Citrus Sinensis ID: 037347

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MATQKNDHDAVPESILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSLDGSVEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNRKRASREWEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLSSL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEEcccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEccccHHcccccccccccccccccccccHHHHHHHHHHHHHHccHccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHccc
Coil and Loop (DISEMBL)
matqkndhdavpesILENVWAnfigssedgriqrsgtsdasefsksssweempsldgSVEILERLPSLGRWISMGAEAWEELLDGiipttkesykcnttgddskicrinsntassaepgpnkmnaMRVEkvatptrhyrgvrrrpwgkyAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALrirgpkahlnfpleevannamatefsgagfndlsMMTISQendnisssrnrkrasrEWEYqnigatnytmidepatpikrtasmesafgheldvleFQDLGSEYLDSLLSSL
Flexible Loop (DISEMBL)
matqkndhdavpeSILENVWANFIGSsedgriqrsgtsdasefsksssweempslDGSVEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCnttgddskicrinsntassaepgpnkmnamrvekvatptrhyrgvrrrpwgkyaaeirdssrkgarVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISqendnisssrnrkrasreweyqnigatnytmidePATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLSSL
Low Complexity Region (SEG)
MATQKNDHDAVPESILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSLDGSVEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTaeeaalaydkaalRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNRKRASREWEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLSSL
Disordered region (IsUnstruct)
**************ILENVWANFI**********************************VEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTT*************************************HYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLEEVANNAMATEFSGA*****************************WEYQNIGATNYTMID***************FGHELDVLEFQDLG***********
Disordered Region (DISOPRED)
*************SILENVWANFIG****************************SLDGSVEILERLPSLGRWISMGAEAWEELLD********************************************************VRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPL********************************************************************************VLEFQDLGSEYLDSLLSSL
Disordered Region (DISEMBL)
**********VPESILENVWANFIGSSED************************SLDGSVEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQE**************REWEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLSSL
Disordered Region (DISPRO)
**********V*ESILENVWANFIGSSE***************S*SSSWEEMPSLDGSVEILERLPSLGRWISMGAEAWEELLDGII***********************************************TRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLEEVA*************************************************************************ELDVLEFQDLGSEYLDSLLSSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATQKNDHDAVPESILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSLDGSVEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNRKRASREWEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
O49515	303	Ethylene-responsive trans	yes	no	0.833	0.811	0.352	2e-34
O04681	161	Pathogenesis-related gene	N/A	no	0.216	0.397	0.812	1e-24
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.257	0.269	0.688	2e-24
Q8VY90	221	Ethylene-responsive trans	no	no	0.210	0.280	0.806	3e-24
Q40476	236	Ethylene-responsive trans	N/A	no	0.203	0.254	0.8	9e-24
O80338	243	Ethylene-responsive trans	no	no	0.274	0.333	0.626	9e-24
Q40478	291	Ethylene-responsive trans	N/A	no	0.230	0.233	0.739	1e-23
Q40479	233	Ethylene-responsive trans	N/A	no	0.203	0.257	0.8	2e-23
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.203	0.253	0.8	2e-23
O80341	300	Ethylene-responsive trans	no	no	0.210	0.206	0.758	7e-23

>sp|O49515|ERF91_ARATH Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=1 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/326 (35%), Positives = 158/326 (48%), Gaps = 80/326 (24%)

Query: 15  ILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSLD----GSVEILERLPSLGR 70
           IL+NVWAN+IG+ +      + T        S +WE +P+LD    GS E+L+ L     
Sbjct: 13  ILKNVWANYIGTPQ------TDTRSIQVPEVSRTWEALPTLDDIPEGSREMLQSLD---- 62

Query: 71  WISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAEPGPNKMNAMRVEK 130
            +S   + W E+LD I      S+   T  D      I+S + SS              +
Sbjct: 63  -MSTEDQEWTEILDAIA-----SFPNKTNHDPLTNPTIDSCSLSS--------------R 102

Query: 131 VATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRG-PK 189
           V+  TR YRGVR+RPWGK+AAEIRDS+R G RVWLGTF TAEEAA+AYDKAA+RIRG  K
Sbjct: 103 VSCKTRKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQK 162

Query: 190 AHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSS-----RNRKRASREWE-- 242
           AH NF LE V   AM  + +   +     M  S  +D + SS     R  K A + ++  
Sbjct: 163 AHTNFQLETVI-KAMEMDCNPNYYR----MNNSNTSDPLRSSRKIGLRTGKEAVKAYDEV 217

Query: 243 ----YQNIGATNYTMIDEPA-----------------------------TPIKRTASMES 269
                +N  A +Y    E +                               +++T + E 
Sbjct: 218 VDGMVENHCALSYCSTKEHSETRGLRGSEETWFDLRKRRRSNEDSMCQEVEMQKTVTGEE 277

Query: 270 AFGHELDVLEFQDLGSEYLDSLLSSL 295
                  + EF+DLGS+YL++LLSS 
Sbjct: 278 TVCDVFGLFEFEDLGSDYLETLLSSF 303

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 57/64 (89%)

Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFP 195
           + YRGVRRRPWGKYAAEIRDS+R GARVWLGTF+TAEEAALAYD+AA R+RG KA LNFP
Sbjct: 57  KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116

Query: 196 LEEV 199
            E V
Sbjct: 117 SEIV 120

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 125 AMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALR 184
             +VE   T  +HYRGVR+RPWGK+AAEIRD +RKG RVWLGTFDTA EAA AYD+AA +
Sbjct: 125 VQKVELAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYK 184

Query: 185 IRGPKAHLNFPLEEVAN 201
           +RG KA +NFPL EVAN
Sbjct: 185 LRGSKAIVNFPL-EVAN 200

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 54/62 (87%)

Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFP 195
           RHYRGVRRRPWGKYAAEIRD ++KG RVWLGTFDTA EAA  YDKAA ++RG KA LNFP
Sbjct: 70  RHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129

Query: 196 LE 197
           LE
Sbjct: 130 LE 131

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 55/60 (91%)

Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFP 195
           RHYRGVRRRPWGK+AAEIRD ++ GARVWLGT++T EEAA+AYDKAA R+RG KAHLNFP
Sbjct: 103 RHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFP 162

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  110 bits (276), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 65/83 (78%), Gaps = 2/83 (2%)

Query: 114 SSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEE 173
           ++ E  P K  A+ V + A   +HYRGVR+RPWGK+AAEIRD ++ GARVWLGTF+TAE+
Sbjct: 95  TAMEEKPKK--AIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAED 152

Query: 174 AALAYDKAALRIRGPKAHLNFPL 196
           AALAYD AA R+RG +A LNFPL
Sbjct: 153 AALAYDIAAFRMRGSRALLNFPL 175

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 59/69 (85%), Gaps = 1/69 (1%)

Query: 133 TPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHL 192
           T  +HYRGVR+RPWGK+AAEIRD +RKG RVWLGTFDTA EAA AYD+AA ++RG KA +
Sbjct: 140 TEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIV 199

Query: 193 NFPLEEVAN 201
           NFPL EVAN
Sbjct: 200 NFPL-EVAN 207

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 55/60 (91%)

Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFP 195
           RHYRGVR+RPWGK+AAEIRD ++ GARVWLGT++TAEEAALAYDKAA R+RG KA LNFP
Sbjct: 97  RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 156

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 55/60 (91%)

Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFP 195
           RHYRGVR+RPWGK+AAEIRD ++ GARVWLGT++TAEEAALAYDKAA R+RG KA LNFP
Sbjct: 101 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  108 bits (269), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 56/62 (90%)

Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFP 195
           +HYRGVR+RPWGK+AAEIRD +++G+RVWLGTFDTA EAA AYD+AA R+RG KA LNFP
Sbjct: 154 KHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213

Query: 196 LE 197
           LE
Sbjct: 214 LE 215

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
224077026	276	AP2/ERF domain-containing transcription	0.888	0.949	0.549	1e-71
224116378	281	AP2/ERF domain-containing transcription	0.911	0.957	0.534	1e-67
225443547	277	PREDICTED: ethylene-responsive transcrip	0.898	0.956	0.534	4e-67
449434312	277	PREDICTED: ethylene-responsive transcrip	0.915	0.974	0.523	2e-66
356546611	265	PREDICTED: ethylene-responsive transcrip	0.864	0.962	0.551	6e-65
356557719	266	PREDICTED: ethylene-responsive transcrip	0.867	0.962	0.530	4e-64
357446831	276	Ethylene responsive transcription factor	0.867	0.927	0.498	2e-59
255563028	246	Ethylene-responsive transcription factor	0.786	0.943	0.504	4e-56
147866351	257	hypothetical protein VITISV_020435 [Viti	0.610	0.700	0.607	1e-54
413948489	281	putative AP2/EREBP transcription factor	0.847	0.889	0.386	2e-36

>gi|224077026|ref|XP_002305098.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222848062|gb|EEE85609.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 168/306 (54%), Positives = 208/306 (67%), Gaps = 44/306 (14%)

Query: 3   TQKNDHDAVPESILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSLDG---SV 59
           T ++DH A  E ILENVWA++IG  + G I   G S+ SE   S SW+++PSLD    S+
Sbjct: 2   TIQSDHRAASEGILENVWASYIGE-DRGDI---GISN-SEQEVSKSWQDLPSLDRRDESM 56

Query: 60  EILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAEPG 119
           E L+RLPSLGRWISMGAE WEELLDGIIP   ++  CN + ++     ++S         
Sbjct: 57  EALQRLPSLGRWISMGAETWEELLDGIIPEINDT--CNDSAENKGPSSLSS--------- 105

Query: 120 PNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYD 179
             K +A++VEKV T  RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTF+TAEEAALAYD
Sbjct: 106 --KASAVKVEKVTT--RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFETAEEAALAYD 161

Query: 180 KAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNIS---------- 229
           KAALRIRGPK +LNFPLE VA  AM  + S    N LS  T + + +N S          
Sbjct: 162 KAALRIRGPKTYLNFPLETVA-KAMCIDCSKNDSNVLS--TTNSQGNNTSCTFPGSSDKV 218

Query: 230 SSRNRKRASREWEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLD 289
           S  +RKRASR+WE +    +  TM+++P   +KRTA +E  + +  DV+EFQDLGS+YLD
Sbjct: 219 SVIHRKRASRDWEVK----SESTMMEQPG--LKRTARVEELYAN--DVVEFQDLGSDYLD 270

Query: 290 SLLSSL 295
           SLLSS 
Sbjct: 271 SLLSSF 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116378|ref|XP_002331967.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222874744|gb|EEF11875.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 164/307 (53%), Positives = 201/307 (65%), Gaps = 38/307 (12%)

Query: 1   MATQKNDHDAVPESILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSLD---G 57
           MA Q +DH A  E ILENVWA++IG   + R  +  ++D  E  KSS  +E+PSLD   G
Sbjct: 1   MAIQ-SDHLATSEGILENVWASYIG---EHRGDKVTSNDEQEEIKSS--QELPSLDSRDG 54

Query: 58  SVEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAE 117
           S+E+LERLPSLGRWISMG E+WE LLDGIIP    +YK  T+ D     R  +   SS  
Sbjct: 55  SMEVLERLPSLGRWISMGTESWEGLLDGIIPEI--NYKELTSND-----RAENKGPSSLS 107

Query: 118 PGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALA 177
              +K N ++ EKV T  RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTF TAEEAALA
Sbjct: 108 ---SKQNTVKTEKVTT--RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFKTAEEAALA 162

Query: 178 YDKAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQEND---------NI 228
           YDKAALRIRGPK +LNFPLE VA  AM  + S   ++ +S  T SQ  D         + 
Sbjct: 163 YDKAALRIRGPKTNLNFPLETVA-KAMGIDCSKNDYS-VSSTTTSQGYDTSCTILGSVDK 220

Query: 229 SSSRNRKRASREWEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYL 288
            S   R+R SR+WE  +    +  ++++P   I+R A +E     + DV+EFQDLGS+YL
Sbjct: 221 VSVIPRRRVSRDWEVND----DLIIMEQPG--IQRMACVEELSVDDFDVVEFQDLGSDYL 274

Query: 289 DSLLSSL 295
           DSL SS 
Sbjct: 275 DSLFSSF 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443547|ref|XP_002273121.1| PREDICTED: ethylene-responsive transcription factor ERF091 [Vitis vinifera]

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 164/307 (53%), Positives = 198/307 (64%), Gaps = 42/307 (13%)

Query: 1   MATQKNDHDAVPESILENVWANFIGSSEDGRIQRSG-TSDASEFSKSSSWEEMPSLDG-- 57
           MAT  + H A  E++LENVWA+FIG +E      SG T    E SK+  WE +P LDG  
Sbjct: 1   MATGGDPH-AESEAMLENVWASFIGGAE-----FSGETEKTPELSKA--WEGLPCLDGRD 52

Query: 58  -SVEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSA 116
            S+EIL+RLPSLGRWISMGAE WEELLD  IP       CN           +  +++++
Sbjct: 53  GSMEILQRLPSLGRWISMGAETWEELLDSTIPERNTEQSCNH----------DLESSTTS 102

Query: 117 EPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAAL 176
                K+NAM+ EKVA+P  HYRGVRRRPWGKYAAEIRDS+RKGARVWLGTF+TAEEAAL
Sbjct: 103 SISGTKVNAMKTEKVASP--HYRGVRRRPWGKYAAEIRDSTRKGARVWLGTFETAEEAAL 160

Query: 177 AYDKAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMT--------ISQENDNI 228
           AYDKAALRIRG KA+LNFPLE VA  A     SG G +  S  +        I   N+ I
Sbjct: 161 AYDKAALRIRGAKAYLNFPLETVA-RARGIACSGKGLSYSSTASQAYGSASPILGCNERI 219

Query: 229 SSSRNRKRASREWEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYL 288
           S+   RKR S  WE       N   +++P  P K+ AS+E  + +E DVLEF DLGS+YL
Sbjct: 220 SNP--RKRPSTNWE-----ENNEVKMEKP--PSKKMASLEDVYWNEFDVLEFPDLGSDYL 270

Query: 289 DSLLSSL 295
           DSLLSS+
Sbjct: 271 DSLLSSI 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434312|ref|XP_004134940.1| PREDICTED: ethylene-responsive transcription factor ERF091-like [Cucumis sativus] gi|449479561|ref|XP_004155636.1| PREDICTED: ethylene-responsive transcription factor ERF091-like [Cucumis sativus]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/302 (52%), Positives = 197/302 (65%), Gaps = 32/302 (10%)

Query: 1   MATQKNDHDAVPESILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSL---DG 57
           MA Q++      E+ILENVWAN+IG  E G      T   S  +K+  W E+PSL   +G
Sbjct: 1   MAIQQDQ----SEAILENVWANYIG--EKGLDGNGATKSVSGSNKT--WTELPSLCYRNG 52

Query: 58  SVEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAE 117
           S+E+LERLPSLGRW+SMGAEAWEELLDGI+P        +   +D K    N+ T+ S  
Sbjct: 53  SMEVLERLPSLGRWVSMGAEAWEELLDGIVPINNTEQSVH---EDLK----NTPTSHSGF 105

Query: 118 PGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALA 177
                +N  R EKV  PT+HYRGVRRRPWGKYAAEIRDSSRKGARVWLGTF+TAEEAALA
Sbjct: 106 ----DVNTRRAEKVV-PTKHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFNTAEEAALA 160

Query: 178 YDKAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNR--- 234
           YDKAALRIRGPKAHLNFP+E V   AM    S    +  ++M  S +  + SS  +    
Sbjct: 161 YDKAALRIRGPKAHLNFPIETVT-EAMGIHLSTRNDHLNNLMPSSFQGHDSSSHGDSSIT 219

Query: 235 -KRASREWEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLS 293
            KR++REWE       ++ +++     +KR  S+ + F ++ DV EFQDLGS YLD+LLS
Sbjct: 220 GKRSTREWE----DNFDFNIMEFEQPMLKRKTSINNMFYNDFDVFEFQDLGSGYLDNLLS 275

Query: 294 SL 295
           SL
Sbjct: 276 SL 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546611|ref|XP_003541718.1| PREDICTED: ethylene-responsive transcription factor ERF091-like [Glycine max]

 Score =  253 bits (646), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 162/294 (55%), Positives = 198/294 (67%), Gaps = 39/294 (13%)

Query: 7   DHDAVPESILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSLDG---SVEILE 63
           +H A  E ILENVWA  + S  DG   R G  DA+E   S+SWEE+P+LDG   S+EIL+
Sbjct: 6   NHGATSEGILENVWAKIMSS--DGADGRKG--DAAE--SSNSWEELPNLDGREGSMEILQ 59

Query: 64  RLPSLGRWISMGAEAWEELLDGII-PTTKESYKCNTTGDDSKICRINSNTASSAEPGPNK 122
           RLPSLGRWISMGA+ WEE+LDGII P T  S + +++ ++ +I         SA    NK
Sbjct: 60  RLPSLGRWISMGADFWEEVLDGIILPNT--SNREDSSHNNLEI--------GSANETRNK 109

Query: 123 M-NAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKA 181
           + +A+R+EK  T  +HYRGVRRRPWGKYAAEIRDSS+KGARVWLGTFDTAEEAALAYDKA
Sbjct: 110 VEDALRIEKAIT--KHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKA 167

Query: 182 ALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNRKRASREW 241
           ALRIRGPKA+LNFPLE  A NA+A +  G   N L+   I  +   I+S   RKRAS E 
Sbjct: 168 ALRIRGPKAYLNFPLERGA-NALACDHKGT--NHLACTCIGNKEKLINS---RKRASMER 221

Query: 242 EYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLSSL 295
           E     A +  + ++PAT       +E    +EL    FQDLGS+YLDSLLSS 
Sbjct: 222 E-----AFDDMVNEQPATK-----KLECMVENELGAFVFQDLGSDYLDSLLSSF 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557719|ref|XP_003547160.1| PREDICTED: ethylene-responsive transcription factor ERF091-like [Glycine max]

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 156/294 (53%), Positives = 194/294 (65%), Gaps = 38/294 (12%)

Query: 7   DHDAVPESILENVWANFIGSSE-DGRIQRSGTSDASEFSKSSSWEEMPSLDG---SVEIL 62
           +H A  E ILENVWA  + S   DGR       DA+E S  +SWEE+P+LDG   S+EIL
Sbjct: 6   NHGATSEGILENVWAKIMSSDRADGR-----KGDAAECS--NSWEELPNLDGREGSMEIL 58

Query: 63  ERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAEPGPNK 122
           +RLPSLGRWISMGA+ WEE+L+GII     + + + + ++ +I         SA    NK
Sbjct: 59  QRLPSLGRWISMGADFWEEVLEGIILPNTSNTEYSGSNNNLEI--------GSANETHNK 110

Query: 123 M-NAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKA 181
           + +A+R+EK  + T+HYRGVRRRPWGKYAAEIRDSS+KGARVWLGTFDTAEEAAL+YDKA
Sbjct: 111 VGDAVRIEK--SVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALSYDKA 168

Query: 182 ALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNRKRASREW 241
           ALRIRGPKA+LNFPLE VA NA+A +        L+   I  +   I+S   RKRASRE 
Sbjct: 169 ALRIRGPKAYLNFPLEMVA-NALACDHKAV--THLACTCIGNKEKLINS---RKRASRER 222

Query: 242 EYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLSSL 295
           E     A +  M ++PAT       +E    +EL    F DLGS+YLDSLLSS 
Sbjct: 223 E-----AFDDIMNEQPATK-----KLECMVENELGAFVFHDLGSDYLDSLLSSF 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446831|ref|XP_003593691.1| Ethylene responsive transcription factor 1b [Medicago truncatula] gi|355482739|gb|AES63942.1| Ethylene responsive transcription factor 1b [Medicago truncatula]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 149/299 (49%), Positives = 187/299 (62%), Gaps = 43/299 (14%)

Query: 6   NDHDAVPE-SILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSL---DGSVEI 61
           NDH A  E SILEN+WA    +S D R      ++ +E   S++WEE+P+L   DGS+EI
Sbjct: 12  NDHHATSEGSILENIWAKI--TSSDAR------TNGNEAECSNTWEELPNLGERDGSMEI 63

Query: 62  LERLPSLGRWISMGAEAWEELLDGIIP----TTKESYKCNTTGDDSKICRINSNTASSAE 117
           L+RLPSLGRWISMGA+ WEELLD I+P    + KE + CN      +I  +N +     E
Sbjct: 64  LQRLPSLGRWISMGADYWEELLDDILPINAISNKEDFSCNKK---MEIESVNKSKEKVEE 120

Query: 118 PGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALA 177
            G  K    RVEK      HYRGVRRRPWGKYAAEIRDSS+KG+RVWLGTFDTAE+AALA
Sbjct: 121 DGVRK-EKKRVEK------HYRGVRRRPWGKYAAEIRDSSKKGSRVWLGTFDTAEQAALA 173

Query: 178 YDKAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNRKRA 237
           YDKAALRIRG KA LNFP+E VAN       +  G+    ++ +++    + S   RKR 
Sbjct: 174 YDKAALRIRGSKACLNFPIESVANT------NTLGYGKKGIVDVTKRESLLDS---RKRG 224

Query: 238 SRE-WEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLSSL 295
            R+  E+ ++       I+E A   K+ A +E     E DV  FQDLG +YLDSLLSS 
Sbjct: 225 LRDRGEFVDV-----MNIEETAN--KKMAVLELEDMLENDVFVFQDLGIDYLDSLLSSF 276

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563028|ref|XP_002522518.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223538209|gb|EEF39818.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 152/301 (50%), Positives = 181/301 (60%), Gaps = 69/301 (22%)

Query: 1   MATQKNDHDAVPESILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSLDG--- 57
           MA Q + H      +LENVWA++IG  E G+   +  SD  + SK+  WEE+P+LDG   
Sbjct: 9   MAMQSDHH------LLENVWASYIGG-EGGK--PTSMSDQDQVSKT--WEELPNLDGRDG 57

Query: 58  SVEILERLPSLGRWISMGAEAWEELLDGI-IPT-TKESYKCNTTGDDSKICRINSNTASS 115
           + E+LERLPSLGRWISMGAE WEELL GI IPT T     CN             N  SS
Sbjct: 58  TAEMLERLPSLGRWISMGAETWEELLAGINIPTSTNTKLSCN------------ENMPSS 105

Query: 116 AEPGPNK-MNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEA 174
                NK +N ++ E     TRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAE A
Sbjct: 106 ENRSLNKPINGVKGENKKVATRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEAA 165

Query: 175 ALAYDKAALRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNR 234
           ALAYDKAALRIRGPKA+LNFPLE VA  AM  +           M + + +D        
Sbjct: 166 ALAYDKAALRIRGPKAYLNFPLETVA-KAMGID-----------MELEKNDD-------- 205

Query: 235 KRASREWEYQNIGATNYTMIDEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLSS 294
                             M+DEPA     T    ++FG++ +++EFQDLGS+YLDSLLSS
Sbjct: 206 -----------------AMVDEPALA---TVEASTSFGNDFNIVEFQDLGSDYLDSLLSS 245

Query: 295 L 295
            
Sbjct: 246 F 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866351|emb|CAN84147.1| hypothetical protein VITISV_020435 [Vitis vinifera]

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 145/204 (71%), Gaps = 24/204 (11%)

Query: 1   MATQKNDHDAVPESILENVWANFIGSSEDGRIQRSG-TSDASEFSKSSSWEEMPSLDG-- 57
           MAT  + H A  E++LENVWA+FIG +E      SG T    E SK+  WE +P LDG  
Sbjct: 1   MATGGDPH-AESEAMLENVWASFIGGAEF-----SGETEKTPELSKA--WEGLPCLDGRD 52

Query: 58  -SVEILERLPSLGRWISMGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSA 116
            S+EIL+RLPSLGRWISMGAE WEELLD  IP       CN           +  +++++
Sbjct: 53  GSMEILQRLPSLGRWISMGAETWEELLDSTIPERNTEQSCNH----------DLESSTTS 102

Query: 117 EPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAAL 176
                K+NAM+ EKVA+P  HYRGVRRRPWGKYAAEIRDS+RKGARVWLGTF+TAEEAAL
Sbjct: 103 SISGTKVNAMKTEKVASP--HYRGVRRRPWGKYAAEIRDSTRKGARVWLGTFETAEEAAL 160

Query: 177 AYDKAALRIRGPKAHLNFPLEEVA 200
           AYDKAALRIRG KA+LNFPLE VA
Sbjct: 161 AYDKAALRIRGAKAYLNFPLETVA 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413948489|gb|AFW81138.1| putative AP2/EREBP transcription factor superfamily protein [Zea mays]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/292 (38%), Positives = 152/292 (52%), Gaps = 42/292 (14%)

Query: 14  SILENVWANFIGSSEDGRIQRSGTSDASEFSKSSSWEEMPSLDGSVEILERLPSLGRWIS 73
           +ILENVWA  IGS         GT  A   ++    E          ILERLPSLGRWIS
Sbjct: 20  NILENVWAAIIGS---------GTPAAPSTTEMRPPEA---------ILERLPSLGRWIS 61

Query: 74  MGAEAWEELLDGIIPTTKESYKCNTTGDDSKICRINSNTASSAEPGPNKMNAMRVEKVAT 133
           MGAE W+ELL   +     +     +G+      I ++ A+S E   ++ +  R    + 
Sbjct: 62  MGAEEWDELL---LNGAALASDAAASGE----LLIAASPAASQEA--DRQHGHRASCSSK 112

Query: 134 PTRH---YRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKA 190
                  YRGVRRRPWGK+AAEIRD+ RKGARVWLGTF TAE+AALAYDKAALR+RGP+A
Sbjct: 113 AAAACKSYRGVRRRPWGKFAAEIRDTRRKGARVWLGTFATAEDAALAYDKAALRMRGPRA 172

Query: 191 HLNFPLEEVANNAMATEFSGAGFNDLSMMT-----ISQENDNISSSRNRKRASREWEYQN 245
           HLNFPL+ V     A      G  + + +      ++  +D+   +R+  R+      ++
Sbjct: 173 HLNFPLDVVQRELAAAAARDDGCAETARVLRRKRRVANHDDSAVGTRSHHRSVMPATGRD 232

Query: 246 IGATNYTMI----DEPATPIKRTASMESAFGHELDVLEFQDLGSEYLDSLLS 293
              T  +      D+   P        S  G    V+EF+D+G EY D L +
Sbjct: 233 PTPTMVSFACARKDQGTPPAMMQGRSTSDPGA---VIEFEDIGGEYWDYLFT 281

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2124504	303	AT4G18450 [Arabidopsis thalian	0.332	0.323	0.480	2e-32
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.477	0.580	0.360	3.7e-22
TAIR|locus:2042496	243	ERF15 "ethylene-responsive ele	0.566	0.687	0.36	3.9e-21
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.538	0.651	0.312	3.1e-19
TAIR|locus:2151591	241	ERF104 "ethylene response fact	0.508	0.622	0.369	1.1e-18
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.542	0.528	0.349	1.4e-18
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.210	0.280	0.661	1.7e-18
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.288	0.422	0.471	3.6e-18
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.267	0.280	0.544	1.6e-17
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.210	0.206	0.612	1.6e-17

TAIR|locus:2124504 AT4G18450 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
 Identities = 50/104 (48%), Positives = 60/104 (57%)

Query:   130 KVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTXXXXXXXXXXXXXRIRGP- 188
             +V+  TR YRGVR+RPWGK+AAEIRDS+R G RVWLGTF T             RIRG  
Sbjct:   102 RVSCKTRKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQ 161

Query:   189 KAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSR 232
             KAH NF LE V   AM  + +   +     M  S  +D + SSR
Sbjct:   162 KAHTNFQLETVIK-AMEMDCNPNYYR----MNNSNTSDPLRSSR 200

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 53/147 (36%), Positives = 76/147 (51%)

Query:   114 SSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTXXX 173
             ++ E  P K  A+ V + A   +HYRGVR+RPWGK+AAEIRD ++ GARVWLGTF+T   
Sbjct:    95 TAMEEKPKK--AIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAED 152

Query:   174 XXXXXXXXXXRIRGPKAHLNFPLEEVANNA----MATEFSGAGFNDLSMMTISQENDNIS 229
                       R+RG +A LNFPL   +       + ++ S +  +  S  T S EN  + 
Sbjct:   153 AALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSSSENGKLK 212

Query:   230 SSRNRKRASREWEYQNIGATNYTMIDE 256
               R  +  + E         + T +DE
Sbjct:   213 RRRKAENLTSEVVQVKCEVGDETRVDE 239

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2042496 ERF15 "ethylene-responsive element binding factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 63/175 (36%), Positives = 88/175 (50%)

Query:   124 NAMRVEKVATPT-RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTXXXXXXXXXXXX 182
             N+   EKV     R YRGVR+RPWGK+AAEIRDS+R G RVWLGTFD             
Sbjct:    71 NSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAA 130

Query:   183 XRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNRKRASREWE 242
                +G  A LNFP+E V  +    E          +M + +++    S RNR R  +   
Sbjct:   131 FATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKH----SLRNRPRGKKRSS 186

Query:   243 YQNIGATNYTMIDEPATP--IKRTASMESAFGHELDVLE-FQDLGSEYLDSLLSS 294
               +  ++N +     ++     R++S +S    E   L  F+DLG+EYL+ LL S
Sbjct:   187 SSSSSSSNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLMS 241

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 51/163 (31%), Positives = 85/163 (52%)

Query:   136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTXXXXXXXXXXXXXRIRGPKAHLNFP 195
             + YRGVR+RPWGK+AAEIRDS+RKG RVWLGTFDT              ++G  A LNFP
Sbjct:    80 KSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139

Query:   196 LEEVANNAMATEFSGAGFNDLSMMTISQENDNISSSRNRKRASREWEYQNI--GATNYTM 253
              + V  +    E       +  ++ + +++   +  R +K++S      +    +++Y+ 
Sbjct:   140 ADVVEESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKKKSSSSSTLTSSPSSSSSYSS 199

Query:   254 IDEPATPIKRTASMESAFGHELD--VLEFQDLGSEYLDSLLSS 294
                 ++   R+         E +  ++  +DLG+EYL+ L+ S
Sbjct:   200 SSSSSSLSSRSRKQSVVMTQESNTTLVVLEDLGAEYLEELMRS 242

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2151591 ERF104 "ethylene response factor 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 61/165 (36%), Positives = 77/165 (46%)

Query:   109 NSNTASSAEPGPNKMNAMRVEKVATPT----RHYRGVRRRPWGKYAAEIRDSSRKGARVW 164
             NS       P PN ++  R     T      RHYRGVRRRPWGKYAAEIRD ++KG R+W
Sbjct:    56 NSTLNQRKPPLPN-LSVSRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIW 114

Query:   165 LGTFDTXXXXXXXXXXXXXRIRGPKAHLNFPLEEVANNAMATEFSGAGFNDLSMMTISQE 224
             LGT+DT             ++RG KA LNFPL+    +      SG G   L      ++
Sbjct:   115 LGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETC---SGEGVIGLG----KRK 167

Query:   225 NDNISSSRNRK--RASREWEYQNIGATNYTMIDEPATPIKRTASM 267
              D  S     K  R   E E  N   T    + EP  P+  ++ M
Sbjct:   168 RDKGSPPEEEKAARVKVEEEESNTSETTEAEV-EPVVPLTPSSWM 211

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 58/166 (34%), Positives = 85/166 (51%)

Query:   110 SNTASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFD 169
             ++T ++  PG  +     V  VA+  +HYRGVR+RPWGK+AAEIRD ++ GARVWLGTFD
Sbjct:   122 TSTEATVTPGIREGEGEAVA-VASRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFD 180

Query:   170 TXXXXXXXXXXXXXRIRGPKAHLNFPLEEVANNAMATEFSGAG----FND-LSMMTISQE 224
             +             R+RG +A LNFPL   +  A A   + AG    + D  S  + S  
Sbjct:   181 SAEEAAVAYDRAAYRMRGSRALLNFPLRIGSEIAAAAAAAAAGNKRPYPDPASSGSSSPS 240

Query:   225 NDNISSSRNRKRASREWEYQNIGATNYTMIDEPATPIKRTASMESA 270
             + + SSS +   + +  +     A +  M   P  P    A ++ A
Sbjct:   241 SSSSSSSSSSSGSPKRRKRGEAAAASMAMALVPPPPPPAQAPVQLA 286

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 41/62 (66%), Positives = 45/62 (72%)

Query:   136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTXXXXXXXXXXXXXRIRGPKAHLNFP 195
             RHYRGVRRRPWGKYAAEIRD ++KG RVWLGTFDT             ++RG KA LNFP
Sbjct:    70 RHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFP 129

Query:   196 LE 197
             LE
Sbjct:   130 LE 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 42/89 (47%), Positives = 57/89 (64%)

Query:   109 NSNTASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTF 168
             ++ T+   E   N+    R E+    TRHYRGVRRRPWGK+AAEIRD ++KG+R+WLGTF
Sbjct:    82 STTTSPEVETVSNRKKTKRFEE----TRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTF 137

Query:   169 DTXXXXXXXXXXXXXRIRGPKAHLNFPLE 197
             ++             ++RG KA LNFPL+
Sbjct:   138 ESDIDAARAYDYAAFKLRGRKAVLNFPLD 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 43/79 (54%), Positives = 49/79 (62%)

Query:   132 ATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTXXXXXXXXXXXXXRIRGPKAH 191
             A   RHYRGVR RPWGK+AAEIRD +R+G RVWLGTF+T             R+RG KA 
Sbjct:   131 AEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAI 190

Query:   192 LNFPLEEVANNAMATEFSG 210
             LNFPLE    N  A +  G
Sbjct:   191 LNFPLEVDKWNPRAEDGRG 209

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 38/62 (61%), Positives = 46/62 (74%)

Query:   136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTXXXXXXXXXXXXXRIRGPKAHLNFP 195
             +HYRGVR+RPWGK+AAEIRD +++G+RVWLGTFDT             R+RG KA LNFP
Sbjct:   154 KHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213

Query:   196 LE 197
             LE
Sbjct:   214 LE 215

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49515	ERF91_ARATH	No assigned EC number	0.3527	0.8338	0.8118	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003017001 SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (277 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	6e-32
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-30
pfam00847	53	pfam00847, AP2, AP2 domain	6e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  112 bits (283), Expect = 6e-32
 Identities = 44/65 (67%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 137 HYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPL 196
            YRGVR+RPWGK+ AEIRD S KG RVWLGTFDTAEEAA AYD+AA + RG  A LNFP 
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 197 EEVAN 201
               +
Sbjct: 60  SLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  107 bits (270), Expect = 4e-30
 Identities = 43/59 (72%), Positives = 49/59 (83%), Gaps = 1/59 (1%)

Query: 137 HYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFP 195
            YRGVR+RPWGK+ AEIRD S  G R+WLGTFDTAEEAA AYD+AAL++RG  A LNFP
Sbjct: 2   KYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 64.6 bits (158), Expect = 6e-14
 Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 137 HYRGVRRRP-WGKYAAEIRD-SSRKGARVWLGTFDTAEEAALAYDKAALRIRG 187
            Y+GVR    WG++ AEIRD   +K  R  LGTF T EEAA A   A L++RG
Sbjct: 2   GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.81
PHA00280	121	putative NHN endonuclease	99.67
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.18

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=2.8e-20  Score=138.49  Aligned_cols=63  Identities=68%  Similarity=1.150  Sum_probs=59.4

Q ss_pred             ceeeeEECCCCeEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCchhhh
Q 037347          137 HYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLEEVA  200 (295)
Q Consensus       137 ~YRGV~~r~~GKW~A~Ir~~~~kGkri~LGtFdT~EEAArAYD~AAikl~G~~A~lNFP~~~~~  200 (295)
                      +|+||+++++|||+|+|+++ .+|+++|||+|+|+||||+|||.++++++|.++.+|||.++|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~-~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDP-SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEec-CCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            59999999999999999986 3689999999999999999999999999999999999999886

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.81  E-value=4.8e-20  Score=135.54  Aligned_cols=60  Identities=72%  Similarity=1.223  Sum_probs=56.5

Q ss_pred             CceeeeEECCCCeEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 037347          136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPL  196 (295)
Q Consensus       136 S~YRGV~~r~~GKW~A~Ir~~~~kGkri~LGtFdT~EEAArAYD~AAikl~G~~A~lNFP~  196 (295)
                      |+|+||+++++|||+|+|+++. .|+++|||+|+|+||||+|||.++++++|.++.+|||.
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~   60 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD   60 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCC
Confidence            6899999999999999999763 48999999999999999999999999999999999996

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.67  E-value=5.2e-17  Score=136.49  Aligned_cols=77  Identities=14%  Similarity=0.167  Sum_probs=70.2

Q ss_pred             CCCCCCCCCccccccccCCCCCCCCceeeeEECC-CCeEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCC
Q 037347          112 TASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRP-WGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKA  190 (295)
Q Consensus       112 ~~snl~pat~k~N~~n~~~~~~~tS~YRGV~~r~-~GKW~A~Ir~~~~kGkri~LGtFdT~EEAArAYD~AAikl~G~~A  190 (295)
                      ..+||+.+|+.+|++|++..+.|+|||+||++++ .|||+|+|+   .+||+++||.|+++|+|+.||+ ++.++||+||
T Consensus        43 ri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~---~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa  118 (121)
T PHA00280         43 ALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVT---AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFA  118 (121)
T ss_pred             cHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEE---ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhccc
Confidence            4678999999999999999999999999999875 499999999   5699999999999999999997 7789999998


Q ss_pred             CC
Q 037347          191 HL  192 (295)
Q Consensus       191 ~l  192 (295)
                      ..
T Consensus       119 ~~  120 (121)
T PHA00280        119 RF  120 (121)
T ss_pred             cC
Confidence            63

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.18  E-value=5.6e-11  Score=85.28  Aligned_cols=53  Identities=34%  Similarity=0.457  Sum_probs=46.1

Q ss_pred             CceeeeEECC-CCeEEEEEecCCCCC--eEEecCCCCCHHHHHHHHHHHHHHhcCC
Q 037347          136 RHYRGVRRRP-WGKYAAEIRDSSRKG--ARVWLGTFDTAEEAALAYDKAALRIRGP  188 (295)
Q Consensus       136 S~YRGV~~r~-~GKW~A~Ir~~~~kG--kri~LGtFdT~EEAArAYD~AAikl~G~  188 (295)
                      |+|+||++++ .++|+|+|++...+|  ++++||.|++++||++||+.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999876 599999999853333  9999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		7e-16
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		8e-16

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTXXXXXXXXXXXXXRIRGPKAHLNFP 195
           +HYRGVR+RPWGK+AAEIRD ++ GARVWLGTF+T             R+RG +A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 196 L 196
           L
Sbjct: 61  L 61

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTXXXXXXXXXXXXXRIRGPKAHLNFP 195
           +HYRGVR+RPWGK+AAEIRD ++ GARVWLGTF+T             R+RG +A LNFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 196 L 196
           L
Sbjct: 64  L 64
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1gcc_A	63	Ethylene responsive element binding factor 1; tran	7e-42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  137 bits (348), Expect = 7e-42
 Identities = 46/62 (74%), Positives = 56/62 (90%)

Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFP 195
           +HYRGVR+RPWGK+AAEIRD ++ GARVWLGTF+TAE+AALAYD+AA R+RG +A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 196 LE 197
           L 
Sbjct: 61  LR 62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 47/341 (13%), Positives = 99/341 (29%), Gaps = 75/341 (21%)

Query: 1   MATQKNDHDAVPESILENVWANFIGSSEDGRIQRSGTSDASEFSKSS-SWEEMPSLDGSV 59
           M  +  +H    + IL      F+   ++   +     D  +  KS  S EE+  +  S 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFV---DNFDCK-----DVQDMPKSILSKEEIDHIIMSK 58

Query: 60  EILERLPSLGRWI--SMGAEAWEELLDGIIPT------TKESYKCNTTGDDSKI---CRI 108
           + +     L  W   S   E  ++ ++ ++        +    +       +++    R 
Sbjct: 59  DAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR- 116

Query: 109 NSNTASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPW---------GK--YAAE-IRDS 156
                +  +    K N  R++      +    +R             GK   A +     
Sbjct: 117 -DRLYNDNQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 157 SRKGA---RV-WL--GTFDTAEE-----AALAYDKAALRIRGPKAHLNFPLE-EVANNAM 204
             +     ++ WL     ++ E        L Y              N  L        +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 205 ATEFSGAGF-NDLSMMTISQENDNISSSRNRKRASREWEYQNIGA-----TNYTMIDEPA 258
                   + N L ++       N+ +       ++ W   N+       T +  + +  
Sbjct: 235 RRLLKSKPYENCLLVL------LNVQN-------AKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 259 TPIKRTA-SMESAFGHELDVL---EFQDLGSEYLDSLLSSL 295
           +    T  S++    H    L   E + L  +YLD     L
Sbjct: 282 SAATTTHISLD----HHSMTLTPDEVKSLLLKYLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.9
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	93.7
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	86.41

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.90  E-value=1.9e-24  Score=161.18  Aligned_cols=61  Identities=75%  Similarity=1.366  Sum_probs=58.0

Q ss_pred             ceeeeEECCCCeEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 037347          137 HYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLE  197 (295)
Q Consensus       137 ~YRGV~~r~~GKW~A~Ir~~~~kGkri~LGtFdT~EEAArAYD~AAikl~G~~A~lNFP~~  197 (295)
                      +||||+++++|||+|+|+++..+|+++|||+|+|+||||+|||.|+++++|.+|.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            7999999999999999999866789999999999999999999999999999999999964

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=93.70  E-value=0.00035  Score=59.59  Aligned_cols=63  Identities=10%  Similarity=-0.088  Sum_probs=46.4

Q ss_pred             CCCCCCCCCccccccccCCCCCCCCceeeeEECCCCeEEEEEecCCCCCeEEecCCCCCHHHHHHHHH
Q 037347          112 TASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYD  179 (295)
Q Consensus       112 ~~snl~pat~k~N~~n~~~~~~~tS~YRGV~~r~~GKW~A~Ir~~~~kGkri~LGtFdT~EEAArAYD  179 (295)
                      ..+||+-+|+++|.+++....... .++||.+...++|.+.|...    +..+||.|+|.+|||++|.
T Consensus        84 ~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~----~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           84 LSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS----PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC----TTSCEEEESCHHHHHHHHT
T ss_pred             CHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc----CCceEEeeCCHHHHHHHHC
Confidence            467899999999988766554332 25677653336788888843    3467899999999999963

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=86.41  E-value=0.43  Score=36.87  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=19.9

Q ss_pred             CCCCceeeeEECCC-CeEEEEEecC
Q 037347          133 TPTRHYRGVRRRPW-GKYAAEIRDS  156 (295)
Q Consensus       133 ~~tS~YRGV~~r~~-GKW~A~Ir~~  156 (295)
                      ...|+|.||++.+. +.|.|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            45699999998865 9999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-36

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (309), Expect = 2e-36
 Identities = 46/62 (74%), Positives = 56/62 (90%)

Query: 136 RHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFP 195
           +HYRGVR+RPWGK+AAEIRD ++ GARVWLGTF+TAE+AALAYD+AA R+RG +A LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 196 LE 197
           L 
Sbjct: 61  LR 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.9e-25  Score=165.35  Aligned_cols=61  Identities=75%  Similarity=1.366  Sum_probs=58.4

Q ss_pred             ceeeeEECCCCeEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 037347          137 HYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLE  197 (295)
Q Consensus       137 ~YRGV~~r~~GKW~A~Ir~~~~kGkri~LGtFdT~EEAArAYD~AAikl~G~~A~lNFP~~  197 (295)
                      +||||+++++|||+|+|+++..+++++|||+|+|+||||+|||+||++++|.++.+|||++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            6999999999999999999878889999999999999999999999999999999999975