iGp~~~Rp~~~   78 (367)
T d1qw9a2           1 EIDKRIYGSFIEH--LGRAVYGGIYEPGHPQADENGFRQDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRL   78 (367)
T ss_dssp             ECCGGGGEEECCS--STTSTBTTTBCTTCTTBCTTSBBHHHHHHHHHHTCCEEEESCSGGGGGCCGGGGSSCGGGCCCEE
T ss_pred             CCChhhccchhhh--ccCcccCceeCCCCCCCCCcccHHHHHHHHHhcCCCEEeeCCccccCccccccccCChHHCCCcc
Confidence            4899999999995  5789999984356777777855678999999999999997 999999999999888765565322


Q ss_pred             C------CCCcCCccccccChHhHHHHHHHHHhcCCEEEEEeecCCCccccCCCCCCCCCChHHHHHHHHHHH-------
Q 037212          129 N------NSELFGFSEGCLTMRRWDELNIFFRRAGAVVTFGLNALRGRIIQSDGSARGAWDSSNAESLMRYTV-------  195 (551)
Q Consensus       129 ~------~~~~fG~~~~~lt~~~wd~~~~f~~~~G~~~ifglN~~~~~~~~~~~~~~~~W~~~~A~~~l~y~~-------  195 (551)
                      +      +++.||+          +||++||+.+|+++++++|++.+             .+++|++||+||+       
T Consensus        79 ~~~w~~~~~~~~G~----------~Ef~~~~~~~gaep~~~vn~g~~-------------~~~~a~d~vey~n~~~~t~~  135 (367)
T d1qw9a2          79 DLAWKSVETNEIGL----------NEFMDWAKMVGAEVNMAVNLGTR-------------GIDAARNLVEYCNHPSGSYY  135 (367)
T ss_dssp             ETTTTEEECCSSCH----------HHHHHHHHHHTCEEEEEECCSSC-------------CHHHHHHHHHHHHCCSSSHH
T ss_pred             CCCCCCcCcCCCCH----------HHHHHHHHHhCCeEEEEEeCCCc-------------cHHHHHHHHHHHccCCCCHH
Confidence            1      3345664          99999999999999999999876             5899999999985       


Q ss_pred             ---------hcCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCcEEEccCCCC-----ChhhHH
Q 037212          196 ---------NKGYKIYGWELGNELSGNGVGARIGADQYASDVDRLQSIVQNIYKGFKIKPLIIAPGGFF-----DANWFK  261 (551)
Q Consensus       196 ---------~~g~~i~~wElGNEp~~~~~~~~~ta~~Ya~d~~~~~~~~~~~~~~~~~~p~~~gP~~~~-----~~~w~~  261 (551)
                               .++|+|++||||||+++.+.....++++|++.+++|+++||+++|++    ++++.+...     ..+|++
T Consensus       136 ~~~R~~~G~~~P~~v~yweIGNE~~g~~~~g~~~~~~Y~~~~~~f~~amk~~dP~i----~lia~g~~~~~~~~~~~w~~  211 (367)
T d1qw9a2         136 SDLRIAHGYKEPHKIKTWCLGNAMDGPWQIGHKTAVEYGRIACEAAKVMKWVDPTI----ELVVCGSSNRNMPTFAEWEA  211 (367)
T ss_dssp             HHHHHHTTCCSCCCCCEEEESSCCCSTTSTTCCCHHHHHHHHHHHHHHHHHHCTTC----EEEECCCSCTTSTTTTHHHH
T ss_pred             HHHHHHcCCCCCCCceEEEeccccccccccCCCCHHHHHHHHHHHHHHHhhcCCCe----eEEEEeCCCCCCcccchHHH
Confidence                     24689999999999998544345899999999999999999999874    777555321     236999


Q ss_pred             HHHhhCCCCcCeEEEEEeCCCCCCChhhhhhccC-cchhcccchhHHHHHHHHH----H--hCCCCcEEEcccccccCC-
Q 037212          262 EFIDKTPNSLQVVTHHIYNLGPGVDDRLIDKILD-PSFLNSGSEPFSSLQSILR----S--SATSAVAWVGEAGGAYNS-  333 (551)
Q Consensus       262 ~fL~~~g~~id~vs~H~Y~~~~g~~~~~~~~~l~-~~~l~~~~~~~~~l~~~~~----~--~~~~~p~wlgEtnsa~~~-  333 (551)
                      .+++..++.+|++|.|+|+.+...+..   ..+. ...++.   .++.+.++++    +  ..++.++.++|+|..+.. 
T Consensus       212 ~vl~~~~~~iD~is~H~Y~~~~~~~~~---~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~i~iavdEwn~wy~~~  285 (367)
T d1qw9a2         212 TVLDHTYDHVDYISLHQYYGNRDNDTA---NYLALSLEMDD---FIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSN  285 (367)
T ss_dssp             HHHHHHGGGCSEEEEEEEECCTTCCHH---HHTTTHHHHHH---HHHHHHHHHHHHHHHHTCSCCCEEEEEEEEECCTTH
T ss_pred             HHHhhccccCCcccccCCCCCCccchh---hhhhhHHHHHH---HHHHHHHHHHHHHhhccCCCCceEEeeccccccccc
Confidence            999999988999999999865332221   1111 111222   2223322222    2  345688999999986531 


Q ss_pred             -------------CCCCcchHHHHHHHHHHHHHHhhhcCCeeEEee--cccCcccc--CcCCC-CCCcCCchHHHHHHHH
Q 037212          334 -------------GHNLVTNAFVFSFWYLDQLGMASIYGTKTYCRQ--TLIGGNYG--LLNTN-TFVPNPGYYSALLWHR  395 (551)
Q Consensus       334 -------------G~~~vSdtf~aalw~lD~Lg~~A~~g~~vv~~q--~liGg~Y~--ll~~~-~~~p~P~Yy~~lL~~~  395 (551)
                                   +.-.-.+++.+||..+-.|-...++.-.|.|-.  .++..- +  +.+.+ ....+|.||++.|+.+
T Consensus       286 ~~~~~~~~~~~~~~~l~~~~tl~~AL~~A~~L~~~~R~sD~V~mA~~A~lvNvl-~~i~~~~~~~~~~~~~y~v~~~~s~  364 (367)
T d1qw9a2         286 EADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIACLAQLVNVI-APIMTEKNGPAWKQTIYYPFMHASV  364 (367)
T ss_dssp             HHHTTCCTTBSSCCTTCCCCBHHHHHHHHHHHHHHHHTTTTEEEEEEECSBSSS-CSEEECTTSCEEECTTHHHHHHHHH
T ss_pred             cccccccccccCcccccccCcHHHHHHHHHHHHHHHHccCeeeeeehhHhhhhh-cceEecCCCCeeeCcchHHHHHHHH
Confidence                         111123466777776677766666653333221  222211 2  12222 3557899999999998


Q ss_pred             hc
Q 037212          396 LM  397 (551)
Q Consensus       396 l~  397 (551)
                      ++
T Consensus       365 ~~  366 (367)
T d1qw9a2         365 YG  366 (367)
T ss_dssp             HC
T ss_pred             hc
Confidence            74
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Back     information, alignment and structure
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ [TaxId: 1515]} Back     information, alignment and structure
>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} Back     information, alignment and structure
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1nq6a_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces halstedii [TaxId: 1944]} Back     information, alignment and structure
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Back     information, alignment and structure
>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase, catalytic domain {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} Back     information, alignment and structure
>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} Back     information, alignment and structure
>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} Back     information, alignment and structure
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]} Back     information, alignment and structure
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} Back     information, alignment and structure
>d1v0la_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces lividans [TaxId: 1916]} Back     information, alignment and structure
>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} Back     information, alignment and structure
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]} Back     information, alignment and structure
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]} Back     information, alignment and structure
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1qw9a1 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d2c7fa1 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranosidase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus aurantiacus [TaxId: 5087]} Back     information, alignment and structure
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]} Back     information, alignment and structure
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d2v3ga1 c.1.8.3 (A:8-280) Endoglucanase H N-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]} Back     information, alignment and structure
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1nofa1 b.71.1.2 (A:31-43,A:321-413) Glycosyl hydrolase family 5 xylanase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3 {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure