Citrus Sinensis ID: 037512

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MTKQTFLSFSLVLLFLLHCTNTLVAQPAAAPAQPAGPIAAPSPPSPPAPLVLPGPAAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDSAAANVDGDSSDDDDHKVNVSGAVSLVAMQHVVFFAAAVVAAMFSL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccccEEEEccccHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEcccEEEEEcccEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccHHHHHHHHHccccccEEEEccccHHHHHccccccccccHHHHHHHHHHHccccEccHHHcccccccccEEccccccccEEEEEEEcccEEEEEccEEEEEEEEEEEccccEEEEEEccEEccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTKQTFLSFSLVLLFLLHCTNTlvaqpaaapaqpagpiaapsppsppaplvlpgpaagpapsgptnvTKIFEKAGHFSLLIRLLKSTSVADQIEKQLndtsngvtifapaddafsslssgtlnslndgekesLMQFHVLStyiplsqfqtvsnplrtnagdsskyafplnvtsypnsvnistgitnaslsgtvytdgqLAIYQVNKVLlpwnlfgakppapapspvkpgkqdsaaanvdgdssddddhkvnVSGAVSLVAMQHVVFFAAAVVAAMFSL
Flexible Loop (DISEMBL)
MTKQTFLSFSLVLLFLLHCTNTLVAQPAAAPAQPAGPIAAPSPPSPPAPLVLPGPAAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDSAAANVDGDSSDDDDHKVNVSGAVSLVAMQHVVFFAAAVVAAMFSL
Low Complexity Region (SEG)
MTKQTflsfslvllfllHCTNTLvaqpaaapaqpagpiaapsppsppaplvlpgpaagpapsgpTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFsslssgtlnslnDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGakppapapspvkpgkQdsaaanvdgdssddddHKVNVSGAVSLVAMQHvvffaaavvaaMFSL
Disordered region (IsUnstruct)
****TFLSFSLVLLFLLHCTNTLVA*****************************************VTKIFEKAGHFSLLIRLLKSTSVADQIEK*L****NGVTIFA************************LMQFHVLSTYIPLSQFQTVSNPLR******SKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFG************************************VSGAVSLVAMQHVVFFAAAVVAAMF**
Disordered Region (DISOPRED)
*****FL*FSLVLLFLLHCTNTL*******************************************VTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPW**********************************************LVAMQHVVFFAAAVVAAMFSL
Disordered Region (DISEMBL)
MTKQTFLSFSLVLLFLLHCTNTLVAQP******************PPAPLVLPGPAAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPP****************************HKVNVSGAVSLVAMQHVVFFAAAVVAAMFSL
Disordered Region (DISPRO)
**KQTFLSFSLVLLFLLHCTNTLVAQ*******************PPA**************GPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAK***********************************SGAVSLVAMQHVVFFAAAVVAAMFSL
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKQTFLSFSLVLLFLLHCTNTLVAQPAAAPAQPAGPIAAPSPPSPPAPLVLPGPAAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDSAAANVDGDSSDDDDHKVNVSGAVSLVAMQHVVFFAAAVVAAMFSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
Q8LEJ6	246	Fasciclin-like arabinogal	yes	no	0.629	0.711	0.610	1e-54
Q8LEE9	249	Fasciclin-like arabinogal	no	no	0.539	0.602	0.613	8e-50
Q9SIL7	247	Fasciclin-like arabinogal	no	no	0.794	0.894	0.367	9e-29
Q9FFH6	247	Fasciclin-like arabinogal	no	no	0.622	0.700	0.401	2e-28
Q9ZWA8	247	Fasciclin-like arabinogal	no	no	0.705	0.793	0.354	3e-28
Q9LZX4	422	Fasciclin-like arabinogal	no	no	0.625	0.412	0.346	3e-18
Q9SJ81	254	Fasciclin-like arabinogal	no	no	0.525	0.574	0.355	9e-18
O22126	420	Fasciclin-like arabinogal	no	no	0.622	0.411	0.326	4e-15
Q9SNC3	420	Fasciclin-like arabinogal	no	no	0.582	0.385	0.315	1e-13
Q9SU13	403	Fasciclin-like arabinogal	no	no	0.712	0.491	0.294	3e-08

>sp|Q8LEJ6|FLA11_ARATH Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2

 Score =  213 bits (541), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 135/177 (76%), Gaps = 2/177 (1%)

Query: 54  GPAAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTS-NGVTIFAPADD 112
           G A  P PSGPTN+T I EKAG F+L IRLLKST  +DQI  QLN +S NG+T+FAP D+
Sbjct: 24  GQAPAPGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDN 83

Query: 113 AFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVT 172
           AF+SL SGTLNSL+D +K  L+QFHVL T I + QFQTVSNPLRT AGD     FPLN+T
Sbjct: 84  AFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNIT 143

Query: 173 SYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPG 229
           S  N VNI+TG+ +A+++ +VY+D QLA+YQV++VLLP  +FG+   APAP+P K G
Sbjct: 144 SSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFGSS-VAPAPAPEKGG 199

May be a cell surface adhesion protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LEE9|FLA12_ARATH Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 122/150 (81%)

Query: 65  TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNS 124
           TNVTKI EKAG F++ IRLLKST VA+Q+  QLN++ NG+TIFAP+D +F+ L +GTLNS
Sbjct: 38  TNVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNS 97

Query: 125 LNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGI 184
           L D ++  L+QFHV+ +Y+  S FQT+SNPLRT AGDS+   FPLNVT+  N+VNI++G+
Sbjct: 98  LTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGV 157

Query: 185 TNASLSGTVYTDGQLAIYQVNKVLLPWNLF 214
           TN ++SG VY+DGQLA+YQV+KVLLP  +F
Sbjct: 158 TNTTVSGNVYSDGQLAVYQVDKVLLPQQVF 187

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIL7|FLA6_ARATH Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV=2

 Score =  127 bits (319), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 125/234 (53%), Gaps = 13/234 (5%)

Query: 49  PLVLPGPAAGPAPS---GPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVT 105
           P +   P A PAP+    P N+T I E    F+ LI+LL +T V  Q+  QLN +  G+T
Sbjct: 19  PYIQSQPTA-PAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQVGFQVSVQLNSSDQGMT 77

Query: 106 IFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKY 165
           IFAP D+AF+ L  GTLNSL   ++  LM +H++  Y  LS     SNP+RT A      
Sbjct: 78  IFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLLLASNPVRTQATGQDGG 137

Query: 166 AFPLNVT--SYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAK-PPAPA 222
            F LN T  +  N VN+STG+    ++  +     LA+Y V+ VLLP  LFG K  P  A
Sbjct: 138 VFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVLLPEELFGTKTTPTGA 197

Query: 223 PSPVKPGKQDSAAANVDGDSSDDDDHKVNVSGAVSLVAMQHVVFFAAAVVAAMF 276
           P+P     + S +++     + DD+HK +   +V   ++  VV FA    + ++
Sbjct: 198 PAP-----KSSTSSSDADSPAADDEHK-SAGSSVKRTSLGIVVSFALFCCSVIY 245

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH6|FLA13_ARATH Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana GN=FLA13 PE=1 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 101/177 (57%), Gaps = 4/177 (2%)

Query: 64  PTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLN 123
           P N+T I EK G F  LIRLL +T + +QI  Q+N +S G+T+ AP D+AF +L  GTLN
Sbjct: 34  PINITAILEKGGQFVTLIRLLNTTQIGNQINIQINSSSEGMTVLAPTDNAFQNLKPGTLN 93

Query: 124 SLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNA-GDSSKYAFPLNVTSYPNSVNIST 182
            L+  ++  L+ +HV   +  L    +VSNP+RT A G      + LN T   N VN+ST
Sbjct: 94  KLSPDDQVKLILYHVSPKFYTLEDLLSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNVST 153

Query: 183 GITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAK---PPAPAPSPVKPGKQDSAAA 236
           G+    LS ++  +  LA+Y V+ VLLP  +FG +   P AP P    P   D + +
Sbjct: 154 GVVETRLSTSLRQERPLAVYVVDMVLLPEEMFGERKISPMAPPPKSKSPDVSDDSES 210

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA8|FLA9_ARATH Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 105/203 (51%), Gaps = 7/203 (3%)

Query: 66  NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL 125
           N+T I EK G F+  I LL  T V  Q+  Q+N +S G+T+FAP D+AF +L  GTLN L
Sbjct: 39  NLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAPTDNAFQNLKPGTLNQL 98

Query: 126 NDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGIT 185
           +  ++  L+ +HV   Y  +    +VSNP+RT A       + LN T   N +N+STG  
Sbjct: 99  SPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYV 158

Query: 186 NASLSGTVYTDGQLAIYQVNKVLLPWNLFGAK---PPAPAPSPVKPGKQDSAAANVDG-- 240
              +S ++     LA+Y V+ VLLP  +FG     P APAP     G  D + +      
Sbjct: 159 ETRISNSLRQQRPLAVYVVDMVLLPGEMFGEHKLSPIAPAPKSKSGGVTDDSGSTKKAAS 218

Query: 241 --DSSDDDDHKVNVSGAVSLVAM 261
             D S   + KV +   + L+ +
Sbjct: 219 PSDKSGSGEKKVGLGFGLGLIVL 241

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZX4|FLA10_ARATH Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 8/182 (4%)

Query: 48  APLVLPGPAAGPAPS--GPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVT 105
           AP++ PG    PAPS  G +N+T + EKAG       LL S+ V    E  +     G+T
Sbjct: 170 APIIAPGILTAPAPSSAGVSNITGLLEKAG-CKTFANLLVSSGVIKTFESTVE---KGLT 225

Query: 106 IFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKY 165
           +FAP+D+AF +     L +L   E  SL+++H L+ Y P    +T  + + T A + +  
Sbjct: 226 VFAPSDEAFKARGVPDLTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAG- 284

Query: 166 AFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFG-AKPPAPAPS 224
            + L  ++  + V + TG+  + L+ TV  +  + I+ V+ VLLP  LFG +  PAPAP 
Sbjct: 285 KYDLTTSTSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFGKSSSPAPAPE 344

Query: 225 PV 226
           PV
Sbjct: 345 PV 346

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ81|FLA7_ARATH Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 66  NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL 125
           N+T++   AG F   +  L ST V +  + Q N+T  G+TIF P DDAF +  +  L++L
Sbjct: 46  NLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNL 105

Query: 126 NDGEKESLMQFHVLSTYIPLSQFQTVSN--PLRTNAGDSSKYAFPLNVTSYPNSVNISTG 183
              + + L+ FH L  Y  LS+F+ +S   P+ T AG      + L  T    +V I + 
Sbjct: 106 TKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGGQ----YSLKFTDVSGTVRIDSL 161

Query: 184 ITNASLSGTVYTDGQLAIYQVNKVLLPWNLFG 215
            T   +S +V++   +A+YQVN+VLLP  +FG
Sbjct: 162 WTRTKVSSSVFSTDPVAVYQVNRVLLPEAIFG 193

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22126|FLA8_ARATH Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 17/190 (8%)

Query: 48  APLVLPGPAAGPAPSGP-TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTI 106
           AP++ PG    PAPS   +N+T + EKAG       LL S+ V    E  +     G+T+
Sbjct: 170 APIIAPGVLTAPAPSASLSNITGLLEKAG-CKTFANLLVSSGVLKTYESAVE---KGLTV 225

Query: 107 FAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYA 166
           FAP+D+AF +     L  L   E  SL+++H L+ Y P    +T  N + T A + +   
Sbjct: 226 FAPSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAG-K 284

Query: 167 FPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKP-------- 218
           F L  ++  + V + TG+  + L+ TV     + I+ V+ VLLP  LFG           
Sbjct: 285 FDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFGKSKSPSPAPAP 344

Query: 219 ---PAPAPSP 225
               AP PSP
Sbjct: 345 EPVTAPTPSP 354

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNC3|FLA4_ARATH Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 9/171 (5%)

Query: 59  PAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLS 118
           P P+G  N+T+I     +F++ + LL ++ V  + E   ++   G+T+F P D AFS L 
Sbjct: 201 PPPAG-INLTQILINGHNFNVALSLLVASGVITEFEN--DERGAGITVFVPTDSAFSDLP 257

Query: 119 SGT-LNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYA--FPLNVTSYP 175
           S   L SL   +K  +++FHVL +Y  L   ++++NP++         A  + LN++   
Sbjct: 258 SNVNLQSLPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLATEEMGAGSYTLNISRVN 317

Query: 176 NS-VNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLF--GAKPPAPAP 223
            S V I++G+  A ++ T +    ++++ V+KVLLP  LF    +P A AP
Sbjct: 318 GSIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELFPKSGQPVATAP 368

May be a cell surface adhesion protein that is required for normal cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU13|FLA2_ARATH Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 19/217 (8%)

Query: 51  VLPGPAAGPAPSGPTNV--TKIFEKAGH--FSLLIRLLKSTSVADQIEKQLNDTSNG-VT 105
           VL  P A    + P+++  T I EK G   FS    +LKST      +K   DT +G +T
Sbjct: 173 VLTSPEAEAPTASPSDLILTTILEKQGCKAFS---DILKSTGA----DKTFQDTVDGGLT 225

Query: 106 IFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKY 165
           +F P+D A          SL+   K +L+ +H +  Y  L   ++ +  + T A + +  
Sbjct: 226 VFCPSDSAVGKFMP-KFKSLSPANKTALVLYHGMPVYQSLQMLRSGNGAVNTLATEGNN- 283

Query: 166 AFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSP 225
            F   V +    V + T +  A + GT+     L +Y+++KVLLP  ++ A   +     
Sbjct: 284 KFDFTVQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIYKAVKTSAPAPK 343

Query: 226 VKPGKQDSAAANVDGDSSD---DDDHKV--NVSGAVS 257
               K  +A A+ DG S+D   DDD +V  + +GAVS
Sbjct: 344 SSKKKPKNAEADADGPSADAPSDDDVEVADDKNGAVS 380

May be a cell surface adhesion protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
150416579	243	arabinogalactan protein 2 [Gossypium hir	0.852	0.975	0.487	1e-57
157273644	239	fasciclin-like arabinogalactan protein 5	0.841	0.979	0.459	3e-55
47717907	235	fasciclin-like AGP 2 [Populus tremula x	0.600	0.710	0.644	1e-54
224122602	240	predicted protein [Populus trichocarpa]	0.863	1.0	0.525	2e-54
225435279	244	PREDICTED: fasciclin-like arabinogalacta	0.597	0.680	0.602	5e-54
150416577	239	arabinogalactan protein 4 [Gossypium hir	0.748	0.870	0.508	8e-54
47717925	238	fasciclin-like AGP 11 [Populus tremula x	0.733	0.857	0.535	1e-53
109150112	252	putative cell surface adhesion protein [	0.780	0.861	0.535	1e-53
30841338	243	arabinogalactan protein [Gossypium hirsu	0.550	0.629	0.660	1e-53
47717911	266	fasciclin-like AGP 4 [Populus tremula x	0.884	0.924	0.509	3e-53

>gi|150416579|gb|ABR68797.1| arabinogalactan protein 2 [Gossypium hirsutum] gi|157273636|gb|ABV27472.1| fasciclin-like arabinogalactan protein 1 [Gossypium hirsutum]

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/273 (48%), Positives = 172/273 (63%), Gaps = 36/273 (13%)

Query: 6   FLSFSLVLLFLLHCTNTLVAQPAAAPAQPAGPIAAPSPPSPPAPLVLPGPAAGPAPSGPT 65
           F + +L++LF L C+ TL   PA APA                            PSGPT
Sbjct: 7   FTTLTLLILFSLSCSTTLAQSPALAPA----------------------------PSGPT 38

Query: 66  NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL 125
           NVTKI EKAG F+L IRLLKST VA+Q+  QLN+++NG+T+FAP D+AFSSL SGTLNSL
Sbjct: 39  NVTKILEKAGQFTLFIRLLKSTQVANQLLGQLNNSNNGMTVFAPTDNAFSSLKSGTLNSL 98

Query: 126 NDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGIT 185
            D +K  L+QFH++ TY+  SQFQT+SNPLRT AGDS    FPLNVT+  NSVNI+TG+T
Sbjct: 99  TDEQKVQLVQFHIVPTYLTSSQFQTISNPLRTQAGDSGDGKFPLNVTTSGNSVNITTGLT 158

Query: 186 NASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDSAAANVDGDSSDD 245
           N S+SGT+YTDGQLA+YQ+++VL P  +F  +PPAPAP+P K   + +       D +  
Sbjct: 159 NTSVSGTIYTDGQLAVYQIDQVLQPLQIFAPRPPAPAPAPAKSKNKKATTVADSPDVTPA 218

Query: 246 DDHKVNVSGAVSLVAMQHVVFFAAAVVAAMFSL 278
           D+ K           +Q+V  F  A +    SL
Sbjct: 219 DNSKA--------ATLQNVGLFGVAALVIALSL 243

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157273644|gb|ABV27476.1| fasciclin-like arabinogalactan protein 5 [Gossypium hirsutum]

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 169/281 (60%), Gaps = 47/281 (16%)

Query: 1   MTKQTFL---SFSLVLLFLLHCTNTLVAQPAAAPAQPAGPIAAPSPPSPPAPLVLPGPAA 57
           +TKQ  +   + S +L F LHC+ T     A APAQ                        
Sbjct: 3   ITKQHLIPLFAISFLLFFQLHCSTT----SAQAPAQ------------------------ 34

Query: 58  GPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSL 117
            PAP GP +VTKI +KAG +S+ +RLLKST V+D++  +L DT +G TIFAP D AFS+L
Sbjct: 35  SPAPPGPPDVTKILQKAGQYSVFVRLLKSTQVSDRLIGELKDTDDGKTIFAPTDKAFSAL 94

Query: 118 SSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNS 177
            SG LNSLND ++  L+ FHV+ +YIPLSQFQTVSNP+RT AGDS    FPLNV S  N+
Sbjct: 95  KSGALNSLNDEQRVQLVLFHVIPSYIPLSQFQTVSNPMRTQAGDSGDGEFPLNVPSSGNT 154

Query: 178 VNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDSAAAN 237
           V + TG+T  S+S T+YTDGQLA+Y+V++VL P  +F A+  A AP+P    K    AA+
Sbjct: 155 VVLKTGLTKTSVSDTIYTDGQLAVYRVDQVLQPLQVFAARSSALAPAPGMSRK----AAD 210

Query: 238 VDGDSSDDDDHKVNVSGAVSLVAMQHVVFFAAAVVAAMFSL 278
           VDG S              S +AMQ++  F  +V+A   SL
Sbjct: 211 VDGKSK------------ASSLAMQNLALFVVSVIAFALSL 239

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47717907|gb|AAT37945.1| fasciclin-like AGP 2 [Populus tremula x Populus alba]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 132/169 (78%), Gaps = 2/169 (1%)

Query: 55  PAAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAF 114
           P    AP G TNVTKI EKAGHF++ IRLL+ST   + +   LND+S+GVTIFAP D AF
Sbjct: 47  PTQTAAPHGITNVTKILEKAGHFTIFIRLLRSTQEENHLFSALNDSSSGVTIFAPTDSAF 106

Query: 115 SSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSY 174
           S L SGTLN+L+DG+K  L++FHV+ T++  SQFQTVSNPL T AG  S+   PLNVTSY
Sbjct: 107 SELKSGTLNTLSDGDKSELVKFHVVPTFLSTSQFQTVSNPLGTWAGTGSR--LPLNVTSY 164

Query: 175 PNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAP 223
           PNSVNI+TG+TN SLSGTVYTD QLAIY++ KVLLP ++F +K PAPAP
Sbjct: 165 PNSVNITTGLTNTSLSGTVYTDNQLAIYKIEKVLLPKDIFASKAPAPAP 213

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122602|ref|XP_002318877.1| predicted protein [Populus trichocarpa] gi|118482997|gb|ABK93410.1| unknown [Populus trichocarpa] gi|222859550|gb|EEE97097.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/278 (52%), Positives = 180/278 (64%), Gaps = 38/278 (13%)

Query: 1   MTKQTFLSFSLVLLFLLHCTNTLVAQPAAAPAQPAGPIAAPSPPSPPAPLVLPGPAAGPA 60
           M  Q  LSFSL+L FLLHC                       PP+     +   PAA P 
Sbjct: 1   MVPQFLLSFSLILSFLLHC-----------------------PPT-----LAQSPAAAPG 32

Query: 61  PSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSG 120
           P GPTNVTKI EK G FS+ IRLLK+T     +  QLN+T+N +TIFAP+D+AFSSL SG
Sbjct: 33  PPGPTNVTKILEKGGQFSVFIRLLKATQEDVTLNGQLNNTNNAITIFAPSDNAFSSLKSG 92

Query: 121 TLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNI 180
           TLNSLND EK  L+QFH++  Y+  SQFQTVSNPL T AG   +    LNVT+  NSVNI
Sbjct: 93  TLNSLNDQEKAELVQFHIIPQYLSSSQFQTVSNPLTTQAGSGGR--LELNVTTTGNSVNI 150

Query: 181 STGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDSAAANVDG 240
           +TG+TN S+SGT+YTD QLA+YQV+KVLLP ++F  KPP PAP+P KP K+  AA +   
Sbjct: 151 TTGLTNTSVSGTIYTDNQLAVYQVDKVLLPVDIFTPKPPTPAPAPEKPKKRSKAAES--P 208

Query: 241 DSSDDDDHKVNVSGAVSLVAMQHVVFFAAAVVAAMFSL 278
           D+ +D+      SGAVSL  +  VVFF   +VAA+FSL
Sbjct: 209 DAPEDN------SGAVSLTVLNDVVFFGVGIVAAIFSL 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435279|ref|XP_002285068.1| PREDICTED: fasciclin-like arabinogalactan protein 11-like [Vitis vinifera]

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 133/166 (80%)

Query: 49  PLVLPGPAAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFA 108
           P  L  P+  PAPSGPTN+T+I EKAG +++LIRL+K T VADQI  QLN+++ G+T+FA
Sbjct: 19  PATLAQPSQAPAPSGPTNITQILEKAGQYTILIRLMKGTQVADQINTQLNNSNQGLTVFA 78

Query: 109 PADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFP 168
           P D+AFS+L +GTLNSL D +K  L+QFHV+  ++ +SQFQTVSNPLRT AG+S+   FP
Sbjct: 79  PTDNAFSTLKAGTLNSLTDQQKVQLIQFHVVPNFLSISQFQTVSNPLRTQAGNSNNGEFP 138

Query: 169 LNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLF 214
           LNVT+  N VN+STGI +A+++ TVYTD QLA+YQV+KVLLP ++F
Sbjct: 139 LNVTTSGNQVNVSTGIVDATVANTVYTDNQLAVYQVDKVLLPLDIF 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150416577|gb|ABR68796.1| arabinogalactan protein 4 [Gossypium hirsutum]

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 150/224 (66%), Gaps = 16/224 (7%)

Query: 55  PAAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAF 114
           PA  PAP GP +V KI +KAG +S+ +RLLKST V+D++  +L DT +G TIFAP D AF
Sbjct: 32  PAQSPAPPGPPDVAKILQKAGQYSVFVRLLKSTQVSDRLIGELKDTDDGKTIFAPTDKAF 91

Query: 115 SSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSY 174
           S+L SG LNSLND ++  L+ FHV+  YIP SQFQTVSNP+RT AGDS    FPLNVT+ 
Sbjct: 92  SALKSGALNSLNDEQRVQLVLFHVVPDYIPFSQFQTVSNPMRTQAGDSGDGEFPLNVTTS 151

Query: 175 PNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDSA 234
            N+V + TG+   S+SGT+YTDGQLA+Y+V++VL P  +F A+  A AP+P    K    
Sbjct: 152 GNTVVLKTGLMKTSVSGTIYTDGQLAVYRVDQVLQPLQVFAARSSALAPAPGMSRK---- 207

Query: 235 AANVDGDSSDDDDHKVNVSGAVSLVAMQHVVFFAAAVVAAMFSL 278
           AA+VDG+S              S +AMQ++  F  +V+A   SL
Sbjct: 208 AADVDGNSK------------ASSLAMQNLALFVVSVIAFALSL 239

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47717925|gb|AAT37954.1| fasciclin-like AGP 11 [Populus tremula x Populus alba]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 149/211 (70%), Gaps = 7/211 (3%)

Query: 59  PAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLS 118
           PAPSGPTN+T I  KAG F+ LIRLLKST  ADQI  QLN+++ G+T+FAP D++F++L 
Sbjct: 30  PAPSGPTNITAILAKAGQFTTLIRLLKSTQEADQINTQLNNSNQGLTVFAPTDNSFANLK 89

Query: 119 SGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSV 178
           +GTLNSL+D +K  L+QFH+L  ++ +S FQTVSNPLRT AG+S+   FPLNVT+  N V
Sbjct: 90  AGTLNSLSDQQKVQLVQFHILPNFLSMSNFQTVSNPLRTQAGNSADGEFPLNVTTSGNQV 149

Query: 179 NISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDSAAANV 238
           NI+TG+  A+++ T+YTDGQL +YQV++VLLP +LFG    APAP+P KP K   A A  
Sbjct: 150 NITTGVDTATVANTIYTDGQLVVYQVDQVLLPLDLFGT---APAPAPSKPEKDVPAKA-- 204

Query: 239 DGDSSDDDDHKVNVSGAVSLVAMQHVVFFAA 269
              +   +D  V+ SGA        VV  AA
Sbjct: 205 --PAGSKEDASVDASGASIATVSFGVVLIAA 233

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109150112|emb|CAI99883.1| putative cell surface adhesion protein [Zinnia violacea]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/226 (53%), Positives = 154/226 (68%), Gaps = 9/226 (3%)

Query: 56  AAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFS 115
           A  P PSGPTN+TKI EKAG F+ LIRL+K+T + DQI  QLN+++ G+T+FAP D+AFS
Sbjct: 33  APAPGPSGPTNITKILEKAGQFTTLIRLMKATQLGDQINTQLNNSNQGMTVFAPTDNAFS 92

Query: 116 SLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYP 175
           SL  GTLNSL+D +K SL+QFHV+ TY+  SQ QTVSNPLRT AGD++   FPLNVT+  
Sbjct: 93  SLKPGTLNSLSDQDKVSLLQFHVVPTYLTTSQLQTVSNPLRTQAGDTASNKFPLNVTAAG 152

Query: 176 NSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNLFGAKPPAPAPSPVKP---GKQD 232
           N VN+STG+ +  +S ++YTDG LA+YQV+KVLLP +LFG   PAPAP P+K    G +D
Sbjct: 153 NQVNVSTGVVDTPVSNSIYTDGTLAVYQVDKVLLPMSLFGTPAPAPAPEPLKKKKSGAED 212

Query: 233 SAAANVDGDSSDDDDHKVNVSGAVSLVAMQHVVFFAAAVVAAMFSL 278
            A A  DG +S D       SGAV   +  H +         M  L
Sbjct: 213 GAPAKDDGSASAD------ASGAVVFGSHWHGLSIGVVAFITMLYL 252

Source: Zinnia violacea

Species: Zinnia violacea

Genus: Zinnia

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30841338|gb|AAO92753.1| arabinogalactan protein [Gossypium hirsutum]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/153 (66%), Positives = 127/153 (83%)

Query: 62  SGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGT 121
           SGPTNVTKI EKAG F+L IRLLKST VA+Q+  QLN+++NG+T+FAP D+AFSSL SGT
Sbjct: 35  SGPTNVTKILEKAGQFTLFIRLLKSTQVANQLLGQLNNSNNGMTVFAPTDNAFSSLKSGT 94

Query: 122 LNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNIS 181
           LNSL D +K  L+QFH++ TY+  SQFQT+SNPLRT AGDS    FPLN+T+  NSVNI+
Sbjct: 95  LNSLTDEQKVELVQFHIVPTYLTSSQFQTISNPLRTQAGDSGDGKFPLNITTSGNSVNIT 154

Query: 182 TGITNASLSGTVYTDGQLAIYQVNKVLLPWNLF 214
           TG+TN S+SGT+YTDGQLA+YQ+++VL P  +F
Sbjct: 155 TGLTNTSVSGTIYTDGQLAVYQIDQVLQPLQIF 187

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47717911|gb|AAT37947.1| fasciclin-like AGP 4 [Populus tremula x Populus alba]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/263 (50%), Positives = 167/263 (63%), Gaps = 17/263 (6%)

Query: 18  HCTNTLVAQPAAAPAQPAGPIAAPSPPSPPAPLVLPGPAAGPAPSGPTNVTKIFEKAGHF 77
           HCT T      AA    A  +    PP+         P     P G TNVTKI EKAGHF
Sbjct: 19  HCTTTFAQTSPAATPAQAPAVVVAQPPAAT-------PTQAAQPHGITNVTKILEKAGHF 71

Query: 78  SLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFH 137
           ++ IRLL+ST   + +   LND+S+GVTIFAP D AFS L SGTLN+L+DG+K  L++FH
Sbjct: 72  TIFIRLLRSTQEENHLFSALNDSSSGVTIFAPTDSAFSELKSGTLNTLSDGDKSELVKFH 131

Query: 138 VLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDG 197
           V+ T++  SQFQTVSNPL T AG  ++   PLNVTSYPNSVNI+TG+TN SLSGTVYTD 
Sbjct: 132 VVPTFLSTSQFQTVSNPLGTWAGTGNR--LPLNVTSYPNSVNITTGLTNTSLSGTVYTDN 189

Query: 198 QLAIYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDSA--AANVDGDSSDDDDHKVNVSGA 255
           QLAIY++ KVLLP ++F +K PAPAP    P K   A  AA V+   +      V++SGA
Sbjct: 190 QLAIYKIEKVLLPKDIFASKAPAPAPVAPAPEKPTKAVPAATVESPVA-----PVDISGA 244

Query: 256 VSLVAMQHVVFFAAAVVAAMFSL 278
           + +     VV     V AAMF+L
Sbjct: 245 L-MFTQNQVVGSVGIVAAAMFAL 266

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2175153	249	FLA12 "FASCICLIN-like arabinog	0.539	0.602	0.566	4e-42
TAIR|locus:2143443	246	FLA11 "FASCICLIN-like arabinog	0.543	0.613	0.559	3.3e-40
TAIR|locus:2167664	247	FLA13 "AT5G44130" [Arabidopsis	0.539	0.607	0.384	4.8e-23
TAIR|locus:2024122	247	FLA9 "FASCICLIN-like arabinoog	0.539	0.607	0.36	1e-22
TAIR|locus:2054769	247	FLA6 "FASCICLIN-like arabinoga	0.535	0.603	0.392	9e-22
TAIR|locus:2049218	254	FLA7 "FASCICLIN-like arabinoog	0.525	0.574	0.348	2.2e-18
TAIR|locus:2050822	420	FLA8 "FASCICLIN-like arabinoga	0.525	0.347	0.311	7e-13
TAIR|locus:2075185	420	SOS5 "salt overly sensitive 5"	0.528	0.35	0.267	7e-13
TAIR|locus:2101841	422	FLA10 "FASCICLIN-like arabinog	0.521	0.343	0.309	1.5e-12
TAIR|locus:2162197	424	FLA1 "FASCICLIN-like arabinoga	0.517	0.339	0.275	9.7e-09

TAIR|locus:2175153 FLA12 "FASCICLIN-like arabinogalactan-protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 85/150 (56%), Positives = 113/150 (75%)

Query:    65 TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFXXXXXXXXXX 124
             TNVTKI EKAG F++ IRLLKST VA+Q+  QLN++ NG+TIFAP+D +F          
Sbjct:    38 TNVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNS 97

Query:   125 XXDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGI 184
               D ++  L+QFHV+ +Y+  S FQT+SNPLRT AGDS+   FPLNVT+  N+VNI++G+
Sbjct:    98 LTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGV 157

Query:   185 TNASLSGTVYTDGQLAIYQVNKVLLPWNLF 214
             TN ++SG VY+DGQLA+YQV+KVLLP  +F
Sbjct:   158 TNTTVSGNVYSDGQLAVYQVDKVLLPQQVF 187

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2143443 FLA11 "FASCICLIN-like arabinogalactan-protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 85/152 (55%), Positives = 108/152 (71%)

Query:    65 TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTS-NGVTIFAPADDAFXXXXXXXXX 123
             TN+T I EKAG F+L IRLLKST  +DQI  QLN +S NG+T+FAP D+AF         
Sbjct:    35 TNITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLN 94

Query:   124 XXXDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTG 183
                D +K  L+QFHVL T I + QFQTVSNPLRT AGD     FPLN+TS  N VNI+TG
Sbjct:    95 SLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTG 154

Query:   184 ITNASLSGTVYTDGQLAIYQVNKVLLPWNLFG 215
             + +A+++ +VY+D QLA+YQV++VLLP  +FG
Sbjct:   155 VVSATVANSVYSDKQLAVYQVDQVLLPLAMFG 186

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2167664 FLA13 "AT5G44130" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 58/151 (38%), Positives = 83/151 (54%)

Query:    66 NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFXXXXXXXXXXX 125
             N+T I EK G F  LIRLL +T + +QI  Q+N +S G+T+ AP D+AF           
Sbjct:    36 NITAILEKGGQFVTLIRLLNTTQIGNQINIQINSSSEGMTVLAPTDNAFQNLKPGTLNKL 95

Query:   126 XDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNA-GDSSKYAFPLNVTSYPNSVNISTGI 184
                ++  L+ +HV   +  L    +VSNP+RT A G      + LN T   N VN+STG+
Sbjct:    96 SPDDQVKLILYHVSPKFYTLEDLLSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNVSTGV 155

Query:   185 TNASLSGTVYTDGQLAIYQVNKVLLPWNLFG 215
                 LS ++  +  LA+Y V+ VLLP  +FG
Sbjct:   156 VETRLSTSLRQERPLAVYVVDMVLLPEEMFG 186

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2024122 FLA9 "FASCICLIN-like arabinoogalactan 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 54/150 (36%), Positives = 78/150 (52%)

Query:    66 NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFXXXXXXXXXXX 125
             N+T I EK G F+  I LL  T V  Q+  Q+N +S G+T+FAP D+AF           
Sbjct:    39 NLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAPTDNAFQNLKPGTLNQL 98

Query:   126 XDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGIT 185
                ++  L+ +HV   Y  +    +VSNP+RT A       + LN T   N +N+STG  
Sbjct:    99 SPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYV 158

Query:   186 NASLSGTVYTDGQLAIYQVNKVLLPWNLFG 215
                +S ++     LA+Y V+ VLLP  +FG
Sbjct:   159 ETRISNSLRQQRPLAVYVVDMVLLPGEMFG 188

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2054769 FLA6 "FASCICLIN-like arabinogalactan 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 60/153 (39%), Positives = 82/153 (53%)

Query:    66 NVTKIFEKAGH-FSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFXXXXXXXXXX 124
             N+T I E AGH F+ LI+LL +T V  Q+  QLN +  G+TIFAP D+AF          
Sbjct:    38 NLTAILE-AGHQFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNS 96

Query:   125 XXDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVT--SYPNSVNIST 182
                 ++  LM +H++  Y  LS     SNP+RT A       F LN T  +  N VN+ST
Sbjct:    97 LTYQQQIQLMLYHIIPKYYSLSDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVST 156

Query:   183 GITNASLSGTVYTDGQLAIYQVNKVLLPWNLFG 215
             G+    ++  +     LA+Y V+ VLLP  LFG
Sbjct:   157 GVVETRINNALRQQFPLAVYVVDSVLLPEELFG 189

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2049218 FLA7 "FASCICLIN-like arabinoogalactan 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 53/152 (34%), Positives = 80/152 (52%)

Query:    66 NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFXXXXXXXXXXX 125
             N+T++   AG F   +  L ST V +  + Q N+T  G+TIF P DDAF           
Sbjct:    46 NLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNL 105

Query:   126 XDGEKESLMQFHVLSTYIPLSQFQTVSN--PLRTNAGDSSKYAFPLNVTSYPNSVNISTG 183
                + + L+ FH L  Y  LS+F+ +S   P+ T AG   +Y+  L  T    +V I + 
Sbjct:   106 TKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAG--GQYS--LKFTDVSGTVRIDSL 161

Query:   184 ITNASLSGTVYTDGQLAIYQVNKVLLPWNLFG 215
              T   +S +V++   +A+YQVN+VLLP  +FG
Sbjct:   162 WTRTKVSSSVFSTDPVAVYQVNRVLLPEAIFG 193

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2050822 FLA8 "FASCICLIN-like arabinogalactan protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 7.0e-13, P = 7.0e-13
 Identities = 47/151 (31%), Positives = 74/151 (49%)

Query:    65 TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFXXXXXXXXXX 124
             +N+T + EKAG       LL S+ V    E  +     G+T+FAP+D+AF          
Sbjct:   188 SNITGLLEKAG-CKTFANLLVSSGVLKTYESAVE---KGLTVFAPSDEAFKAEGVPDLTK 243

Query:   125 XXDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGI 184
                 E  SL+++H L+ Y P    +T  N + T A + +   F L  ++  + V + TG+
Sbjct:   244 LTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAG-KFDLTTSTSGDEVILHTGV 302

Query:   185 TNASLSGTVYTDGQLAIYQVNKVLLPWNLFG 215
               + L+ TV     + I+ V+ VLLP  LFG
Sbjct:   303 APSRLADTVLDATPVVIFTVDNVLLPAELFG 333

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2075185 SOS5 "salt overly sensitive 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 7.0e-13, P = 7.0e-13
 Identities = 41/153 (26%), Positives = 81/153 (52%)

Query:    66 NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFXXXXXXXXXXX 125
             N+T+I     +F++ + LL ++ V  + E   ++   G+T+F P D AF           
Sbjct:   207 NLTQILINGHNFNVALSLLVASGVITEFEN--DERGAGITVFVPTDSAFSDLPSNVNLQS 264

Query:   126 XDGEKES-LMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYA--FPLNVTSYPNS-VNIS 181
                E+++ +++FHVL +Y  L   ++++NP++         A  + LN++    S V I+
Sbjct:   265 LPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLATEEMGAGSYTLNISRVNGSIVTIN 324

Query:   182 TGITNASLSGTVYTDGQLAIYQVNKVLLPWNLF 214
             +G+  A ++ T +    ++++ V+KVLLP  LF
Sbjct:   325 SGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELF 357

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0007155 "cell adhesion" evidence=ISS

GO:0009651 "response to salt stress" evidence=IMP

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0030247 "polysaccharide binding" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2101841 FLA10 "FASCICLIN-like arabinogalactan-protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 47/152 (30%), Positives = 76/152 (50%)

Query:    65 TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFXXXXXXXXXX 124
             +N+T + EKAG       LL S+ V    E  +     G+T+FAP+D+AF          
Sbjct:   189 SNITGLLEKAG-CKTFANLLVSSGVIKTFESTVE---KGLTVFAPSDEAFKARGVPDLTN 244

Query:   125 XXDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSS-KYAFPLNVTSYPNSVNISTG 183
                 E  SL+++H L+ Y P    +T  + + T A + + KY   L  ++  + V + TG
Sbjct:   245 LTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAGKY--DLTTSTSGDEVILHTG 302

Query:   184 ITNASLSGTVYTDGQLAIYQVNKVLLPWNLFG 215
             +  + L+ TV  +  + I+ V+ VLLP  LFG
Sbjct:   303 VGPSRLADTVVDETPVVIFTVDNVLLPAELFG 334

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2162197 FLA1 "FASCICLIN-like arabinogalactan 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 41/149 (27%), Positives = 65/149 (43%)

Query:    66 NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFXXXXXXXXXXX 125
             N+T I    G       LL +   +   ++ L     G+T+F P DDA            
Sbjct:   186 NLTGIMSAHGCKVFAETLLTNPGASKTYQESLE---GGMTVFCPGDDAMKGFLPKYKNLT 242

Query:   126 XDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGIT 185
                +KE+ + F  + TY  ++  ++ + P+ T A D +   F L V +    V + T I 
Sbjct:   243 AP-KKEAFLDFLAVPTYYSMAMLKSNNGPMNTLATDGAN-KFELTVQNDGEKVTLKTRIN 300

Query:   186 NASLSGTVYTDGQLAIYQVNKVLLPWNLF 214
                +  T+  +  LAIY  +KVLLP  LF
Sbjct:   301 TVKIVDTLIDEQPLAIYATDKVLLPKELF 329

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LEJ6	FLA11_ARATH	No assigned EC number	0.6101	0.6294	0.7113	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
pfam02469	123	pfam02469, Fasciclin, Fasciclin domain	1e-20
smart00554	97	smart00554, FAS1, Four repeated domains in the Fas	1e-12
COG2335	187	COG2335, COG2335, Secreted and surface protein con	6e-04

>gnl|CDD|217054 pfam02469, Fasciclin, Fasciclin domain

 Score = 84.2 bits (209), Expect = 1e-20
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 17/138 (12%)

Query: 75  GHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL--NDGEKES 132
             FS  + LLK+  + D     LN +    T+FAP D+AF+ L +GTLN L  +  + ++
Sbjct: 1   PGFSTFVALLKAAGLVDT----LNGSQGPFTVFAPTDEAFAKLPAGTLNFLLKDKEQLKN 56

Query: 133 LMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGT 192
           L+++HV+   +  S  +     L T  G        L V     +V     +  A +  +
Sbjct: 57  LLKYHVVPGRLTSSDLKNGGT-LATLQGS------KLRVNVTGGTVT----VNGARVVQS 105

Query: 193 VYTDGQLAIYQVNKVLLP 210
                   I+ ++KVLLP
Sbjct: 106 DIEATNGVIHVIDKVLLP 123

This extracellular domain is found repeated four times in grasshopper fasciclin I as well as in proteins from mammals, sea urchins, plants, yeast and bacteria. Length = 123

>gnl|CDD|214719 smart00554, FAS1, Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 105 TIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSK 164
           T+FAP D+AF  L    LNSL   + ++L+ +HV+   +  +        L T AG    
Sbjct: 1   TVFAPTDEAFQKLPPD-LNSLLADKLKNLLLYHVVPGRLSSADLLN-GGTLPTLAG---- 54

Query: 165 YAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPW 211
               L +T    S  ++  +  A +           ++ +++VLLP 
Sbjct: 55  --SKLRITRSGGSGTVT--VNGARIVEADIAATNGVVHVIDRVLLPP 97

Length = 97

>gnl|CDD|225214 COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 39/197 (19%), Positives = 74/197 (37%), Gaps = 27/197 (13%)

Query: 25  AQPAAAPAQPAGPIAAPSPPSPPAPLVLPGPAAGPAPSGPTNVTK-------IFEKAGHF 77
              A    +P     A +       + +P  A G   +G   V                F
Sbjct: 1   TLFALNSIEPPQREYAVNALELLRAVAVPDLANGTLETGRAAVKGNRADIVESAANNPSF 60

Query: 78  SLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL----NDGEKESL 133
           + L+  LK    A  +   LN+T    T+FAP ++AF+ L +GTL++L    N      +
Sbjct: 61  TTLVAALK----AAGLVDTLNETGP-FTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKI 115

Query: 134 MQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTV 193
           + +HV+   I  +  ++  +        +      L +      V     + +A+++   
Sbjct: 116 LTYHVVEGKITAADLKSSGS--VKTVQGA-----DLKIKVTGGGVY----VNDATVTIAD 164

Query: 194 YTDGQLAIYQVNKVLLP 210
                  I+ ++KVL+P
Sbjct: 165 INASNGVIHVIDKVLIP 181

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
COG2335	187	Secreted and surface protein containing fasciclin-	99.9
PF02469	128	Fasciclin: Fasciclin domain; InterPro: IPR000782 T	99.84
smart00554	99	FAS1 Four repeated domains in the Fasciclin I fami	99.78
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	99.02
KOG1437	682	consensus Fasciclin and related adhesion glycoprot	98.92

>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]

Probab=99.90  E-value=3.3e-24  Score=187.67  Aligned_cols=136  Identities=22%  Similarity=0.386  Sum_probs=116.3

Q ss_pred             CCcccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCCC----HHHHHhhcccc
Q 037512           62 SGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLN----DGEKESLMQFH  137 (278)
Q Consensus        62 ~~~~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L~----~~ql~~LL~yH  137 (278)
                      -...+|.+.....++|++|..+++..+|.+.|++     .|.||||||||+||++|+.++++.|.    .++|+++|.||
T Consensus        45 ~~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~-----~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYH  119 (187)
T COG2335          45 GNRADIVESAANNPSFTTLVAALKAAGLVDTLNE-----TGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYH  119 (187)
T ss_pred             cchhHHHHHHccCcchHHHHHHHHhhhhHHHhcC-----CCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEE
Confidence            4567899999899999999999999999999998     89999999999999999999988764    46999999999


Q ss_pred             cccCccCcccccccCCCcccccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccCCCCC
Q 037512          138 VLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWNL  213 (278)
Q Consensus       138 Vlp~~~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP~~i  213 (278)
                      |+++.++.+++.. .+.++|+.|.      .++|...++.|.|    +++++....+..+||+||+||+||+|++.
T Consensus       120 Vv~Gk~~~~~l~~-~~~v~t~~G~------~~~i~~~~~~~~V----n~a~v~~~di~a~NgvIhvID~Vl~Pp~~  184 (187)
T COG2335         120 VVEGKITAADLKS-SGSVKTVQGA------DLKIKVTGGGVYV----NDATVTIADINASNGVIHVIDKVLIPPMD  184 (187)
T ss_pred             EEcCcccHHHhhc-cccceeecCc------eEEEEEcCCcEEE----eeeEEEeccEeccCcEEEEEeeeccCCCc
Confidence            9999999999986 5788998775      3555554555777    36777776666778999999999999875

>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues

Probab=99.84  E-value=9.7e-22  Score=158.85  Aligned_cols=125  Identities=26%  Similarity=0.422  Sum_probs=92.3

Q ss_pred             CChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCC--CHHHHHhhcccccccCccCcccccccC
Q 037512           75 GHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL--NDGEKESLMQFHVLSTYIPLSQFQTVS  152 (278)
Q Consensus        75 g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L--~~~ql~~LL~yHVlp~~~s~s~f~~~s  152 (278)
                      ++|++|.++|+.+|+.+.|++    +.+.+|||||+|+||++++.+..+.+  ..++++++|+|||+++.++.+++....
T Consensus         1 ~~~s~f~~~l~~~~l~~~l~~----~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~   76 (128)
T PF02469_consen    1 PDLSTFSRLLEQAGLADLLND----SDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGK   76 (128)
T ss_dssp             -TTHHHHHHHHHTTCHHHHGC----SSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHH
T ss_pred             CCHHHHHHHHHHcCCHHHHhc----CCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccc
Confidence            369999999999999999952    26899999999999999965444444  567999999999999999999998642


Q ss_pred             CCccc-ccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccCC
Q 037512          153 NPLRT-NAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLP  210 (278)
Q Consensus       153 npv~T-lag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP  210 (278)
                      ..++| +.|+    .+.++....++.+.|+.   +++|.......+||+||.||+||+|
T Consensus        77 ~~~~t~~~g~----~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG~ih~id~vL~P  128 (128)
T PF02469_consen   77 QTLETLLNGQ----PLRVSSSPSNGTIYVNG---KARIVKSDIEASNGVIHIIDDVLIP  128 (128)
T ss_dssp             EEEEBSSTTC----EEEEEEEGGTTEEEECC---EEEESEEEEEESSEEEEEESS-TSS
T ss_pred             ccceeccCCC----EEEEEEEecCCceEecC---ceEEEeCCEEeCCEEEEEECceECc
Confidence            35777 4443    45555553477888842   4788765446667999999999998

It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.

>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts

Probab=99.78  E-value=1.4e-19  Score=140.93  Aligned_cols=96  Identities=31%  Similarity=0.470  Sum_probs=76.3

Q ss_pred             EEEecCcHHHhcCCcccccCCCHH-HHHhhcccccccCccCcccccccCCCcccccCCCCcceEeEEEEecC--CeEEEe
Q 037512          105 TIFAPADDAFSSLSSGTLNSLNDG-EKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYP--NSVNIS  181 (278)
Q Consensus       105 TIFAPtD~AFs~L~~g~Ln~L~~~-ql~~LL~yHVlp~~~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g--~~V~i~  181 (278)
                      |||||+|+||+++..+.++.+..+ .++++|+|||++++++.+++.. ...++|+.|.      .|.++..+  +.+.+ 
T Consensus         1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~-~~~~~Tl~g~------~l~v~~~~~~~~i~i-   72 (99)
T smart00554        1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN-GGTLPTLAGS------KLRVTRSGDSGTVTV-   72 (99)
T ss_pred             CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc-CCccccCCCC------EEEEEEeCCCCeEEE-
Confidence            899999999999987656666544 8999999999999999999986 4678898754      35555544  67777 


Q ss_pred             eCcccceEeeeecccCCeEEEEeCcccCCC
Q 037512          182 TGITNASLSGTVYTDGQLAIYQVNKVLLPW  211 (278)
Q Consensus       182 tG~~~a~I~~~v~~~~ngvIy~IDkVLlP~  211 (278)
                         ++++|.......+||+||.||+||+|+
T Consensus        73 ---n~~~v~~~di~~~nGvih~Id~vL~P~   99 (99)
T smart00554       73 ---NGARIVEADIAATNGVVHVIDRVLLPP   99 (99)
T ss_pred             ---cceEEEECCEecCCeEEEEECceeCCC
Confidence               356777655555579999999999985

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=99.02  E-value=2.1e-10  Score=117.52  Aligned_cols=134  Identities=16%  Similarity=0.234  Sum_probs=99.2

Q ss_pred             CCcccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCCCHHHHHhhcccccccC
Q 037512           62 SGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLST  141 (278)
Q Consensus        62 ~~~~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L~~~ql~~LL~yHVlp~  141 (278)
                      +...+++++..++. -+++.|++.+-|+.+.|..     ++.+|+|+|+|++|+++....    .+..+.++|+||||+.
T Consensus       371 ~~~~~l~~La~e~~-~st~~rlv~elgll~~L~~-----n~e~t~~lp~n~~fd~~~~~~----~r~l~~qIL~~HII~~  440 (682)
T KOG1437|consen  371 DSLKNLMSLAREDE-ISTSMRLVAELGLLTALAP-----NDEATLLLPTNNLFDDLTPLE----SRRLAEQILYNHIIPE  440 (682)
T ss_pred             chHHHHHHHHhccc-ccHHHHHHHhccceEEEcC-----CCceEEeeehhhhccCCChhh----hHHHHHHHHHHhCcch
Confidence            34677888887765 4899999999998886665     556999999999999976532    2334789999999999


Q ss_pred             ccCcccccccCCCcccccCCCCcceEeEEEEecCCeEEE---eeCcccceEeeeecccCCeEEEEeCcccCC
Q 037512          142 YIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNI---STGITNASLSGTVYTDGQLAIYQVNKVLLP  210 (278)
Q Consensus       142 ~~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i---~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP  210 (278)
                      +.+.++..+..+.++|+.+.    ++...|.+..++.++   .-|.. +.|.......+||+||.||+||.|
T Consensus       441 ~~~~~~~y~~~~~v~t~g~~----~l~~fv~r~~~s~~~t~i~~~~~-~~Ii~aDi~~~nGvvH~id~vl~p  507 (682)
T KOG1437|consen  441 YLTSSSMYNGQTTVRTLGKN----KLLYFVYRHSVSANVTDILIGNE-ACIIEADISVKNGVVHIIDRVLDP  507 (682)
T ss_pred             hhhhhhhhcccceeeccCCe----EEEEEEecccccccceeeeccce-eeEEecccceecCceEEeeEEcCc
Confidence            99999999866688888654    344445444332222   22223 666665666678999999999999

>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.92  E-value=3.8e-09  Score=108.39  Aligned_cols=131  Identities=16%  Similarity=0.256  Sum_probs=91.0

Q ss_pred             ccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCCC-HHHHHhhcccccccCcc
Q 037512           65 TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLN-DGEKESLMQFHVLSTYI  143 (278)
Q Consensus        65 ~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L~-~~ql~~LL~yHVlp~~~  143 (278)
                      .++.+.|+++++++.|.++++..++.++++.     .+.||+|+|||+||.+...+... +. ...+.++++||+++.-+
T Consensus       508 ~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~-----~~~~t~fvPt~ka~~~~~~~~~~-~~~~~~l~~~l~yH~v~~~~  581 (682)
T KOG1437|consen  508 VSLMEDLKTDGRISGTVQGLEGVLLPEELTP-----EGNYTLFVPTNKAWQKSTKDEKS-LFHKKALQDFLKYHLVPGQS  581 (682)
T ss_pred             ccHHHHHhhccchhhhHHhhhhcCChhhhcc-----CCceEEEeecccccccCCcchhh-cchHHHHHHHHHhcccccee
Confidence            8999999999999999999999999999965     78999999999999998865433 33 57899999999998765


Q ss_pred             CcccccccCCCcccccCCCCcceEeEEEEecCCeEEEe----eCccc-ceEee-eecccCCeEEEEeCcccCCCCCC
Q 037512          144 PLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNIS----TGITN-ASLSG-TVYTDGQLAIYQVNKVLLPWNLF  214 (278)
Q Consensus       144 s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i~----tG~~~-a~I~~-~v~~~~ngvIy~IDkVLlP~~if  214 (278)
                      .   +.-.+.+..+.      + +.++..  |+.+.+.    +|.+| .++.+ ++... ||++|+||+||.|++++
T Consensus       582 ~---ls~~~~~~v~~------~-~k~s~~--~~~~~~~~~~~~~~vn~e~~~~~~i~~~-n~~~h~i~~vl~p~~l~  645 (682)
T KOG1437|consen  582 R---LSLGSSPYVMI------Q-VKLSLR--GDHLFFSLVNPRGDVNKERLVGIDIMGT-NGVVHVIDLVLKPPDLP  645 (682)
T ss_pred             e---eecccccceee------e-eeEEEe--cccEEeeeeccccceeeeeeeccceeee-cceeEEEEEEcccCcch
Confidence            4   22111121111      0 223333  3332222    23222 33333 34444 69999999999998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	2e-06
2vxp_A	132	Transforming growth factor-beta-induced protein IG	8e-06
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	1e-05
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	2e-04
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	2e-04

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1 Length = 163

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 23/180 (12%)

Query: 35  AGPIAAPSPPSPPAPLVLPGPAAGPAPSGPTNVTKIFEKAGHFSLLIRLLKSTSVADQIE 94
              +         A    P    G +      V          + L   L         +
Sbjct: 1   GDLVGPGCAEYAAANPTGPASVQGMSQ---DPVAVAASNNPELTTLTAALSG---QLNPQ 54

Query: 95  KQLNDTSNG--VTIFAPADDAFSSLSSGTLNSL--NDGEKESLMQFHVLSTYIPLSQFQT 150
             L DT N    T+FAP + AFS L + T++ L  N     S++ +HV++     +    
Sbjct: 55  VNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPAN--- 111

Query: 151 VSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLP 210
           V    +T  G        + VT   NS+     + NA +     +     +Y ++ VL+P
Sbjct: 112 VVGTRQTLQGA------SVTVTGQGNSLK----VGNADVVCGGVSTANATVYMIDSVLMP 161

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A Length = 132

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 66  NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL 125
            V  + +    FS+L+  ++S  + + +     +     T+FAP ++AF +L     + L
Sbjct: 3   TVMDVLKGDNRFSMLVAAIQSAGLTETL-----NREGVYTVFAPTNEAFRALPPRERSRL 57

Query: 126 --NDGEKESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNI 180
             +  E  +++++H+    +           L++  GD       L V+   N V++
Sbjct: 58  LGDAKELANILKYHIGDEILVSGGIGA-LVRLKSLQGD------KLEVSLKNNVVSV 107

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A Length = 137

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 21/149 (14%)

Query: 66  NVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL 125
           ++ +    AG F+ L+   ++  + D +           T+FAP D AF++L  GT+  L
Sbjct: 4   DIVETATGAGSFTTLLTAAEAAGLVDTL-----KGDGPFTVFAPTDAAFAALPEGTVEDL 58

Query: 126 NDGEK----ESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNIS 181
              E       ++ +HV+   +  S          T  G +      L      N V+IS
Sbjct: 59  LKPENKEKLTEILTYHVVPGEVMSSDLTEGMT-AETVEGGALT--VTLEGGPKVNGVSIS 115

Query: 182 TGITNASLSGTVYTDGQLAIYQVNKVLLP 210
               +AS +G         I+ ++ VL+P
Sbjct: 116 QPDVDAS-NGV--------IHVIDGVLMP 135

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 26/182 (14%), Positives = 47/182 (25%), Gaps = 25/182 (13%)

Query: 64  PTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAF----SSLSS 119
            T V    E     S   ++ K +   DQ    LN+T    T F P D  +        S
Sbjct: 158 YTTVLGKLESDPMMSDTYKMGKFSHFNDQ----LNNTQRRFTYFVPRDKGWQKTELDYPS 213

Query: 120 GTLNSLNDGEKESL---MQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPN 176
                            ++ H+  +    +    V     + +     +   L++     
Sbjct: 214 AHKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEE 273

Query: 177 SVNISTGITNASLSGTVYTDGQLA---IYQVNKVLLPWNLFGAKPPAPAPSPVKPGKQDS 233
           +                  D +     I+ ++  LL                V  G   +
Sbjct: 274 AGRYVIIWNYKK-INVYRPDVECTNGIIHVIDYPLLE----------EKDVVVAGGSAAA 322

Query: 234 AA 235
           AA
Sbjct: 323 AA 324

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1 Length = 324

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 14/162 (8%)

Query: 57  AGPAPSGPTNVTKIFE---KAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDA 113
           A  A +  T   + F+   + G       ++        +   +N  +  VTI AP+++A
Sbjct: 1   AAAADTTVTQFLQSFKENAENGALRKFYEVIMDN--GGAVLDDINSLTE-VTILAPSNEA 57

Query: 114 FSSLSSGTLNSLNDGEK-ESLMQFHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVT 172
           ++S +   +  L D  K   ++  H++   + + + +   N        +      L   
Sbjct: 58  WNSSNINNV--LRDRNKMRQILNMHIIKDRLNVDKIRQ-KNANLIAQVPTVNNNTFLYFN 114

Query: 173 SYPNSVNISTGITNASLSGTVYTDGQLA----IYQVNKVLLP 210
                 +    +    ++ TV           ++ ++ VL  
Sbjct: 115 VRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGV 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
1w7d_A	137	Fasciclin-like protein; cell adhesion; NMR {Rhodob	99.95
2vxp_A	132	Transforming growth factor-beta-induced protein IG	99.94
1nyo_A	163	Immunogenic protein MPT70; seven-stranded beta-bar	99.94
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.89
1o70_A	324	Fasciclin I, FAS I, FCN; cell adhesion, AXON guida	99.88

>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A

Probab=99.95  E-value=4.5e-29  Score=206.36  Aligned_cols=132  Identities=23%  Similarity=0.375  Sum_probs=112.9

Q ss_pred             cccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCC----CHHHHHhhcccccc
Q 037512           64 PTNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL----NDGEKESLMQFHVL  139 (278)
Q Consensus        64 ~~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L----~~~ql~~LL~yHVl  139 (278)
                      +.||+++|++.++|++|.++|+++|+.+.|++     .++||||||+|+||++++.+.++.|    +.++++++|+|||+
T Consensus         2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv   76 (137)
T 1w7d_A            2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLKG-----DGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVV   76 (137)
T ss_dssp             CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHTS-----SSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEE
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHcC-----CCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEe
Confidence            46899999999999999999999999999986     6899999999999999998888777    45789999999999


Q ss_pred             cCccCcccccccCCCcccccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccCCCC
Q 037512          140 STYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWN  212 (278)
Q Consensus       140 p~~~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP~~  212 (278)
                      +++++.++|.. ...++|+.|+      .|+|+..+| |.|    ++++|........||+||+||+||+|+.
T Consensus        77 ~~~~~~~~l~~-~~~~~tl~G~------~l~v~~~~g-v~v----n~a~v~~~di~~~NGvIHvID~VL~P~s  137 (137)
T 1w7d_A           77 PGEVMSSDLTE-GMTAETVEGG------ALTVTLEGG-PKV----NGVSISQPDVDASNGVIHVIDGVLMPGA  137 (137)
T ss_dssp             ESCCCTTTSCS-SEEEECTTSC------EEEEECTTS-CEE----TTEECSBCCCBCSSSEEEBCSSCCSSCC
T ss_pred             CcEEcHHHhcC-CCeeeccCCc------eEEEEecCC-EEE----eCcEEEECCeecCCeEEEEECeeeCCCC
Confidence            99999999986 3467888764      478888777 887    3577776555566899999999999963

>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A

Probab=99.94  E-value=1.4e-27  Score=196.35  Aligned_cols=129  Identities=19%  Similarity=0.349  Sum_probs=108.8

Q ss_pred             ccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCC--CHHHHHhhcccccccCc
Q 037512           65 TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL--NDGEKESLMQFHVLSTY  142 (278)
Q Consensus        65 ~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L--~~~ql~~LL~yHVlp~~  142 (278)
                      .+|+++|++.++|++|+++|+++|+.+.|++     .++||||||+|+||++++.+.++.|  ++++++++|+|||+++.
T Consensus         2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~   76 (132)
T 2vxp_A            2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNR-----EGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEI   76 (132)
T ss_dssp             CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHS-----SCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSC
T ss_pred             ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcC-----CCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCce
Confidence            4799999999999999999999999999987     7899999999999999998776665  57899999999999999


Q ss_pred             cCcccccccCCCcccccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccC
Q 037512          143 IPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLL  209 (278)
Q Consensus       143 ~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLl  209 (278)
                      +..+++.. ...++|+.|+      .|+|+.+|+.+.|+    +++|........||+||+||+||+
T Consensus        77 ~~~~~l~~-~~~~~tl~G~------~l~v~~~~~~v~vn----~a~v~~~di~a~NGvIHvID~VLl  132 (132)
T 2vxp_A           77 LVSGGIGA-LVRLKSLQGD------KLEVSLKNNVVSVN----KEPVAEPDIMATNGVVHVITNVLQ  132 (132)
T ss_dssp             CCSTTCSS-CEEEEBTTSS------EEEEEEETTEEEES----SCBEEEEEEEETTEEEEEESSCC-
T ss_pred             eehhhccC-CceEecCCCC------EEEEEEeCCEEEEe----ccEEEEcceecCCEEEEEECcEeC
Confidence            98888864 3467888764      47777778888883    577776544555799999999996

>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1

Probab=99.94  E-value=5.6e-28  Score=206.11  Aligned_cols=131  Identities=22%  Similarity=0.359  Sum_probs=112.2

Q ss_pred             CcccHHHHHHHCCChHHHHHHHH-----hcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCCC--HHHHHhhcc
Q 037512           63 GPTNVTKIFEKAGHFSLLIRLLK-----STSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLN--DGEKESLMQ  135 (278)
Q Consensus        63 ~~~nI~~iL~k~g~FstF~~LL~-----~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L~--~~ql~~LL~  135 (278)
                      ...+|+++|++.++|++|+++|+     .+|+.+.|++     .+ ||||||+|+||++++.++++.|.  .++++++|+
T Consensus        26 ~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~-----~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~   99 (163)
T 1nyo_A           26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNS-----GQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILT   99 (163)
T ss_dssp             HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTS-----SS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHH
T ss_pred             CCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCC-----CC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHH
Confidence            45799999999999999999999     9999999886     56 99999999999999887777664  478999999


Q ss_pred             cccccCccCcccccccCCCcccccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccCCCC
Q 037512          136 FHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWN  212 (278)
Q Consensus       136 yHVlp~~~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP~~  212 (278)
                      |||++++++.++|.   +.++|+.|.      .|+|+..++.|.|    ++++|....+...||+||+||+||+|+.
T Consensus       100 yHvv~g~~~~~~l~---g~~~Tl~G~------~l~v~~~~~~v~v----n~a~V~~~di~a~NGvIHvID~VL~P~~  163 (163)
T 1nyo_A          100 YHVVAGQTSPANVV---GTRQTLQGA------SVTVTGQGNSLKV----GNADVVCGGVSTANATVYMIDSVLMPPA  163 (163)
T ss_dssp             HTEEESCCCTTTSC---EEEECTTSS------EEEEEECSSCEEE----TTEECSSBCCCCSSEEEBCBSSCCCCCC
T ss_pred             hceECCEEcHHHhC---CccccCCCC------EEEEEEECCEEEE----eccEEEECceEcCCEEEEEECcEeCCCC
Confidence            99999999999996   578898764      4788887888888    3577776555566899999999999963

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.89  E-value=3.7e-24  Score=198.70  Aligned_cols=142  Identities=17%  Similarity=0.120  Sum_probs=114.1

Q ss_pred             ccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCC----cccccCCCH---HHHHhhcccc
Q 037512           65 TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLS----SGTLNSLND---GEKESLMQFH  137 (278)
Q Consensus        65 ~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~----~g~Ln~L~~---~ql~~LL~yH  137 (278)
                      .+|.++|++.++|++|.++++.+|+.++|+    +..++||||||+|+||+++.    .+.++.|..   ++++++|+||
T Consensus       159 ~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~----~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~yH  234 (324)
T 1o70_A          159 TTVLGKLESDPMMSDTYKMGKFSHFNDQLN----NTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERH  234 (324)
T ss_dssp             SCHHHHHHHCGGGHHHHHHTTTTTTTGGGG----CSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTT
T ss_pred             hhHHHHhhcCchHHHHHHHHHhhCHHHHhC----CCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHhc
Confidence            589999999999999999999999887765    23689999999999999984    334455543   5899999999


Q ss_pred             cccC--ccCcccccccCC-----CcccccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccCC
Q 037512          138 VLST--YIPLSQFQTVSN-----PLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLP  210 (278)
Q Consensus       138 Vlp~--~~s~s~f~~~sn-----pv~Tlag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP  210 (278)
                      |+++  +|+.++|...++     .++|+. +    .+.++++..|+.+.|+.+.++++|........||+||+||+||+|
T Consensus       235 vv~~~~~~~~~~l~~~~~~~~~~~~~Tl~-~----~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NGvIHvID~VL~P  309 (324)
T 1o70_A          235 LAISDKEYTMKDLVKFSQESGSVILPTFR-D----SLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLE  309 (324)
T ss_dssp             EEEESSCCCHHHHHHHHHHSSSEEEECSS-S----EEEEEEEEETTEEEEEETTEEEEEEEEEEEETTEEEEEESSCSCC
T ss_pred             EeCCcceEcHHHHhhhccCCCeeeeeccC-C----cEEEEEEecCCEEEEEecCceeEEEEcccccCCCeEEEeceeecC
Confidence            9998  999899976433     378886 3    467777767888988766667888765445557999999999999


Q ss_pred             CCCCC
Q 037512          211 WNLFG  215 (278)
Q Consensus       211 ~~if~  215 (278)
                      ++...
T Consensus       310 ~~~~~  314 (324)
T 1o70_A          310 EKDVV  314 (324)
T ss_dssp             TTTTC
T ss_pred             Ccccc
Confidence            98654

>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1

Probab=99.88  E-value=3.1e-23  Score=192.50  Aligned_cols=138  Identities=17%  Similarity=0.298  Sum_probs=105.2

Q ss_pred             cccHHHHHH------HCCChHHHHHHHHhcC--chHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCC--CHHHHHhh
Q 037512           64 PTNVTKIFE------KAGHFSLLIRLLKSTS--VADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSL--NDGEKESL  133 (278)
Q Consensus        64 ~~nI~~iL~------k~g~FstF~~LL~~tg--l~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L--~~~ql~~L  133 (278)
                      ..||+++|+      +.++|++|+++|+++|  +.+.|++     .++||||||+|+||.++.   +++|  +.++++++
T Consensus         5 ~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~-----~~~~TvFAPtn~Af~~~~---~~~l~~~~~~l~~i   76 (324)
T 1o70_A            5 DTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINS-----LTEVTILAPSNEAWNSSN---INNVLRDRNKMRQI   76 (324)
T ss_dssp             --------------CCHHHHHHHHHHHHHTCSHHHHHHHT-----CSSEEEEEECHHHHHHTC---THHHHTCHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcC-----CCCeEEEEEChHhhhccc---HhhhhCCHHHHHHH
Confidence            468999998      6788999999999999  9999987     789999999999998763   3333  57899999


Q ss_pred             cccccccCccCcccccccCC----CcccccCCCCcceEeEEEEec--CCeEEEeeCcccceEeeeecccCCeEEEEeCcc
Q 037512          134 MQFHVLSTYIPLSQFQTVSN----PLRTNAGDSSKYAFPLNVTSY--PNSVNISTGITNASLSGTVYTDGQLAIYQVNKV  207 (278)
Q Consensus       134 L~yHVlp~~~s~s~f~~~sn----pv~Tlag~~~~~~~~LnVt~~--g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkV  207 (278)
                      |+|||++++++.+++....+    .++|+.|+.   .+.++++.+  ++.|+++.|..+++|........||+||+||+|
T Consensus        77 L~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~---~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NGvIhvID~V  153 (324)
T 1o70_A           77 LNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNT---FLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHV  153 (324)
T ss_dssp             HHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTC---EEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSC
T ss_pred             HHhcEeCCeecHHHHhhccCCCceEEEcCCCCc---eEEEEEeecCCceEEEEcCCceeEEEEeccccccCcEEEEEchh
Confidence            99999999999999976542    788998752   256788753  346888877667888776555668999999999


Q ss_pred             cCCCC
Q 037512          208 LLPWN  212 (278)
Q Consensus       208 LlP~~  212 (278)
                      |+|+.
T Consensus       154 L~pp~  158 (324)
T 1o70_A          154 LGVPY  158 (324)
T ss_dssp             TTSCC
T ss_pred             hhhch
Confidence            99864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	278
d1o70a1	140	b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Dros	2e-11
d1o70a2	157	b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Dros	2e-09

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 17/139 (12%), Positives = 52/139 (37%), Gaps = 7/139 (5%)

Query: 75  GHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLM 134
           G       ++        +   +N  +  VTI AP+++A++S +   +   +  +   ++
Sbjct: 4   GALRKFYEVIMDN--GGAVLDDINSLTE-VTILAPSNEAWNSSNINNVLR-DRNKMRQIL 59

Query: 135 QFHVLSTYIPLSQFQTVSNPLRTNA---GDSSKYAFPLNVTSYPNSVNISTGITNASLSG 191
             H++   + + + +  +  L        +++   F +        + +  G  NA++  
Sbjct: 60  NMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQ 119

Query: 192 TVYTDGQLAIYQVNKVLLP 210
                    ++ ++ VL  
Sbjct: 120 ADVAQTNGYVHIIDHVLGV 138

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 157

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 13/155 (8%)

Query: 65  TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNS 124
           T V    E     S   ++ K +   DQ    LN+T    T F P D  +        ++
Sbjct: 1   TTVLGKLESDPMMSDTYKMGKFSHFNDQ----LNNTQRRFTYFVPRDKGWQKTELDYPSA 56

Query: 125 L-------NDGEKESLMQFHVLSTYIPLS--QFQTVSNPLRTNAGDSSKYAFPLNVTSYP 175
                        +S+++ H+  +    +       S    +    + + +  + V    
Sbjct: 57  HKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFRDSLSIRVEEEA 116

Query: 176 NSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLP 210
               I       ++           I+ ++  LL 
Sbjct: 117 GRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLE 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d1nyoa_	163	Immunogenic protein MPT70 {Mycobacterium tuberculo	99.91
d1o70a1	140	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.87
d1o70a2	157	Fasciclin I {Fruit fly (Drosophila melanogaster) [	99.86

>d1nyoa_ b.118.1.1 (A:) Immunogenic protein MPT70 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Immunogenic protein MPT70
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=1.8e-25  Score=189.49  Aligned_cols=131  Identities=23%  Similarity=0.360  Sum_probs=108.7

Q ss_pred             CcccHHHHHHHCCChHHHHHHHHh-----cCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCCC--HHHHHhhcc
Q 037512           63 GPTNVTKIFEKAGHFSLLIRLLKS-----TSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLN--DGEKESLMQ  135 (278)
Q Consensus        63 ~~~nI~~iL~k~g~FstF~~LL~~-----tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L~--~~ql~~LL~  135 (278)
                      ...+|.+.++..++|++|..+|+.     +||.+.|+      .|+||||||+|+||++|+.+.++.|.  +++++++|+
T Consensus        26 ~~~~v~~~a~~~p~lstl~~Al~a~~~~~a~L~~~L~------~gpfTvFAPtn~AF~~l~~~~~~~l~~~~~~L~~iL~   99 (163)
T d1nyoa_          26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN------SGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILT   99 (163)
T ss_dssp             HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHT------SSSEEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHH
T ss_pred             ccchHHHHHhcCCchHHHHHHHhhccccccchhHhhc------CCCeEEEEECcHHHHhcCHHHHHhhhhhHHHHHHhhh
Confidence            356799999999999999999994     78998886      37899999999999999887777664  468999999


Q ss_pred             cccccCccCcccccccCCCcccccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccCCCC
Q 037512          136 FHVLSTYIPLSQFQTVSNPLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPWN  212 (278)
Q Consensus       136 yHVlp~~~s~s~f~~~snpv~Tlag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP~~  212 (278)
                      |||+++++..+++.   +.++|+.|+      .|.|+..++.+.|    ++++|........||+||+||+||+|+.
T Consensus       100 yHVv~g~~~~~~l~---~~~~Tl~G~------~l~v~~~~~~i~v----~~a~Vv~~di~a~NGvIHvID~VLlPPa  163 (163)
T d1nyoa_         100 YHVVAGQTSPANVV---GTRQTLQGA------SVTVTGQGNSLKV----GNADVVCGGVSTANATVYMIDSVLMPPA  163 (163)
T ss_dssp             HTEEESCCCTTTSC---EEEECTTSS------EEEEEECSSCEEE----TTEECSSBCCCCSSEEEBCBSSCCCCCC
T ss_pred             hhhhhhhhhhhhhh---hhhhhccCc------ceeEEecCCEEEE----eceEEEECCeecCCcEEEEECccccCCC
Confidence            99999999999885   346888764      4777777888888    4577776555556799999999999973

>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=5.4e-23  Score=166.26  Aligned_cols=130  Identities=15%  Similarity=0.237  Sum_probs=97.5

Q ss_pred             HCCChHHHHHHHHhcC--chHHHHhhhcCCCCCeEEEecCcHHHhcCCcccccCCCHHHHHhhcccccccCccCcccccc
Q 037512           73 KAGHFSLLIRLLKSTS--VADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTLNSLNDGEKESLMQFHVLSTYIPLSQFQT  150 (278)
Q Consensus        73 k~g~FstF~~LL~~tg--l~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~Ln~L~~~ql~~LL~yHVlp~~~s~s~f~~  150 (278)
                      ++++|++|+++|+++|  +.++|++     .+++|||||+|+||.++....+. .+.++++++|+|||+++.++.+++..
T Consensus         2 ~~~~~~~f~~~i~~~g~~~~~~l~~-----~~~~TvFAPtn~Af~~~~~~~~~-~~~~~l~~~l~yHiv~~~~~~~~l~~   75 (140)
T d1o70a1           2 ENGALRKFYEVIMDNGGAVLDDINS-----LTEVTILAPSNEAWNSSNINNVL-RDRNKMRQILNMHIIKDRLNVDKIRQ   75 (140)
T ss_dssp             CHHHHHHHHHHHHHTCSHHHHHHHT-----CSSEEEEEECHHHHHHTCTHHHH-TCHHHHHHHHHHTEESSCCCHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEEECHHHHhcCChhhhc-CCHHHHHHHHHhhccCCeEEHHHHhc
Confidence            3567999999999998  4455554     57899999999999998754432 25688999999999999999999975


Q ss_pred             cC----CCcccccCCCCcceEeEEEEecC--CeEEEeeCcccceEeeeecccCCeEEEEeCcccCCC
Q 037512          151 VS----NPLRTNAGDSSKYAFPLNVTSYP--NSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLPW  211 (278)
Q Consensus       151 ~s----npv~Tlag~~~~~~~~LnVt~~g--~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP~  211 (278)
                      ..    ..+.|+.++   ..+.+++...+  ..+.+..+..+++|........||+||+||+||.|+
T Consensus        76 ~~~~~~~~~~t~~g~---~~~~~~~~~~~~~~~~~~~~~~~~a~V~~~Di~~~NGvIH~ID~VL~~P  139 (140)
T d1o70a1          76 KNANLIAQVPTVNNN---TFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGVP  139 (140)
T ss_dssp             HTSSSCCCEEBSSTT---CEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSCTTSC
T ss_pred             CcccCceEeeecCCC---ceEEEEEeccceeEEEEecCCcceEEEEeCCEecCCeEEEEECCccCCc
Confidence            32    245677665   23445665543  345555556678887765556689999999999986

>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: FAS1 domain
superfamily: FAS1 domain
family: FAS1 domain
domain: Fasciclin I
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=1.4e-22  Score=167.31  Aligned_cols=138  Identities=17%  Similarity=0.084  Sum_probs=102.3

Q ss_pred             ccHHHHHHHCCChHHHHHHHHhcCchHHHHhhhcCCCCCeEEEecCcHHHhcCCcccc----cCC---CHHHHHhhcccc
Q 037512           65 TNVTKIFEKAGHFSLLIRLLKSTSVADQIEKQLNDTSNGVTIFAPADDAFSSLSSGTL----NSL---NDGEKESLMQFH  137 (278)
Q Consensus        65 ~nI~~iL~k~g~FstF~~LL~~tgl~~~L~~qL~~s~ggiTIFAPtD~AFs~L~~g~L----n~L---~~~ql~~LL~yH  137 (278)
                      .+|.++|+.+++|+.|.++++.+|+.++|++    +.+.||||||+|+||+++.....    +.+   .+++++++|+||
T Consensus         1 ~Ti~~~l~~~p~ls~~~~~~~~s~l~~~L~~----~~~~~TvFaPtn~Af~~l~~~~~~~~~~~~~~~~~~~l~~il~~H   76 (157)
T d1o70a2           1 TTVLGKLESDPMMSDTYKMGKFSHFNDQLNN----TQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERH   76 (157)
T ss_dssp             SCHHHHHHHCGGGHHHHHHTTTTTTTGGGGC----SSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTT
T ss_pred             CcHHHHHHhCccHHHHHHHHHhCCHHHHHhC----CCCceEEEecCHHHHHHhhhhccchhhhhcCcccHHHHHHHheeE
Confidence            3789999999999999999999999888774    45789999999999999853211    122   356899999999


Q ss_pred             cccCccCccccccc-----CC--CcccccCCCCcceEeEEEEecCCeEEEeeCcccceEeeeecccCCeEEEEeCcccCC
Q 037512          138 VLSTYIPLSQFQTV-----SN--PLRTNAGDSSKYAFPLNVTSYPNSVNISTGITNASLSGTVYTDGQLAIYQVNKVLLP  210 (278)
Q Consensus       138 Vlp~~~s~s~f~~~-----sn--pv~Tlag~~~~~~~~LnVt~~g~~V~i~tG~~~a~I~~~v~~~~ngvIy~IDkVLlP  210 (278)
                      |+++..........     ..  ...|+ +    +.+.+++...++.+.+....++++|........||+||+||+||+|
T Consensus        77 iv~g~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~a~V~~~Di~a~NGviHvID~VLlp  151 (157)
T d1o70a2          77 LAISDKEYTMKDLVKFSQESGSVILPTF-R----DSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLE  151 (157)
T ss_dssp             EEEESSCCCHHHHHHHHHHSSSEEEECS-S----SEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTEEEEEESSCSCC
T ss_pred             EecccccchhhhhhhhhccCCceeEEec-C----CcEEEEEEcCCcEEEEecCCccceEEECCEecCCeEEEEECceecC
Confidence            99976554443211     11  12232 2    3467888877777777655567888775555557999999999999


Q ss_pred             C
Q 037512          211 W  211 (278)
Q Consensus       211 ~  211 (278)
                      +
T Consensus       152 ~  152 (157)
T d1o70a2         152 E  152 (157)
T ss_dssp             T
T ss_pred             C
Confidence            6