Citrus Sinensis ID: 037473

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKELQHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKIVK
cccccEEEEEEcccccccccEEEcccccccccccEEEEEcccccEEEEcccccEEEccccccccEEEEEEcccccccEEEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHcccccccccEEEccccc
ccccccEEEEccccccccccHcccccccccccEEEEEEEcccccEEEEEEcccEEEcccEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHcc
MDEGMQVMavncyppcpqpdiafglpphsdyscLTIVLQSSegleflgkedeswrkvpnvhvgdhLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMEtakelqhpkgykessFMDFLNFLskndiaggknfTNTLKIVK
MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKELQHPKGYKESSFMDFLNFLSkndiaggknftntlkivk
MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVVHRATLNHERTRISITslhslhslGVYVKMETAKELQHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKIVK
******VMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKELQH*KGYKESSFMDFLNFLSKNDIAGGKNFTN******
****MQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKELQHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKIVK
MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKELQHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKIVK
****MQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKELQHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKIV*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPNVHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKELQHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKIVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query150 2.2.26 [Sep-21-2011]
D4N502360 Codeine O-demethylase OS= N/A no 0.946 0.394 0.363 1e-20
D4N501364 Probable 2-oxoglutarate/F N/A no 0.593 0.244 0.494 3e-20
D4N500364 Thebaine 6-O-demethylase N/A no 0.96 0.395 0.383 3e-20
Q39224358 Protein SRG1 OS=Arabidops no no 0.933 0.391 0.363 7e-20
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.826 0.370 0.345 6e-18
Q07512348 Flavonol synthase/flavano N/A no 0.813 0.350 0.364 2e-17
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.586 0.261 0.412 6e-17
Q9XHG2337 Flavonol synthase/flavano N/A no 0.78 0.347 0.356 4e-16
Q9M547334 Flavonol synthase/flavano N/A no 0.58 0.260 0.432 1e-15
P51091357 Leucoanthocyanidin dioxyg N/A no 0.593 0.249 0.428 4e-15
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function desciption
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 15/157 (9%)

Query: 2   DEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQ--SSEGLEFLGKEDESW---RK 56
           ++G+Q M +N YPPCP+P++  GL  HSD+S LTI+LQ    EGL+   +++E W   + 
Sbjct: 209 EDGLQTMRMNYYPPCPRPELVLGLTSHSDFSGLTILLQLNEVEGLQI--RKEERWISIKP 266

Query: 57  VPN---VHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKEL 113
           +P+   V+VGD LE+++NGIY+SV HRA +N  + R+SI + H          + +    
Sbjct: 267 LPDAFIVNVGDILEIMTNGIYRSVEHRAVVNSTKERLSIATFHDSKLESEIGPISSLVTP 326

Query: 114 QHPKGYKESSFMDFL--NFLSKNDIAGGKNFTNTLKI 148
           + P  +K   + D L  N   K D   GK+F + +++
Sbjct: 327 ETPALFKRGRYEDILKENLSRKLD---GKSFLDYMRM 360
Non-heme dioxygenase catalyzing the conversion of codeine to morphine. Catalyzes also, with lower efficiency, the 3-O-demethylation of thebaine to oripavine and of (S)-scoulerine to 3-O-demethylscoulerine. No activity with (S)-reticuline, salutaridine, papaverine, (S)-corytuberine, oripavine, pavine or noscapine.
Papaver somniferum (taxid: 3469)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 3EC: 2
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q9XHG2|FLS_MALDO Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|P51091|LDOX_MALDO Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
255539915 355 Hyoscyamine 6-dioxygenase, putative [Ric 0.98 0.414 0.698 1e-54
147839753 418 hypothetical protein VITISV_033210 [Viti 0.966 0.346 0.668 3e-53
225455004 355 PREDICTED: hyoscyamine 6-dioxygenase [Vi 0.966 0.408 0.668 3e-53
224057964 352 predicted protein [Populus trichocarpa] 0.966 0.411 0.668 4e-53
449458399 354 PREDICTED: hyoscyamine 6-dioxygenase-lik 0.966 0.409 0.649 5e-51
15240797 340 KAR-UP oxidoreductase 1 [Arabidopsis tha 0.966 0.426 0.567 2e-41
38260607 361 Fe2+ dioxygenase-like [Sisymbrium irio] 0.966 0.401 0.580 2e-41
38260674 366 Fe2+ dioxygenase-like [Arabidopsis areno 0.966 0.396 0.574 9e-41
38260641 356 Fe2+ dioxygenase-like [Capsella rubella] 0.966 0.407 0.586 1e-40
38260659 356 Fe2+ dioxygenase-like [Olimarabidopsis p 0.966 0.407 0.574 2e-40
>gi|255539915|ref|XP_002511022.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] gi|223550137|gb|EEF51624.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/159 (69%), Positives = 125/159 (78%), Gaps = 12/159 (7%)

Query: 1   MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVP-- 58
           ++EGMQV+AVNCYPPCP P+ A GLPPHSDY+CLTIVLQ+S GLE +   D  WR VP  
Sbjct: 199 IEEGMQVVAVNCYPPCPDPEKALGLPPHSDYTCLTIVLQNSPGLEVMDTRDGKWRLVPQI 258

Query: 59  ----NVHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKEL- 113
                VHVGDHLEVLSNG++KSVVH+ATLN ERTRISI    SLHSLG+  KMETA+EL 
Sbjct: 259 QGGLQVHVGDHLEVLSNGLFKSVVHKATLNSERTRISIA---SLHSLGMDDKMETAEELV 315

Query: 114 --QHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKIVK 150
             QHPK YKESSF DFLNFLS ND AGGK+F +TLK VK
Sbjct: 316 DDQHPKRYKESSFRDFLNFLSNNDFAGGKSFLSTLKDVK 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147839753|emb|CAN77294.1| hypothetical protein VITISV_033210 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225455004|ref|XP_002279001.1| PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera] gi|297744990|emb|CBI38582.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224057964|ref|XP_002299412.1| predicted protein [Populus trichocarpa] gi|222846670|gb|EEE84217.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449458399|ref|XP_004146935.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis sativus] gi|449525289|ref|XP_004169650.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15240797|ref|NP_196365.1| KAR-UP oxidoreductase 1 [Arabidopsis thaliana] gi|7576186|emb|CAB87937.1| putative protein [Arabidopsis thaliana] gi|332003781|gb|AED91164.1| KAR-UP oxidoreductase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|38260607|gb|AAR15425.1| Fe2+ dioxygenase-like [Sisymbrium irio] Back     alignment and taxonomy information
>gi|38260674|gb|AAR15488.1| Fe2+ dioxygenase-like [Arabidopsis arenosa] Back     alignment and taxonomy information
>gi|38260641|gb|AAR15457.1| Fe2+ dioxygenase-like [Capsella rubella] Back     alignment and taxonomy information
>gi|38260659|gb|AAR15474.1| Fe2+ dioxygenase-like [Olimarabidopsis pumila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
TAIR|locus:2183429340 KUOX1 "KAR-UP oxidoreductase 1 0.966 0.426 0.530 2.6e-38
TAIR|locus:2081962357 AT3G60290 [Arabidopsis thalian 0.94 0.394 0.484 3.3e-31
TAIR|locus:2042356357 AT2G44800 [Arabidopsis thalian 0.946 0.397 0.461 2.3e-30
TAIR|locus:2040575366 AT2G36690 [Arabidopsis thalian 0.966 0.396 0.4 1.5e-26
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.933 0.391 0.356 5.6e-19
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.913 0.376 0.362 1.4e-18
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.96 0.398 0.354 1.8e-18
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.946 0.402 0.363 2.6e-18
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.866 0.381 0.372 7.9e-18
TAIR|locus:2149907349 AT5G20550 [Arabidopsis thalian 0.78 0.335 0.387 1.6e-17
TAIR|locus:2183429 KUOX1 "KAR-UP oxidoreductase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 86/162 (53%), Positives = 108/162 (66%)

Query:     1 MDE-GMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDES----WR 55
             MDE GMQVM VNCYPPCP P+ A GLPPHSDYSC+T++LQ+ +GL+            W 
Sbjct:   180 MDENGMQVMTVNCYPPCPDPETALGLPPHSDYSCITLLLQNLDGLKIFDPMAHGGSGRWV 239

Query:    56 KVPNV------HVGDHLEVLSNGIYKSVVHRATLNHERTRISITXXXXXXXXGVYVKMET 109
              VP V      H+GDH+EVLSNG+YKS+VH+ TLN E+TRIS+         G+  KM  
Sbjct:   240 GVPQVTGVLKVHIGDHVEVLSNGLYKSIVHKVTLNEEKTRISLASLHSL---GMDDKMSV 296

Query:   110 AKEL---QHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKI 148
              +EL   ++P  YKESSF DFL+FL KNDI+ G  F +TL+I
Sbjct:   297 PRELVNDENPVRYKESSFNDFLDFLVKNDISQGDRFIDTLRI 338
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0080167 "response to karrikin" evidence=IEP
TAIR|locus:2081962 AT3G60290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042356 AT2G44800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040575 AT2G36690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149907 AT5G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
3rd Layer4.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
PLN02904357 PLN02904, PLN02904, oxidoreductase 6e-52
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-43
PLN02216357 PLN02216, PLN02216, protein SRG1 5e-27
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-26
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 4e-26
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-24
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-24
PLN02704335 PLN02704, PLN02704, flavonol synthase 6e-24
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-23
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-22
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 5e-22
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 8e-22
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 9e-22
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 5e-19
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-18
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-17
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 7e-15
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-13
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-12
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-11
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-11
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-06
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-06
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 2e-06
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 4e-04
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information 
 Score =  168 bits (426), Expect = 6e-52
 Identities = 79/156 (50%), Positives = 106/156 (67%), Gaps = 14/156 (8%)

Query: 1   MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPN- 59
           ++EG QVMAVNCYP CP+P+IA G+PPHSD+  LTI+LQSS+GL+ +   +++W  VP  
Sbjct: 203 IEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQSSQGLQIM-DCNKNWVCVPYI 261

Query: 60  -----VHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKEL- 113
                V +GD +EV+SNGIYKSVVHR T+N +  R+S     SLHSL ++ K+  A EL 
Sbjct: 262 EGALIVQLGDQVEVMSNGIYKSVVHRVTVNKDYKRLSFA---SLHSLPLHKKISPAPELV 318

Query: 114 --QHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLK 147
               P  Y E SF DFL+++S NDI   + F +TLK
Sbjct: 319 NENKPAAYGEFSFNDFLDYISSNDITQER-FIDTLK 353

Length = 357
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02997325 flavonol synthase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 90.07
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 83.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 81.97
>PLN02947 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=5.6e-44  Score=303.16  Aligned_cols=141  Identities=47%  Similarity=0.873  Sum_probs=133.5

Q ss_pred             CCCceeeEeeecCCCCCCCCcccccCcCCCCccEEEEcCC-CCeeEEecCCCceEEeec------cchhhhHhhhcCCee
Q 037473            2 DEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSS-EGLEFLGKEDESWRKVPN------VHVGDHLEVLSNGIY   74 (150)
Q Consensus         2 ~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~lTll~q~~-~GLqv~~~~~g~W~~v~p------vn~Gd~le~~Tng~~   74 (150)
                      +++.+.+|+||||||++++..+|+++|||+|+||||+|++ +||||+.  +|+|++|+|      ||+||+||+||||+|
T Consensus       221 ~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~--~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~  298 (374)
T PLN02947        221 EAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEVEGLQIMH--AGRWVTVEPIPGSFVVNVGDHLEIFSNGRY  298 (374)
T ss_pred             cCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecCCCCeeEeE--CCEEEeCCCCCCeEEEEeCceeeeeeCCEE
Confidence            3467899999999999999999999999999999999998 9999998  899999999      999999999999999


Q ss_pred             eecccccccCCCCceeEEeEecccccCCceeEEecCccc---CCCCCCCcccHHHHHHHHHhcCcCCCccccccccc
Q 037473           75 KSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKEL---QHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKI  148 (150)
Q Consensus        75 ks~~HRV~~~~~~~R~S~~~F~~~~~p~~d~~i~p~~~~---~~p~~y~~~~~~e~~~~~~~~~~~~~~~~l~~~~~  148 (150)
                      ||+.|||+.++.++||||+||   +.|+.|++|.|++++   ++|++|++++++||++.+.+....+ ++.++.+|+
T Consensus       299 kS~~HRVv~~~~~~R~Sia~F---~~P~~d~~i~Pl~~lv~~~~p~~Y~~~~~~ey~~~~~~~~~~~-~~~l~~~~~  371 (374)
T PLN02947        299 KSVLHRVRVNSTKPRISVASL---HSLPFERVVGPAPELVDEQNPRRYMDTDFATFLAYLASAEGKH-KNFLESRKL  371 (374)
T ss_pred             eccccccccCCCCCEEEEEEE---ecCCCCCEEeCChHhcCCCCCCcCCCCCHHHHHHHHHHhccCc-hhhhhhhhc
Confidence            999999999988999999999   999999999999998   6789999999999999999988887 889998886

>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-15
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-15
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 7e-15
1w9y_A319 The Structure Of Acc Oxidase Length = 319 4e-12
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 7e-05
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 13/100 (13%)
Query: 1   MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSS-EGLEFL--GKEDESW--- 54
           ++E +  M +N YP CPQP++A G+  H+D S LT +L +   GL+    GK    W   
Sbjct: 205 LEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGK----WVTA 260
Query: 55  RKVPN---VHVGDHLEVLSNGIYKSVVHRATLNHERTRIS 91
           + VP+   +H+GD LE+LSNG YKS++HR  +N E+ RIS
Sbjct: 261 KCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 8e-48
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 4e-46
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-23
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-22
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-21
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-20
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  155 bits (395), Expect = 8e-48
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 19/164 (11%)

Query: 1   MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSE--GLEFLGKEDESWRKV- 57
                    V+ YPPCP+PD+  GL  H+D   + ++ Q  +  GL+ L K+ + W  V 
Sbjct: 150 SKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGQ-WIDVP 207

Query: 58  --PN---VHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKE 112
              +   V++GD LEV++NG YKSV+HR     +  R+S+ S ++  S  V      A  
Sbjct: 208 PMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVI---YPAPA 264

Query: 113 L------QHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKIVK 150
           L      ++ + Y +  F D++   +       +     +K ++
Sbjct: 265 LVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMKAME 308
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=100.00  E-value=4e-43  Score=290.73  Aligned_cols=140  Identities=32%  Similarity=0.582  Sum_probs=127.3

Q ss_pred             CceeeEeeecCCCCCCCCcccccCcCCCCccEEEEcC-C-CCeeEEecCCCceEEeec------cchhhhHhhhcCCeee
Q 037473            4 GMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQS-S-EGLEFLGKEDESWRKVPN------VHVGDHLEVLSNGIYK   75 (150)
Q Consensus         4 ~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~lTll~q~-~-~GLqv~~~~~g~W~~v~p------vn~Gd~le~~Tng~~k   75 (150)
                      +.+.||++|||||++++..+|+++|||+|+||||+|| . +||||+.  +|+|++|+|      ||+||+||+||||+||
T Consensus       153 ~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~--~g~Wi~V~p~pgalvVNiGD~l~~~SnG~~k  230 (319)
T 1w9y_A          153 PNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK--DGQWIDVPPMRHSIVVNLGDQLEVITNGKYK  230 (319)
T ss_dssp             CEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEE--TTEEEECCCCTTCEEEEECHHHHHHTTTSSC
T ss_pred             ccceeEEEecCCCcccccccccccccCCCceEEEEecCCCCeeeEee--CCeEEEcccCCCcEEEEhHHHHHHHhCCeee
Confidence            5578999999999999889999999999999999996 5 9999986  899999998      9999999999999999


Q ss_pred             ecccccccCCCCceeEEeEecccccCCceeEEecCccc---C---CCCCCCcccHHHHHHHHHhcCcCCCccc-cccccc
Q 037473           76 SVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKEL---Q---HPKGYKESSFMDFLNFLSKNDIAGGKNF-TNTLKI  148 (150)
Q Consensus        76 s~~HRV~~~~~~~R~S~~~F~~~~~p~~d~~i~p~~~~---~---~p~~y~~~~~~e~~~~~~~~~~~~~~~~-l~~~~~  148 (150)
                      |+.|||++++.++|+|++||   +.|+.|++|.|++++   +   +|++|++++++||+..+++.++.+ +.. ++.+|+
T Consensus       231 S~~HRVv~~~~~~R~Sia~F---~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~~~~~~-~~~~~~~~~~  306 (319)
T 1w9y_A          231 SVMHRVIAQKDGARMSLASF---YNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQA-KEPRFEAMKA  306 (319)
T ss_dssp             CCCEEECCCSSSCCEEEEEE---EECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSS-HHHHHHHHHH
T ss_pred             cccceecCCCCCCceEEEEE---ecCCCCCeEeCchhhcCcccccCccccCcEeHHHHHHHHHhhhcCc-chhHHHHHHH
Confidence            99999999988999999999   999999999999998   3   489999999999999999998887 443 777775


Q ss_pred             c
Q 037473          149 V  149 (150)
Q Consensus       149 ~  149 (150)
                      .
T Consensus       307 ~  307 (319)
T 1w9y_A          307 M  307 (319)
T ss_dssp             C
T ss_pred             H
Confidence            3
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 150
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-17
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 9e-16
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 6e-10
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-08
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.8 bits (185), Expect = 1e-17
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 10/136 (7%)

Query: 1   MDEGMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSSEGLEFLGKEDESWRKVPN- 59
           ++E +  M +N YP CPQP++A G+  H+D S LT +L +      L  E +        
Sbjct: 204 LEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVP 263

Query: 60  ----VHVGDHLEVLSNGIYKSVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKEL-- 113
               +H+GD LE+LSNG YKS++HR  +N E+ RIS             + ++   E+  
Sbjct: 264 DSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPK--DKIVLKPLPEMVS 321

Query: 114 -QHPKGYKESSFMDFL 128
            + P  +   +F   +
Sbjct: 322 VESPAKFPPRTFAQHI 337
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=1.2e-43  Score=288.05  Aligned_cols=142  Identities=31%  Similarity=0.567  Sum_probs=129.5

Q ss_pred             CceeeEeeecCCCCCCCCcccccCcCCCCccEEEEcCC--CCeeEEecCCCceEEeec------cchhhhHhhhcCCeee
Q 037473            4 GMQVMAVNCYPPCPQPDIAFGLPPHSDYSCLTIVLQSS--EGLEFLGKEDESWRKVPN------VHVGDHLEVLSNGIYK   75 (150)
Q Consensus         4 ~~~~lr~~~Ypp~~~~~~~~g~~~HtD~~~lTll~q~~--~GLqv~~~~~g~W~~v~p------vn~Gd~le~~Tng~~k   75 (150)
                      ..+.+|++|||||+.++...|+++|||+|+||||+|++  +|||++.  +|+|++|+|      ||+||+||+||||+|+
T Consensus       152 ~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~--~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~k  229 (307)
T d1w9ya1         152 PNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK--DGQWIDVPPMRHSIVVNLGDQLEVITNGKYK  229 (307)
T ss_dssp             CEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEE--TTEEEECCCCTTCEEEEECHHHHHHTTTSSC
T ss_pred             ccccceecCCCCCcccccccccccccccceeEEeeccCCCCeEEEec--CCcEEEeccCCCeEEEEcchhhHHhhCCccc
Confidence            46789999999999999899999999999999999975  8999987  899999999      9999999999999999


Q ss_pred             ecccccccCCCCceeEEeEecccccCCceeEEecCccc------CCCCCCCcccHHHHHHHHHhcCcCCCcccccccccc
Q 037473           76 SVVHRATLNHERTRISITSLHSLHSLGVYVKMETAKEL------QHPKGYKESSFMDFLNFLSKNDIAGGKNFTNTLKIV  149 (150)
Q Consensus        76 s~~HRV~~~~~~~R~S~~~F~~~~~p~~d~~i~p~~~~------~~p~~y~~~~~~e~~~~~~~~~~~~~~~~l~~~~~~  149 (150)
                      |+.|||+.+++++||||+||   +.|+.|++|+|++++      ++|++|+|+|++||++.+++.++++++.+|+.+|..
T Consensus       230 St~HRVv~~~~~~R~Si~~F---~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~~~~~~~~~~~~~~~~~  306 (307)
T d1w9ya1         230 SVMHRVIAQKDGARMSLASF---YNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMKAM  306 (307)
T ss_dssp             CCCEEECCCSSSCCEEEEEE---EECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTTTTCSSHHHHHHHHHHC
T ss_pred             CcCceeecCCCCCcEEEEEE---eeCCCCCEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHhccCCcccHHHHHhhcc
Confidence            99999999988999999999   999999999999987      468899999999999999999999866679988864


Q ss_pred             C
Q 037473          150 K  150 (150)
Q Consensus       150 ~  150 (150)
                      |
T Consensus       307 ~  307 (307)
T d1w9ya1         307 E  307 (307)
T ss_dssp             -
T ss_pred             C
Confidence            4
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure