Citrus Sinensis ID: 037402

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWLSSSKNL
cHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEcccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEccccccEEcEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHccccc
cHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEEccHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccc
MWKLSGILFELLAVCLGvdrkhykkffedgysimrlnfyppcnnsaltlgtsphydpssITILLQERVEGlevfsnnkwqtvrprpdALVIIIGDTFMALSNGIYKSCLHRAVVNGErerrslaffvtpkadkvvrppqdlicregtrlypdftwsqllgftqkhhrvdaatfpsFVNWLSSSKNL
MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQERVEGLEvfsnnkwqtvrprPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLaffvtpkadkvvrppqDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFpsfvnwlsssknl
MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWLSSSKNL
**KLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWL******
*WKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWL******
MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWLSSSKNL
MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWLSSS***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWLSSSKNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query186 2.2.26 [Sep-21-2011]
Q39111378 Gibberellin 20 oxidase 2 yes no 0.994 0.489 0.6 7e-63
Q39112380 Gibberellin 20 oxidase 3 no no 1.0 0.489 0.563 1e-59
Q39110377 Gibberellin 20 oxidase 1 no no 0.973 0.480 0.585 6e-59
O04706365 Gibberellin 20 oxidase 1- N/A no 0.967 0.493 0.572 2e-56
O04705361 Gibberellin 20 oxidase 1- N/A no 0.994 0.512 0.556 3e-56
O04707365 Gibberellin 20 oxidase 1- N/A no 0.967 0.493 0.572 3e-56
P93771372 Gibberellin 20 oxidase 1 yes no 1.0 0.5 0.544 2e-55
Q0JH50389 Gibberellin 20 oxidase 2 no no 0.951 0.455 0.572 2e-55
P0C5H5389 Gibberellin 20 oxidase 2 N/A no 0.951 0.455 0.572 2e-55
D4N502360 Codeine O-demethylase OS= N/A no 0.946 0.488 0.374 2e-28
>sp|Q39111|GAOX2_ARATH Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1 Back     alignment and function desciption
 Score =  239 bits (610), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 111/185 (60%), Positives = 138/185 (74%)

Query: 1   MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSI 60
           M  LS  + ELL + LGV+R +++ FFE+  SIMRLN YPPC    LTLGT PH DPSS+
Sbjct: 192 MSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSL 251

Query: 61  TILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERER 120
           TIL Q+ V GL+VF +N+WQ++RP P A V+ IGDTFMALSNGI+KSCLHRAVVN E  R
Sbjct: 252 TILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESAR 311

Query: 121 RSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWL 180
           +S+AFF+ PK DKVV+PP D++ +  TR YPDFTWS  L FTQKH+R D  T  SF NW+
Sbjct: 312 KSMAFFLCPKKDKVVKPPSDILEKMKTRKYPDFTWSMFLEFTQKHYRADVNTLDSFSNWV 371

Query: 181 SSSKN 185
            ++ N
Sbjct: 372 ITNNN 376
Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. GA53 is less effectively oxidized than GA12, and GA25 is also formed as a minor product.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q39112|GAOX3_ARATH Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1 Back     alignment and function description
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|P93771|GAOX1_ORYSJ Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|Q0JH50|GAOX2_ORYSJ Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
224096043 378 gibberellin 20-oxidase [Populus trichoca 0.989 0.486 0.739 4e-77
255572455 387 gibberellin 20-oxidase, putative [Ricinu 0.989 0.475 0.744 6e-77
224083474 379 gibberellin 20-oxidase [Populus trichoca 0.989 0.485 0.728 6e-76
449451305 353 PREDICTED: gibberellin 20 oxidase 2-like 0.978 0.515 0.708 2e-72
222875436 378 gibberellin 20-oxidase [Gossypium hirsut 0.983 0.484 0.717 2e-71
147916856 381 GA 20-oxidase [Paeonia suffruticosa] 0.989 0.482 0.711 3e-71
255573359 380 gibberellin 20-oxidase, putative [Ricinu 0.989 0.484 0.679 4e-68
357464719 382 Gibberellin 20 oxidase [Medicago truncat 0.978 0.476 0.670 6e-68
225459697 378 PREDICTED: gibberellin 20 oxidase 2 [Vit 0.983 0.484 0.677 1e-67
224082360 341 gibberellin 20-oxidase [Populus trichoca 0.994 0.542 0.681 1e-67
>gi|224096043|ref|XP_002310523.1| gibberellin 20-oxidase [Populus trichocarpa] gi|222853426|gb|EEE90973.1| gibberellin 20-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/184 (73%), Positives = 156/184 (84%)

Query: 1   MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSI 60
           M K+S ++FELLA+ LGVDR HY+KFFEDG SIMR N+YPPCNNS LTLGT PH DP+S+
Sbjct: 191 MKKVSLVIFELLAISLGVDRLHYRKFFEDGSSIMRCNYYPPCNNSTLTLGTGPHCDPTSL 250

Query: 61  TILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERER 120
           TIL Q++V GL+VFSNNKW  +RPRPDALV+ IGDTFMALSNG YKSCLHRAVVN + ER
Sbjct: 251 TILHQDQVGGLQVFSNNKWLAIRPRPDALVVNIGDTFMALSNGRYKSCLHRAVVNRDSER 310

Query: 121 RSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWL 180
           RSL FFV+PK +KVVRPPQDL+ REG R+YPDFTWS LL FTQKH+R D AT  SF+ WL
Sbjct: 311 RSLVFFVSPKEEKVVRPPQDLVSREGQRIYPDFTWSDLLEFTQKHYRADVATLQSFIQWL 370

Query: 181 SSSK 184
           SSSK
Sbjct: 371 SSSK 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572455|ref|XP_002527163.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223533472|gb|EEF35218.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224083474|ref|XP_002307041.1| gibberellin 20-oxidase [Populus trichocarpa] gi|222856490|gb|EEE94037.1| gibberellin 20-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449451305|ref|XP_004143402.1| PREDICTED: gibberellin 20 oxidase 2-like [Cucumis sativus] gi|449518767|ref|XP_004166407.1| PREDICTED: gibberellin 20 oxidase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|222875436|gb|ACM68924.1| gibberellin 20-oxidase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|147916856|gb|ABQ52488.1| GA 20-oxidase [Paeonia suffruticosa] Back     alignment and taxonomy information
>gi|255573359|ref|XP_002527606.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223533023|gb|EEF34787.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357464719|ref|XP_003602641.1| Gibberellin 20 oxidase [Medicago truncatula] gi|355491689|gb|AES72892.1| Gibberellin 20 oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|225459697|ref|XP_002284681.1| PREDICTED: gibberellin 20 oxidase 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082360|ref|XP_002306662.1| gibberellin 20-oxidase [Populus trichocarpa] gi|222856111|gb|EEE93658.1| gibberellin 20-oxidase [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query186
TAIR|locus:2165341378 GA20OX2 "gibberellin 20 oxidas 0.994 0.489 0.6 6.6e-58
TAIR|locus:2206036376 GA20OX4 "gibberellin 20-oxidas 0.962 0.476 0.587 6.8e-56
TAIR|locus:2182875380 GA20OX3 "gibberellin 20-oxidas 0.978 0.478 0.570 2.9e-55
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.973 0.480 0.585 1.3e-54
TAIR|locus:2037159385 GA20OX5 "gibberellin 20-oxidas 0.956 0.462 0.561 3.5e-52
UNIPROTKB|P93771372 20ox1 "Gibberellin 20 oxidase 1.0 0.5 0.544 5.6e-52
UNIPROTKB|Q6L4Y3408 OSJNBb0092E21.11 "Putative gib 0.962 0.438 0.541 5.2e-49
UNIPROTKB|Q69LD8367 OSJNBa0050F10.19 "Putative gib 0.967 0.490 0.510 1e-45
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.833 0.417 0.424 1.3e-29
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.865 0.443 0.403 2.5e-26
TAIR|locus:2165341 GA20OX2 "gibberellin 20 oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 111/185 (60%), Positives = 138/185 (74%)

Query:     1 MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSI 60
             M  LS  + ELL + LGV+R +++ FFE+  SIMRLN YPPC    LTLGT PH DPSS+
Sbjct:   192 MSSLSLKIMELLGLSLGVNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSL 251

Query:    61 TILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERER 120
             TIL Q+ V GL+VF +N+WQ++RP P A V+ IGDTFMALSNGI+KSCLHRAVVN E  R
Sbjct:   252 TILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESAR 311

Query:   121 RSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWL 180
             +S+AFF+ PK DKVV+PP D++ +  TR YPDFTWS  L FTQKH+R D  T  SF NW+
Sbjct:   312 KSMAFFLCPKKDKVVKPPSDILEKMKTRKYPDFTWSMFLEFTQKHYRADVNTLDSFSNWV 371

Query:   181 SSSKN 185
              ++ N
Sbjct:   372 ITNNN 376
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009639 "response to red or far red light" evidence=IEP
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009826 "unidimensional cell growth" evidence=IGI
GO:0009908 "flower development" evidence=IGI
GO:0080167 "response to karrikin" evidence=IEP
GO:0009686 "gibberellin biosynthetic process" evidence=IDA
GO:0045544 "gibberellin 20-oxidase activity" evidence=IDA
TAIR|locus:2206036 GA20OX4 "gibberellin 20-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182875 GA20OX3 "gibberellin 20-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037159 GA20OX5 "gibberellin 20-oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P93771 20ox1 "Gibberellin 20 oxidase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6L4Y3 OSJNBb0092E21.11 "Putative gibberellin 20-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69LD8 OSJNBa0050F10.19 "Putative gibberellin 20-dioxygenase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GA20ox5
gibberellin 20-oxidase (EC-1.14.11.12) (378 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2884.1
cytokinin biosynthetic isopentenyltransferase (260 aa)
      • 0.510
gw1.X.4133.1
cytokinin biosynthetic isopentenyltransferase (294 aa)
      • 0.510
gw1.X.185.1
cytokinin biosynthetic isopentenyltransferase (295 aa)
      • 0.510
gw1.VIII.574.1
cytokinin biosynthetic isopentenyltransferase (303 aa)
      • 0.510
gw1.VIII.295.1
cytokinin biosynthetic isopentenyltransferase (294 aa)
      • 0.510
gw1.IV.412.1
cytokinin biosynthetic isopentenyltransferase (267 aa)
      • 0.510
fgenesh4_pg.C_LG_VIII000257
cytokinin biosynthetic isopentenyltransferase (279 aa)
      • 0.510
PHYA
SubName- Full=Phytochrome A; Flags- Fragment; (1126 aa)
      • 0.510
PHYB2
SubName- Full=Phytochrome B2; (1136 aa)
      • 0.502

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-126
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 6e-43
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-42
PLN02216357 PLN02216, PLN02216, protein SRG1 7e-35
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-34
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-34
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-34
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-34
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-33
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 5e-33
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-32
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-31
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-29
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 5e-29
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 3e-27
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-26
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-25
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-24
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-23
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 8e-22
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-18
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-18
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-16
PLN02485329 PLN02485, PLN02485, oxidoreductase 7e-14
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 8e-13
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 5e-12
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information 
 Score =  358 bits (922), Expect = e-126
 Identities = 128/185 (69%), Positives = 147/185 (79%)

Query: 1   MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSI 60
           M  LS  + ELL + LGVDR +Y+KFFEDG SIMR N+YPPC    LTLGT PH DP+S+
Sbjct: 175 MKTLSLKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSL 234

Query: 61  TILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERER 120
           TIL Q++V GL+VF +NKW++VRPRP ALV+ IGDTFMALSNG YKSCLHRAVVN ERER
Sbjct: 235 TILHQDQVGGLQVFVDNKWRSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERER 294

Query: 121 RSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLGFTQKHHRVDAATFPSFVNWL 180
           RSLAFF+ PK DKVVRPPQ+L+ REG R YPDFTWS LL FTQKH+R D  T  +F NWL
Sbjct: 295 RSLAFFLCPKEDKVVRPPQELVDREGPRKYPDFTWSDLLEFTQKHYRADMNTLQAFSNWL 354

Query: 181 SSSKN 185
            SS N
Sbjct: 355 QSSNN 359

Length = 361
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 186
PLN02276361 gibberellin 20-oxidase 100.0
PLN02216357 protein SRG1 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02997325 flavonol synthase 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02485329 oxidoreductase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.94
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.95
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 96.47
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 96.02
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 93.57
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 88.78
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information 
Probab=100.00  E-value=3.2e-54  Score=372.77  Aligned_cols=185  Identities=69%  Similarity=1.145  Sum_probs=176.4

Q ss_pred             CHHHHHHHHHHHHHHcCCChhhHHhhhcCCcceEEEeccCCCCCccCCCCCccCcCCCCceEEeecCcCceEEeeCCeEE
Q 037402            1 MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQERVEGLEVFSNNKWQ   80 (186)
Q Consensus         1 m~~la~~ll~~l~~~Lgl~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTll~qd~~~GLqv~~~g~W~   80 (186)
                      |.+++..||++||++||+++++|.+.+....+.+|++|||+|+.++..+|+++|||+|+||||+||+++||||+++|+|+
T Consensus       175 ~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi  254 (361)
T PLN02276        175 MKTLSLKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVFVDNKWR  254 (361)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEEECCEEE
Confidence            56899999999999999999999999988889999999999998888999999999999999999999999999999999


Q ss_pred             EeecCCCcEEEEehhhhhhhcCCcccCccceeeeCCCCcccceeeeecCCCCeEEeCCCcccCcCCCCCCCCcCHHHHHH
Q 037402           81 TVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLICREGTRLYPDFTWSQLLG  160 (186)
Q Consensus        81 ~v~p~~~~lvvn~Gd~le~~TnG~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~~i~p~~~~~~~~~~~~y~~~~~~ey~~  160 (186)
                      +|+|.+|++|||+||+||+||||+|+|+.|||+.++.++|||++||++|+.|+.|.|+++++++++|++|++++++||++
T Consensus       255 ~V~p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~~~ey~~  334 (361)
T PLN02276        255 SVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAFFLCPKEDKVVRPPQELVDREGPRKYPDFTWSDLLE  334 (361)
T ss_pred             EcCCCCCeEEEEcHHHHHHHhCCccccccceeecCCCCCEEEEEEEecCCCCCEEeCChHhcCCCCCCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHcccccCCccccccccccccCC
Q 037402          161 FTQKHHRVDAATFPSFVNWLSSSKN  185 (186)
Q Consensus       161 ~~~~~~~~~~~~l~~~~~~~~~~~~  185 (186)
                      +..++...+++.++++++.+.+|.|
T Consensus       335 ~~~~~~~~~~~~l~~~~~~~~~~~~  359 (361)
T PLN02276        335 FTQKHYRADMNTLQAFSNWLQSSNN  359 (361)
T ss_pred             HHHHhcccchhHHHHHHHHHhccCC
Confidence            8888777778889999998888876

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-25
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-25
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-23
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-18
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 4e-17
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 2e-07
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-07
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 4   LSGILFELLAVCLGVDRKHYKKF---FEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSI 60
           L+  +F+ L+V LG++    +K     E+    M++N+YP C    L LG   H D S++
Sbjct: 179 LATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL 238
Query: 61  TILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERER 120
           T +L   V GL++F   KW T +  PD++V+ IGDT   LSNG YKS LHR +VN E+ R
Sbjct: 239 TFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 121 RSLAFFVTPKADKVV-RPPQDLICREGTRLYPDFTWSQ 157
            S A F  P  DK+V +P  +++  E    +P  T++Q
Sbjct: 299 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ 336
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query186
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-75
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-68
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-59
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-48
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-42
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-41
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  228 bits (584), Expect = 3e-75
 Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 1   MWKLSGILFELLAVCLGVDRKHYKKFF---EDGYSIMRLNFYPPCNNSALTLGTSPHYDP 57
           +  L+  +F+ L+V LG++    +K     E+    M++N+YP C    L LG   H D 
Sbjct: 176 LRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDV 235

Query: 58  SSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGE 117
           S++T +L   V GL++F   KW T +  PD++V+ IGDT   LSNG YKS LHR +VN E
Sbjct: 236 SALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE 295

Query: 118 RERRSLAFFVTPKADKVV-RPPQDLICREGTRLYPDFTWSQLL 159
           + R S A F  P  DK+V +P  +++  E    +P  T++Q +
Sbjct: 296 KVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHI 338
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 96.7
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.36
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 91.03
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 90.27
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 90.12
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 89.71
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 88.04
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 83.17
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 83.11
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=100.00  E-value=1e-53  Score=363.04  Aligned_cols=185  Identities=28%  Similarity=0.524  Sum_probs=161.6

Q ss_pred             CHHHHHHHHHHHHHHcCCChhhHHhhhcC---CcceEEEeccCCCCCccCCCCCccCcCCCCceEEeec-CcCceEEeeC
Q 037402            1 MWKLSGILFELLAVCLGVDRKHYKKFFED---GYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQE-RVEGLEVFSN   76 (186)
Q Consensus         1 m~~la~~ll~~l~~~Lgl~~~~~~~~~~~---~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTll~qd-~~~GLqv~~~   76 (186)
                      |.+++.+||++|+++||+++++|.+.+..   ..+.+|++|||||++++..+|+++|||+|+||+|+|| +++||||+++
T Consensus       121 ~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~~  200 (319)
T 1w9y_A          121 LEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD  200 (319)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEET
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHhcCcCCccceeEEEecCCCcccccccccccccCCCceEEEEecCCCCeeeEeeC
Confidence            57899999999999999999999998863   5678999999999998888999999999999999995 7999999999


Q ss_pred             CeEEEeecCCCcEEEEehhhhhhhcCCcccCccceeeeCCCCcccceeeeecCCCCeEEeCCCcccCcC---CCCCCCCc
Q 037402           77 NKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLICRE---GTRLYPDF  153 (186)
Q Consensus        77 g~W~~v~p~~~~lvvn~Gd~le~~TnG~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~~i~p~~~~~~~~---~~~~y~~~  153 (186)
                      |+|++|+|.||++|||+||+||+||||+|+|+.|||+.++.++|+|++||++|+.|++|+|++++++++   +|++|+++
T Consensus       201 g~Wi~V~p~pgalvVNiGD~l~~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~  280 (319)
T 1w9y_A          201 GQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKF  280 (319)
T ss_dssp             TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCE
T ss_pred             CeEEEcccCCCcEEEEhHHHHHHHhCCeeecccceecCCCCCCceEEEEEecCCCCCeEeCchhhcCcccccCccccCcE
Confidence            999999999999999999999999999999999999999889999999999999999999999999987   59999999


Q ss_pred             CHHHHHHHHHHcccccCCc-cccccccccccCC
Q 037402          154 TWSQLLGFTQKHHRVDAAT-FPSFVNWLSSSKN  185 (186)
Q Consensus       154 ~~~ey~~~~~~~~~~~~~~-l~~~~~~~~~~~~  185 (186)
                      +++||+....+....++.. ++.+|+.++.-||
T Consensus       281 t~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (319)
T 1w9y_A          281 VFDDYMKLYAGLKFQAKEPRFEAMKAMETDVKM  313 (319)
T ss_dssp             EHHHHHHTTTTTTCSSHHHHHHHHHHC------
T ss_pred             eHHHHHHHHHhhhcCcchhHHHHHHHHhhhccc
Confidence            9999999776655555544 7888888775554
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 186
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 6e-36
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-29
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 7e-26
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 3e-22
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  126 bits (316), Expect = 6e-36
 Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 1   MWKLSGILFELLAVCLGVDRKHYKKFF---EDGYSIMRLNFYPPCNNSALTLGTSPHYDP 57
           +  L+  +F+ L+V LG++    +K     E+    M++N+YP C    L LG   H D 
Sbjct: 175 LRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDV 234

Query: 58  SSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGE 117
           S++T +L   V GL++F   KW T +  PD++V+ IGDT   LSNG YKS LHR +VN E
Sbjct: 235 SALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE 294

Query: 118 RERRSLAFFVTPKADKVV-RPPQDLICREGTRLYPDFTWSQLL 159
           + R S A F  P  DK+V +P  +++  E    +P  T++Q +
Sbjct: 295 KVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHI 337
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query186
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 93.57
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=2.7e-51  Score=343.22  Aligned_cols=178  Identities=29%  Similarity=0.545  Sum_probs=156.9

Q ss_pred             CHHHHHHHHHHHHHHcCCChhhHHhhhc---CCcceEEEeccCCCCCccCCCCCccCcCCCCceEEeec-CcCceEEeeC
Q 037402            1 MWKLSGILFELLAVCLGVDRKHYKKFFE---DGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQE-RVEGLEVFSN   76 (186)
Q Consensus         1 m~~la~~ll~~l~~~Lgl~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTll~qd-~~~GLqv~~~   76 (186)
                      |.+++.+|+++++++||+++++|.+.+.   ...+.+|++||||+++++...|+++|||+|+||+|+|+ .++||||.++
T Consensus       120 ~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~  199 (307)
T d1w9ya1         120 LEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD  199 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEET
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHhhhhccccccccceecCCCCCcccccccccccccccceeEEeeccCCCCeEEEecC
Confidence            4689999999999999999999988873   45678999999999998888999999999999999996 5899999999


Q ss_pred             CeEEEeecCCCcEEEEehhhhhhhcCCcccCccceeeeCCCCcccceeeeecCCCCeEEeCCCcccC---cCCCCCCCCc
Q 037402           77 NKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQDLIC---REGTRLYPDF  153 (186)
Q Consensus        77 g~W~~v~p~~~~lvvn~Gd~le~~TnG~~~s~~HRV~~~~~~~R~S~~~F~~p~~d~~i~p~~~~~~---~~~~~~y~~~  153 (186)
                      |+|++|+|.+|++|||+||+||+||||+|+||.|||+.+++++|||++||++|+.|++|+|++++++   +++|++|+||
T Consensus       200 g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~  279 (307)
T d1w9ya1         200 GQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKF  279 (307)
T ss_dssp             TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCE
T ss_pred             CcEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCe
Confidence            9999999999999999999999999999999999999998899999999999999999999999996   4688999999


Q ss_pred             CHHHHHHHHHHccccc-CCccccccc
Q 037402          154 TWSQLLGFTQKHHRVD-AATFPSFVN  178 (186)
Q Consensus       154 ~~~ey~~~~~~~~~~~-~~~l~~~~~  178 (186)
                      |++||++.+.+..... +..++++|-
T Consensus       280 t~~ey~~~~~~~~~~~~~~~~~~~~~  305 (307)
T d1w9ya1         280 VFDDYMKLYAGLKFQAKEPRFEAMKA  305 (307)
T ss_dssp             EHHHHHHTTTTTTCSSHHHHHHHHHH
T ss_pred             eHHHHHHHHHhccCCcccHHHHHhhc
Confidence            9999998766533333 335776664
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure