Citrus Sinensis ID: 037736

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
MANEVVLVGIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSADEKAITFDCSEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLTGTVF
cccEEEEEccccccEEEEEcccccccccccccHHHHHHHHHHHHHccccccEEEEccccEEEEEEEEEEcccccccEEEEEcEEEEcccccccccccccEEEEEEccccEEEEEcEEEEcccccccccEEEEEEEccEEEEcEEEEccccEEEEEEEEEcEEEEEEEEEccccccccccccccccccEEEEEcEEEccccEEEEccccEEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEEEEccccEEEEccccccEEcEEEEEEEEEEcccccccccEEEEEEEEEEcccccccccccccc
cccccEEccccccccEEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccEEEEEEEEcEEEEEEcEEEccccccccccEEEEEccccEEEEEEEEEEcccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEEEEEEEEEEEcccccEEEEccccccccccccccEEEEEEEEEEEEccccccccEEEEEccccccccEEEEEEEEEEccccccccccHccccccccccccccHHcccccc
MANEVVLVGigdgrntfnvvdfgaigdgktddsDAFAKAWTDFcsatgdsatleipanKAFLlksttfrgpcksnsvniqvsgtivapdskswkqcgsqcwlslydvqglsidgsgtidgngrgwwnQAVYFHNcnnlqvkgitivnspkshisintcngvsvsnihidspedspntdgidisfsTQVNildssiksgddcvainggssninitgvacgpghgisvgslgldgaddkvEEVHVRncnftgtqngariktspggsgyarriSFEHITliasknpiiidqhycvggggckgtsavnVSEVtysdvqgssadekaitfdcseegcfgikmeqvsitssvpgkettaycqnahgtststsphvgcltgtvf
MANEVVLVgigdgrntfnvVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVsgtivapdskswKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRncnftgtqngariktspggsgYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYsdvqgssadekAITFDCSEEGCFGIKMEQVSITSSVPGKETTAYCQNahgtststsphvgcltgtvf
MANEVVLVGIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSADEKAITFDCSEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLTGTVF
****VVLVGIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHI***********IDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQ*****EKAITFDCSEEGCFGIKMEQVSIT**********Y***********************
*ANEVV*VGIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISV**LG***ADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSADEKAITFDCSEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLT****
MANEVVLVGIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSADEKAITFDCSEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLTGTVF
****VVLVGIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSADEKAITFDCSEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLT****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANEVVLVGIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSADEKAITFDCSEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLTGTVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query377 2.2.26 [Sep-21-2011]
Q9LW07456 Probable polygalacturonas no no 0.970 0.802 0.471 4e-88
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.909 0.667 0.416 1e-73
O23147431 Polygalacturonase ADPG1 O no no 0.888 0.777 0.447 3e-73
P48979393 Polygalacturonase OS=Prun N/A no 0.928 0.890 0.406 3e-70
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.907 0.674 0.406 5e-69
P43212514 Polygalacturonase OS=Cryp N/A no 0.909 0.667 0.402 1e-68
Q02096462 Polygalacturonase OS=Pers N/A no 0.888 0.725 0.420 1e-68
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.899 0.772 0.407 2e-67
P35336467 Polygalacturonase OS=Acti N/A no 0.933 0.753 0.405 4e-67
Q94AJ5444 Probable polygalacturonas no no 0.941 0.799 0.36 8e-66
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function desciption
 Score =  325 bits (832), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/380 (47%), Positives = 234/380 (61%), Gaps = 14/380 (3%)

Query: 5   VVLVGIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLK 64
           +  + I    N  +V  FGA+GDG TDDS AF KAW   CS TGD     +PA   F+L+
Sbjct: 12  LFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGD-GQFVVPAGMTFMLQ 70

Query: 65  STTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRG 124
              F+G CKS  V +Q+ G +VAP   +WK    Q W+   D++GL I+G G I+G G  
Sbjct: 71  PLKFQGSCKSTPVFVQMLGKLVAPSKGNWKGDKDQ-WILFTDIEGLVIEGDGEINGQGSS 129

Query: 125 WWNQ------AVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTD 178
           WW        A+ F +CNNL++ G+T ++SP +HI I+ CN V++S++ I++PE SPNTD
Sbjct: 130 WWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTD 189

Query: 179 GIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKV 238
           GID+  S+ V I D  I +GDDC+AIN G+SNI+I+G+ CGPGHGIS+GSLG DG    V
Sbjct: 190 GIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATV 249

Query: 239 EEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVG---GG 295
           E V V+NCNF GT NGARIKT  GGSGYAR I+F  ITL   +NPIIIDQ Y  G     
Sbjct: 250 ENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNA 309

Query: 296 GCKGTSAVNVSEVTYSDVQGSSADEKAITFDCSEE-GCFGIKMEQVSI--TSSVPGKETT 352
             + +SAV VS+V +S+  G+S  E  + F CSE   C  I +  + I   SS  G+   
Sbjct: 310 KDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQ 369

Query: 353 AYCQNAHGTSTSTSPHVGCL 372
             C N  G ST   P + CL
Sbjct: 370 GQCLNVRGASTIAVPGLECL 389

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
224143124399 predicted protein [Populus trichocarpa] 0.968 0.914 0.567 1e-115
255548940395 Polygalacturonase-2 precursor, putative 0.949 0.906 0.563 1e-111
356503131472 PREDICTED: LOW QUALITY PROTEIN: probable 0.941 0.752 0.512 1e-100
356503135452 PREDICTED: probable polygalacturonase At 0.941 0.785 0.512 1e-100
356547430422 PREDICTED: probable polygalacturonase At 0.976 0.872 0.488 1e-99
224092464342 predicted protein [Populus trichocarpa] 0.880 0.970 0.589 2e-99
356555461401 PREDICTED: probable polygalacturonase At 0.986 0.927 0.491 2e-99
356503153 760 PREDICTED: uncharacterized protein LOC10 0.962 0.477 0.506 9e-99
297743439 495 unnamed protein product [Vitis vinifera] 0.962 0.733 0.493 3e-98
359482692389 PREDICTED: probable polygalacturonase At 0.952 0.922 0.5 4e-98
>gi|224143124|ref|XP_002324855.1| predicted protein [Populus trichocarpa] gi|222866289|gb|EEF03420.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/377 (56%), Positives = 270/377 (71%), Gaps = 12/377 (3%)

Query: 9   GIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFC--SATGDSATLEIPANKAFLLKST 66
           GIG G+  FNVVDFGAIGDG+ DD++AF  AW   C       + +L+IP  K FLL+  
Sbjct: 19  GIGHGQKVFNVVDFGAIGDGQIDDTNAFLSAWQALCGDDVAQGTPSLQIPEGKTFLLQPV 78

Query: 67  TFRGPCKSNSVNIQVSGTIVAPDS-KSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGW 125
            F+GPCKS  V++QV G I+AP++ + W  C +  W+    V  L++ GSG IDG G  W
Sbjct: 79  KFQGPCKSVFVHVQVQGKIIAPNTIEEWNNCQADYWIGFVGVANLNMYGSGLIDGQGSVW 138

Query: 126 WNQAVY--------FHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNT 177
           W +A+         F  C++LQ+ G+T V+SPK HI I  CNGV +SN++I +PE+SPNT
Sbjct: 139 WMRAMQANSLNALNFEKCDDLQLSGLTHVDSPKGHIGITDCNGVLISNLNIAAPENSPNT 198

Query: 178 DGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDK 237
           DGID++ ST V+I DS I +GDDCVAINGG S INIT +ACGPGHGISVGSLG DG  D 
Sbjct: 199 DGIDMARSTNVHIQDSMIATGDDCVAINGGCSYINITNIACGPGHGISVGSLGKDGQYDT 258

Query: 238 VEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGC 297
           VEEVHVRNC+FTGTQN ARIKT  GGSGYAR+IS+E ITL+ASKNPIIIDQ+YC G   C
Sbjct: 259 VEEVHVRNCSFTGTQNAARIKTWQGGSGYARKISYEQITLVASKNPIIIDQYYCDGVNNC 318

Query: 298 KGTS-AVNVSEVTYSDVQGSSADEKAITFDCSEEGCFGIKMEQVSITSSVPGKETTAYCQ 356
           + +S A+ VS+VTYS  QG+S DE+AI  DCS+ GC  I M+ ++ITS  PGK T AYC+
Sbjct: 319 RNSSTALQVSDVTYSGFQGTSVDEEAIRLDCSDRGCINIVMDNINITSLDPGKTTYAYCE 378

Query: 357 NAHGTSTSTSPHVGCLT 373
           +  GTS  T+P+V CL+
Sbjct: 379 HTSGTSWFTAPYVPCLS 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548940|ref|XP_002515526.1| Polygalacturonase-2 precursor, putative [Ricinus communis] gi|223545470|gb|EEF46975.1| Polygalacturonase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356503131|ref|XP_003520365.1| PREDICTED: LOW QUALITY PROTEIN: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information
>gi|356503135|ref|XP_003520367.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information
>gi|356547430|ref|XP_003542115.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information
>gi|224092464|ref|XP_002309621.1| predicted protein [Populus trichocarpa] gi|222855597|gb|EEE93144.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555461|ref|XP_003546050.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information
>gi|356503153|ref|XP_003520376.1| PREDICTED: uncharacterized protein LOC100782390 [Glycine max] Back     alignment and taxonomy information
>gi|297743439|emb|CBI36306.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359482692|ref|XP_002266797.2| PREDICTED: probable polygalacturonase At3g15720-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
TAIR|locus:2128023394 AT4G35670 [Arabidopsis thalian 0.938 0.898 0.529 6.6e-97
TAIR|locus:2146370458 AT5G27530 [Arabidopsis thalian 0.938 0.772 0.516 2.7e-91
TAIR|locus:2155292381 AT5G44840 [Arabidopsis thalian 0.936 0.926 0.487 1.4e-87
TAIR|locus:2093212456 AT3G15720 [Arabidopsis thalian 0.944 0.780 0.483 2e-86
TAIR|locus:504955462 486 AT4G32375 [Arabidopsis thalian 0.893 0.693 0.464 5.2e-81
TAIR|locus:2156314332 AT5G44830 [Arabidopsis thalian 0.864 0.981 0.490 1.4e-80
TAIR|locus:2167185421 AT5G17200 [Arabidopsis thalian 0.795 0.712 0.498 7.9e-78
TAIR|locus:2127821342 AT4G32370 [Arabidopsis thalian 0.740 0.815 0.486 3.8e-69
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.925 0.885 0.403 8e-69
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.941 0.758 0.398 1.7e-68
TAIR|locus:2128023 AT4G35670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 195/368 (52%), Positives = 250/368 (67%)

Query:     9 GIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTF 68
             GI  G+N +NV++F A GDG+TDDS+AF +AWT  C   GD  TL IP+ K FLL+ T F
Sbjct:    17 GIVYGKN-YNVLNFDAKGDGQTDDSEAFLQAWTAACGGDGDIKTLLIPSGKTFLLQPTVF 75

Query:    69 RGPCKSNSVNIQVSGTIVAPDSK-SWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWN 127
             +GPCKS+S+ +Q+ GTIVAP  K +W    S+ W+    V GL I GSGTID  G  +W 
Sbjct:    76 QGPCKSSSIKVQLDGTIVAPSDKFAWSDPISRMWIKFSTVSGLIIVGSGTIDSRGSSFWE 135

Query:   128 ---------QAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTD 178
                       A++   C+NL++ GIT ++SPK+HISI TCN V++SNI++ +PE SPNTD
Sbjct:   136 LNLKASQRPTALHISKCDNLRINGITSIDSPKNHISIKTCNTVAISNINLFAPETSPNTD 195

Query:   179 GIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKV 238
             GIDIS ST +NI DS+I++GDDC+AIN GSSNINITG+ CGPGHGISVGSLG  GA+ KV
Sbjct:   196 GIDISDSTNINIFDSTIQTGDDCIAINSGSSNINITGINCGPGHGISVGSLGAGGAEAKV 255

Query:   239 EEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCK 298
              +V V +C F  T NGARIKT  GG GYAR ISF  ITL+ +KNPIIIDQHY +  G   
Sbjct:   256 SDVQVTHCTFNQTTNGARIKTWLGGQGYARNISFTDITLVNTKNPIIIDQHY-IDKGRLT 314

Query:   299 GTSAVNVSEVTYSDVQGSSADEKAITFDCSEEG-CFGIKMEQVSITSSVPGKETTAYCQN 357
               SAV +S V + D +G+S+++ AIT  CSE   C  + M+ + IT +  GK     CQ 
Sbjct:   315 EESAVAISNVKFVDFRGTSSNKNAITLKCSETTHCVDVVMDGIDITMANGGKPKVN-CQY 373

Query:   358 AHGTSTST 365
               G S+ T
Sbjct:   374 VDGESSDT 381
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2146370 AT5G27530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155292 AT5G44840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093212 AT3G15720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955462 AT4G32375 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156314 AT5G44830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167185 AT5G17200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127821 AT4G32370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.15LOW CONFIDENCE prediction!
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVIII.1568.1
hypothetical protein (357 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.X.3259.1
pectinesterase family protein (EC-3.1.1.11) (555 aa)
  •  •  0.915
gw1.4829.2.1
annotation not avaliable (318 aa)
  •  • •0.904
gw1.XVII.937.1
hypothetical protein (445 aa)
     •  0.899
gw1.XIV.2235.1
hypothetical protein (287 aa)
     •  0.899
gw1.XIII.724.1
pectinesterase family protein (EC-3.1.1.11) (512 aa)
     •  0.899
gw1.XI.2918.1
hypothetical protein (368 aa)
     •  0.899
gw1.XI.1374.1
hypothetical protein (348 aa)
     •  0.899
gw1.X.2863.1
hypothetical protein (378 aa)
     •  0.899
gw1.VIII.2762.1
hypothetical protein (429 aa)
     •  0.899
gw1.IV.576.1
pectinesterase family protein (EC-3.1.1.11) (315 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
PLN03010409 PLN03010, PLN03010, polygalacturonase 1e-125
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 1e-105
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-97
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 3e-87
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 6e-81
PLN02155394 PLN02155, PLN02155, polygalacturonase 2e-76
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 3e-75
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 1e-26
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 3e-05
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information 
 Score =  367 bits (943), Expect = e-125
 Identities = 194/361 (53%), Positives = 252/361 (69%), Gaps = 8/361 (2%)

Query: 9   GIGDGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTF 68
           G+ +G+N +NV+ FGA GDG+TDDS+AF +AW   C   G+  TL IP+ K +LL+   F
Sbjct: 40  GLVNGQN-YNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEF 98

Query: 69  RGPCKSNSVNIQVSGTIVAP-DSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWN 127
           +GPCKS S+ +Q+ G IVAP +  +W    SQ W+S   V GL IDGSGTIDG G  +W 
Sbjct: 99  KGPCKSTSIKVQLDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFW- 157

Query: 128 QAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQ 187
           +A++   C+NL + GIT ++SPK+HISI TCN V++S I+I +PE SPNTDGIDIS+ST 
Sbjct: 158 EALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTN 217

Query: 188 VNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNCN 247
           +NI DS+I++GDDC+AIN GSSNINIT + CGPGHGISVGSLG DGA+ KV +VHV +C 
Sbjct: 218 INIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCT 277

Query: 248 FTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGT--SAVNV 305
           F  T NGARIKT  GG GYAR ISFE+ITLI +KNPIIIDQ Y +  G    T  SAV +
Sbjct: 278 FNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQY-IDKGKLDATKDSAVAI 336

Query: 306 SEVTYSDVQGSSADEKAITFDCSE-EGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTS 364
           S V Y   +G++++E AIT  CS    C  + M+ + +T    G++    CQN  G S+ 
Sbjct: 337 SNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTME-NGEKPKVECQNVEGESSD 395

Query: 365 T 365
           T
Sbjct: 396 T 396

Length = 409
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 377
PLN02793443 Probable polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.94
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.9
PLN02793443 Probable polygalacturonase 99.9
PLN02218431 polygalacturonase ADPG 99.88
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.88
PLN02155394 polygalacturonase 99.88
PLN03003456 Probable polygalacturonase At3g15720 99.88
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.87
PLN03010409 polygalacturonase 99.86
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.79
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.73
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.36
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.3
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 99.19
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 99.03
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.82
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.8
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.77
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.76
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.67
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.65
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.6
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.51
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.5
smart00656190 Amb_all Amb_all domain. 98.46
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.45
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.4
PLN02773317 pectinesterase 98.36
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.3
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.17
PLN02480343 Probable pectinesterase 98.14
smart00656190 Amb_all Amb_all domain. 98.1
PLN02665366 pectinesterase family protein 97.95
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.91
PLN02682369 pectinesterase family protein 97.9
PLN02176340 putative pectinesterase 97.88
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.87
PRK10531422 acyl-CoA thioesterase; Provisional 97.86
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.85
PLN02432293 putative pectinesterase 97.85
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.83
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.8
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.8
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.77
PLN02304379 probable pectinesterase 97.75
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.72
PLN02497331 probable pectinesterase 97.72
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.71
PLN02916502 pectinesterase family protein 97.71
PLN02301548 pectinesterase/pectinesterase inhibitor 97.7
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.69
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.69
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.67
PLN02634359 probable pectinesterase 97.67
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.6
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.58
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.56
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.55
PLN02671359 pectinesterase 97.51
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.51
PLN02314586 pectinesterase 97.51
PLN02197588 pectinesterase 97.47
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.44
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.39
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.3
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.21
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 97.05
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.93
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 96.2
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.89
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.28
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 95.14
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.01
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.89
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.44
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 93.34
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 92.47
PLN02665366 pectinesterase family protein 92.1
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 91.34
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 89.51
PLN02634359 probable pectinesterase 89.01
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 88.99
PLN02197588 pectinesterase 88.02
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 87.43
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 86.02
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=4.3e-73  Score=550.52  Aligned_cols=357  Identities=42%  Similarity=0.797  Sum_probs=329.8

Q ss_pred             CceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCC-CC
Q 037736           14 RNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDS-KS   92 (377)
Q Consensus        14 ~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~-~~   92 (377)
                      ++++||+||||+|||++|||+|||+||++||+ ..+|++|+||+|++|++++|.|.||||| +++|+++|+|+++.+ ..
T Consensus        50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~-~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~  127 (443)
T PLN02793         50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS-SKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDV  127 (443)
T ss_pred             ceEEEhhhcccCCCCCCccHHHHHHHHHHHhc-cCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHH
Confidence            57999999999999999999999999987888 6689999999996599999999999999 999999999999998 88


Q ss_pred             cCCCCceecEEEeeeeceEEEeccEEeCCCcccccc---------------cEEEEeecceEEEeeEEeCCCceeEEEeC
Q 037736           93 WKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQ---------------AVYFHNCNNLQVKGITIVNSPKSHISINT  157 (377)
Q Consensus        93 ~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~---------------~i~~~~~~nv~i~~~~i~~~~~~~i~~~~  157 (377)
                      |+......|+.+.+.+|++|.|.|+|||+|+.||..               ++.|.+|+|++|++++++++|.|++++..
T Consensus       128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~  207 (443)
T PLN02793        128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTN  207 (443)
T ss_pred             ccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEc
Confidence            986555679999999999999999999999999942               68999999999999999999999999999


Q ss_pred             eecEEEEEEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCC
Q 037736          158 CNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDK  237 (377)
Q Consensus       158 ~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~  237 (377)
                      |++++|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|.++||++|||++++...+.
T Consensus       208 ~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~  287 (443)
T PLN02793        208 CRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSE  287 (443)
T ss_pred             cCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCc
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999987666788


Q ss_pred             EEEEEEEceEEeCCceeEEEEecCCCCceEEeEEEEeEEEeccCccEEEEeeecCCCCCCC-CCcceEEEeEEEEeEEEe
Q 037736          238 VEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCK-GTSAVNVSEVTYSDVQGS  316 (377)
Q Consensus       238 i~ni~i~n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~ni~f~ni~~~  316 (377)
                      ++||+|+||++.++.+|++||+|.++.|.++||+|+|++|+++.+||.|++.|++....|+ +...+.|+||+|+||+++
T Consensus       288 V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt  367 (443)
T PLN02793        288 VRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGT  367 (443)
T ss_pred             EEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEE
Confidence            9999999999999999999999999899999999999999999999999999976544454 456789999999999999


Q ss_pred             eCCcceEEEec-CCCceecEEEEeEEEEecCCCCccceeeecccccccccccCCCCCC
Q 037736          317 SADEKAITFDC-SEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTSTSTSPHVGCLT  373 (377)
Q Consensus       317 ~~~~~~~~i~~-~~~~i~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  373 (377)
                      ...+.++.+.| ++.||+||+|+||++.... +......|.++++...+..+||+|+.
T Consensus       368 ~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~-g~~~~~~C~n~~g~~~~~~~p~~C~~  424 (443)
T PLN02793        368 SATEEAIKFACSDSSPCEGLYLEDVQLLSST-GDFTESFCWEAYGSSSGQVYPPPCFS  424 (443)
T ss_pred             EcccccEEEEeCCCCCEeeEEEEeeEEEecC-CCCCCcEEEccEEeECCeEcCCcccc
Confidence            76667899999 9999999999999999776 33557899999999999999999973

>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 2e-24
1nhc_A336 Structural Insights Into The Processivity Of Endopo 2e-22
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-19
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 1e-18
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-17
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 4e-17
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 4e-14
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-12
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 2e-09
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 133/258 (51%), Gaps = 23/258 (8%)
Query: 117 TIDGNGRGWWN-----------QAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSN 165
           +ID  G  WW+           +  Y H+  +  +KG+ ++N+P    SIN+   + V +
Sbjct: 79  SIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYD 138
Query: 166 IHID-SPEDSP---NTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPG 221
           + ID S  DS    NTD  D+  ST V I  +++K+ DDC+AIN G +NI  TG  C  G
Sbjct: 139 VIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSG-TNITFTGGTCSGG 197
Query: 222 HGISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARIKTSPGGSGYARRISFEHITLI-AS 280
           HG+S+GS+G   +D+ V+ V + N     + NG RIKT  G +G    +++  ITL   +
Sbjct: 198 HGLSIGSVG-GRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIA 256
Query: 281 KNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSADEKA-ITFDCSEEGCFGIKMEQ 339
           K  I+I+Q Y  G      T+ V ++ +T S + GS A     +   C+   C   K   
Sbjct: 257 KYGIVIEQDYENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSG 316
Query: 340 VSITSSVPGKETTAYCQN 357
           VS+T    GK++T  C N
Sbjct: 317 VSVTG---GKKSTK-CSN 330
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-110
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 2e-99
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 8e-98
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 3e-89
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 4e-86
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 5e-86
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 9e-86
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 4e-82
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 1e-79
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 7e-75
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-26
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 5e-26
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 6e-24
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 3e-21
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 4e-20
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 7e-09
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 1e-08
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 6e-06
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 2e-05
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  327 bits (840), Expect = e-110
 Identities = 81/374 (21%), Positives = 147/374 (39%), Gaps = 29/374 (7%)

Query: 13  GRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPC 72
              T N++ +GA+ D  TD   A   AW   C + G    + IP+    L    T  G  
Sbjct: 17  ATKTCNILSYGAVADNSTDVGPAITSAWAA-CKSGG---LVYIPSGNYALNTWVTLTGGS 72

Query: 73  KSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQ---- 128
                 IQ+ G I    + S             D +  S    G + G G  +  +    
Sbjct: 73  A---TAIQLDGIIYRTGTASGNMIA---VTDTTDFELFSSTSKGAVQGFGYVYHAEGTYG 126

Query: 129 --AVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFST 186
              +   +  +  V  I +V++P  H +++TC+   V N+ I    +    DGID+   +
Sbjct: 127 ARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVW-GS 184

Query: 187 QVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNC 246
            + + D  + + D+CV +   ++NI +  + C    G ++GSLG D     V ++  RN 
Sbjct: 185 NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNV 241

Query: 247 NFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVS 306
               +     IK+  GGSG    +  E+     +   + ID ++            V ++
Sbjct: 242 YTWSSNQMYMIKS-NGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA--GDGVQLN 298

Query: 307 EVTYSDVQGSS---ADEKAITFDCSEEG-CFGIKMEQVSITSSVPGKETTAYCQNAHGTS 362
            +T  + +G+    A    I   CS+   C  + +E ++I +   G      C++A+G+ 
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTE-SGSSELYLCRSAYGSG 357

Query: 363 TSTSPHVGCLTGTV 376
                     + T 
Sbjct: 358 YCLKDSSSHTSYTT 371
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.94
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.92
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.91
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.89
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.88
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.88
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.88
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.87
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.86
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.84
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.83
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.81
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.8
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.63
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.56
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.53
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.5
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.44
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.44
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.32
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.18
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.93
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.81
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.68
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.63
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.6
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.59
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.56
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.55
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.54
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.53
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.52
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.44
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.43
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.41
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.37
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.35
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.31
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.31
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.3
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.29
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.24
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.21
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.01
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.85
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.83
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.82
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.74
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.72
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.69
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.53
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.45
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.41
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.75
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.61
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.16
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.93
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.9
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.49
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.7
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 94.35
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 89.9
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 89.57
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 88.78
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 81.81
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=5.6e-61  Score=469.40  Aligned_cols=316  Identities=28%  Similarity=0.427  Sum_probs=285.4

Q ss_pred             CCCceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEeeeeeeeCCCCCcceEEEEEEEEEcCCC-
Q 037736           12 DGRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPCKSNSVNIQVSGTIVAPDS-   90 (377)
Q Consensus        12 ~~~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~~l~l~~~~~s~~v~l~~~G~i~~~~~-   90 (377)
                      -+++.++|+||||+|||++|||+|||+||++ |. +.++++|+||+| +|++++|.|    +| +++|+++|+|+++.+ 
T Consensus        23 ~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~-~~ggg~v~vP~G-~yl~~~l~l----~s-~v~l~l~gtL~~s~d~   94 (448)
T 3jur_A           23 IPDREVNLLDFGARGDGRTDCSESFKRAIEE-LS-KQGGGRLIVPEG-VFLTGPIHL----KS-NIELHVKGTIKFIPDP   94 (448)
T ss_dssp             CCSCEEEGGGGTCCCEEEEECHHHHHHHHHH-HH-HHTCEEEEECSS-EEEESCEEC----CT-TEEEEESSEEEECCCG
T ss_pred             CCCcEEEEEecccCCCCCeecHHHHHHHHHh-hh-hcCCeEEEECCC-cEEEeeeEe----CC-CcEEEEEEEEEecCCH
Confidence            4578999999999999999999999999975 54 347899999999 899999999    78 999999999999998 


Q ss_pred             CCc-CC----------CCceecEEEeeeeceEEEeccEEeCCC--ccccc------------------------------
Q 037736           91 KSW-KQ----------CGSQCWLSLYDVQGLSIDGSGTIDGNG--RGWWN------------------------------  127 (377)
Q Consensus        91 ~~~-~~----------~~~~~~i~~~~~~ni~I~G~g~idg~g--~~~~~------------------------------  127 (377)
                      ++| +.          ....+||.+.+++||+|+|.|+|||+|  +.||+                              
T Consensus        95 ~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  174 (448)
T 3jur_A           95 ERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERG  174 (448)
T ss_dssp             GGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHT
T ss_pred             HHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhccc
Confidence            777 31          012468999999999999999999999  78984                              


Q ss_pred             ----------------ccEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEEEEEEECCCCCCCCCeeeccCcccEEEE
Q 037736          128 ----------------QAVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFSTQVNIL  191 (377)
Q Consensus       128 ----------------~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~  191 (377)
                                      .+|.|.+|+|++|+++++++++.|++++..|++++|++++|.++  ++++|||++.+|+||+|+
T Consensus       175 ~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~  252 (448)
T 3jur_A          175 TPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIE  252 (448)
T ss_dssp             CCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEE
T ss_pred             CcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEE
Confidence                            17899999999999999999999999999999999999999986  589999999999999999


Q ss_pred             eeEEEeCCceEEEcCC-----------ceeEEEEceee--cCCc-eeEeeccCCCCCCCCEEEEEEEceEEeCCceeEEE
Q 037736          192 DSSIKSGDDCVAINGG-----------SSNINITGVAC--GPGH-GISVGSLGLDGADDKVEEVHVRNCNFTGTQNGARI  257 (377)
Q Consensus       192 n~~i~~~dD~i~i~s~-----------~~nv~i~n~~~--~~~~-gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i  257 (377)
                      ||+|.++||||+++++           ++||+|+||+|  ..+| |++|||++    .+.++||+|+||++.++.+|++|
T Consensus       253 n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~GirI  328 (448)
T 3jur_A          253 KCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALRL  328 (448)
T ss_dssp             SCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEEE
T ss_pred             eeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEEE
Confidence            9999999999999997           89999999999  5666 89999986    57999999999999999999999


Q ss_pred             EecCCCCceEEeEEEEeEEEeccCccE-EEEeeecCCCCCCCCCcceEEEeEEEEeEEEeeCCcceEEEec-CCCceecE
Q 037736          258 KTSPGGSGYARRISFEHITLIASKNPI-IIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSADEKAITFDC-SEEGCFGI  335 (377)
Q Consensus       258 ~~~~~~~g~i~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~~~~~~~i~~-~~~~i~~i  335 (377)
                      |++.+++|.++||+|+|++|+++.+++ .|++.|+...    +...+.|+||+|+||+++. ...++.|.| ++.||++|
T Consensus       329 Kt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~----~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~~~I  403 (448)
T 3jur_A          329 KTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEE----GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYVKDI  403 (448)
T ss_dssp             ECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGCC----CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCEEEE
T ss_pred             EEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCCC----CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCEeeE
Confidence            999888999999999999999999988 9999887541    3345799999999999987 567999999 99999999


Q ss_pred             EEEeEEEEecC
Q 037736          336 KMEQVSITSSV  346 (377)
Q Consensus       336 ~~~nv~i~~~~  346 (377)
                      +|+||.+.+..
T Consensus       404 ~~~nv~i~~~~  414 (448)
T 3jur_A          404 LISDTIIEGAK  414 (448)
T ss_dssp             EEEEEEEESCS
T ss_pred             EEEEEEEEccc
Confidence            99999998653
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 377
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 6e-75
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-63
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 4e-56
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-54
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 7e-52
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-52
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 2e-51
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 5e-46
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  236 bits (603), Expect = 6e-75
 Identities = 80/361 (22%), Positives = 144/361 (39%), Gaps = 29/361 (8%)

Query: 13  GRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLKSTTFRGPC 72
              T N++ +GA+ D  TD   A   AW    +A      + IP+    L    T  G  
Sbjct: 17  ATKTCNILSYGAVADNSTDVGPAITSAW----AACKSGGLVYIPSGNYALNTWVTLTGGS 72

Query: 73  KSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQ---- 128
                 IQ+ G I    + S             D +  S    G + G G  +  +    
Sbjct: 73  A---TAIQLDGIIYRTGTASGNMI---AVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYG 126

Query: 129 --AVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISFST 186
              +   +  +  V  I +V++P  H +++TC+   V N+ I    +    DGID+  S 
Sbjct: 127 ARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGS- 184

Query: 187 QVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVRNC 246
            + + D  + + D+CV +   ++NI +  + C    G ++GSLG D     V ++  RN 
Sbjct: 185 NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNV 241

Query: 247 NFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVS 306
               +     IK+  GGSG    +  E+     +   + ID ++            V ++
Sbjct: 242 YTWSSNQMYMIKS-NGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA--GDGVQLN 298

Query: 307 EVTYSDVQGSS---ADEKAITFDCSEEG-CFGIKMEQVSITSSVPGKETTAYCQNAHGTS 362
            +T  + +G+    A    I   CS+   C  + +E ++I +   G      C++A+G+ 
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES-GSSELYLCRSAYGSG 357

Query: 363 T 363
            
Sbjct: 358 Y 358
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.89
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.87
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.87
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.86
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.85
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.77
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.73
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.71
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.68
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.73
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.62
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.54
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.35
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.16
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.12
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.11
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.9
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.84
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.84
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.82
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.77
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.73
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.5
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.28
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.27
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.83
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.18
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.11
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.09
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 88.43
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 82.74
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 82.18
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 81.35
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.6e-58  Score=448.14  Aligned_cols=330  Identities=23%  Similarity=0.409  Sum_probs=285.5

Q ss_pred             CCceEEEccccccCCCCcchHHHHHHHHHHhhhcCCCCcEEEecCCcEEEee-eeeeeCCCCCcceEEEEEEEEEcCCC-
Q 037736           13 GRNTFNVVDFGAIGDGKTDDSDAFAKAWTDFCSATGDSATLEIPANKAFLLK-STTFRGPCKSNSVNIQVSGTIVAPDS-   90 (377)
Q Consensus        13 ~~~~~~v~d~Ga~~dg~~D~t~aiq~Ai~~a~~~~~~g~~V~iP~G~~Y~~~-~l~l~~~~~s~~v~l~~~G~i~~~~~-   90 (377)
                      ..++|||+||||+|||++|||+|||+||+ ||+   +|++||||+| +|++. +|.|++  ++ ++.|+++|+|++... 
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~---~gg~V~iP~G-ty~l~~~i~l~g--~~-~~~l~~~G~i~~~~~~   88 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACK---SGGLVYIPSG-NYALNTWVTLTG--GS-ATAIQLDGIIYRTGTA   88 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT---BTCEEEECSS-EEEECSCEEEES--CE-EEEEEECSEEEECCCC
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC---CCCEEEECCC-cEEEeCcEEEcC--CC-ceEEEEeEEEEeccCC
Confidence            36799999999999999999999999995 787   5889999999 78665 599977  35 788999999988765 


Q ss_pred             CCcCCCCceecEEEeeeeceEEEeccEEeCCCcccccc------cEEEEeecceEEEeeEEeCCCceeEEEeCeecEEEE
Q 037736           91 KSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQ------AVYFHNCNNLQVKGITIVNSPKSHISINTCNGVSVS  164 (377)
Q Consensus        91 ~~~~~~~~~~~i~~~~~~ni~I~G~g~idg~g~~~~~~------~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~I~  164 (377)
                      ..+.    ..+....+.+.+.+.|.|+|||+|..||..      ++.|.+|+|++|+++++++++.|++.+..|++++|+
T Consensus        89 ~~~~----~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i~  164 (422)
T d1rmga_          89 SGNM----IAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVY  164 (422)
T ss_dssp             SSEE----EEEEEEEEEEEECSSSCCEEECCTHHHHTTTCCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEEE
T ss_pred             ccCE----EEeccCccEEEEEeecceEEecCcceecCCCCCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccEEEE
Confidence            3321    223334455666677889999999999965      789999999999999999999999999999999999


Q ss_pred             EEEEECCCCCCCCCeeeccCcccEEEEeeEEEeCCceEEEcCCceeEEEEceeecCCceeEeeccCCCCCCCCEEEEEEE
Q 037736          165 NIHIDSPEDSPNTDGIDISFSTQVNILDSSIKSGDDCVAINGGSSNINITGVACGPGHGISVGSLGLDGADDKVEEVHVR  244 (377)
Q Consensus       165 ~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~s~~~nv~i~n~~~~~~~gi~igs~~~~~~~~~i~ni~i~  244 (377)
                      |++|..+. .+++|||++.+ +||+|+||++.++||||+++++++||+|+|++|..+||++||+++.   ...++||+|+
T Consensus       165 nv~I~~~~-~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~nV~v~  239 (422)
T d1rmga_         165 NMAIRGGN-EGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVYR  239 (422)
T ss_dssp             EEEEECCS-STTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEEEEEE
T ss_pred             eeEEcCCC-CCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEEEEEE
Confidence            99999864 47899999976 5899999999999999999999999999999999999999999864   4679999999


Q ss_pred             ceEEeCCceeEEEEecCCCCceEEeEEEEeEEEeccCccEEEEeeecCCCCCCCCCcceEEEeEEEEeEEEeeC---Ccc
Q 037736          245 NCNFTGTQNGARIKTSPGGSGYARRISFEHITLIASKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVQGSSA---DEK  321 (377)
Q Consensus       245 n~~~~~~~~gi~i~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~ni~f~ni~~~~~---~~~  321 (377)
                      ||++.++.+++++|++. +.|.++||+|+|++|+++.++|.|++.|++....  ......|+||+|+||+++..   .+.
T Consensus       240 n~~~~~s~~g~~ik~~~-g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~--~~~~v~isnIt~~Ni~GT~~~~~~~~  316 (422)
T d1rmga_         240 NVYTWSSNQMYMIKSNG-GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV--AGDGVQLNNITVKNWKGTEANGATRP  316 (422)
T ss_dssp             EEEEESSSCSEEEEEBB-CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB--SSSCCEEEEEEEEEEEEEESCTTTSC
T ss_pred             eEEEeCCCceEEEEEcC-CCceecceEEEEEEEecccccEEEecccCCCCCC--CCCCeEEEEEEEEeEEEEecCCcccc
Confidence            99999999999999864 4689999999999999999999999999864321  33567899999999999863   356


Q ss_pred             eEEEec-CCCceecEEEEeEEEEecCCCCccceeeeccccccc
Q 037736          322 AITFDC-SEEGCFGIKMEQVSITSSVPGKETTAYCQNAHGTST  363 (377)
Q Consensus       322 ~~~i~~-~~~~i~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~  363 (377)
                      ++.|.| ++.||+||+|+||.+..+. +..+.++|.+++|+..
T Consensus       317 ~i~l~Cs~~~pc~ni~l~ni~l~~~~-g~~~~~~C~na~G~~~  358 (422)
T d1rmga_         317 PIRVVCSDTAPCTDLTLEDIAIWTES-GSSELYLCRSAYGSGY  358 (422)
T ss_dssp             SEEEECBTTBCEEEEEEEEEEEEESS-SSCEEEEEESEEEEST
T ss_pred             cEEEEcCCCCCCcceEEEEEEEEcCC-CCCcceEEECceeeEE
Confidence            899999 9999999999999999876 5666789999998653
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure