Citrus Sinensis ID: 037770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC
Secondary Structure (PSIPRED)
cEEEEEEEccEEEEEEEcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
EEEEEEEEccEEEEEEEccccccccHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHccHc
Coil and Loop (DISEMBL)
FNVETVeyknisftvwdvggqdkirpLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC
Flexible Loop (DISEMBL)
fnvetveyknisftvwdvggQDKIRPLWRHYFQNTQGlifvvdsndrDRIVEARDELHRMLNEVC
Low Complexity Region (SEG)
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC
Disordered region (IsUnstruct)
****TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR**I***************
Disordered Region (DISOPRED)
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC
Disordered Region (DISEMBL)
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC
Disordered Region (DISPRO)
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
O48920	181	ADP-ribosylation factor O	N/A	no	0.969	0.348	0.984	9e-32
P49076	181	ADP-ribosylation factor O	N/A	no	0.969	0.348	0.984	9e-32
P51822	181	ADP-ribosylation factor 1	N/A	no	0.969	0.348	0.984	1e-31
P0DH91	181	ADP-ribosylation factor 2	yes	no	0.969	0.348	0.984	1e-31
Q9LQC8	181	ADP-ribosylation factor 2	yes	no	0.969	0.348	0.984	1e-31
P36397	181	ADP-ribosylation factor 1	yes	no	0.969	0.348	0.984	1e-31
Q06396	181	ADP-ribosylation factor 1	yes	no	0.969	0.348	0.968	3e-31
P51823	181	ADP-ribosylation factor 2	yes	no	0.969	0.348	0.968	3e-31
P51821	181	ADP-ribosylation factor 1	N/A	no	0.969	0.348	0.968	3e-31
O48649	181	ADP-ribosylation factor 1	N/A	no	0.969	0.348	0.968	6e-31

>sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.
Vigna unguiculata (taxid: 3917)

>sp|P49076|ARF_MAIZE ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Zea mays (taxid: 4577)

>sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Daucus carota (taxid: 4039)

>sp|P0DH91|ARF2B_ARATH ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQC8|ARF2A_ARATH ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3

 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/63 (96%), Positives = 62/63 (98%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Salix bakko (taxid: 72444)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
296089819	591	unnamed protein product [Vitis vinifera]	0.969	0.106	0.984	2e-32
222636687	279	hypothetical protein OsJ_23579 [Oryza sa	0.969	0.225	0.984	2e-32
413932675	241	hypothetical protein ZEAMMB73_332083 [Ze	0.969	0.261	0.984	6e-32
20161472	376	ADP-ribosylation factor [Oryza sativa Ja	0.969	0.167	0.968	2e-31
297736783	211	unnamed protein product [Vitis vinifera]	0.969	0.298	0.984	2e-31
125546170	354	hypothetical protein OsI_14032 [Oryza sa	0.969	0.177	0.984	2e-31
413932673	206	hypothetical protein ZEAMMB73_332083 [Ze	0.969	0.305	0.984	4e-31
47026845	199	ADP-ribosylation factor [Hyacinthus orie	0.969	0.316	0.984	6e-31
222636686	241	hypothetical protein OsJ_23578 [Oryza sa	0.969	0.261	0.984	1e-30
424513379	222	ADP-ribosylation factor [Bathycoccus pra	0.969	0.283	0.984	1e-30

>gi|296089819|emb|CBI39638.3| unnamed protein product [Vitis vinifera]

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 461 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 520

Query: 61  LNE 63
           LNE
Sbjct: 521 LNE 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222636687|gb|EEE66819.1| hypothetical protein OsJ_23579 [Oryza sativa Japonica Group]

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 149 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 208

Query: 61  LNE 63
           LNE
Sbjct: 209 LNE 211

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413932675|gb|AFW67226.1| hypothetical protein ZEAMMB73_332083 [Zea mays]

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 103 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 162

Query: 61  LNE 63
           LNE
Sbjct: 163 LNE 165

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20161472|dbj|BAB90396.1| ADP-ribosylation factor [Oryza sativa Japonica Group]

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRM
Sbjct: 229 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRM 288

Query: 61  LNE 63
           LNE
Sbjct: 289 LNE 291

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736783|emb|CBI25984.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 81  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 140

Query: 61  LNE 63
           LNE
Sbjct: 141 LNE 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125546170|gb|EAY92309.1| hypothetical protein OsI_14032 [Oryza sativa Indica Group]

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413932673|gb|AFW67224.1| hypothetical protein ZEAMMB73_332083 [Zea mays]

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47026845|gb|AAT08648.1| ADP-ribosylation factor [Hyacinthus orientalis]

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 69  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 128

Query: 61  LNE 63
           LNE
Sbjct: 129 LNE 131

Source: Hyacinthus orientalis

Species: Hyacinthus orientalis

Genus: Hyacinthus

Family: Hyacinthaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222636686|gb|EEE66818.1| hypothetical protein OsJ_23578 [Oryza sativa Japonica Group]

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 111 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 170

Query: 61  LNE 63
           LNE
Sbjct: 171 LNE 173

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|424513379|emb|CCO66001.1| ADP-ribosylation factor [Bathycoccus prasinos]

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/63 (98%), Positives = 62/63 (98%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI EARDELHRM
Sbjct: 93  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRISEARDELHRM 152

Query: 61  LNE 63
           LNE
Sbjct: 153 LNE 155

Source: Bathycoccus prasinos

Species: Bathycoccus prasinos

Genus: Bathycoccus

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
TAIR|locus:2019948	181	ARFA1F "ADP-ribosylation facto	0.969	0.348	0.984	1.1e-30
TAIR|locus:2028926	181	ARF1 "ADP-ribosylation factor	0.969	0.348	0.984	1.1e-30
TAIR|locus:2026780	181	ARFA1D [Arabidopsis thaliana (	0.969	0.348	0.984	1.1e-30
TAIR|locus:2065114	181	ARF1A1C [Arabidopsis thaliana	0.969	0.348	0.984	1.1e-30
TAIR|locus:2098063	181	ARFA1E "ADP-ribosylation facto	0.969	0.348	0.984	1.1e-30
TAIR|locus:2222677	188	ARFA1B "ADP-ribosylation facto	0.969	0.335	0.984	1.1e-30
UNIPROTKB|P51823	181	ARF "ADP-ribosylation factor 2	0.969	0.348	0.968	3e-30
ASPGD|ASPL0000058227	183	arfA [Emericella nidulans (tax	0.969	0.344	0.936	7.1e-29
WB|WBGene00000183	180	arf-3 [Caenorhabditis elegans	0.969	0.35	0.904	2.4e-28
CGD|CAL0003401	181	ARF2 [Candida albicans (taxid:	0.969	0.348	0.904	8.2e-28

TAIR|locus:2019948 ARFA1F "ADP-ribosylation factor A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct:    51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005507 "copper ion binding" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2028926 ARF1 "ADP-ribosylation factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct:    51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2026780 ARFA1D [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct:    51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2065114 ARF1A1C [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct:    51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2098063 ARFA1E "ADP-ribosylation factor A1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct:    51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2222677 ARFA1B "ADP-ribosylation factor A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct:    51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

UNIPROTKB|P51823 ARF "ADP-ribosylation factor 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 61/63 (96%), Positives = 63/63 (100%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRM
Sbjct:    51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0006471 "protein ADP-ribosylation" evidence=IEP;ISS

GO:0006886 "intracellular protein transport" evidence=IEP;ISS

GO:0016192 "vesicle-mediated transport" evidence=IEP;ISS

ASPGD|ASPL0000058227 arfA [Emericella nidulans (taxid:162425)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 59/63 (93%), Positives = 61/63 (96%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRDRIVEAR+EL RM
Sbjct:    51 FNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRIVEAREELQRM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0006893 "Golgi to plasma membrane transport" evidence=IEA

WB|WBGene00000183 arf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 57/63 (90%), Positives = 62/63 (98%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND++RI E+R+ELH+M
Sbjct:    51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERIEESREELHKM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

CGD|CAL0003401 ARF2 [Candida albicans (taxid:5476)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 57/63 (90%), Positives = 61/63 (96%)

Query:     1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
             FNVETVEYKNISFTVWDVGGQDKIRPLWR+YFQNTQG+IFVVDSNDRDRI EAR+EL +M
Sbjct:    51 FNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRIAEAREELQQM 110

Query:    61 LNE 63
             LNE
Sbjct:   111 LNE 113

GO:0035690 "cellular response to drug" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48920	ARF_VIGUN	No assigned EC number	0.9841	0.9692	0.3480	N/A	no
O00909	ARF1_DICDI	No assigned EC number	0.8888	0.9692	0.3461	yes	no
P22274	ARF_CANAL	No assigned EC number	0.9047	0.9692	0.3519	N/A	no
P91924	ARF_DUGJA	No assigned EC number	0.9206	0.9692	0.3442	N/A	no
P36397	ARF1_ARATH	No assigned EC number	0.9841	0.9692	0.3480	yes	no
Q7RVM2	ARF_NEUCR	No assigned EC number	0.9206	0.9692	0.3405	N/A	no
P61210	ARF1_LOCMI	No assigned EC number	0.9206	0.9692	0.3461	N/A	no
P84080	ARF1_BOVIN	No assigned EC number	0.9047	0.9692	0.3480	yes	no
P51643	ARF1_XENLA	No assigned EC number	0.9047	0.9692	0.3480	N/A	no
P51822	ARF1_DAUCA	No assigned EC number	0.9841	0.9692	0.3480	N/A	no
P51823	ARF2_ORYSJ	No assigned EC number	0.9682	0.9692	0.3480	yes	no
P51821	ARF1_CHLRE	No assigned EC number	0.9682	0.9692	0.3480	N/A	no
P51824	ARF1_SOLTU	No assigned EC number	0.9206	0.9692	0.3197	N/A	no
P84077	ARF1_HUMAN	No assigned EC number	0.9047	0.9692	0.3480	yes	no
Q94650	ARF1_PLAFA	No assigned EC number	0.8412	0.9692	0.3480	yes	no
P36579	ARF1_SCHPO	No assigned EC number	0.8888	0.9692	0.35	yes	no
Q7KQL3	ARF1_PLAF7	No assigned EC number	0.8412	0.9692	0.3480	yes	no
P84079	ARF1_RAT	No assigned EC number	0.9047	0.9692	0.3480	yes	no
P84078	ARF1_MOUSE	No assigned EC number	0.9047	0.9692	0.3480	yes	no
Q9LQC8	ARF2A_ARATH	No assigned EC number	0.9841	0.9692	0.3480	yes	no
P0CM17	ARF_CRYNB	No assigned EC number	0.9047	0.9692	0.3461	N/A	no
P0CM16	ARF_CRYNJ	No assigned EC number	0.9047	0.9692	0.3461	yes	no
Q06396	ARF1_ORYSJ	No assigned EC number	0.9682	0.9692	0.3480	yes	no
P61205	ARF3_MOUSE	No assigned EC number	0.9047	0.9692	0.3480	yes	no
P61204	ARF3_HUMAN	No assigned EC number	0.9047	0.9692	0.3480	yes	no
P61207	ARF3_TAKRU	No assigned EC number	0.9047	0.9692	0.3480	N/A	no
P61206	ARF3_RAT	No assigned EC number	0.9047	0.9692	0.3480	yes	no
O48649	ARF1_SALBA	No assigned EC number	0.9682	0.9692	0.3480	N/A	no
Q61LA8	ARF12_CAEBR	No assigned EC number	0.9047	0.9692	0.3480	N/A	no
P61209	ARF1_DROME	No assigned EC number	0.9206	0.9692	0.3461	yes	no
P49076	ARF_MAIZE	No assigned EC number	0.9841	0.9692	0.3480	N/A	no
Q4R5P2	ARF1_MACFA	No assigned EC number	0.9047	0.9692	0.3480	N/A	no
P34727	ARF_AJECA	No assigned EC number	0.9206	0.9692	0.3442	N/A	no
Q5E9I6	ARF3_BOVIN	No assigned EC number	0.9047	0.9692	0.3480	yes	no
P0DH91	ARF2B_ARATH	No assigned EC number	0.9841	0.9692	0.3480	yes	no
Q75A26	ARF_ASHGO	No assigned EC number	0.8730	0.9692	0.3480	yes	no
O23778	ARF1_CATRO	No assigned EC number	0.9523	0.9692	0.3480	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	65
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-47
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-46
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	4e-43
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-41
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-41
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-40
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-39
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-32
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-29
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-26
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-25
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	4e-25
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-24
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-22
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	6e-22
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	4e-18
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-16
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-16
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	1e-15
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	1e-13
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-13
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	2e-11
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-07
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-06
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-06
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	8e-06
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-05
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	2e-05
smart00275	342	smart00275, G_alpha, G protein alpha subunit	3e-05
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-04
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-04
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-04
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-04
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-04
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	3e-04
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	5e-04
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	6e-04
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	6e-04
pfam00071	162	pfam00071, Ras, Ras family	7e-04
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	8e-04
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	0.001
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	0.001
cd09915	175	cd09915, Rag, Rag GTPase subfamily of Ras-related	0.001
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	0.001
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	0.003
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	0.004

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  147 bits (372), Expect = 1e-47
 Identities = 59/63 (93%), Positives = 61/63 (96%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI EAR+EL RM
Sbjct: 34 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRM 93

Query: 61 LNE 63
          LNE
Sbjct: 94 LNE 96

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  144 bits (365), Expect = 2e-46
 Identities = 62/63 (98%), Positives = 63/63 (100%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

Length = 181

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  136 bits (344), Expect = 4e-43
 Identities = 51/63 (80%), Positives = 59/63 (93%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKN+ FT+WDVGGQDK+RPLWRHY+QNT GLIFVVDSNDR+RI +AR+EL RM
Sbjct: 51  FNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERM 110

Query: 61  LNE 63
           L+E
Sbjct: 111 LSE 113

Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  132 bits (334), Expect = 1e-41
 Identities = 58/63 (92%), Positives = 60/63 (95%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV YKNISFTVWDVGGQDKIRPLWRHY+ NTQGLIFVVDSNDRDRI EAR+ELHRM
Sbjct: 47  FNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRM 106

Query: 61  LNE 63
           LNE
Sbjct: 107 LNE 109

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  130 bits (330), Expect = 4e-41
 Identities = 50/63 (79%), Positives = 60/63 (95%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETVEYKN+ FTVWDVGGQDKIRPLW+HY++NT GLIFVVDS+DR+RI EA++ELH++
Sbjct: 33 FNVETVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKL 92

Query: 61 LNE 63
          LNE
Sbjct: 93 LNE 95

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  128 bits (325), Expect = 3e-40
 Identities = 46/63 (73%), Positives = 54/63 (85%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV YKN+ FTVWDVGGQ+ +RPLWR+YF NT  +IFVVDS DRDRI EA++ELH +
Sbjct: 48  FNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHAL 107

Query: 61  LNE 63
           LNE
Sbjct: 108 LNE 110

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  126 bits (317), Expect = 3e-39
 Identities = 50/63 (79%), Positives = 55/63 (87%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVDS DRDRI EAR ELHR+
Sbjct: 43  FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRI 102

Query: 61  LNE 63
           +N+
Sbjct: 103 IND 105

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  109 bits (273), Expect = 1e-32
 Identities = 39/63 (61%), Positives = 47/63 (74%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ ELH M
Sbjct: 33 FNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAM 92

Query: 61 LNE 63
          L E
Sbjct: 93 LEE 95

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score =  102 bits (255), Expect = 1e-29
 Identities = 40/63 (63%), Positives = 53/63 (84%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FV+DS+ RDR+ EA  EL ++
Sbjct: 33 FNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKL 92

Query: 61 LNE 63
          L E
Sbjct: 93 LTE 95

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 93.6 bits (233), Expect = 3e-26
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
           NVE + YKNI F +WD+GGQ+ +R  W  Y+ NT  +I V+DS DR+R+   ++EL++ML
Sbjct: 50  NVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKML 109

Query: 62  N 62
            
Sbjct: 110 A 110

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 91.3 bits (227), Expect = 1e-25
 Identities = 32/63 (50%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 1  FNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHR 59
          FNVE ++  K++S TVWDVGGQ+K+R +W+ Y +NT GL++VVDS+D  R+ E++ EL  
Sbjct: 33 FNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKH 92

Query: 60 MLN 62
          +L 
Sbjct: 93 ILK 95

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 90.5 bits (225), Expect = 4e-25
 Identities = 33/64 (51%), Positives = 42/64 (65%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN++ V+       VWD+GGQ KIRP WR+YF+NT  LI+V+DS DR R  EA  EL  +
Sbjct: 49  FNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVEL 108

Query: 61  LNEV 64
           L E 
Sbjct: 109 LEEE 112

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 87.8 bits (218), Expect = 4e-24
 Identities = 30/63 (47%), Positives = 45/63 (71%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN++T+EY      +WDVGGQ  +R  WR+YF++T  LI+VVDS+DR R+ + + EL ++
Sbjct: 48  FNIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKL 107

Query: 61  LNE 63
           L E
Sbjct: 108 LVE 110

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 83.7 bits (207), Expect = 3e-22
 Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 5/65 (7%)

Query: 1   FNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD 55
           FN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ 
Sbjct: 37  FNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKT 96

Query: 56  ELHRM 60
           ELH++
Sbjct: 97  ELHKI 101

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 82.1 bits (203), Expect = 6e-22
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVE+ +  N+SFT +D+ GQ K R LW HY++N QG+IFV+DS+DR R+V A+DEL  +
Sbjct: 35 FNVESFKKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELL 94

Query: 61 LN 62
          LN
Sbjct: 95 LN 96

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 72.7 bits (179), Expect = 4e-18
 Identities = 22/63 (34%), Positives = 40/63 (63%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
              E +   N+ FT +D+GG ++ R +W+ YF    G++F+VD+ D +R  E+++EL  +
Sbjct: 53  PTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSL 112

Query: 61  LNE 63
           LN+
Sbjct: 113 LND 115

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 68.1 bits (167), Expect = 2e-16
 Identities = 22/61 (36%), Positives = 39/61 (63%)

Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
           N+ T+E        WD+GGQ+++R LW  Y+  + G+I+V+DS DR+R  E++    +++
Sbjct: 42  NIGTIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVI 101

Query: 62  N 62
           N
Sbjct: 102 N 102

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 67.7 bits (166), Expect = 2e-16
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FN+  V   N++  VWD+GGQ + R +W  Y +    +++VVD+ DR+++  A++ELH +
Sbjct: 34 FNMRKVTKGNVTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDL 93

Query: 61 LN 62
          L 
Sbjct: 94 LE 95

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 65.9 bits (161), Expect = 1e-15
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FN   +  ++    + ++GG   +R  W+ Y   +QGLIFVVDS D +R+  AR ELH++
Sbjct: 34 FNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQL 93

Query: 61 LNEVC 65
          L    
Sbjct: 94 LQHPP 98

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 60.9 bits (148), Expect = 1e-13
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 14 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63
           ++D+GG    R +W +Y+    GL+FVVDS+D DR+ E ++ L  +L  
Sbjct: 46 CIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQH 95

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 60.4 bits (146), Expect = 4e-13
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
                  +NI   +WD  GQ++ R L   Y++   G++ V DS  R+   E  +E    L
Sbjct: 45  KTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEEL 104

Query: 62  NEVC 65
            E+ 
Sbjct: 105 RELA 108

Length = 219

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 55.7 bits (134), Expect = 2e-11
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 4   ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62
           E +   NI FT +D+GG  + R LW+ YF    G++++VD+ D++R  E++ EL  +L+
Sbjct: 54  EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLS 112

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 45.8 bits (108), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD 55
           TV  K +  T+WD  GQ++ R L   Y++N QG+I V D   R+      D
Sbjct: 56  TVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSD 106

Length = 211

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 5  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV 64
          TV+ K +   +WD  GQ++ R L   Y++  QG+I V D   RD      D L   LNE+
Sbjct: 43 TVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTF----DNLDTWLNEL 98

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 40.9 bits (96), Expect = 5e-06
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVDSNDRDRIVEARDELHR 59
            ++   +   + D  G D+   L      R   +    ++ VVDS DR+   +A+  + R
Sbjct: 41  ELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILR 100

Query: 60  MLNE 63
            L +
Sbjct: 101 RLRK 104

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 40.7 bits (96), Expect = 8e-06
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 42
             ++K + F ++DVGGQ   R  W H F++   +IFVV
Sbjct: 162 KFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVV 199

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F  +T+E   K +   +WD  GQ++ R +   Y++   G I V D  +R+
Sbjct: 37 FKSKTIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRE 86

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 1  FNVETVEYKNISFTV--WDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 45
          +    +E    ++     D  GQ+    + R Y++  +  + V D  
Sbjct: 39 YVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIV 85

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 3   VETV-EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           +ET    KN+ F ++DVGGQ   R  W H F++   +IFVV  ++ D+++   + ++RM
Sbjct: 152 IETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDESVNRM 210

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 4   ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RIVEAR-----DEL 57
                K + F ++DVGGQ   R  W H F N   +IF V  ++ D  + E        E 
Sbjct: 177 TAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQES 236

Query: 58  HRMLNEVC 65
             +   +C
Sbjct: 237 LNLFESIC 244

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F + T+E   K +   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 39 FKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE 88

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D  
Sbjct: 40 FKIRTIELDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEK 89

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 36.4 bits (85), Expect = 2e-04
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 9   KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR---DELHRMLNE 63
           K I   +WD  GQ++   L   Y+++  G I V D  D D   + +    EL +M   
Sbjct: 47  KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN 104

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 5  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          T++ K I   +WD  GQ+  R + R Y++   G + V D   R+
Sbjct: 49 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 92

Length = 210

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 43
          F ++TVE   K I   +WD  GQ++   +   Y+++ +G+I V D
Sbjct: 37 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 3  VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 47
          +E      I   +WD  GQ++ R + R Y++N+ G++ V D  +R
Sbjct: 44 IEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNR 88

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 6  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          V  K++   +WD  GQ++ R + R Y++   G + V D   R+
Sbjct: 44 VGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE 86

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 10 NISFTVWDVGGQDKIRPLWRHY-----FQNTQGLIFVVDSNDRD 48
          N++  +WD  GQD     +        F N   LI+V D   R+
Sbjct: 47 NLTLNLWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE 90

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 35.3 bits (81), Expect = 6e-04
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 1  FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 43
          F ++TVE K   I   +WD  GQ++ R + + Y+++   LI   D
Sbjct: 44 FMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYD 88

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 34.8 bits (81), Expect = 7e-04
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR---D 55
           F  +T+E   K +   +WD  GQ++ R L   Y++  QG + V D   RD     +   +
Sbjct: 36  FYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLE 95

Query: 56  ELHRMLNE 63
           E+ R  +E
Sbjct: 96  EILRHADE 103

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 34.8 bits (81), Expect = 8e-04
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F  +T+E   K +   +WD  GQ++ R +   Y++   G + V D  +R+
Sbjct: 37 FKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRE 86

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 6  VEYKNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIFVVD 43
          ++ + I   +WD  GQ++ R  + +HY++N   ++FV D
Sbjct: 46 IDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYD 84

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 5  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          T++ K I   +WD  GQ+  R + R Y++   G + V D   R+
Sbjct: 47 TIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 90

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 10 NISFTVWDVGGQDKIRPL---WRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
          N +  +WD  GQD          H FQ    LI+V+D   +D  ++A   L + L
Sbjct: 47 NXTLNLWDCPGQDVFFEPTKDKEHIFQXVGALIYVIDV--QDEYLKAITILAKAL 99

Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 1   FNVETVEYKNISFTV--WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH 58
           F +E  E   + F++  WD  GQ++ + +   Y++  Q +I V D  D   +   R  L 
Sbjct: 37  FEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLE 96

Query: 59  RMLNE 63
             L E
Sbjct: 97  DALKE 101

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 6   VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR------DRIVEARDE 56
           ++ + +   +WD  GQ +   ++R Y +  QG+I V D  +R      DR ++  DE
Sbjct: 50  LDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE 106

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 32.9 bits (75), Expect = 0.004
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH 58
           F + TVE   + +   +WD  GQ++ R +   Y++ T G+I V D  + +  V  +  L 
Sbjct: 43  FKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQ 102

Query: 59  RMLN 62
            +  
Sbjct: 103 EIEQ 106

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.85
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.83
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.82
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.81
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.79
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.77
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.76
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.75
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.75
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.75
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.75
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.74
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.72
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.71
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.71
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.7
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.7
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.7
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.69
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.69
PLN00223	181	ADP-ribosylation factor; Provisional	99.68
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.67
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.66
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.66
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.66
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.66
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.66
PTZ00099	176	rab6; Provisional	99.64
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.64
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.64
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.64
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.64
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.63
PTZ00133	182	ADP-ribosylation factor; Provisional	99.63
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.63
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.62
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.61
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.61
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.6
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.59
PLN00023	334	GTP-binding protein; Provisional	99.59
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.59
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.59
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.58
KOG0394	210	consensus Ras-related GTPase [General function pre	99.58
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.57
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.56
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.55
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.55
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.55
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.54
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.54
PTZ00369	189	Ras-like protein; Provisional	99.54
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.54
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.53
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.53
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.53
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.53
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.52
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.52
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.52
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.52
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.51
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.51
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.5
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.49
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.49
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.48
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.48
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.48
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.48
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.47
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.47
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.47
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.47
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.47
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.45
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.45
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.45
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.45
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.45
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.45
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.44
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.44
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.44
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.44
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.43
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.43
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.43
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.43
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.42
PLN03110	216	Rab GTPase; Provisional	99.42
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.42
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.42
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.42
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.42
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.42
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.42
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.41
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.41
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.4
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.4
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.4
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.4
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.39
PLN03118	211	Rab family protein; Provisional	99.38
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.37
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.37
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.36
KOG1673	205	consensus Ras GTPases [General function prediction	99.36
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.36
PLN03108	210	Rab family protein; Provisional	99.35
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.34
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.33
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.32
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.32
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.31
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.31
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.3
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.3
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.3
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.29
KOG0395	196	consensus Ras-related GTPase [General function pre	99.26
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.25
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.25
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.23
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.23
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.22
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.21
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.17
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.17
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.17
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.17
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.15
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.14
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.11
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.1
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.09
COG1100	219	GTPase SAR1 and related small G proteins [General	99.09
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.06
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.01
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.91
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.86
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.79
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.74
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.74
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	98.7
COG2229	187	Predicted GTPase [General function prediction only	98.68
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.66
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.57
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.57
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.56
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.55
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.55
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.52
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.48
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.47
PRK12299	335	obgE GTPase CgtA; Reviewed	98.46
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.43
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.43
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.42
PRK05433	600	GTP-binding protein LepA; Provisional	98.41
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.4
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.38
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.37
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.35
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.34
cd00881	189	GTP_translation_factor GTP translation factor fami	98.33
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.31
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.26
PRK10218	607	GTP-binding protein; Provisional	98.25
PRK05306	787	infB translation initiation factor IF-2; Validated	98.24
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.19
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.18
PRK13351	687	elongation factor G; Reviewed	98.18
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.15
CHL00189	742	infB translation initiation factor 2; Provisional	98.15
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.14
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.14
PRK03003	472	GTP-binding protein Der; Reviewed	98.14
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.13
PRK00093	435	GTP-binding protein Der; Reviewed	98.12
PRK04004	586	translation initiation factor IF-2; Validated	98.1
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.08
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.08
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.08
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.08
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.06
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.05
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.02
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.01
PRK12317	425	elongation factor 1-alpha; Reviewed	98.01
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.01
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.96
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.94
PRK15494	339	era GTPase Era; Provisional	97.87
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	97.87
PRK03003	472	GTP-binding protein Der; Reviewed	97.86
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	97.84
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.84
PRK12297	424	obgE GTPase CgtA; Reviewed	97.82
KOG3886	295	consensus GTP-binding protein [Signal transduction	97.8
PRK11058	426	GTPase HflX; Provisional	97.77
PRK12740	668	elongation factor G; Reviewed	97.75
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	97.69
PRK14845	1049	translation initiation factor IF-2; Provisional	97.66
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	97.65
KOG0090	238	consensus Signal recognition particle receptor, be	97.63
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.63
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	97.62
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	97.56
PRK12296	500	obgE GTPase CgtA; Reviewed	97.55
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	97.53
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.5
TIGR00485	394	EF-Tu translation elongation factor TU. This align	97.5
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.48
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	97.47
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	97.43
PRK04000	411	translation initiation factor IF-2 subunit gamma;	97.38
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.33
PRK15467	158	ethanolamine utilization protein EutP; Provisional	97.32
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	97.32
PRK04213	201	GTP-binding protein; Provisional	97.31
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.3
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	97.25
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.16
PRK12298	390	obgE GTPase CgtA; Reviewed	97.15
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.04
PLN00043	447	elongation factor 1-alpha; Provisional	97.02
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	97.0
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	96.96
PRK12736	394	elongation factor Tu; Reviewed	96.9
PRK00093	435	GTP-binding protein Der; Reviewed	96.9
PRK12739	691	elongation factor G; Reviewed	96.82
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	96.81
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	96.71
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	96.67
PRK00089	292	era GTPase Era; Reviewed	96.61
PTZ00141	446	elongation factor 1- alpha; Provisional	96.61
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	96.47
PRK12735	396	elongation factor Tu; Reviewed	96.46
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.38
PLN03126	478	Elongation factor Tu; Provisional	96.38
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	96.36
PRK09602	396	translation-associated GTPase; Reviewed	96.19
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.18
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	95.95
PRK07560	731	elongation factor EF-2; Reviewed	95.89
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	95.83
CHL00071	409	tufA elongation factor Tu	95.8
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	95.77
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	95.74
PLN03127	447	Elongation factor Tu; Provisional	95.69
PRK00049	396	elongation factor Tu; Reviewed	95.65
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	95.56
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	95.5
KOG3887	347	consensus Predicted small GTPase involved in nucle	95.47
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	95.44
KOG0462	650	consensus Elongation factor-type GTP-binding prote	95.37
KOG0464	753	consensus Elongation factor G [Translation, riboso	95.26
PLN00116	843	translation elongation factor EF-2 subunit; Provis	95.08
PTZ00416	836	elongation factor 2; Provisional	94.91
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	94.9
PRK13768	253	GTPase; Provisional	94.82
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	94.78
PRK00007	693	elongation factor G; Reviewed	94.74
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	94.72
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	94.6
COG1217	603	TypA Predicted membrane GTPase involved in stress	94.47
COG0486	454	ThdF Predicted GTPase [General function prediction	94.38
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	94.16
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	94.13
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	93.81
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	93.48
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	93.44
COG1163	365	DRG Predicted GTPase [General function prediction	93.29
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	93.25
COG3596	296	Predicted GTPase [General function prediction only	93.21
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	93.05
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	92.93
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	92.6
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	91.6
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	91.25
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	91.06
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	90.84
KOG2052	513	consensus Activin A type IB receptor, serine/threo	90.54
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	89.55
KOG1145	683	consensus Mitochondrial translation initiation fac	89.19
COG1084	346	Predicted GTPase [General function prediction only	88.78
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	87.86
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	86.35
COG1159	298	Era GTPase [General function prediction only]	86.01
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	85.76
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	85.69
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	85.52
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	84.28
COG1160	444	Predicted GTPases [General function prediction onl	83.22
PRK09866	741	hypothetical protein; Provisional	82.84
COG0050	394	TufB GTPases - translation elongation factors [Tra	82.55
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	82.26
PF12098	104	DUF3574: Protein of unknown function (DUF3574); In	81.63
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	81.17
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	80.64
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	80.41
PTZ00258	390	GTP-binding protein; Provisional	80.17

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.4e-21  Score=99.97  Aligned_cols=59  Identities=22%  Similarity=0.554  Sum_probs=54.6

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      ++++.+.+++||++||++++.....||++++|||+|||+++.+||++++.|+.++-+..
T Consensus        53 ~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~  111 (205)
T KOG0084|consen   53 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA  111 (205)
T ss_pred             ecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc
Confidence            45677999999999999999999999999999999999999999999999999987653

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=6.5e-20  Score=93.81  Aligned_cols=64  Identities=84%  Similarity=1.396  Sum_probs=61.7

Q ss_pred             CcEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770            1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus         1 f~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      |||+++..+++++.+||.+|+.++++.|++||.+.+++|||+|+++++++.++++.+.+++++.
T Consensus        51 fnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~  114 (181)
T KOG0070|consen   51 FNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEP  114 (181)
T ss_pred             cceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCc
Confidence            8999999999999999999999999999999999999999999999999999999999988764

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.5e-19  Score=93.14  Aligned_cols=62  Identities=24%  Similarity=0.525  Sum_probs=55.2

Q ss_pred             EEEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770            3 VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus         3 ~~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      ..++...+  ++|++|||+|+++|..+-+.||++++++|+|||+++.+||..+++|++++.++.
T Consensus        44 tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~  107 (200)
T KOG0092|consen   44 TKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA  107 (200)
T ss_pred             EEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC
Confidence            34444444  899999999999999999999999999999999999999999999999987653

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=3.3e-19  Score=88.59  Aligned_cols=64  Identities=78%  Similarity=1.348  Sum_probs=61.5

Q ss_pred             CcEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770            1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus         1 f~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      |||++++.+++.|.+||++|++..+++|.+||.+..|+|||.|+.+++..+++++.+.+++++.
T Consensus        51 FnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~  114 (180)
T KOG0071|consen   51 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDR  114 (180)
T ss_pred             eeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCH
Confidence            8999999999999999999999999999999999999999999999999999999999988763

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=7.3e-19  Score=90.54  Aligned_cols=61  Identities=25%  Similarity=0.488  Sum_probs=57.2

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      .+++.+++++++||++|+++++.....||+++.|+|+|||++++++|+++..|+..+.++.
T Consensus        48 ~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~  108 (216)
T KOG0098|consen   48 VTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS  108 (216)
T ss_pred             EEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc
Confidence            4577888999999999999999999999999999999999999999999999999998763

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.77  E-value=2e-18  Score=86.58  Aligned_cols=63  Identities=25%  Similarity=0.614  Sum_probs=56.2

Q ss_pred             CcEEEEEE--CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            1 FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         1 f~~~~~~~--~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      |.+++++.  ..+.++|||++|+++++.+...||++.++++.|||+++.+||.++++|++++.++
T Consensus        45 fkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n  109 (198)
T KOG0079|consen   45 FKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN  109 (198)
T ss_pred             EEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc
Confidence            44566544  4589999999999999999999999999999999999999999999999998653

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.76  E-value=2.3e-18  Score=87.25  Aligned_cols=58  Identities=33%  Similarity=0.624  Sum_probs=53.7

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      +.+++++.+++-+||++|+++++.+.+.||+++.|+|+|||++.+++|.++..|++++
T Consensus        52 ~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~El  109 (209)
T KOG0080|consen   52 VMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKEL  109 (209)
T ss_pred             EEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHH
Confidence            3456778899999999999999999999999999999999999999999999998876

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.1e-17  Score=87.22  Aligned_cols=64  Identities=23%  Similarity=0.601  Sum_probs=56.2

Q ss_pred             CcEEEEEE--CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770            1 FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus         1 f~~~~~~~--~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      |.++++..  +.+.+++||++||++++.+...||+++.|+++|||+++..||+++..|++.+-++.
T Consensus        49 Fk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a  114 (207)
T KOG0078|consen   49 FKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA  114 (207)
T ss_pred             EEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC
Confidence            34455544  55889999999999999999999999999999999999999999999999887653

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.2e-18  Score=89.92  Aligned_cols=60  Identities=22%  Similarity=0.479  Sum_probs=56.0

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      .++++.+..++||++||++|+.....||+++.|.++|||++.+.+|+++..|++++..|.
T Consensus        57 ~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdha  116 (222)
T KOG0087|consen   57 NVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHA  116 (222)
T ss_pred             eecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcC
Confidence            456677899999999999999999999999999999999999999999999999998764

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.75  E-value=1.7e-17  Score=84.01  Aligned_cols=63  Identities=49%  Similarity=1.014  Sum_probs=59.7

Q ss_pred             CcEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         1 f~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      |+++++..+...+.+||++|+...+.+|+.||.+.+|+|+|+|++++.++++++..++.++.+
T Consensus        50 f~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~e  112 (185)
T KOG0073|consen   50 FQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVE  112 (185)
T ss_pred             eeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhh
Confidence            788999999999999999999999999999999999999999999999999999999887754

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=8.9e-18  Score=87.04  Aligned_cols=58  Identities=22%  Similarity=0.504  Sum_probs=53.3

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+..+.|++||++||++++.+.+.|++++..+|+|||+++.+||++..+|++.+.+.
T Consensus        66 l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e  123 (221)
T KOG0094|consen   66 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRE  123 (221)
T ss_pred             EcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhc
Confidence            3445689999999999999999999999999999999999999999999999988764

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.74  E-value=6.7e-18  Score=83.64  Aligned_cols=57  Identities=18%  Similarity=0.518  Sum_probs=52.7

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      .++.+.+++++||++||++++...+.||+.+++++++||++++.||++++.|+.+|-
T Consensus        41 ~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~   97 (192)
T KOG0083|consen   41 DMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIH   97 (192)
T ss_pred             ccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHH
Confidence            345567899999999999999999999999999999999999999999999998874

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.72  E-value=8.8e-18  Score=85.12  Aligned_cols=56  Identities=23%  Similarity=0.509  Sum_probs=51.5

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ......+.+||++|+++|..+-+.||++.+|+++|||+++++||+.+++|..++.+
T Consensus        58 ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~  113 (218)
T KOG0088|consen   58 EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRT  113 (218)
T ss_pred             ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHH
Confidence            34557899999999999999999999999999999999999999999999988753

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4e-17  Score=82.37  Aligned_cols=59  Identities=25%  Similarity=0.520  Sum_probs=53.5

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      +..+.++.+++++||++|+++++.....||+++.|.++|||++++++|+.+.+|+..+.
T Consensus        50 IinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR  108 (214)
T KOG0086|consen   50 IVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDAR  108 (214)
T ss_pred             eeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHH
Confidence            34456677999999999999999999999999999999999999999999999998653

>cd04120 Rab12 Rab12 subfamily

Probab=99.71  E-value=1.7e-16  Score=83.16  Aligned_cols=58  Identities=22%  Similarity=0.555  Sum_probs=51.2

Q ss_pred             EEEEEC--CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            4 ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         4 ~~~~~~--~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      .++...  .+.+++||++|+++++.+|..|+++++++++|||+++++||++++.|+..+.
T Consensus        40 ~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~   99 (202)
T cd04120          40 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID   99 (202)
T ss_pred             EEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            344443  4889999999999999999999999999999999999999999999887654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.70  E-value=1.4e-16  Score=79.79  Aligned_cols=63  Identities=35%  Similarity=0.856  Sum_probs=58.9

Q ss_pred             CcEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         1 f~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ||+.+++..++.+.+||++|+..++..|..|++++++++||+|.++++.....++.+..++..
T Consensus        55 fnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k  117 (186)
T KOG0075|consen   55 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDK  117 (186)
T ss_pred             ceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcc
Confidence            789999999999999999999999999999999999999999999999998888888877754

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.70  E-value=3e-16  Score=80.57  Aligned_cols=64  Identities=55%  Similarity=1.131  Sum_probs=60.0

Q ss_pred             CcEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770            1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus         1 f~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      |+++++...+..+.+||++|+..++..|+.|+.+++++|||+|+++.+++.++++.+.+++++.
T Consensus        48 ~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~  111 (175)
T PF00025_consen   48 FNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDP  111 (175)
T ss_dssp             EEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSG
T ss_pred             cccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchh
Confidence            5788899999999999999999999999999999999999999999999999999999988753

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.5e-16  Score=79.03  Aligned_cols=61  Identities=26%  Similarity=0.582  Sum_probs=53.4

Q ss_pred             CcEEEEEE--CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            1 FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         1 f~~~~~~~--~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      |.++++-.  +.+.+++||++|+++++.+...|+++++|+|+|||+++.+||+.++.|..+|.
T Consensus        58 FKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIk  120 (193)
T KOG0093|consen   58 FKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIK  120 (193)
T ss_pred             EEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHhe
Confidence            44555432  45899999999999999999999999999999999999999999999988763

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.69  E-value=5.1e-17  Score=82.64  Aligned_cols=55  Identities=22%  Similarity=0.540  Sum_probs=51.2

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      .+..+++++||++|+++++.+...||++.-|+++|||++|++||++++.|+++..
T Consensus        54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~  108 (213)
T KOG0091|consen   54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAA  108 (213)
T ss_pred             CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999999999999999999998864

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.69  E-value=4.2e-16  Score=77.80  Aligned_cols=63  Identities=48%  Similarity=0.991  Sum_probs=57.0

Q ss_pred             CcEEEEEECC-EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            1 FNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         1 f~~~~~~~~~-~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ||+.++.... +++.+||.+|+...+.+|..||.+.+++|||+|+++...|++..+.+-++++.
T Consensus        51 Fn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELlee  114 (185)
T KOG0074|consen   51 FNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEE  114 (185)
T ss_pred             cceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhh
Confidence            7888888876 89999999999999999999999999999999999999999988877776643

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.68  E-value=6.6e-16  Score=79.65  Aligned_cols=62  Identities=98%  Similarity=1.534  Sum_probs=56.0

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++++++..++.+++||++|+++++..|..++++++++|+|+|+++++++.++++++.+++++
T Consensus        52 ~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~  113 (181)
T PLN00223         52 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE  113 (181)
T ss_pred             eEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcC
Confidence            45567778899999999999999999999999999999999999999999999988887653

>cd04121 Rab40 Rab40 subfamily

Probab=99.67  E-value=7.4e-16  Score=80.10  Aligned_cols=55  Identities=22%  Similarity=0.481  Sum_probs=50.8

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..+.+++||++|+++++.++..++++++++++|||++++++|++++.|+.++.+.
T Consensus        53 ~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~  107 (189)
T cd04121          53 RRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH  107 (189)
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            3488999999999999999999999999999999999999999999999988643

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.66  E-value=1.9e-15  Score=76.44  Aligned_cols=62  Identities=94%  Similarity=1.456  Sum_probs=55.5

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +++.+....+.+.+||++|++++...|..++++++++++|+|++++++|+++.+++.+++++
T Consensus        35 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~   96 (159)
T cd04150          35 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNE   96 (159)
T ss_pred             ceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence            44566778899999999999999999999999999999999999999999999988887643

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=5.7e-16  Score=78.03  Aligned_cols=62  Identities=26%  Similarity=0.509  Sum_probs=54.8

Q ss_pred             CcEEEEE--ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            1 FNVETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         1 f~~~~~~--~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      |.++++.  +..+++++||++|+++++.+...||++++++|+|||++=..+|.-+.+|+.+|.+
T Consensus        44 fmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~  107 (213)
T KOG0095|consen   44 FMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQ  107 (213)
T ss_pred             EEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHH
Confidence            4455554  4569999999999999999999999999999999999999999999999998753

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=3.8e-16  Score=78.06  Aligned_cols=63  Identities=62%  Similarity=1.066  Sum_probs=58.7

Q ss_pred             CcEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         1 f~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ||++++..+++++++||++|+.+.+++|.-||.+.+++|||+|.+|+++..-.+..+..++++
T Consensus        52 fnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E  114 (182)
T KOG0072|consen   52 FNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQE  114 (182)
T ss_pred             cCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhcc
Confidence            799999999999999999999999999999999999999999999999988888877777654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.66  E-value=2.6e-15  Score=76.94  Aligned_cols=62  Identities=92%  Similarity=1.450  Sum_probs=55.4

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++..+....+.+.+||++|+++++..|..|+++++++++|+|++++++++++.+++.+++++
T Consensus        48 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~  109 (175)
T smart00177       48 NVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNE  109 (175)
T ss_pred             ceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhC
Confidence            34456677899999999999999999999999999999999999999999999999887653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.66  E-value=1.5e-15  Score=79.66  Aligned_cols=54  Identities=24%  Similarity=0.489  Sum_probs=50.8

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+++||++|++.+..++..++++++++|+|||+++++||+++..|+.++.+
T Consensus        52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~  105 (202)
T cd04102          52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALN  105 (202)
T ss_pred             cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00099 rab6; Provisional

Probab=99.64  E-value=7.4e-16  Score=79.32  Aligned_cols=57  Identities=25%  Similarity=0.531  Sum_probs=51.7

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++..+.+.+||++|+++++..+..++++++++|+|||++++++|+++..|+.++++.
T Consensus        25 ~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~   81 (176)
T PTZ00099         25 DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE   81 (176)
T ss_pred             CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            344588999999999999999999999999999999999999999999999888653

>cd04149 Arf6 Arf6 subfamily

Probab=99.64  E-value=4.3e-15  Score=75.76  Aligned_cols=61  Identities=79%  Similarity=1.354  Sum_probs=54.8

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +..+....+.+.+||++|+++++..|+.++++++++++|+|++++.+|+++.+++.+++++
T Consensus        45 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~  105 (168)
T cd04149          45 VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIIND  105 (168)
T ss_pred             eEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcC
Confidence            4456677899999999999999999999999999999999999999999999998887753

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.64  E-value=9.6e-16  Score=79.24  Aligned_cols=56  Identities=9%  Similarity=0.285  Sum_probs=49.9

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHhc
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRMLN   62 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~~   62 (65)
                      +...+.+++||++|++.+..+++.++++++++++|||+++++||+++ ..|+.++.+
T Consensus        49 ~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~  105 (182)
T cd04172          49 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE  105 (182)
T ss_pred             CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            44558899999999999999999999999999999999999999998 688777653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=4e-16  Score=79.22  Aligned_cols=55  Identities=22%  Similarity=0.596  Sum_probs=51.8

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      .+++++||++|+++++.+...+|+.+.|++++||+++.+||-++++|+.++..|.
T Consensus        66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA  120 (219)
T KOG0081|consen   66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA  120 (219)
T ss_pred             EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh
Confidence            3889999999999999999999999999999999999999999999999987653

>cd01875 RhoG RhoG subfamily

Probab=99.64  E-value=1.2e-15  Score=79.22  Aligned_cols=56  Identities=18%  Similarity=0.309  Sum_probs=49.1

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH-HHHHHh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD-ELHRML   61 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~-~~~~~~   61 (65)
                      +++..+.+++||++|++.++.+++.|+++++++++|||+++++||++++. |..++.
T Consensus        46 ~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~  102 (191)
T cd01875          46 VDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVC  102 (191)
T ss_pred             ECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            44455889999999999999999999999999999999999999999974 665554

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=99.63  E-value=1.1e-15  Score=78.63  Aligned_cols=56  Identities=11%  Similarity=0.287  Sum_probs=50.4

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHhc
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRMLN   62 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~~   62 (65)
                      ++..+.+.+||++|+++++.+++.++++++++|+|||+++++||+++ +.|+.++.+
T Consensus        45 ~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~  101 (176)
T cd04133          45 DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRH  101 (176)
T ss_pred             CCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            44558899999999999999999999999999999999999999998 688887753

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.63  E-value=7e-15  Score=75.85  Aligned_cols=62  Identities=81%  Similarity=1.376  Sum_probs=55.6

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++..++..++.+.+||++|++.++..|..++++++++|+|+|++++++|+++.+++.+++++
T Consensus        52 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~  113 (182)
T PTZ00133         52 NVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSE  113 (182)
T ss_pred             ceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhC
Confidence            34567778899999999999999999999999999999999999999999999888887653

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.63  E-value=9.9e-15  Score=74.16  Aligned_cols=60  Identities=37%  Similarity=0.765  Sum_probs=54.8

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...++.+.+.+.+||++|++.++..|..++++++++++|+|++++.+|..++.|+.++++
T Consensus        36 ~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~   95 (164)
T cd04162          36 SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQ   95 (164)
T ss_pred             eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            345677889999999999999999999999999999999999999999999999888764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.62  E-value=2.6e-15  Score=78.64  Aligned_cols=55  Identities=25%  Similarity=0.400  Sum_probs=50.9

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+.+||++|++.++.++..|+++++++++|||++++.+|.+++.|+.++.+
T Consensus        41 ~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~   95 (200)
T smart00176       41 RGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR   95 (200)
T ss_pred             CEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence            3468899999999999999999999999999999999999999999999888864

Ran is involved in the active transport of proteins through nuclear pores.

>cd04131 Rnd Rnd subfamily

Probab=99.61  E-value=2.1e-15  Score=77.68  Aligned_cols=56  Identities=9%  Similarity=0.288  Sum_probs=49.6

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHhc
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRMLN   62 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~~   62 (65)
                      +...+.+.+||++|++.+...++.++++++++++|||+++++||+++ +.|+.++.+
T Consensus        45 ~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~  101 (178)
T cd04131          45 DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQE  101 (178)
T ss_pred             CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHH
Confidence            44558899999999999999999999999999999999999999996 788777653

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.61  E-value=1.3e-14  Score=73.82  Aligned_cols=62  Identities=31%  Similarity=0.715  Sum_probs=55.9

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +..++...+..+.+||++|+..++..|..|+++++++++|+|++++++|++++.++..++++
T Consensus        34 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~   95 (167)
T cd04161          34 TPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQH   95 (167)
T ss_pred             eEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcC
Confidence            34566777899999999999999999999999999999999999999999999999988754

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.60  E-value=4e-15  Score=79.44  Aligned_cols=56  Identities=11%  Similarity=0.350  Sum_probs=49.7

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHhc
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRMLN   62 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~~   62 (65)
                      ++..+.+.+||++|++.+..+++.|+++++++++|||++++++|+++ ..|+.++.+
T Consensus        57 ~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~  113 (232)
T cd04174          57 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMD  113 (232)
T ss_pred             CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHH
Confidence            44558899999999999999999999999999999999999999985 788877653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04158 ARD1 ARD1 subfamily

Probab=99.59  E-value=3.5e-14  Score=72.31  Aligned_cols=61  Identities=64%  Similarity=1.205  Sum_probs=55.3

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+++..++.+.+||++|+..++..|..++++++++++|+|++++++|.++..|+.+++++
T Consensus        35 ~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~   95 (169)
T cd04158          35 VETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTE   95 (169)
T ss_pred             EEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcC
Confidence            4456778899999999999999999999999999999999999999999999999988754

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00023 GTP-binding protein; Provisional

Probab=99.59  E-value=7.5e-15  Score=81.40  Aligned_cols=54  Identities=19%  Similarity=0.441  Sum_probs=50.6

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+++||++|++.++.+++.|+++++++|+|||++++++|+++.+|++++.+
T Consensus        81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~  134 (334)
T PLN00023         81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAA  134 (334)
T ss_pred             ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999999999999999998864

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.59  E-value=6.7e-15  Score=78.18  Aligned_cols=56  Identities=9%  Similarity=0.296  Sum_probs=48.2

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      +++..+.+.+||++|++.+..+++.++++++++++|||++++++|+++.++|...+
T Consensus        44 ~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~   99 (222)
T cd04173          44 IDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGET   99 (222)
T ss_pred             ECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            34456889999999999999999999999999999999999999999965444433

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=6.9e-15  Score=75.26  Aligned_cols=62  Identities=34%  Similarity=0.866  Sum_probs=57.2

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      |++++...+..+.+||++|++..+.+|..||.-++++|+++|.++++.|++.+..++.++.+
T Consensus        60 nig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~  121 (197)
T KOG0076|consen   60 NIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVEN  121 (197)
T ss_pred             eecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHH
Confidence            67777888889999999999999999999999999999999999999999999988887654

>cd04128 Spg1 Spg1p

Probab=99.58  E-value=8.5e-15  Score=75.61  Aligned_cols=54  Identities=17%  Similarity=0.458  Sum_probs=49.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++++...++.++++++++++|||++++++|.++++|+.++.+
T Consensus        47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~  100 (182)
T cd04128          47 TEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARG  100 (182)
T ss_pred             EEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999999999999999988764

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.58  E-value=3.2e-15  Score=77.08  Aligned_cols=58  Identities=17%  Similarity=0.448  Sum_probs=53.5

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++.+.+.+++||++|+++++.+...+|+++|+.++|||+++++||+.+.+|-++.+..
T Consensus        53 Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~q  110 (210)
T KOG0394|consen   53 VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQ  110 (210)
T ss_pred             EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHh
Confidence            4555689999999999999999999999999999999999999999999999998764

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.57  E-value=9.5e-15  Score=76.20  Aligned_cols=61  Identities=16%  Similarity=0.356  Sum_probs=51.8

Q ss_pred             EEE-ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcccC
Q 037770            5 TVE-YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC   65 (65)
Q Consensus         5 ~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~~   65 (65)
                      +++ ++.+.+.+||++||+.|..+++..|.++|.+|+||++.+++||+++++-|...+++-|
T Consensus        46 ~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c  107 (198)
T KOG0393|consen   46 TVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC  107 (198)
T ss_pred             EecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC
Confidence            453 7789999999999999999999999999999999999999999998755544444443

>cd04122 Rab14 Rab14 subfamily

Probab=99.56  E-value=2.1e-14  Score=72.73  Aligned_cols=54  Identities=26%  Similarity=0.534  Sum_probs=49.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.++..+..++++++++++|||++++++|+++.+|+..+.+
T Consensus        49 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~  102 (166)
T cd04122          49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN  102 (166)
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999887643

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.55  E-value=4.8e-14  Score=73.53  Aligned_cols=54  Identities=19%  Similarity=0.376  Sum_probs=49.5

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      +..+.+.+||++|++.++..+..++++++++++|||++++++|+++..|+.++.
T Consensus        47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~  100 (201)
T cd04107          47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLD  100 (201)
T ss_pred             CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999998887764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.55  E-value=2.6e-14  Score=73.31  Aligned_cols=53  Identities=9%  Similarity=0.205  Sum_probs=47.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH-HHHHHh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD-ELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~-~~~~~~   61 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|+++.+ |+.++.
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~  100 (175)
T cd01874          47 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT  100 (175)
T ss_pred             EEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999974 766654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04176 Rap2 Rap2 subgroup

Probab=99.55  E-value=3.7e-14  Score=71.52  Aligned_cols=54  Identities=15%  Similarity=0.332  Sum_probs=49.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ....+++||++|++++..++..++++++++++|||++++++|.++..|+..+.+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~  100 (163)
T cd04176          47 SPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVR  100 (163)
T ss_pred             EEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999999998887754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.54  E-value=3e-14  Score=72.78  Aligned_cols=55  Identities=27%  Similarity=0.534  Sum_probs=50.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..+.+++||++|++.+...+..++++++++++|||++++++|..+.+|+.++++.
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~  101 (170)
T cd04108          47 VPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKE  101 (170)
T ss_pred             EEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            3478999999999999999999999999999999999999999999999887654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04157 Arl6 Arl6 subfamily

Probab=99.54  E-value=1.8e-13  Score=68.79  Aligned_cols=60  Identities=55%  Similarity=0.947  Sum_probs=53.3

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +..+...++.+.+||++|+..++..|..++++++++++|+|++++.++..++.++..+++
T Consensus        37 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~   96 (162)
T cd04157          37 VESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLN   96 (162)
T ss_pred             eEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHc
Confidence            344556778999999999999999999999999999999999999999999888887765

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PTZ00369 Ras-like protein; Provisional

Probab=99.54  E-value=5.8e-14  Score=72.66  Aligned_cols=57  Identities=18%  Similarity=0.358  Sum_probs=51.0

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++...+.+.+||++|++.+..+|..++++++++++|||++++++|+++..|+..+.+
T Consensus        48 ~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~  104 (189)
T PTZ00369         48 IDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILR  104 (189)
T ss_pred             ECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            344457789999999999999999999999999999999999999999999887764

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.54  E-value=3.9e-14  Score=72.61  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=47.4

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML   61 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~   61 (65)
                      ++.+.+.+||++|++.+...++.++++++++|+|||++++++|.++. .|+..+.
T Consensus        46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~  100 (174)
T cd01871          46 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR  100 (174)
T ss_pred             CEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            34478999999999999999999999999999999999999999996 4665554

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04126 Rab20 Rab20 subfamily

Probab=99.53  E-value=1.4e-13  Score=73.10  Aligned_cols=55  Identities=16%  Similarity=0.436  Sum_probs=50.4

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+.+||++|++.+...+..++++++++|+|||++++++|.++..|+..+.+
T Consensus        41 ~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~   95 (220)
T cd04126          41 WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTD   95 (220)
T ss_pred             eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999999999999887764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2.9e-14  Score=71.46  Aligned_cols=58  Identities=24%  Similarity=0.488  Sum_probs=53.8

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      +-++.++.+++++||++|+++++.....||+++.|.+.|||++.+...+++..|+...
T Consensus        52 iievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~da  109 (215)
T KOG0097|consen   52 IIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA  109 (215)
T ss_pred             EEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhh
Confidence            4567788899999999999999999999999999999999999999999999998764

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.53  E-value=5.5e-14  Score=74.38  Aligned_cols=54  Identities=24%  Similarity=0.356  Sum_probs=50.0

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+..++..++++++++|+|||++++++|.++..|+.++.+
T Consensus        60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~  113 (219)
T PLN03071         60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR  113 (219)
T ss_pred             eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            447899999999999999999999999999999999999999999999888763

>cd04136 Rap_like Rap-like subfamily

Probab=99.53  E-value=7.3e-14  Score=70.24  Aligned_cols=54  Identities=17%  Similarity=0.393  Sum_probs=49.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++++...+..++++++++++|||++++++|+++..|++.+.+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~  100 (163)
T cd04136          47 QQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILR  100 (163)
T ss_pred             EEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999999998887754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04144 Ras2 Ras2 subfamily

Probab=99.52  E-value=6.7e-14  Score=72.46  Aligned_cols=54  Identities=17%  Similarity=0.311  Sum_probs=49.1

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++++...+..++++++++++|||++++++|+++..|+..+.+
T Consensus        45 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~   98 (190)
T cd04144          45 QPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQR   98 (190)
T ss_pred             EEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999999887753

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04154 Arl2 Arl2 subfamily

Probab=99.52  E-value=2.7e-13  Score=69.19  Aligned_cols=61  Identities=46%  Similarity=0.986  Sum_probs=54.0

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++.++......+.+||++|++.++..|..++++++++++|+|++++++|.++..++.++++
T Consensus        49 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  109 (173)
T cd04154          49 QIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQ  109 (173)
T ss_pred             ceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            3455666778999999999999999999999999999999999999999999888888764

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.52  E-value=7.1e-14  Score=71.52  Aligned_cols=55  Identities=18%  Similarity=0.335  Sum_probs=48.6

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ++..+.+.+||++|+..++.+|..++++++++++|||++++++|..+.+|+..+.
T Consensus        46 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~  100 (172)
T cd04141          46 DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLIT  100 (172)
T ss_pred             CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHH
Confidence            3344789999999999999999999999999999999999999999988765553

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04175 Rap1 Rap1 subgroup

Probab=99.52  E-value=9.3e-14  Score=70.15  Aligned_cols=54  Identities=17%  Similarity=0.392  Sum_probs=49.8

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||+++..+|+++.+|+..+.+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~  100 (164)
T cd04175          47 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILR  100 (164)
T ss_pred             EEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999888864

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04117 Rab15 Rab15 subfamily

Probab=99.51  E-value=2.7e-13  Score=68.58  Aligned_cols=53  Identities=17%  Similarity=0.470  Sum_probs=48.7

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|||++++++|+++..|+.++.+
T Consensus        48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~  100 (161)
T cd04117          48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDE  100 (161)
T ss_pred             EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999887653

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04151 Arl1 Arl1 subfamily

Probab=99.51  E-value=4.7e-13  Score=67.36  Aligned_cols=61  Identities=62%  Similarity=1.148  Sum_probs=53.3

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++..++..+..+++||++|+..++..|..++..++++++|+|++++.++....+++..+++
T Consensus        34 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~   94 (158)
T cd04151          34 NVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLE   94 (158)
T ss_pred             CeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            4556777889999999999999999999999999999999999999988887777776654

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.50  E-value=4.2e-13  Score=68.67  Aligned_cols=61  Identities=46%  Similarity=0.953  Sum_probs=54.3

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +..+....+.+.+||++|+..+...|..++++++++++|+|+++++++..+.+++.+++++
T Consensus        51 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~  111 (174)
T cd04153          51 VEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAH  111 (174)
T ss_pred             eEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            4456667889999999999999999999999999999999999999999998888887654

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04124 RabL2 RabL2 subfamily

Probab=99.49  E-value=1.8e-13  Score=69.22  Aligned_cols=55  Identities=18%  Similarity=0.384  Sum_probs=49.9

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+.+||++|++.+...+..++++++++++|+|++++.+|.++..|+..+.+
T Consensus        46 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  100 (161)
T cd04124          46 GKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELRE  100 (161)
T ss_pred             CEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999887754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04127 Rab27A Rab27a subfamily

Probab=99.49  E-value=1.1e-13  Score=70.70  Aligned_cols=53  Identities=21%  Similarity=0.618  Sum_probs=49.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|||++++++|.+++.|+..+.+
T Consensus        62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  114 (180)
T cd04127          62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQT  114 (180)
T ss_pred             EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999888754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.48  E-value=2.7e-13  Score=73.01  Aligned_cols=54  Identities=15%  Similarity=0.249  Sum_probs=49.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++..++++|+|||++++++|+++..|++++.+
T Consensus        46 ~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~   99 (247)
T cd04143          46 EVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILE   99 (247)
T ss_pred             EEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            347889999999999999999999999999999999999999999999888764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.48  E-value=2.2e-13  Score=68.91  Aligned_cols=53  Identities=25%  Similarity=0.618  Sum_probs=48.5

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+++||++|++.+...+..++++++++++|||++++++|.++.+|+..+.+
T Consensus        50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~  102 (166)
T cd01869          50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDR  102 (166)
T ss_pred             EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999887643

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04116 Rab9 Rab9 subfamily

Probab=99.48  E-value=1.9e-13  Score=69.35  Aligned_cols=55  Identities=13%  Similarity=0.397  Sum_probs=49.8

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+.+||++|++.++..+..++++++++++|||++++++|..+.+|..++++
T Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  105 (170)
T cd04116          51 GHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIY  105 (170)
T ss_pred             CeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence            3457889999999999999999999999999999999999999999999887754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04110 Rab35 Rab35 subfamily

Probab=99.48  E-value=8.1e-13  Score=68.93  Aligned_cols=53  Identities=25%  Similarity=0.617  Sum_probs=48.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|||++++++|+.+..|+.++..
T Consensus        54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~  106 (199)
T cd04110          54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQ  106 (199)
T ss_pred             EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999887754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04111 Rab39 Rab39 subfamily

Probab=99.47  E-value=2.1e-13  Score=71.81  Aligned_cols=54  Identities=28%  Similarity=0.641  Sum_probs=50.0

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      .+.+++||++|++.+...+..++++++++++|||++++++|+++.+|+.++.+.
T Consensus        51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~  104 (211)
T cd04111          51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSH  104 (211)
T ss_pred             EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999999999999999999987643

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.47  E-value=6.6e-13  Score=67.25  Aligned_cols=53  Identities=19%  Similarity=0.528  Sum_probs=49.0

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|||++++++|+++.+|+.++.+
T Consensus        49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~  101 (165)
T cd01865          49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT  101 (165)
T ss_pred             EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999888753

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04109 Rab28 Rab28 subfamily

Probab=99.47  E-value=3.1e-13  Score=71.25  Aligned_cols=53  Identities=21%  Similarity=0.429  Sum_probs=49.1

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|||++++++|+++.+|+..+.+
T Consensus        49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~  101 (215)
T cd04109          49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRK  101 (215)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999988887754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.47  E-value=1.1e-12  Score=67.74  Aligned_cols=60  Identities=37%  Similarity=0.847  Sum_probs=53.9

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++.+...++.+.+||++|+..++..|..++.+++++++|+|+++++++.....++.++++
T Consensus        53 ~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~  112 (184)
T smart00178       53 SEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLS  112 (184)
T ss_pred             eEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc
Confidence            455666788999999999999999999999999999999999999999999988888765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04134 Rho3 Rho3 subfamily

Probab=99.47  E-value=2.2e-13  Score=70.56  Aligned_cols=55  Identities=16%  Similarity=0.356  Sum_probs=48.4

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHhc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRMLN   62 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~~   62 (65)
                      +..+.+.+||++|++.+..+++.++++++++++|||++++++|+.+. .|+..+.+
T Consensus        45 ~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~  100 (189)
T cd04134          45 GLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIRE  100 (189)
T ss_pred             CEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            34478999999999999999999999999999999999999999886 57776653

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.45  E-value=2.5e-12  Score=64.52  Aligned_cols=62  Identities=79%  Similarity=1.396  Sum_probs=55.0

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++..+......+.+||++|+..+...|..++++++++++|+|+++++++.++..++..+.++
T Consensus        34 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~   95 (158)
T cd00878          34 NVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNE   95 (158)
T ss_pred             ceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence            34556667889999999999999999999999999999999999999999999998887653

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.45  E-value=4.6e-13  Score=67.40  Aligned_cols=54  Identities=22%  Similarity=0.462  Sum_probs=49.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++++++|+++..|+.++.+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~  100 (168)
T cd04119          47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQ  100 (168)
T ss_pred             eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999887754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.45  E-value=4.2e-13  Score=68.08  Aligned_cols=53  Identities=25%  Similarity=0.599  Sum_probs=48.8

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|||++++++|.++.+|+..+.+
T Consensus        51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~  103 (167)
T cd01867          51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEE  103 (167)
T ss_pred             EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999887754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.45  E-value=3.8e-13  Score=70.23  Aligned_cols=54  Identities=11%  Similarity=0.239  Sum_probs=44.9

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH-HHHHHh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD-ELHRML   61 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~-~~~~~~   61 (65)
                      +++..+.+.+||++|++.  .....++++++++++|||+++++||+++++ |+..+.
T Consensus        61 ~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~  115 (195)
T cd01873          61 VDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIR  115 (195)
T ss_pred             eCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHH
Confidence            455568999999999875  345678999999999999999999999974 766654

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01864 Rab19 Rab19 subfamily

Probab=99.45  E-value=1.1e-12  Score=66.30  Aligned_cols=52  Identities=19%  Similarity=0.518  Sum_probs=48.4

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|++.+...+..+++.++++++|+|++++.+|+.++.|+..+..
T Consensus        52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~  103 (165)
T cd01864          52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEK  103 (165)
T ss_pred             EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999999888754

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01866 Rab2 Rab2 subfamily

Probab=99.45  E-value=6.7e-13  Score=67.44  Aligned_cols=53  Identities=25%  Similarity=0.537  Sum_probs=49.1

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++++|+++.+|+.++.+
T Consensus        52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~  104 (168)
T cd01866          52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ  104 (168)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999988765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04112 Rab26 Rab26 subfamily

Probab=99.44  E-value=6.4e-13  Score=68.86  Aligned_cols=54  Identities=19%  Similarity=0.529  Sum_probs=49.1

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++++++|+++..|+..+.+
T Consensus        48 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~  101 (191)
T cd04112          48 VKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKE  101 (191)
T ss_pred             EEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            447889999999999999999999999999999999999999999998887754

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.44  E-value=2.9e-13  Score=68.12  Aligned_cols=54  Identities=22%  Similarity=0.569  Sum_probs=49.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+++||++|++.+...+..++++++++++|||+++++||+++..|+..+.+
T Consensus        46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~   99 (162)
T PF00071_consen   46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQK   99 (162)
T ss_dssp             EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            447899999999999999999999999999999999999999999999988764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04125 RabA_like RabA-like subfamily

Probab=99.44  E-value=6.2e-13  Score=68.66  Aligned_cols=54  Identities=24%  Similarity=0.558  Sum_probs=49.1

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|.++..|+.++.+
T Consensus        47 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~  100 (188)
T cd04125          47 KIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINR  100 (188)
T ss_pred             EEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            347789999999999999999999999999999999999999999999887653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.44  E-value=7.1e-13  Score=67.44  Aligned_cols=54  Identities=26%  Similarity=0.432  Sum_probs=49.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+.+||++|++.+...+..++.+++++++|||+++.++|.++..|+.++.+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  100 (166)
T cd00877          47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVR  100 (166)
T ss_pred             EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            347889999999999999999999999999999999999999999999888764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.43  E-value=1.2e-12  Score=65.57  Aligned_cols=53  Identities=15%  Similarity=0.342  Sum_probs=48.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+..++..++++++++++|||+++.++|+++..|+.++.+
T Consensus        48 ~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~  100 (162)
T cd04138          48 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKR  100 (162)
T ss_pred             EEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36688999999999999999999999999999999999999999888887764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.43  E-value=1.2e-12  Score=65.89  Aligned_cols=54  Identities=19%  Similarity=0.405  Sum_probs=49.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|+++.++|..+.+|+.++.+
T Consensus        48 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~  101 (164)
T cd04145          48 QWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILR  101 (164)
T ss_pred             EEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999999888764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.43  E-value=3.2e-12  Score=65.92  Aligned_cols=54  Identities=54%  Similarity=1.065  Sum_probs=48.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.++..|..++++++++++|+|+++++++..+..++.++.+
T Consensus        50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~  103 (183)
T cd04152          50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR  103 (183)
T ss_pred             CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            458899999999999999999999999999999999999999998888877654

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04140 ARHI_like ARHI subfamily

Probab=99.43  E-value=1.7e-12  Score=65.75  Aligned_cols=53  Identities=11%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|+++++|++.+.
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~   99 (165)
T cd04140          47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELIC   99 (165)
T ss_pred             EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            44778999999999999999999999999999999999999999998876654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.42  E-value=1.2e-12  Score=65.83  Aligned_cols=54  Identities=19%  Similarity=0.493  Sum_probs=49.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|..+..|+..+..
T Consensus        49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~  102 (162)
T cd04106          49 EDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEA  102 (162)
T ss_pred             CEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999998887653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03110 Rab GTPase; Provisional

Probab=99.42  E-value=8.6e-13  Score=69.69  Aligned_cols=54  Identities=22%  Similarity=0.519  Sum_probs=49.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+++||++|++++...+..++++++++++|||++++++|+++..|+..+.+
T Consensus        59 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~  112 (216)
T PLN03110         59 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRD  112 (216)
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999999999999999887654

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.42  E-value=7.5e-13  Score=67.53  Aligned_cols=52  Identities=12%  Similarity=0.229  Sum_probs=46.2

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~   61 (65)
                      .+.+.+||++|++.+...++.++++++++++|||++++++|+++. .|+..+.
T Consensus        47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~   99 (173)
T cd04130          47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIR   99 (173)
T ss_pred             EEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999985 5666554

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04118 Rab24 Rab24 subfamily

Probab=99.42  E-value=1.4e-12  Score=67.43  Aligned_cols=54  Identities=19%  Similarity=0.454  Sum_probs=48.6

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++++...+..++++++++++|||++++.+|+++..|+..+.+
T Consensus        48 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~  101 (193)
T cd04118          48 RVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN  101 (193)
T ss_pred             EEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            346788999999999999999999999999999999999999999888887754

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.42  E-value=2.2e-12  Score=65.04  Aligned_cols=54  Identities=19%  Similarity=0.412  Sum_probs=49.1

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|+++.+|...+.+
T Consensus        46 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~   99 (164)
T smart00173       46 EVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILR   99 (164)
T ss_pred             EEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999988877654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01868 Rab11_like Rab11-like

Probab=99.42  E-value=3.2e-12  Score=64.55  Aligned_cols=52  Identities=21%  Similarity=0.507  Sum_probs=48.4

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|+..+...+..++++++++++|||++++++|.++.+|+.++.+
T Consensus        52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  103 (165)
T cd01868          52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRD  103 (165)
T ss_pred             EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999888754

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.42  E-value=4.4e-12  Score=64.09  Aligned_cols=61  Identities=36%  Similarity=0.865  Sum_probs=53.8

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +..+...+..+.+||++|+..+...+..++.+++++++|+|+++.+++.....++.+++++
T Consensus        42 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~  102 (167)
T cd04160          42 IGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN  102 (167)
T ss_pred             eEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC
Confidence            3456667789999999999999999999999999999999999999999998888887654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.42  E-value=1.1e-12  Score=66.66  Aligned_cols=54  Identities=13%  Similarity=0.304  Sum_probs=47.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|+++. .|+..+.+
T Consensus        44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~   98 (174)
T smart00174       44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKH   98 (174)
T ss_pred             EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            4467999999999999999999999999999999999999999986 46666543

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.41  E-value=1.1e-12  Score=66.71  Aligned_cols=54  Identities=22%  Similarity=0.542  Sum_probs=47.9

Q ss_pred             CCEEEEEEECCCCcCch-hhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~-~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.++ ..+..++++++++++|||++++++|..+..|+.++.+
T Consensus        49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  103 (170)
T cd04115          49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQ  103 (170)
T ss_pred             eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence            34789999999999887 5788999999999999999999999999999887754

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.41  E-value=1.6e-12  Score=65.90  Aligned_cols=50  Identities=14%  Similarity=0.258  Sum_probs=42.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+.+.+||++|++.     ..++++++++++|||+++++||++++.|+.++.+.
T Consensus        45 ~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~   94 (158)
T cd04103          45 QSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSY   94 (158)
T ss_pred             EEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            347799999999975     34678899999999999999999999999887643

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.40  E-value=6.1e-12  Score=63.20  Aligned_cols=55  Identities=51%  Similarity=1.037  Sum_probs=50.1

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ....+.+||++|+..+...|..++.+++++++|+|++++.++.++..++.+++++
T Consensus        42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~   96 (160)
T cd04156          42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKN   96 (160)
T ss_pred             CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc
Confidence            3578999999999999999999999999999999999999999999998887654

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.40  E-value=1.5e-12  Score=67.02  Aligned_cols=52  Identities=17%  Similarity=0.357  Sum_probs=46.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH-HHHHH
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD-ELHRM   60 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~-~~~~~   60 (65)
                      ..+.+.+||++|++.+...++.++++++++++|||++++++|+++.. |+..+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~   99 (187)
T cd04132          47 KIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEV   99 (187)
T ss_pred             cEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999864 65554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.40  E-value=2.3e-12  Score=64.88  Aligned_cols=53  Identities=25%  Similarity=0.541  Sum_probs=48.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|.++..|+.++.
T Consensus        47 ~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~   99 (161)
T cd04113          47 KRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDAR   99 (161)
T ss_pred             EEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999988764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01861 Rab6 Rab6 subfamily

Probab=99.40  E-value=2.6e-12  Score=64.54  Aligned_cols=53  Identities=19%  Similarity=0.471  Sum_probs=48.7

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|+..+...+..++++++++++|||++++++|+++..|+..+..
T Consensus        48 ~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~  100 (161)
T cd01861          48 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRD  100 (161)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999888754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.39  E-value=1.6e-12  Score=65.57  Aligned_cols=54  Identities=13%  Similarity=0.350  Sum_probs=49.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+..++..+++.++++++|+|++++++|+++..|+.++.+
T Consensus        50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  103 (164)
T cd04101          50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRT  103 (164)
T ss_pred             CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            458899999999999999999999999999999999999999999999887654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03118 Rab family protein; Provisional

Probab=99.38  E-value=3.5e-12  Score=67.02  Aligned_cols=51  Identities=31%  Similarity=0.674  Sum_probs=45.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      .+.+.+||++|++.+...+..++++++++++|||++++++|.++...+...
T Consensus        61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~  111 (211)
T PLN03118         61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKE  111 (211)
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999998755443

>cd04177 RSR1 RSR1 subgroup

Probab=99.37  E-value=4.3e-12  Score=64.45  Aligned_cols=54  Identities=15%  Similarity=0.374  Sum_probs=49.1

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+++||++|++.+..++..++++++++++|||++++++|+.+..|...+.+
T Consensus        47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~  100 (168)
T cd04177          47 RQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLR  100 (168)
T ss_pred             EEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            347889999999999999999999999999999999999999999988877653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.37  E-value=3.1e-12  Score=64.36  Aligned_cols=55  Identities=22%  Similarity=0.516  Sum_probs=49.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..+.+.+||++|++++...+..++++++++++|+|.+++++|..+..|+..+.+.
T Consensus        48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  102 (163)
T cd01860          48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRN  102 (163)
T ss_pred             EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            3478899999999999999999999999999999999999999999998887654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.36  E-value=1.6e-11  Score=63.98  Aligned_cols=52  Identities=15%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|+..+...+..++.+++++++|+|+++..+|+++..|+.++.+
T Consensus        47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~   98 (198)
T cd04147          47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILE   98 (198)
T ss_pred             EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999988887764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.36  E-value=2.6e-12  Score=65.24  Aligned_cols=56  Identities=20%  Similarity=0.446  Sum_probs=50.8

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+..+.+.+||++|++++....+...+++.+++++||++++.+++.+++|..+..+
T Consensus        65 ~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~  120 (205)
T KOG1673|consen   65 RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARG  120 (205)
T ss_pred             cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhc
Confidence            44558899999999999999999999999999999999999999999999988653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.36  E-value=2.5e-11  Score=60.34  Aligned_cols=61  Identities=36%  Similarity=0.841  Sum_probs=53.3

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++..++...+.+.+||++|+..++..|..++..++++++|+|+++.+++.....++.++++
T Consensus        35 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~   95 (159)
T cd04159          35 NMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLE   95 (159)
T ss_pred             ceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHc
Confidence            3455666778999999999999999999999999999999999999999888888887654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN03108 Rab family protein; Provisional

Probab=99.35  E-value=5.6e-12  Score=66.35  Aligned_cols=54  Identities=26%  Similarity=0.534  Sum_probs=48.8

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|..+.+|+..+..
T Consensus        53 ~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~  106 (210)
T PLN03108         53 KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ  106 (210)
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHH
Confidence            447789999999999999999999999999999999999999999998877653

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.34  E-value=1.9e-11  Score=61.44  Aligned_cols=52  Identities=21%  Similarity=0.594  Sum_probs=48.1

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+||++|++.+...+..++++++++++|||++++.+++.+..|+..+..
T Consensus        49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~  100 (164)
T smart00175       49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELRE  100 (164)
T ss_pred             EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999988887654

Rab GTPases are implicated in vesicle trafficking.

>cd00879 Sar1 Sar1 subfamily

Probab=99.33  E-value=3e-11  Score=62.34  Aligned_cols=60  Identities=37%  Similarity=0.851  Sum_probs=53.3

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..++...+..+.+||++|+..++..|..++++++++++|+|+++.++|.....++.++++
T Consensus        55 ~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~  114 (190)
T cd00879          55 SEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLS  114 (190)
T ss_pred             eEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHc
Confidence            345666778999999999999999999999999999999999999999988888888765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01892 Miro2 Miro2 subfamily

Probab=99.32  E-value=1.4e-11  Score=62.84  Aligned_cols=53  Identities=13%  Similarity=0.093  Sum_probs=47.7

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      +....+.+||++|++.+...+..++++++++++|+|++++++|+.+.+|+..+
T Consensus        51 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~  103 (169)
T cd01892          51 GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKY  103 (169)
T ss_pred             CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHh
Confidence            34478899999999999999999999999999999999999999998888765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.32  E-value=1.5e-11  Score=62.22  Aligned_cols=57  Identities=16%  Similarity=0.281  Sum_probs=46.5

Q ss_pred             EEECCEEEEEEECCCCcCc-hhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            6 VEYKNISFTVWDVGGQDKI-RPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~-~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++++.+.+++||++|+... ...+..++++++++++|+|++++++|+.+..|+..+.+
T Consensus        42 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~   99 (165)
T cd04146          42 IDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIRE   99 (165)
T ss_pred             ECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3445578999999999853 44567889999999999999999999999888766543

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01863 Rab18 Rab18 subfamily

Probab=99.31  E-value=1.3e-11  Score=62.07  Aligned_cols=54  Identities=30%  Similarity=0.641  Sum_probs=48.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++++++|+.+..|+..+.+
T Consensus        47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  100 (161)
T cd01863          47 KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELET  100 (161)
T ss_pred             EEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence            347899999999999999999999999999999999999999999888877654

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01862 Rab7 Rab7 subfamily

Probab=99.31  E-value=1.3e-11  Score=62.50  Aligned_cols=54  Identities=17%  Similarity=0.389  Sum_probs=47.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++++++|++...|..+++.
T Consensus        47 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  100 (172)
T cd01862          47 KLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLI  100 (172)
T ss_pred             EEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999999888776654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04123 Rab21 Rab21 subfamily

Probab=99.30  E-value=1.9e-11  Score=61.24  Aligned_cols=54  Identities=26%  Similarity=0.578  Sum_probs=48.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|+..+...++.++++++++++|+|+++.++++....|+.++.+
T Consensus        47 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  100 (162)
T cd04123          47 KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQ  100 (162)
T ss_pred             EEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999888877653

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00066 G-alpha G protein alpha subunit

Probab=99.30  E-value=3e-11  Score=67.09  Aligned_cols=62  Identities=31%  Similarity=0.570  Sum_probs=54.1

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh----------hhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~sf~~~~~~~~~~~~~   63 (65)
                      +..++..+++.+.+||++|+...+..|..|+.+++++++|+|+++.          .++.+....++.+.++
T Consensus       152 ~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~  223 (317)
T cd00066         152 VETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS  223 (317)
T ss_pred             eEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence            3456777889999999999999999999999999999999999975          5688888888887765

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01893 Miro1 Miro1 subfamily

Probab=99.30  E-value=2.5e-11  Score=61.59  Aligned_cols=54  Identities=11%  Similarity=0.101  Sum_probs=45.5

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH-HHHHH
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD-ELHRM   60 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~-~~~~~   60 (65)
                      +...+.+.+||++|...+...+..++++++++++|+|++++++|.++.. |+..+
T Consensus        43 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i   97 (166)
T cd01893          43 TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLI   97 (166)
T ss_pred             cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            3356889999999999888888888899999999999999999999864 44443

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00275 G_alpha G protein alpha subunit

Probab=99.29  E-value=4.8e-11  Score=66.90  Aligned_cols=62  Identities=29%  Similarity=0.527  Sum_probs=54.1

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh----------hhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~sf~~~~~~~~~~~~~   63 (65)
                      +..++...++.+.+||++|+...+..|.+|+.++++++||+|+++.          .++.+....++.+.++
T Consensus       175 ~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~  246 (342)
T smart00275      175 QETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS  246 (342)
T ss_pred             EEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence            4566778889999999999999999999999999999999999974          4688888888888765

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.26  E-value=5.1e-11  Score=62.46  Aligned_cols=58  Identities=24%  Similarity=0.431  Sum_probs=52.8

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++++....+.++|++|++.+..+...|..+++|+++||+++++.||+.++.++++|++
T Consensus        45 ~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r  102 (196)
T KOG0395|consen   45 TVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILR  102 (196)
T ss_pred             EECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4555668899999999999999999999999999999999999999999999988854

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.25  E-value=2.7e-11  Score=61.65  Aligned_cols=52  Identities=15%  Similarity=0.366  Sum_probs=45.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH-HHHHH
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD-ELHRM   60 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~-~~~~~   60 (65)
                      ..+.+.+||++|++.+...+..++.+++++++|||++++++|+++.. |+..+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~   99 (175)
T cd01870          47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV   99 (175)
T ss_pred             EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            45788999999999999999889999999999999999999988864 55444

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04135 Tc10 TC10 subfamily

Probab=99.25  E-value=2.9e-11  Score=61.48  Aligned_cols=51  Identities=10%  Similarity=0.201  Sum_probs=44.6

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH-HHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD-ELHRM   60 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~-~~~~~   60 (65)
                      .+.+.+||++|++.+...+..++++++++++|||++++++|+++.. |+..+
T Consensus        47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l   98 (174)
T cd04135          47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL   98 (174)
T ss_pred             EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            4668899999999999999999999999999999999999999864 44443

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04114 Rab30 Rab30 subfamily

Probab=99.23  E-value=5.7e-11  Score=60.11  Aligned_cols=51  Identities=22%  Similarity=0.522  Sum_probs=46.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      .+.+.+||++|+..+...+..+++.++++++|+|+++.++|..+..|+.++
T Consensus        55 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l  105 (169)
T cd04114          55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI  105 (169)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            477899999999999999999999999999999999999999888887655

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.23  E-value=7.3e-11  Score=62.15  Aligned_cols=54  Identities=26%  Similarity=0.414  Sum_probs=49.2

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      .+.+.+.+||++|++.+...+..++.+++++++|||+++..+|..+..|+..+.
T Consensus        55 ~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~  108 (215)
T PTZ00132         55 CGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIV  108 (215)
T ss_pred             CeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            355889999999999999999999999999999999999999999999887765

>cd04155 Arl3 Arl3 subfamily

Probab=99.22  E-value=2.8e-10  Score=57.82  Aligned_cols=61  Identities=49%  Similarity=0.956  Sum_probs=53.0

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++..+...+..+.+||++|+..+...|..++++++++++|+|.++..++.....++..+++
T Consensus        49 ~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~  109 (173)
T cd04155          49 NIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLE  109 (173)
T ss_pred             ceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            4556777788999999999999999999999999999999999999999888888776653

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.21  E-value=1.4e-10  Score=58.21  Aligned_cols=57  Identities=14%  Similarity=0.386  Sum_probs=50.7

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +...+.+.+||++|+..+...+..+++.++++++|+|++++++|.++..|+..+...
T Consensus        44 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  100 (164)
T cd04139          44 DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRV  100 (164)
T ss_pred             CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            334578999999999999999999999999999999999999999999988877653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04148 RGK RGK subfamily

Probab=99.17  E-value=2.1e-10  Score=60.90  Aligned_cols=52  Identities=15%  Similarity=0.114  Sum_probs=43.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhh-CCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQ-NTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~-~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ....+.+||++|++  ......++. +++++++|||++++++|+.+.+|+..+.+
T Consensus        48 ~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~  100 (221)
T cd04148          48 EESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRR  100 (221)
T ss_pred             EEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            45788999999998  334456677 99999999999999999999998887654

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00154 Rab Rab family

Probab=99.17  E-value=1.9e-10  Score=57.09  Aligned_cols=53  Identities=23%  Similarity=0.577  Sum_probs=48.5

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|+..+...+..++++++++++|+|.++++++..+..|+..+..
T Consensus        48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~  100 (159)
T cd00154          48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKE  100 (159)
T ss_pred             EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999998887765

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.17  E-value=2.5e-10  Score=58.40  Aligned_cols=54  Identities=20%  Similarity=0.313  Sum_probs=49.0

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      .+.+.+||++|++.+...+..++..++++++|||+++..+++.++.++..+++.
T Consensus        48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  101 (180)
T cd04137          48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDM  101 (180)
T ss_pred             EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            356789999999999999999999999999999999999999999998887653

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04142 RRP22 RRP22 subfamily

Probab=99.17  E-value=3e-10  Score=59.47  Aligned_cols=54  Identities=15%  Similarity=0.167  Sum_probs=42.9

Q ss_pred             CCEEEEEEECCCCcCchh--------hHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRP--------LWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+.+||++|...+..        ....+++.++++++|||++++++|+.++.|++++.+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~  108 (198)
T cd04142          47 RVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILE  108 (198)
T ss_pred             EEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            347889999999754321        133457899999999999999999999999887764

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.15  E-value=1.1e-10  Score=56.28  Aligned_cols=47  Identities=23%  Similarity=0.497  Sum_probs=41.6

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL   57 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~   57 (65)
                      ..+.+||++|++.+...+...+.+++++++|||++++++|+.+.+++
T Consensus        50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~   96 (119)
T PF08477_consen   50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLL   96 (119)
T ss_dssp             EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHH
T ss_pred             eEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHH
Confidence            35889999999999888888899999999999999999999986553

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00876 Ras Ras family

Probab=99.14  E-value=3.9e-10  Score=56.32  Aligned_cols=53  Identities=21%  Similarity=0.451  Sum_probs=48.5

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|+..+...+..++..++++++|+|+++++++.++..++..+.+
T Consensus        46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~   98 (160)
T cd00876          46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILR   98 (160)
T ss_pred             EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999988887764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.11  E-value=5.5e-12  Score=65.40  Aligned_cols=54  Identities=17%  Similarity=0.458  Sum_probs=49.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .++.+.+||++|++++..+...||+++.+-++||+-+++.||+.+.+|.+++.+
T Consensus        67 Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~  120 (246)
T KOG4252|consen   67 EDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQK  120 (246)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHH
Confidence            345567899999999999999999999999999999999999999999988764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.10  E-value=1e-09  Score=57.68  Aligned_cols=54  Identities=30%  Similarity=0.471  Sum_probs=47.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCC-cEEEEEEECCCh-hhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNT-QGLIFVVDSNDR-DRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~-~~ii~v~d~~~~-~sf~~~~~~~~~~~~   62 (65)
                      ++..+.+||++|+.+++..+..+++++ +++|+|+|+++. +++..+.+++..++.
T Consensus        46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~  101 (203)
T cd04105          46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILT  101 (203)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHH
Confidence            357899999999999999999999998 999999999987 678888888777653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd00157 Rho Rho (Ras homology) family

Probab=99.09  E-value=8.1e-10  Score=55.88  Aligned_cols=52  Identities=15%  Similarity=0.376  Sum_probs=44.0

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH-HHHHH
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD-ELHRM   60 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~-~~~~~   60 (65)
                      ..+.+.+||++|+..+...+..+++.++++++|||.+++++|..... |+..+
T Consensus        46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~   98 (171)
T cd00157          46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEI   98 (171)
T ss_pred             EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            35679999999999988888888999999999999999999988754 44443

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.09  E-value=3.3e-10  Score=59.47  Aligned_cols=52  Identities=31%  Similarity=0.608  Sum_probs=43.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~   61 (65)
                      .+.+.+||++|++.++..++.|+.+++++++|+|.++..++.++ ..|..++.
T Consensus        53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~  105 (219)
T COG1100          53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELR  105 (219)
T ss_pred             EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHH
Confidence            46799999999999999999999999999999999996665555 45554443

>cd01890 LepA LepA subfamily

Probab=99.06  E-value=1.2e-09  Score=55.80  Aligned_cols=49  Identities=10%  Similarity=0.093  Sum_probs=41.2

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE   56 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~   56 (65)
                      .+.+.+.+||++|+..+...+..++++++++++|+|+++..++.....+
T Consensus        64 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~  112 (179)
T cd01890          64 GQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANF  112 (179)
T ss_pred             CCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHH
Confidence            3567899999999999999999999999999999999987655554443

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04129 Rho2 Rho2 subfamily

Probab=99.01  E-value=1.8e-09  Score=55.81  Aligned_cols=53  Identities=13%  Similarity=0.344  Sum_probs=45.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...++.++.+++++++|||+++.++|.++. .|+..+.+
T Consensus        48 ~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~  101 (187)
T cd04129          48 PVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRR  101 (187)
T ss_pred             EEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            467889999999988888778889999999999999999999997 46666643

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.91  E-value=2e-08  Score=52.22  Aligned_cols=42  Identities=19%  Similarity=0.408  Sum_probs=38.5

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+..+...+.+||++|++.+...+..++++++++++|+|+++
T Consensus        59 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~  100 (194)
T cd01891          59 AVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE  100 (194)
T ss_pred             EEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCC
Confidence            456678899999999999999999999999999999999986

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.86  E-value=1.9e-08  Score=56.72  Aligned_cols=60  Identities=28%  Similarity=0.551  Sum_probs=48.8

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhh----------HHHHHHHHHHHhccc
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR----------IVEARDELHRMLNEV   64 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s----------f~~~~~~~~~~~~~~   64 (65)
                      .+..++.++.++|++||.+.++.|.++|.+++++|||.++++.+.          ..+..+.++.|.++.
T Consensus       189 ~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~  258 (354)
T KOG0082|consen  189 EFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK  258 (354)
T ss_pred             EEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence            466788999999999999999999999999999999999987543          344456666665553

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=1e-08  Score=52.67  Aligned_cols=60  Identities=30%  Similarity=0.774  Sum_probs=54.1

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +++...++.+..+|++|+..-+..|..|+..++++++.+|.-+.++|.+.+..++.++..
T Consensus        57 E~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~  116 (193)
T KOG0077|consen   57 EELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSD  116 (193)
T ss_pred             HHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhH
Confidence            345667899999999999999999999999999999999999999999999888877654

>cd04171 SelB SelB subfamily

Probab=98.74  E-value=8.9e-08  Score=48.00  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=32.5

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +..+.+||++|++.+......++.+++++++|+|+++
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~   86 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE   86 (164)
T ss_pred             CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC
Confidence            5688999999998887666778889999999999986

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01898 Obg Obg subfamily

Probab=98.74  E-value=1.2e-07  Score=48.00  Aligned_cols=55  Identities=20%  Similarity=0.256  Sum_probs=38.6

Q ss_pred             EECCE-EEEEEECCCCcC----chhhHHhh---hhCCcEEEEEEECCCh-hhHHHHHHHHHHHh
Q 037770            7 EYKNI-SFTVWDVGGQDK----IRPLWRHY---FQNTQGLIFVVDSNDR-DRIVEARDELHRML   61 (65)
Q Consensus         7 ~~~~~-~l~~~d~~g~~~----~~~~~~~~---~~~~~~ii~v~d~~~~-~sf~~~~~~~~~~~   61 (65)
                      ...+. .+.+||++|...    .+.+...+   +..++++++|+|++++ +++..+..|.+.+.
T Consensus        43 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~  106 (170)
T cd01898          43 RVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELE  106 (170)
T ss_pred             EcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence            33444 899999999632    22223333   3469999999999998 78888877776654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=98.70  E-value=7.6e-10  Score=57.76  Aligned_cols=52  Identities=17%  Similarity=0.422  Sum_probs=48.1

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+++||++||+++..+...||+.+.+..+|||+++...|+.+.+|.+.+..
T Consensus        75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdlds  126 (229)
T KOG4423|consen   75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDS  126 (229)
T ss_pred             HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccC
Confidence            5678999999999999999999999999999999999999999999887654

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.68  E-value=1.7e-07  Score=48.71  Aligned_cols=48  Identities=19%  Similarity=0.369  Sum_probs=42.0

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHH
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHR   59 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~   59 (65)
                      ..+.+++++||++++.+|..+.+++.|+++++|.+.+..+ +....+.-
T Consensus        68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f  115 (187)
T COG2229          68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDF  115 (187)
T ss_pred             ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHH
Confidence            6789999999999999999999999999999999999888 55444443

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.66  E-value=3e-07  Score=52.45  Aligned_cols=58  Identities=31%  Similarity=0.587  Sum_probs=48.7

Q ss_pred             EEE-CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh----------hHHHHHHHHHHHhcc
Q 037770            6 VEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RIVEARDELHRMLNE   63 (65)
Q Consensus         6 ~~~-~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------sf~~~~~~~~~~~~~   63 (65)
                      +.. ++..+.++|++|+...+..|.+++.+.++||||+++++.+          ++.+....++.+.++
T Consensus       230 f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~  298 (389)
T PF00503_consen  230 FNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN  298 (389)
T ss_dssp             EEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred             EEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence            455 7889999999999999999999999999999999997543          366667777777665

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.57  E-value=9.4e-07  Score=42.98  Aligned_cols=47  Identities=30%  Similarity=0.751  Sum_probs=42.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE   56 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~   56 (65)
                      ...+.+||++|.......+..+++.++++++|+|+++..++.....+
T Consensus        44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~   90 (157)
T cd00882          44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEW   90 (157)
T ss_pred             EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHH
Confidence            57789999999999888888899999999999999999988888766

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=1e-07  Score=49.99  Aligned_cols=52  Identities=27%  Similarity=0.409  Sum_probs=47.8

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      .+++..||+.|++.+......||-++.+.|++||++.+-...++..|.+.+.
T Consensus        58 ~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~  109 (216)
T KOG0096|consen   58 QIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLV  109 (216)
T ss_pred             cEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHH
Confidence            4899999999999999999999999999999999999999999988877654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.56  E-value=8.3e-07  Score=44.72  Aligned_cols=38  Identities=21%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +..+.+||++|+..+...+..++..++++++|+|.++.
T Consensus        49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~   86 (168)
T cd01887          49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDG   86 (168)
T ss_pred             cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCC
Confidence            57899999999999999999899999999999999873

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.55  E-value=2.4e-07  Score=55.41  Aligned_cols=47  Identities=11%  Similarity=0.121  Sum_probs=39.7

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE   56 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~   56 (65)
                      .+.+.+||++|+..+...+..+++.++++++|+|+++..+......|
T Consensus        69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~  115 (595)
T TIGR01393        69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANV  115 (595)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHH
Confidence            47899999999999999999999999999999999986555444443

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.55  E-value=5.7e-07  Score=46.03  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=38.5

Q ss_pred             EEEEEEECCCCcCc-hhhHHhhhhCCcEEEEEEECCChhhHHHHH
Q 037770           11 ISFTVWDVGGQDKI-RPLWRHYFQNTQGLIFVVDSNDRDRIVEAR   54 (65)
Q Consensus        11 ~~l~~~d~~g~~~~-~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~   54 (65)
                      =.+.++|++|-... ..+-.+|+.-+||+++||+..+++||+.+.
T Consensus        60 E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~  104 (198)
T KOG3883|consen   60 EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVE  104 (198)
T ss_pred             heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHH
Confidence            46889999998887 557788999999999999999999998874

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.52  E-value=8.9e-07  Score=47.75  Aligned_cols=40  Identities=30%  Similarity=0.567  Sum_probs=31.1

Q ss_pred             CCEEEEEEECCCCcCchh-----hHHhhhhCCcEEEEEEECCChh
Q 037770            9 KNISFTVWDVGGQDKIRP-----LWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~-----~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      ..+.+++||+||+..+-.     .....++++.++|||+|+.+.+
T Consensus        46 ~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~   90 (232)
T PF04670_consen   46 SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDD   90 (232)
T ss_dssp             TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-ST
T ss_pred             CCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEccccc
Confidence            457999999999976533     3578899999999999998444

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.48  E-value=3.4e-06  Score=42.04  Aligned_cols=45  Identities=18%  Similarity=0.360  Sum_probs=34.2

Q ss_pred             EEEECCEEEEEEECCCCcCchh------hHHhhhh--CCcEEEEEEECCChhh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRP------LWRHYFQ--NTQGLIFVVDSNDRDR   49 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~------~~~~~~~--~~~~ii~v~d~~~~~s   49 (65)
                      .+...+..+.+||++|+..+..      .+..++.  +++++++|+|.+++++
T Consensus        37 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~   89 (158)
T cd01879          37 RFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLER   89 (158)
T ss_pred             EEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchh
Confidence            3444557899999999877653      3555664  8999999999987655

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.47  E-value=3.2e-06  Score=45.64  Aligned_cols=46  Identities=11%  Similarity=0.213  Sum_probs=40.0

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      ..+..++..+.+||++|+..+...+..+++.++++++|+|.++..+
T Consensus        57 ~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~  102 (237)
T cd04168          57 ASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQ  102 (237)
T ss_pred             EEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCC
Confidence            4566778899999999999998888999999999999999986543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.46  E-value=2.5e-06  Score=48.15  Aligned_cols=57  Identities=18%  Similarity=0.214  Sum_probs=41.2

Q ss_pred             EEEE-CCEEEEEEECCCCcC-------chhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            5 TVEY-KNISFTVWDVGGQDK-------IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         5 ~~~~-~~~~l~~~d~~g~~~-------~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      .+.. ....+.+||++|.-.       ....+..++..++++++|+|+++.+++++...|..++.
T Consensus       199 ~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~  263 (335)
T PRK12299        199 VVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELE  263 (335)
T ss_pred             EEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence            3444 346799999999742       22333445667999999999998878888887777664

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.43  E-value=3.8e-06  Score=42.42  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=34.1

Q ss_pred             EECCEEEEEEECCCCcCch---------hhHHhhhhCCcEEEEEEECCChhhH--HHHHHHHHHHh
Q 037770            7 EYKNISFTVWDVGGQDKIR---------PLWRHYFQNTQGLIFVVDSNDRDRI--VEARDELHRML   61 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~---------~~~~~~~~~~~~ii~v~d~~~~~sf--~~~~~~~~~~~   61 (65)
                      ...+..+.+||++|.....         ..........+++++|+|.++..++  +....|+..+.
T Consensus        43 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~  108 (168)
T cd01897          43 DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIK  108 (168)
T ss_pred             ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHH
Confidence            3355789999999974211         1111112235789999999987653  55556666554

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.43  E-value=3.7e-06  Score=41.35  Aligned_cols=50  Identities=20%  Similarity=0.320  Sum_probs=41.4

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh-hhHHHHH-HHHHHH
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR-DRIVEAR-DELHRM   60 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~-~sf~~~~-~~~~~~   60 (65)
                      ..+.+||++|+..+...+..+.+.+.+++.++|+... .++.+.. .+...+
T Consensus        50 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~  101 (161)
T TIGR00231        50 YKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEI  101 (161)
T ss_pred             EEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHH
Confidence            7889999999999999999999999999999999877 6666655 444433

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04167 Snu114p Snu114p subfamily

Probab=98.42  E-value=1.8e-06  Score=45.62  Aligned_cols=42  Identities=19%  Similarity=0.240  Sum_probs=36.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhH
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      +...+.+||++|+..+......++..++++++|+|.++..++
T Consensus        69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~  110 (213)
T cd04167          69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTS  110 (213)
T ss_pred             CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCH
Confidence            347899999999999988888899999999999999876554

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.41  E-value=1.3e-06  Score=52.46  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=37.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhH
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      +.+.+.+||++|+..+...+..++..++++++|+|.++..+.
T Consensus        72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~  113 (600)
T PRK05433         72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEA  113 (600)
T ss_pred             CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCH
Confidence            468899999999999999999999999999999999875433

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.40  E-value=1.1e-06  Score=52.64  Aligned_cols=43  Identities=16%  Similarity=0.147  Sum_probs=37.3

Q ss_pred             EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHHH
Q 037770           12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEAR   54 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~~   54 (65)
                      .+.+||++|++.+..++..++..++++++|+|+++   +++++.+.
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~  115 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN  115 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH
Confidence            38899999999999999999999999999999986   66665543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.38  E-value=4.1e-06  Score=48.80  Aligned_cols=54  Identities=13%  Similarity=0.159  Sum_probs=40.5

Q ss_pred             EEEECCEEEEEEECCCCcCchhhH--------HhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLW--------RHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~--------~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      .+...+..+.+||++|........        ..+++.++++++|+|.+++.+++..  |+..+
T Consensus       245 ~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~  306 (442)
T TIGR00450       245 DFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDL  306 (442)
T ss_pred             EEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHH
Confidence            355567788999999986654322        3578899999999999988877654  55544

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.37  E-value=2.6e-06  Score=45.66  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=36.5

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      +...+.+||++|+..+......+++.++++++|+|+++...
T Consensus        71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~  111 (222)
T cd01885          71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC  111 (222)
T ss_pred             CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC
Confidence            36889999999999999888999999999999999986543

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.35  E-value=7.8e-06  Score=41.41  Aligned_cols=56  Identities=20%  Similarity=0.226  Sum_probs=38.5

Q ss_pred             EEEC-CEEEEEEECCCCcC----chhh---HHhhhhCCcEEEEEEECCCh------hhHHHHHHHHHHHh
Q 037770            6 VEYK-NISFTVWDVGGQDK----IRPL---WRHYFQNTQGLIFVVDSNDR------DRIVEARDELHRML   61 (65)
Q Consensus         6 ~~~~-~~~l~~~d~~g~~~----~~~~---~~~~~~~~~~ii~v~d~~~~------~sf~~~~~~~~~~~   61 (65)
                      +... ...+.+||++|...    .+..   ...++++++++++|+|.++.      .++.+.+.+..++.
T Consensus        38 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~  107 (176)
T cd01881          38 VEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELK  107 (176)
T ss_pred             EEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHH
Confidence            3344 67889999999632    1222   23457789999999999987      46777666655553

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04169 RF3 RF3 subfamily

Probab=98.34  E-value=7.6e-06  Score=44.90  Aligned_cols=44  Identities=14%  Similarity=0.280  Sum_probs=37.5

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ..+..++..+.+||++|+..+.......++.++++++|+|.++.
T Consensus        64 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g  107 (267)
T cd04169          64 MQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG  107 (267)
T ss_pred             EEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC
Confidence            35677889999999999988877666788999999999999864

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.33  E-value=7.1e-06  Score=41.93  Aligned_cols=44  Identities=20%  Similarity=0.307  Sum_probs=37.6

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      +......+.+||++|...+...+..+++.++++++|+|.++..+
T Consensus        57 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~  100 (189)
T cd00881          57 FEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ  100 (189)
T ss_pred             EeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc
Confidence            34456789999999999998899999999999999999986544

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.31  E-value=1.1e-05  Score=45.50  Aligned_cols=57  Identities=18%  Similarity=0.215  Sum_probs=38.5

Q ss_pred             EEEEECC-EEEEEEECCCCcC-------chhhHHhhhhCCcEEEEEEECCCh---hhHHHHHHHHHHH
Q 037770            4 ETVEYKN-ISFTVWDVGGQDK-------IRPLWRHYFQNTQGLIFVVDSNDR---DRIVEARDELHRM   60 (65)
Q Consensus         4 ~~~~~~~-~~l~~~d~~g~~~-------~~~~~~~~~~~~~~ii~v~d~~~~---~sf~~~~~~~~~~   60 (65)
                      ..+...+ ..+.+||++|...       ....+..+...++++++|+|+++.   +.+++...|.+++
T Consensus       197 g~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL  264 (329)
T TIGR02729       197 GVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNEL  264 (329)
T ss_pred             EEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHH
Confidence            3344444 7899999999743       222333445579999999999976   5666666665554

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.26  E-value=8.6e-06  Score=48.99  Aligned_cols=55  Identities=15%  Similarity=0.317  Sum_probs=43.2

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      .+..++..+.+||++|+..+...+..+++.+|++++|+|.++- .....+.++..+
T Consensus        58 ~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a  112 (594)
T TIGR01394        58 AIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKA  112 (594)
T ss_pred             EEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHH
Confidence            4667789999999999999998889999999999999999752 233444444443

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=98.25  E-value=6e-06  Score=49.77  Aligned_cols=43  Identities=14%  Similarity=0.295  Sum_probs=38.2

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      .+..++..+.+||++|+..+...+..+++.++++++|+|+++.
T Consensus        62 ~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G  104 (607)
T PRK10218         62 AIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG  104 (607)
T ss_pred             EEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC
Confidence            3455778999999999999999999999999999999999763

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.24  E-value=1.6e-05  Score=49.21  Aligned_cols=47  Identities=23%  Similarity=0.262  Sum_probs=38.7

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHH
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVE   52 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~   52 (65)
                      +...+..+.+||++|+..|...+......+|++|+|+|.++   +++.+.
T Consensus       332 v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~  381 (787)
T PRK05306        332 VETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA  381 (787)
T ss_pred             EEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH
Confidence            34446788999999999999999989999999999999986   444443

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.19  E-value=1.1e-05  Score=48.47  Aligned_cols=48  Identities=15%  Similarity=0.101  Sum_probs=39.4

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHH
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEA   53 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~   53 (65)
                      +...+..+.+||++|++.+.......+.+++++++|+|+++   +++++++
T Consensus        45 ~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl   95 (581)
T TIGR00475        45 FPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL   95 (581)
T ss_pred             EEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH
Confidence            34455788999999999998888888899999999999987   5665554

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.18  E-value=2e-05  Score=44.79  Aligned_cols=50  Identities=20%  Similarity=0.225  Sum_probs=35.2

Q ss_pred             EEEE-CCEEEEEEECCCCcC---------chhhHHhhhhCCcEEEEEEECCChhhHHHHHH
Q 037770            5 TVEY-KNISFTVWDVGGQDK---------IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD   55 (65)
Q Consensus         5 ~~~~-~~~~l~~~d~~g~~~---------~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~   55 (65)
                      .+.. .+..+.+|||+|..+         ++..+ ..+.++|++++|+|.+++.++.+...
T Consensus       230 ~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~  289 (351)
T TIGR03156       230 RLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEA  289 (351)
T ss_pred             EEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHH
Confidence            3444 356889999999722         22222 24778999999999999887766543

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK13351 elongation factor G; Reviewed

Probab=98.18  E-value=1.5e-05  Score=48.49  Aligned_cols=48  Identities=13%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHH
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIV   51 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~   51 (65)
                      ..+...+..+.+||++|+..+...+..+++.++++++|+|.++..+..
T Consensus        66 ~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~  113 (687)
T PRK13351         66 TSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQ  113 (687)
T ss_pred             EEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHH
Confidence            345667889999999999999888899999999999999998765543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.15  E-value=2.7e-05  Score=46.89  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=32.7

Q ss_pred             EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+.+||++|++.+...+...+..+|++++|+|.++
T Consensus       136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d  170 (587)
T TIGR00487       136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD  170 (587)
T ss_pred             EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC
Confidence            78999999999999999999999999999999875

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.15  E-value=7.4e-06  Score=50.32  Aligned_cols=45  Identities=16%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHH
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEA   53 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~   53 (65)
                      ....+.+||++|++.+...+..++..++++++|+|.++   +++++.+
T Consensus       293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I  340 (742)
T CHL00189        293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI  340 (742)
T ss_pred             CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH
Confidence            35789999999999999999999999999999999876   4554443

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.14  E-value=6.2e-06  Score=47.67  Aligned_cols=45  Identities=16%  Similarity=0.134  Sum_probs=35.8

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      .+...+..+.+||++|++.+.......+..++++++|+|.++.++
T Consensus        79 ~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~  123 (426)
T TIGR00483        79 KFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF  123 (426)
T ss_pred             EEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc
Confidence            345567889999999998876555556788999999999987743

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.14  E-value=2.8e-05  Score=45.46  Aligned_cols=50  Identities=12%  Similarity=0.214  Sum_probs=37.3

Q ss_pred             EEEECCEEEEEEECCCCcCchhh--------HHhhhhCCcEEEEEEECCChhhHHHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNTQGLIFVVDSNDRDRIVEAR   54 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~--------~~~~~~~~~~ii~v~d~~~~~sf~~~~   54 (65)
                      .+...+..+.+||++|.......        ...+++.++++++|+|.+++.++++..
T Consensus       257 ~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~  314 (449)
T PRK05291        257 HINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDE  314 (449)
T ss_pred             EEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHH
Confidence            34556778999999998654321        234688999999999999887776543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.14  E-value=2.7e-05  Score=45.68  Aligned_cols=44  Identities=25%  Similarity=0.395  Sum_probs=33.9

Q ss_pred             EECCEEEEEEECCCCcC--------chhhHHhhhhCCcEEEEEEECCChhhH
Q 037770            7 EYKNISFTVWDVGGQDK--------IRPLWRHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~--------~~~~~~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      ...+..+.+||++|.+.        +...+..+++.++++++|+|+++..++
T Consensus        82 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~  133 (472)
T PRK03003         82 EWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATA  133 (472)
T ss_pred             EECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH
Confidence            34556789999999763        334456788999999999999986554

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.13  E-value=7.2e-06  Score=42.85  Aligned_cols=53  Identities=26%  Similarity=0.543  Sum_probs=40.2

Q ss_pred             EEEEEEECCCCcCchhhHHh---hhhCCcEEEEEEECCC-hhhHHHHHHHHHHHhcc
Q 037770           11 ISFTVWDVGGQDKIRPLWRH---YFQNTQGLIFVVDSND-RDRIVEARDELHRMLNE   63 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~---~~~~~~~ii~v~d~~~-~~sf~~~~~~~~~~~~~   63 (65)
                      -.+.+.|+||+.+.+.....   +...+.|||||+|.+. .....++.+.+..++.+
T Consensus        49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~  105 (181)
T PF09439_consen   49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSD  105 (181)
T ss_dssp             TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHh
Confidence            46889999999998874433   5888999999999984 45577777777777643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.12  E-value=5.3e-05  Score=43.82  Aligned_cols=44  Identities=25%  Similarity=0.372  Sum_probs=33.8

Q ss_pred             EEEECCEEEEEEECCCCcC--------chhhHHhhhhCCcEEEEEEECCChh
Q 037770            5 TVEYKNISFTVWDVGGQDK--------IRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~--------~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      .+...+..+.+||++|...        +......++..++++++|+|.++..
T Consensus        43 ~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~   94 (435)
T PRK00093         43 EAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL   94 (435)
T ss_pred             EEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC
Confidence            3445568899999999987        3334456788999999999998743

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.10  E-value=1.3e-05  Score=48.22  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=36.5

Q ss_pred             EEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHHH
Q 037770           13 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEAR   54 (65)
Q Consensus        13 l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~~   54 (65)
                      +.+||++|++.+...+...+..++++++|+|.++   ++++..+.
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~  117 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN  117 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH
Confidence            6899999999999999888899999999999987   66666553

>cd01894 EngA1 EngA1 subfamily

Probab=98.08  E-value=4.6e-05  Score=37.80  Aligned_cols=45  Identities=20%  Similarity=0.297  Sum_probs=34.0

Q ss_pred             EEEECCEEEEEEECCCCcCchh--------hHHhhhhCCcEEEEEEECCChhh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      .+...+..+.+||++|......        .+..+.+.++++++|+|..+..+
T Consensus        39 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~   91 (157)
T cd01894          39 EAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT   91 (157)
T ss_pred             EEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC
Confidence            3444567899999999988654        33457788999999999976543

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.08  E-value=2e-05  Score=46.88  Aligned_cols=45  Identities=13%  Similarity=0.258  Sum_probs=38.0

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +.++..++..+.+||++|+..+......+++.++++++|+|.++.
T Consensus        71 ~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g  115 (526)
T PRK00741         71 VMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG  115 (526)
T ss_pred             eEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC
Confidence            345677889999999999998887666788999999999999864

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.08  E-value=8e-05  Score=36.89  Aligned_cols=51  Identities=14%  Similarity=0.198  Sum_probs=36.5

Q ss_pred             EEEECCEEEEEEECCCCcCchhh--------HHhhhhCCcEEEEEEECCChhhHHHHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNTQGLIFVVDSNDRDRIVEARD   55 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~--------~~~~~~~~~~ii~v~d~~~~~sf~~~~~   55 (65)
                      .+......+.+||++|.......        ...++..++++++|+|++++.+..+.+.
T Consensus        43 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~  101 (157)
T cd04164          43 SIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEI  101 (157)
T ss_pred             EEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHH
Confidence            34445678999999997665321        2346678999999999998777655543

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.08  E-value=1.6e-05  Score=41.89  Aligned_cols=36  Identities=11%  Similarity=0.175  Sum_probs=31.7

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..+.+||++|++.+...+......++++++|+|+++
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~  118 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE  118 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC
Confidence            678999999998887777777788899999999986

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01878 HflX HflX subfamily

Probab=98.06  E-value=4.2e-05  Score=40.01  Aligned_cols=46  Identities=20%  Similarity=0.097  Sum_probs=32.5

Q ss_pred             EEEEEEECCCCcCc---------hhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH
Q 037770           11 ISFTVWDVGGQDKI---------RPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL   57 (65)
Q Consensus        11 ~~l~~~d~~g~~~~---------~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~   57 (65)
                      ..+.+||++|....         ...+ ..+..++++++|+|.+++.++.+...+.
T Consensus        89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~  143 (204)
T cd01878          89 REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVE  143 (204)
T ss_pred             ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHH
Confidence            37899999997331         1111 2366899999999999888877665443

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.05  E-value=2.2e-05  Score=41.76  Aligned_cols=43  Identities=21%  Similarity=0.274  Sum_probs=35.2

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      .+..++..+.+||++|+..+...+......++++++|+|.++.
T Consensus        71 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~  113 (219)
T cd01883          71 KFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKG  113 (219)
T ss_pred             EEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence            4556778999999999877776666667789999999999874

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.02  E-value=0.00011  Score=39.66  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             EEEECCEEEEEEECCCCcCch-------hhHHhhhhCCcEEEEEEECCChh
Q 037770            5 TVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~-------~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      .+...+..+++||++|..+..       .....++++++++++|+|+++++
T Consensus        41 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~   91 (233)
T cd01896          41 VLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE   91 (233)
T ss_pred             EEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch
Confidence            344567889999999975432       12345788999999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.01  E-value=2.2e-05  Score=41.46  Aligned_cols=41  Identities=15%  Similarity=0.134  Sum_probs=33.4

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ...+..+.+||++|+..+..........++++++|+|.++.
T Consensus        73 ~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~  113 (208)
T cd04166          73 STPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG  113 (208)
T ss_pred             ecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence            34566889999999988766566678899999999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.01  E-value=2.6e-05  Score=45.13  Aligned_cols=42  Identities=19%  Similarity=0.227  Sum_probs=33.0

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+...+..+.+||++|++.+..........++++++|+|.++
T Consensus        78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~  119 (425)
T PRK12317         78 KFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD  119 (425)
T ss_pred             EEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence            345567889999999998775544445678999999999986

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.01  E-value=6.2e-05  Score=41.89  Aligned_cols=42  Identities=31%  Similarity=0.667  Sum_probs=37.2

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +....+.|+.+|++|+...+..|-.+|.+..++|+|.+.++.
T Consensus       197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsy  238 (379)
T KOG0099|consen  197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSY  238 (379)
T ss_pred             EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccch
Confidence            444568899999999999999999999999999999988753

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.96  E-value=6.9e-05  Score=40.97  Aligned_cols=46  Identities=15%  Similarity=0.195  Sum_probs=38.4

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      ..+...+..+.+||++|...+...+...+..++++++|+|.++...
T Consensus        57 ~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~  102 (268)
T cd04170          57 APLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVE  102 (268)
T ss_pred             EEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC
Confidence            4456677889999999998887778889999999999999986543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00503 prfC peptide chain release factor 3

Probab=97.94  E-value=4.9e-05  Score=45.29  Aligned_cols=43  Identities=12%  Similarity=0.242  Sum_probs=36.4

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .++..++..+.+||++|+..+......++..++++++|+|.++
T Consensus        73 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~  115 (527)
T TIGR00503        73 MQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAK  115 (527)
T ss_pred             EEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCC
Confidence            4566778999999999998887655667899999999999986

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK15494 era GTPase Era; Provisional

Probab=97.87  E-value=0.00018  Score=40.79  Aligned_cols=42  Identities=14%  Similarity=0.232  Sum_probs=29.1

Q ss_pred             EEEECCEEEEEEECCCCcC-chhhH-------HhhhhCCcEEEEEEECCC
Q 037770            5 TVEYKNISFTVWDVGGQDK-IRPLW-------RHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~-~~~~~-------~~~~~~~~~ii~v~d~~~   46 (65)
                      .+...+..+.+||++|... +..+.       ..++.+++++++|+|.++
T Consensus        94 ~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~  143 (339)
T PRK15494         94 IITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK  143 (339)
T ss_pred             EEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC
Confidence            3455667889999999843 22211       134678999999999764

>cd01889 SelB_euk SelB subfamily

Probab=97.87  E-value=6.7e-05  Score=39.01  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=27.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ....+.+||++|+..+..........++++++|+|.++.
T Consensus        66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~  104 (192)
T cd01889          66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKG  104 (192)
T ss_pred             cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            367899999999865432222334567899999999863

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=97.86  E-value=0.00018  Score=42.27  Aligned_cols=48  Identities=10%  Similarity=0.204  Sum_probs=34.3

Q ss_pred             EEECCEEEEEEECCCCcC----------chhhH-HhhhhCCcEEEEEEECCChhhHHHH
Q 037770            6 VEYKNISFTVWDVGGQDK----------IRPLW-RHYFQNTQGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~----------~~~~~-~~~~~~~~~ii~v~d~~~~~sf~~~   53 (65)
                      +...+..+.+||++|...          +.... ..++++++++++|+|+++..++.+.
T Consensus       254 ~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~  312 (472)
T PRK03003        254 IELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ  312 (472)
T ss_pred             EEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH
Confidence            344566788999999532          22222 3457899999999999988777665

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=97.84  E-value=1.1e-05  Score=39.76  Aligned_cols=38  Identities=13%  Similarity=0.097  Sum_probs=29.0

Q ss_pred             EEEECCCCc-----CchhhHHhhhhCCcEEEEEEECCChhhHHH
Q 037770           14 TVWDVGGQD-----KIRPLWRHYFQNTQGLIFVVDSNDRDRIVE   52 (65)
Q Consensus        14 ~~~d~~g~~-----~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~   52 (65)
                      .+||++|+.     .++.... .+++++++++|+|++++.++..
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~   80 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP   80 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC
Confidence            689999973     2333333 4789999999999999988754

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.84  E-value=0.00013  Score=40.25  Aligned_cols=42  Identities=17%  Similarity=0.183  Sum_probs=36.8

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+..++..+.++|++|+..+...+..+++.++++++|+|.++
T Consensus        58 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~   99 (270)
T cd01886          58 TCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVA   99 (270)
T ss_pred             EEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCC
Confidence            445577889999999998888888899999999999999975

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=97.82  E-value=0.00035  Score=40.84  Aligned_cols=51  Identities=20%  Similarity=0.203  Sum_probs=33.9

Q ss_pred             CEEEEEEECCCCcC----chhhHHh---hhhCCcEEEEEEECCCh---hhHHHHHHHHHHH
Q 037770           10 NISFTVWDVGGQDK----IRPLWRH---YFQNTQGLIFVVDSNDR---DRIVEARDELHRM   60 (65)
Q Consensus        10 ~~~l~~~d~~g~~~----~~~~~~~---~~~~~~~ii~v~d~~~~---~sf~~~~~~~~~~   60 (65)
                      ...+.+||++|...    ...+...   +...++++++|+|+++.   +.+++...+.+++
T Consensus       205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL  265 (424)
T PRK12297        205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKEL  265 (424)
T ss_pred             CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHH
Confidence            56799999999642    1223333   34568999999999864   5566665555544

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=97.80  E-value=3.8e-05  Score=41.92  Aligned_cols=39  Identities=36%  Similarity=0.713  Sum_probs=31.4

Q ss_pred             CEEEEEEECCCCcCch-----hhHHhhhhCCcEEEEEEECCChh
Q 037770           10 NISFTVWDVGGQDKIR-----PLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~-----~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      ++.+++||++|++.+-     ......+++...+++|||++..+
T Consensus        52 nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e   95 (295)
T KOG3886|consen   52 NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESRE   95 (295)
T ss_pred             hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchh
Confidence            4678899999998532     34467899999999999998764

>PRK11058 GTPase HflX; Provisional

Probab=97.77  E-value=0.00051  Score=40.15  Aligned_cols=49  Identities=16%  Similarity=0.134  Sum_probs=33.7

Q ss_pred             EEECCE-EEEEEECCCCcCc--hhhHH------hhhhCCcEEEEEEECCChhhHHHHH
Q 037770            6 VEYKNI-SFTVWDVGGQDKI--RPLWR------HYFQNTQGLIFVVDSNDRDRIVEAR   54 (65)
Q Consensus         6 ~~~~~~-~l~~~d~~g~~~~--~~~~~------~~~~~~~~ii~v~d~~~~~sf~~~~   54 (65)
                      +...+. .+.+||++|..+.  ...+.      ...+.++++++|+|.+++.++.+..
T Consensus       239 i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~  296 (426)
T PRK11058        239 IDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIE  296 (426)
T ss_pred             EEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHH
Confidence            333333 7789999997432  22222      3467899999999999988776653

>PRK12740 elongation factor G; Reviewed

Probab=97.75  E-value=0.00024  Score=43.27  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=39.6

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhH
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      ..+..++..+.+||++|+..+...+...+..+|++++|+|.+.....
T Consensus        53 ~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~   99 (668)
T PRK12740         53 TTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEP   99 (668)
T ss_pred             EEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCH
Confidence            45566788999999999988877788889999999999999875544

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=97.69  E-value=0.00033  Score=40.48  Aligned_cols=47  Identities=11%  Similarity=0.160  Sum_probs=33.9

Q ss_pred             EECCEEEEEEECCCCcCchhhH-----------HhhhhCCcEEEEEEECCChhhHHHH
Q 037770            7 EYKNISFTVWDVGGQDKIRPLW-----------RHYFQNTQGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~-----------~~~~~~~~~ii~v~d~~~~~sf~~~   53 (65)
                      ...+..+.+||++|........           ..+++.++++++|+|.++..+..+.
T Consensus       216 ~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~  273 (429)
T TIGR03594       216 ERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL  273 (429)
T ss_pred             EECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH
Confidence            3455678999999976543321           3467899999999999987665443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.66  E-value=0.0002  Score=45.77  Aligned_cols=42  Identities=19%  Similarity=0.206  Sum_probs=35.5

Q ss_pred             EEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHHH
Q 037770           13 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEAR   54 (65)
Q Consensus        13 l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~~   54 (65)
                      +.+||++|++.+.......+..++++++|+|+++   ++++..+.
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~  572 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN  572 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH
Confidence            7899999999998888888888999999999986   56665543

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=97.65  E-value=0.00017  Score=41.70  Aligned_cols=37  Identities=14%  Similarity=0.171  Sum_probs=32.6

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ...+.+||++|++.+...+......++++++|+|.++
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~  115 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANE  115 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence            3678999999999998888777888999999999985

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.00057  Score=36.90  Aligned_cols=54  Identities=22%  Similarity=0.399  Sum_probs=41.1

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhh---CCcEEEEEEECCC-hhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQ---NTQGLIFVVDSND-RDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~---~~~~ii~v~d~~~-~~sf~~~~~~~~~~~~   62 (65)
                      ++-..++.|.||+.+.+.....+++   ++.+++||+|+.. .....++.+.+..++.
T Consensus        80 gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~  137 (238)
T KOG0090|consen   80 GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILL  137 (238)
T ss_pred             cCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHH
Confidence            3344789999999999988777888   7999999999874 3335666677766653

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.63  E-value=0.00059  Score=41.90  Aligned_cols=44  Identities=18%  Similarity=0.179  Sum_probs=37.5

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      .+...+..+.+||++|+..+...+...++.+|++++|+|.++..
T Consensus        69 ~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~  112 (689)
T TIGR00484        69 TVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV  112 (689)
T ss_pred             EEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC
Confidence            44556788999999999988878888999999999999998643

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=97.62  E-value=0.00085  Score=38.82  Aligned_cols=43  Identities=26%  Similarity=0.457  Sum_probs=32.4

Q ss_pred             EEEECCEEEEEEECCCCc--------CchhhHHhhhhCCcEEEEEEECCCh
Q 037770            5 TVEYKNISFTVWDVGGQD--------KIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~--------~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      .+...+..+.+||++|..        .+......+++.++++++|+|..+.
T Consensus        41 ~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~   91 (429)
T TIGR03594        41 DAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG   91 (429)
T ss_pred             EEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            344566789999999963        3334456678899999999999764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=97.56  E-value=0.00099  Score=40.42  Aligned_cols=44  Identities=18%  Similarity=0.369  Sum_probs=32.3

Q ss_pred             EEECCEEEEEEECCCCcCchhh------HHhhhh--CCcEEEEEEECCChhh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPL------WRHYFQ--NTQGLIFVVDSNDRDR   49 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~------~~~~~~--~~~~ii~v~d~~~~~s   49 (65)
                      +..++.++.+||++|+.++...      ...++.  .+++++.|+|.++.++
T Consensus        36 i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler   87 (591)
T TIGR00437        36 LGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER   87 (591)
T ss_pred             EEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh
Confidence            4455677899999999887543      334433  6899999999987554

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=97.55  E-value=0.0009  Score=39.96  Aligned_cols=44  Identities=25%  Similarity=0.226  Sum_probs=30.9

Q ss_pred             EEEEEECCEEEEEEECCCCcC----ch---hhHHhhhhCCcEEEEEEECCC
Q 037770            3 VETVEYKNISFTVWDVGGQDK----IR---PLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~----~~---~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +..+...+..+.+||++|...    ..   .....+...++++++|+|+++
T Consensus       198 lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~  248 (500)
T PRK12296        198 LGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCAT  248 (500)
T ss_pred             EEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcc
Confidence            445666778999999999532    11   112335677999999999985

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=97.53  E-value=0.0009  Score=41.38  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=35.6

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ++..+..+.++|++|+..+.......++.+|++++|+|..+
T Consensus        81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~  121 (720)
T TIGR00490        81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVE  121 (720)
T ss_pred             ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCC
Confidence            44567889999999999988777788999999999999875

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.50  E-value=0.00074  Score=35.08  Aligned_cols=39  Identities=26%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .....+.+.|+||+..+..........+|++|+|+|..+
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~  105 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDAND  105 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTT
T ss_pred             ccccceeecccccccceeecccceecccccceeeeeccc
Confidence            567899999999999888877888999999999999974

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00485 EF-Tu translation elongation factor TU

Probab=97.50  E-value=0.0011  Score=38.29  Aligned_cols=39  Identities=21%  Similarity=0.192  Sum_probs=30.0

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .++..+.+||++|++.|......-...+|++++|+|+..
T Consensus        72 ~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~  110 (394)
T TIGR00485        72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD  110 (394)
T ss_pred             CCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            345678999999998876544444556799999999976

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.48  E-value=0.0012  Score=40.75  Aligned_cols=39  Identities=23%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             ECCEEEEEEECCCCcC--------chhhHHhhhhCCcEEEEEEECCC
Q 037770            8 YKNISFTVWDVGGQDK--------IRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~--------~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..+..+.+||++|...        +......++..++++++|+|.++
T Consensus       320 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~  366 (712)
T PRK09518        320 WAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV  366 (712)
T ss_pred             ECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            3467899999999764        23344567889999999999975

>TIGR00436 era GTP-binding protein Era

Probab=97.47  E-value=0.0016  Score=35.77  Aligned_cols=43  Identities=19%  Similarity=0.146  Sum_probs=31.2

Q ss_pred             CCEEEEEEECCCCcCchh--------hHHhhhhCCcEEEEEEECCChhhHH
Q 037770            9 KNISFTVWDVGGQDKIRP--------LWRHYFQNTQGLIFVVDSNDRDRIV   51 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~~sf~   51 (65)
                      .+..+.+||++|......        ....++.++|++++|+|.++..+..
T Consensus        46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~   96 (270)
T TIGR00436        46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG   96 (270)
T ss_pred             CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH
Confidence            345788999999754311        1245678999999999999876653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd00880 Era_like Era (E

Probab=97.43  E-value=0.001  Score=32.57  Aligned_cols=44  Identities=25%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             CEEEEEEECCCCcCchh-------hHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770           10 NISFTVWDVGGQDKIRP-------LWRHYFQNTQGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~-------~~~~~~~~~~~ii~v~d~~~~~sf~~~   53 (65)
                      ...+.+||++|......       ....+++.++++++|+|.++..+....
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~   94 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEE   94 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH
Confidence            45789999999776543       334578899999999999987765444

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=97.38  E-value=0.00068  Score=39.41  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=27.3

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..+.+||++|+..+......-...++++++|+|+++
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~  120 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE  120 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            578999999987765443333445699999999984

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.33  E-value=0.00084  Score=40.90  Aligned_cols=44  Identities=16%  Similarity=0.117  Sum_probs=34.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEA   53 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~   53 (65)
                      +..+.+||++|++.+.........++|++++|+|.++   +++.+.+
T Consensus        50 g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl   96 (614)
T PRK10512         50 GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL   96 (614)
T ss_pred             CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH
Confidence            3568899999999886666667889999999999875   4554444

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=97.32  E-value=0.00033  Score=35.58  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=26.1

Q ss_pred             EEECCCCcCchhhH----HhhhhCCcEEEEEEECCChhhH
Q 037770           15 VWDVGGQDKIRPLW----RHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus        15 ~~d~~g~~~~~~~~----~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      +||+||.......+    ...+++++++++|+|.++.+++
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~   80 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR   80 (158)
T ss_pred             cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc
Confidence            69999973322222    2346899999999999988765

>cd01899 Ygr210 Ygr210 subfamily

Probab=97.32  E-value=0.0025  Score=36.12  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=28.4

Q ss_pred             CEEEEEEECCCC----cCchhhHHh---hhhCCcEEEEEEECCC
Q 037770           10 NISFTVWDVGGQ----DKIRPLWRH---YFQNTQGLIFVVDSND   46 (65)
Q Consensus        10 ~~~l~~~d~~g~----~~~~~~~~~---~~~~~~~ii~v~d~~~   46 (65)
                      .+.+++||++|.    ...+.+...   .+++++++++|+|++.
T Consensus        68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            378999999997    334444333   5899999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK04213 GTP-binding protein; Provisional

Probab=97.31  E-value=0.00011  Score=38.34  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=25.5

Q ss_pred             EEEEEECCC-----------CcCchhhHHhhhh-C---CcEEEEEEECCCh
Q 037770           12 SFTVWDVGG-----------QDKIRPLWRHYFQ-N---TQGLIFVVDSNDR   47 (65)
Q Consensus        12 ~l~~~d~~g-----------~~~~~~~~~~~~~-~---~~~ii~v~d~~~~   47 (65)
                      .+.+||++|           ++.++..+..++. +   ++++++|+|.++.
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~  103 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSF  103 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccc
Confidence            578999999           4566666666665 3   4677778877543

>cd04163 Era Era subfamily

Probab=97.30  E-value=0.0033  Score=31.15  Aligned_cols=39  Identities=18%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             CCEEEEEEECCCCcCchh--------hHHhhhhCCcEEEEEEECCCh
Q 037770            9 KNISFTVWDVGGQDKIRP--------LWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ....+.+||++|......        .....+..++++++|+|.++.
T Consensus        49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~   95 (168)
T cd04163          49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP   95 (168)
T ss_pred             CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc
Confidence            457788999999765432        234467889999999999876

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=97.25  E-value=0.0062  Score=30.47  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=31.6

Q ss_pred             EECCEEEEEEECCCCcCchh-----------hHHhhhhCCcEEEEEEECCChhhHHH
Q 037770            7 EYKNISFTVWDVGGQDKIRP-----------LWRHYFQNTQGLIFVVDSNDRDRIVE   52 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~-----------~~~~~~~~~~~ii~v~d~~~~~sf~~   52 (65)
                      ...+..+.+||++|......           .....+.+++++++|+|.+++.+...
T Consensus        46 ~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~  102 (174)
T cd01895          46 EYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQD  102 (174)
T ss_pred             EECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhH
Confidence            34556688999999754311           11235678999999999988766443

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.16  E-value=0.00073  Score=36.81  Aligned_cols=39  Identities=13%  Similarity=0.102  Sum_probs=33.1

Q ss_pred             cCchhhHHhhhhCCcEEEEEEECCChh-hHHHHHHHHHHH
Q 037770           22 DKIRPLWRHYFQNTQGLIFVVDSNDRD-RIVEARDELHRM   60 (65)
Q Consensus        22 ~~~~~~~~~~~~~~~~ii~v~d~~~~~-sf~~~~~~~~~~   60 (65)
                      +++..+.+.++++++++++|+|+++++ +|+.+.+|+..+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~   63 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA   63 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            566677788999999999999999877 899998888654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=97.15  E-value=0.0063  Score=35.39  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=36.8

Q ss_pred             EEECC-EEEEEEECCCCcCch-------hhHHhhhhCCcEEEEEEECC---ChhhHHHHHHHHHHHh
Q 037770            6 VEYKN-ISFTVWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSN---DRDRIVEARDELHRML   61 (65)
Q Consensus         6 ~~~~~-~~l~~~d~~g~~~~~-------~~~~~~~~~~~~ii~v~d~~---~~~sf~~~~~~~~~~~   61 (65)
                      +...+ ..+.++|+||...-.       .....+...++++++|+|++   +.+.+++...+++++.
T Consensus       201 v~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~  267 (390)
T PRK12298        201 VRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELE  267 (390)
T ss_pred             EEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHH
Confidence            33443 468999999975321       11223577899999999998   4556666666666554

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.04  E-value=0.0038  Score=38.65  Aligned_cols=48  Identities=13%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             EECCEEEEEEECCCCcC----------chhhH-HhhhhCCcEEEEEEECCChhhHHHHH
Q 037770            7 EYKNISFTVWDVGGQDK----------IRPLW-RHYFQNTQGLIFVVDSNDRDRIVEAR   54 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~----------~~~~~-~~~~~~~~~ii~v~d~~~~~sf~~~~   54 (65)
                      ...+..+.+||++|...          +.... ..+++.++++++|+|.++..++.+.+
T Consensus       494 ~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~  552 (712)
T PRK09518        494 EIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK  552 (712)
T ss_pred             EECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH
Confidence            34555678999999532          11111 23468899999999999877766553

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.02  E-value=0.0021  Score=37.87  Aligned_cols=41  Identities=17%  Similarity=0.145  Sum_probs=35.3

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +...+..+.+.|++|+..|...-......+|++|+|+|.++
T Consensus        80 ~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~  120 (447)
T PLN00043         80 FETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT  120 (447)
T ss_pred             ecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence            34456788999999999998887888899999999999976

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=97.00  E-value=0.0033  Score=37.32  Aligned_cols=40  Identities=13%  Similarity=0.160  Sum_probs=31.2

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ...+..+.++|++|+..+......-...+|++++|+|...
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~  142 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARK  142 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            3456788999999998876544445688999999999864

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=96.96  E-value=0.003  Score=36.73  Aligned_cols=40  Identities=15%  Similarity=0.161  Sum_probs=31.6

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..++..+.++|++|++.+......-...+|++++|+|...
T Consensus        76 ~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~  115 (406)
T TIGR02034        76 STDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARK  115 (406)
T ss_pred             ccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            3456788999999998886555556778999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK12736 elongation factor Tu; Reviewed

Probab=96.90  E-value=0.0071  Score=35.07  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=29.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+..+.++|++|+..+......-...+|++++|+|.+.
T Consensus        73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~  110 (394)
T PRK12736         73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD  110 (394)
T ss_pred             CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            44578899999988776544445567899999999875

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.90  E-value=0.0099  Score=34.63  Aligned_cols=46  Identities=13%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             EECCEEEEEEECCCCcCchhh----------H-HhhhhCCcEEEEEEECCChhhHHH
Q 037770            7 EYKNISFTVWDVGGQDKIRPL----------W-RHYFQNTQGLIFVVDSNDRDRIVE   52 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~----------~-~~~~~~~~~ii~v~d~~~~~sf~~   52 (65)
                      ...+..+.+||++|.......          . ..+++.++++++|+|.++..+..+
T Consensus       217 ~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~  273 (435)
T PRK00093        217 ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQD  273 (435)
T ss_pred             EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH
Confidence            345667899999996443221          1 236778999999999997655443

>PRK12739 elongation factor G; Reviewed

Probab=96.82  E-value=0.0044  Score=38.28  Aligned_cols=43  Identities=16%  Similarity=0.163  Sum_probs=36.3

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ++..++..+.++|++|+..+...+....+.+|++++|+|.++.
T Consensus        67 ~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g  109 (691)
T PRK12739         67 TCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG  109 (691)
T ss_pred             EEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC
Confidence            3455678899999999988877788889999999999998753

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=96.81  E-value=0.017  Score=36.36  Aligned_cols=44  Identities=25%  Similarity=0.364  Sum_probs=31.7

Q ss_pred             EEECCEEEEEEECCCCcCchhh----------HHhhh--hCCcEEEEEEECCChhh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPL----------WRHYF--QNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~----------~~~~~--~~~~~ii~v~d~~~~~s   49 (65)
                      ++..+..+.++|++|..++...          ...++  ..+|++++|+|.++.++
T Consensus        45 ~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler  100 (772)
T PRK09554         45 FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER  100 (772)
T ss_pred             EEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh
Confidence            4456678999999998776421          22233  37899999999988654

>cd01884 EF_Tu EF-Tu subfamily

Probab=96.71  E-value=0.0062  Score=32.16  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=31.5

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .++..+.+.|++|+..+..........++++++|+|...
T Consensus        62 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~  100 (195)
T cd01884          62 TANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD  100 (195)
T ss_pred             CCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC
Confidence            345678899999998776656667778999999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=96.67  E-value=0.0037  Score=32.18  Aligned_cols=38  Identities=18%  Similarity=0.414  Sum_probs=24.9

Q ss_pred             EEEEEECCCCcC----------chhhHHhhhhC---CcEEEEEEECCChhh
Q 037770           12 SFTVWDVGGQDK----------IRPLWRHYFQN---TQGLIFVVDSNDRDR   49 (65)
Q Consensus        12 ~l~~~d~~g~~~----------~~~~~~~~~~~---~~~ii~v~d~~~~~s   49 (65)
                      .+.+||++|...          +......+++.   .+++++|+|.++.-+
T Consensus        65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~  115 (179)
T TIGR03598        65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK  115 (179)
T ss_pred             cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC
Confidence            578999999532          22222345543   579999999987544

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00089 era GTPase Era; Reviewed

Probab=96.61  E-value=0.018  Score=31.87  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=28.6

Q ss_pred             CCEEEEEEECCCCcCch--------hhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIR--------PLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~--------~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+..+.++|++|.....        ......+..+|++++|+|.++
T Consensus        51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~   96 (292)
T PRK00089         51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADE   96 (292)
T ss_pred             CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence            44789999999975532        222346778999999999987

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=96.61  E-value=0.0089  Score=35.31  Aligned_cols=41  Identities=22%  Similarity=0.159  Sum_probs=34.2

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +...+..+.+.|++|+..|..........+|++++|+|.+.
T Consensus        80 ~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~  120 (446)
T PTZ00141         80 FETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTA  120 (446)
T ss_pred             EccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCC
Confidence            34456789999999999987777777889999999999875

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=96.47  E-value=0.0078  Score=35.87  Aligned_cols=43  Identities=14%  Similarity=0.270  Sum_probs=36.5

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   45 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~   45 (65)
                      |.+++..+..+++.|++|++.+..=.-..+..+|+.+.|+|..
T Consensus        73 VMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaA  115 (528)
T COG4108          73 VMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA  115 (528)
T ss_pred             EEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecc
Confidence            6778889999999999999998765555677889999999986

>PRK12735 elongation factor Tu; Reviewed

Probab=96.46  E-value=0.0096  Score=34.57  Aligned_cols=38  Identities=21%  Similarity=0.192  Sum_probs=29.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+..+.++|++|+..+...-..-...+|++++|+|..+
T Consensus        73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~  110 (396)
T PRK12735         73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD  110 (396)
T ss_pred             CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC
Confidence            45678899999997765544455667899999999875

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.38  E-value=0.0074  Score=31.19  Aligned_cols=40  Identities=23%  Similarity=0.444  Sum_probs=25.8

Q ss_pred             CEEEEEEECCCCc----------CchhhHHhhhhCC---cEEEEEEECCChhh
Q 037770           10 NISFTVWDVGGQD----------KIRPLWRHYFQNT---QGLIFVVDSNDRDR   49 (65)
Q Consensus        10 ~~~l~~~d~~g~~----------~~~~~~~~~~~~~---~~ii~v~d~~~~~s   49 (65)
                      ...+.+||++|..          .+......+++.+   +++++++|.+++.+
T Consensus        69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~  121 (196)
T PRK00454         69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK  121 (196)
T ss_pred             CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC
Confidence            3578899999942          2333445556554   56778888776543

>PLN03126 Elongation factor Tu; Provisional

Probab=96.38  E-value=0.014  Score=34.92  Aligned_cols=40  Identities=23%  Similarity=0.204  Sum_probs=31.4

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ...+..+.++|++|+..+-..-..-...+|++++|+|..+
T Consensus       140 ~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~  179 (478)
T PLN03126        140 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD  179 (478)
T ss_pred             ecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            3456788999999998876655555668899999999874

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=96.36  E-value=0.00029  Score=38.80  Aligned_cols=42  Identities=38%  Similarity=0.707  Sum_probs=35.9

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      +..++.+.+.|.+|+.+.+..|-+||.+...++++..++..+
T Consensus       195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYD  236 (359)
T KOG0085|consen  195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYD  236 (359)
T ss_pred             chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677889999999999999999999999999988776543

>PRK09602 translation-associated GTPase; Reviewed

Probab=96.19  E-value=0.054  Score=31.74  Aligned_cols=35  Identities=31%  Similarity=0.469  Sum_probs=26.2

Q ss_pred             EEEEEEECCCCc----CchhhHHhh---hhCCcEEEEEEECC
Q 037770           11 ISFTVWDVGGQD----KIRPLWRHY---FQNTQGLIFVVDSN   45 (65)
Q Consensus        11 ~~l~~~d~~g~~----~~~~~~~~~---~~~~~~ii~v~d~~   45 (65)
                      ..+++||++|-.    ....+...+   .++++++++|+|..
T Consensus        72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            678999999942    233333344   88999999999997

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.18  E-value=0.017  Score=35.48  Aligned_cols=40  Identities=18%  Similarity=0.138  Sum_probs=30.5

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ...+..+.++|++|++.+..........+|++++|+|...
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~  139 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARK  139 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            3455678899999998775544445678999999999864

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=95.95  E-value=0.033  Score=28.14  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             EEEEEEECCCCcC----chhhHHhhhhCCcEEEEEEECCChhh
Q 037770           11 ISFTVWDVGGQDK----IRPLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus        11 ~~l~~~d~~g~~~----~~~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      ..+.+.|+||-..    ....+..|...++++++|.+.+...+
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~  143 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT  143 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc
Confidence            4588999999744    23567788899999999999987544

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK07560 elongation factor EF-2; Reviewed

Probab=95.89  E-value=0.031  Score=34.96  Aligned_cols=38  Identities=21%  Similarity=0.244  Sum_probs=32.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+..+.+.|++|+..+........+.+|++++|+|...
T Consensus        85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~  122 (731)
T PRK07560         85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE  122 (731)
T ss_pred             CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC
Confidence            46788999999999887777778899999999999874

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=95.83  E-value=0.1  Score=26.90  Aligned_cols=46  Identities=20%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             EEEEECCEEEEEEECCCCcCch------hhHHhhh--hCCcEEEEEEECCChhh
Q 037770            4 ETVEYKNISFTVWDVGGQDKIR------PLWRHYF--QNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~------~~~~~~~--~~~~~ii~v~d~~~~~s   49 (65)
                      ..+...+-.+.+.|+||.-+..      .....+.  ...|+++.|.|.++.++
T Consensus        40 g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r   93 (156)
T PF02421_consen   40 GIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLER   93 (156)
T ss_dssp             EEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHH
T ss_pred             EEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHH
Confidence            3456677889999999954432      2334443  57999999999987654

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>CHL00071 tufA elongation factor Tu

Probab=95.80  E-value=0.038  Score=32.32  Aligned_cols=39  Identities=21%  Similarity=0.185  Sum_probs=30.8

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .++..+.+.|++|+..+..........+|++++|+|...
T Consensus        72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~  110 (409)
T CHL00071         72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD  110 (409)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            345678899999988776555566778999999999874

>cd04165 GTPBP1_like GTPBP1-like

Probab=95.77  E-value=0.065  Score=28.96  Aligned_cols=40  Identities=18%  Similarity=0.151  Sum_probs=28.8

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhh--CCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQ--NTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~--~~~~ii~v~d~~~   46 (65)
                      ..++..+.+.|++|++.+.........  .++++++|+|...
T Consensus        80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~  121 (224)
T cd04165          80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA  121 (224)
T ss_pred             eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC
Confidence            344567899999999887654333332  5789999999864

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=95.74  E-value=0.082  Score=25.21  Aligned_cols=41  Identities=27%  Similarity=0.460  Sum_probs=28.9

Q ss_pred             EEECCEEEEEEECCCCcCc----------hhhHHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKI----------RPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~----------~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +...+..+.++|++|-..-          ..... ....++++++|+|.+++
T Consensus        42 ~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~~~~   92 (116)
T PF01926_consen   42 FEYNNKKFILVDTPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDASNP   92 (116)
T ss_dssp             EEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEETTSH
T ss_pred             eeeceeeEEEEeCCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEECCCC
Confidence            4456778889999996442          12223 33789999999998774

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PLN03127 Elongation factor Tu; Provisional

Probab=95.69  E-value=0.081  Score=31.47  Aligned_cols=38  Identities=18%  Similarity=0.133  Sum_probs=29.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+..+.+.|++|+..+-.....-...+|++++|+|..+
T Consensus       122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~  159 (447)
T PLN03127        122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD  159 (447)
T ss_pred             CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCC
Confidence            45678899999998875544445567999999999864

>PRK00049 elongation factor Tu; Reviewed

Probab=95.65  E-value=0.041  Score=32.05  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=30.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ++..+.+.|++|+..+......-...+|++++|+|...
T Consensus        73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~  110 (396)
T PRK00049         73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD  110 (396)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC
Confidence            45678899999997765555556678999999999875

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=95.56  E-value=0.033  Score=35.44  Aligned_cols=43  Identities=21%  Similarity=0.151  Sum_probs=35.2

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC---ChhhHHHH
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN---DRDRIVEA   53 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~---~~~sf~~~   53 (65)
                      .-+.+.|++|+++|.+++..-...++.+|+|+|+.   .+++.+.+
T Consensus       540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi  585 (1064)
T KOG1144|consen  540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI  585 (1064)
T ss_pred             CeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH
Confidence            34678999999999999998888999999999997   45544443

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=95.50  E-value=0.041  Score=33.38  Aligned_cols=38  Identities=16%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..+.+++.||+|+..+..=-...+..+.|.++|+|.+.
T Consensus        74 ~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQ  111 (603)
T COG0481          74 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ  111 (603)
T ss_pred             CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECcc
Confidence            45889999999999987766677889999999999984

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.47  E-value=0.026  Score=31.59  Aligned_cols=37  Identities=38%  Similarity=0.701  Sum_probs=28.8

Q ss_pred             EEEEEEECCCCcCchh-h--HHhhhhCCcEEEEEEECCCh
Q 037770           11 ISFTVWDVGGQDKIRP-L--WRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~-~--~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +.+++||.+||..+-. .  ....+++.-++++|+|..+.
T Consensus        75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd  114 (347)
T KOG3887|consen   75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD  114 (347)
T ss_pred             cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH
Confidence            6789999999966432 2  26678899999999998653

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=95.44  E-value=0.054  Score=34.21  Aligned_cols=43  Identities=16%  Similarity=0.219  Sum_probs=35.3

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhH
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      ++..-+++.|++|+..+..=....++-+|++++|+|+..--.+
T Consensus       194 ~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVml  236 (971)
T KOG0468|consen  194 GKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVML  236 (971)
T ss_pred             CceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCcee
Confidence            3456789999999999988777888999999999999754433

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=95.37  E-value=0.14  Score=31.61  Aligned_cols=39  Identities=15%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ++...+++.||+|+..|..=-...+.-++|+|+|+|.+.
T Consensus       122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~q  160 (650)
T KOG0462|consen  122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQ  160 (650)
T ss_pred             CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCc
Confidence            455889999999999998877778889999999999973

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=95.26  E-value=0.025  Score=33.92  Aligned_cols=42  Identities=17%  Similarity=0.272  Sum_probs=37.4

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +++.++..+.+.|++|+..++.--..|.+--||++.|||.+.
T Consensus        96 ~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasa  137 (753)
T KOG0464|consen   96 NFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASA  137 (753)
T ss_pred             ecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccC
Confidence            456788899999999999999888999999999999999873

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=95.08  E-value=0.04  Score=35.05  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +..+.+.|++|+..+..-.....+.+|++|+|+|...
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~  133 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE  133 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC
Confidence            5678999999999987777777889999999999874

>PTZ00416 elongation factor 2; Provisional

Probab=94.91  E-value=0.061  Score=34.27  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +..+.+.|++|+..+..--....+.+|++|+|+|..+
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~  127 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE  127 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC
Confidence            5678899999998887766778889999999999875

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=94.90  E-value=0.14  Score=30.87  Aligned_cols=51  Identities=16%  Similarity=0.249  Sum_probs=35.9

Q ss_pred             EEEEEEECCCCcCchhhHHhhhh----CCcEEEEEEECCChhhH-HHHHHHHHHHh
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQ----NTQGLIFVVDSNDRDRI-VEARDELHRML   61 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~----~~~~ii~v~d~~~~~sf-~~~~~~~~~~~   61 (65)
                      ..+.+|.+.|...+..+......    ....+++|.|.+.+..+ +.+..|+.-+.
T Consensus        73 ~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~  128 (472)
T PF05783_consen   73 ARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLR  128 (472)
T ss_pred             ceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHH
Confidence            57899999987777766544333    23568889999999874 56666665443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK13768 GTPase; Provisional

Probab=94.82  E-value=0.073  Score=29.26  Aligned_cols=37  Identities=19%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             EEEEEEECCCCcCc---hhhHHhhhhC-----CcEEEEEEECCCh
Q 037770           11 ISFTVWDVGGQDKI---RPLWRHYFQN-----TQGLIFVVDSNDR   47 (65)
Q Consensus        11 ~~l~~~d~~g~~~~---~~~~~~~~~~-----~~~ii~v~d~~~~   47 (65)
                      ..+.+||++|+.+.   +..++.+.+.     .+++++++|.+..
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~  141 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLA  141 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHh
Confidence            36789999998663   4444444443     7899999999643

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=94.78  E-value=0.11  Score=30.76  Aligned_cols=41  Identities=22%  Similarity=0.247  Sum_probs=32.3

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ......+.+.|++|+..+-.---.-...+|+.|+|+|..+.
T Consensus        81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~  121 (428)
T COG5256          81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG  121 (428)
T ss_pred             ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC
Confidence            33456789999999887776655666789999999999765

>PRK00007 elongation factor G; Reviewed

Probab=94.74  E-value=0.18  Score=31.61  Aligned_cols=42  Identities=17%  Similarity=0.186  Sum_probs=32.8

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ++...+..+.+.|++|+..+..--......+|++++|+|...
T Consensus        69 ~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~  110 (693)
T PRK00007         69 TCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG  110 (693)
T ss_pred             EEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC
Confidence            345567889999999987765545566778999999999864

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=94.72  E-value=0.16  Score=25.08  Aligned_cols=36  Identities=25%  Similarity=0.501  Sum_probs=23.9

Q ss_pred             EEEEEECCCCcC----------chhhHHhhhhC---CcEEEEEEECCCh
Q 037770           12 SFTVWDVGGQDK----------IRPLWRHYFQN---TQGLIFVVDSNDR   47 (65)
Q Consensus        12 ~l~~~d~~g~~~----------~~~~~~~~~~~---~~~ii~v~d~~~~   47 (65)
                      .+.+||++|...          +......|+..   .+++++++|....
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~   94 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG   94 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC
Confidence            678999999543          33344455554   4678888888754

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=94.60  E-value=0.18  Score=31.24  Aligned_cols=56  Identities=11%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhccc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV   64 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~~   64 (65)
                      ..+...+.|++....-+.....-.+.++.+.++|+++++++.+.++..|-.+++++
T Consensus        54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~  109 (625)
T KOG1707|consen   54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQL  109 (625)
T ss_pred             CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcc
Confidence            34567889988666666665677899999999999999999999987777766554

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=94.47  E-value=0.15  Score=31.04  Aligned_cols=41  Identities=17%  Similarity=0.385  Sum_probs=35.5

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +..+++.+++.|++|+..|..=-....+=.|++++++|..+
T Consensus        63 v~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E  103 (603)
T COG1217          63 VNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE  103 (603)
T ss_pred             eecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc
Confidence            56677899999999999998777778888999999999873

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=94.38  E-value=0.34  Score=29.15  Aligned_cols=43  Identities=14%  Similarity=0.322  Sum_probs=33.7

Q ss_pred             EEEECCEEEEEEECCCCcCchhh--------HHhhhhCCcEEEEEEECCCh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~--------~~~~~~~~~~ii~v~d~~~~   47 (65)
                      .++..++.+++.||+|-+.....        .......+|.+++|+|.+.+
T Consensus       259 ~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~  309 (454)
T COG0486         259 DINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP  309 (454)
T ss_pred             EEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC
Confidence            46778899999999998765422        13457789999999999874

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=94.16  E-value=0.1  Score=27.40  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             EEEEEECCCCcCchhhH-----HhhhhCCcEEEEEE
Q 037770           12 SFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVV   42 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~~-----~~~~~~~~~ii~v~   42 (65)
                      .+.+||++|........     ...+.+++.++++.
T Consensus        53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~   88 (197)
T cd04104          53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIIS   88 (197)
T ss_pred             CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEe
Confidence            57899999976432222     22256778888874

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=94.13  E-value=0.6  Score=26.85  Aligned_cols=37  Identities=11%  Similarity=0.135  Sum_probs=24.2

Q ss_pred             CCEEEEEEECCCCcCchhhHH---hhh------hCCcEEEEEEECC
Q 037770            9 KNISFTVWDVGGQDKIRPLWR---HYF------QNTQGLIFVVDSN   45 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~---~~~------~~~~~ii~v~d~~   45 (65)
                      .+..+.++||+|.........   ...      .+.+++++|..++
T Consensus        84 ~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD  129 (313)
T TIGR00991        84 AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLD  129 (313)
T ss_pred             CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccC
Confidence            567899999999776432211   111      2588899996554

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=93.81  E-value=0.09  Score=31.87  Aligned_cols=43  Identities=21%  Similarity=0.189  Sum_probs=35.1

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVE   52 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~   52 (65)
                      .-.+.+.||||++-|..++..=..-+|.+++|++..+   +++.+.
T Consensus        54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEA   99 (509)
T COG0532          54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEA   99 (509)
T ss_pred             CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHH
Confidence            3578899999999999999887788999999999975   454433

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=93.48  E-value=0.58  Score=24.50  Aligned_cols=40  Identities=13%  Similarity=0.074  Sum_probs=27.1

Q ss_pred             EECCEEEEEEECCCCcCchh-----------hHHhhhhCCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIRP-----------LWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~-----------~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ...+..+.+.|+||-.....           .......+.+++++|.++.+
T Consensus        45 ~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~   95 (196)
T cd01852          45 VWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR   95 (196)
T ss_pred             EECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC
Confidence            34567899999999654321           11223457899999999875

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01850 CDC_Septin CDC/Septin

Probab=93.44  E-value=0.16  Score=28.29  Aligned_cols=11  Identities=36%  Similarity=0.489  Sum_probs=9.6

Q ss_pred             EEEEEEECCCC
Q 037770           11 ISFTVWDVGGQ   21 (65)
Q Consensus        11 ~~l~~~d~~g~   21 (65)
                      +.+.+||++|-
T Consensus        63 ~~l~iiDTpGf   73 (276)
T cd01850          63 LKLTVIDTPGF   73 (276)
T ss_pred             EEEEEEecCCc
Confidence            67999999994

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=93.29  E-value=0.57  Score=27.35  Aligned_cols=52  Identities=21%  Similarity=0.172  Sum_probs=34.0

Q ss_pred             EEECCEEEEEEECCCCcCch-------hhHHhhhhCCcEEEEEEECCChhh-HHHHHHHH
Q 037770            6 VEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSNDRDR-IVEARDEL   57 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~-------~~~~~~~~~~~~ii~v~d~~~~~s-f~~~~~~~   57 (65)
                      +..++..+++.|+||--.-.       ..--...++||.+++|+|+..... .+.+.+.+
T Consensus       105 l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~EL  164 (365)
T COG1163         105 LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIEREL  164 (365)
T ss_pred             EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHH
Confidence            34577889999999743221       122346778999999999986554 33333333

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=93.25  E-value=0.16  Score=30.49  Aligned_cols=35  Identities=11%  Similarity=0.177  Sum_probs=28.7

Q ss_pred             EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+.+.|++|++.+-.....-...+|++++|+|...
T Consensus       118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~  152 (460)
T PTZ00327        118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANE  152 (460)
T ss_pred             eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            67899999998876655555678899999999975

>COG3596 Predicted GTPase [General function prediction only]

Probab=93.21  E-value=0.2  Score=28.45  Aligned_cols=37  Identities=24%  Similarity=0.673  Sum_probs=29.0

Q ss_pred             EEEEEECCCCcC-------chhhHHhhhhCCcEEEEEEECCChh
Q 037770           12 SFTVWDVGGQDK-------IRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus        12 ~l~~~d~~g~~~-------~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      .+.+||++|-+.       ++.....+....+.++.+.+..++.
T Consensus        88 ~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dra  131 (296)
T COG3596          88 NLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRA  131 (296)
T ss_pred             ceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCcc
Confidence            478999999766       6666677888899888888877664

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=93.05  E-value=1  Score=26.30  Aligned_cols=55  Identities=24%  Similarity=0.326  Sum_probs=34.6

Q ss_pred             EEEECCE-EEEEEECCCCcCc-------hhhHHhhhhCCcEEEEEEECCCh---hhHHHHHHHHHH
Q 037770            5 TVEYKNI-SFTVWDVGGQDKI-------RPLWRHYFQNTQGLIFVVDSNDR---DRIVEARDELHR   59 (65)
Q Consensus         5 ~~~~~~~-~l~~~d~~g~~~~-------~~~~~~~~~~~~~ii~v~d~~~~---~sf~~~~~~~~~   59 (65)
                      ++...+. .+.+-|++|--+-       ....-.+...+..++||+|++..   .-+++++..+.+
T Consensus       237 ~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~E  302 (366)
T KOG1489|consen  237 TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEE  302 (366)
T ss_pred             eeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHH
Confidence            3333333 3888899985332       22334556679999999999988   445555544444

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=92.93  E-value=0.34  Score=22.93  Aligned_cols=28  Identities=11%  Similarity=0.050  Sum_probs=22.4

Q ss_pred             hhHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770           26 PLWRHYFQNTQGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus        26 ~~~~~~~~~~~~ii~v~d~~~~~sf~~~   53 (65)
                      .....++++.++++.||+.+++++++.+
T Consensus        38 ~~~~~~~~s~~~~~~v~~~~~~~s~~~~   65 (124)
T smart00010       38 VYDPTSYESFDVVLQCWRVDDRDSADNK   65 (124)
T ss_pred             hccccccCCCCEEEEEEEccCHHHHHHH
Confidence            3446678888999999999999988765

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=92.60  E-value=0.69  Score=29.36  Aligned_cols=42  Identities=19%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             EEEEC-CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            5 TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~-~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ++..+ +..+++.||+|+-.+-.--....+-.||++.|+|...
T Consensus        69 s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave  111 (697)
T COG0480          69 TLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE  111 (697)
T ss_pred             EEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC
Confidence            34455 4899999999999998877888899999999999874

>cd01855 YqeH YqeH

Probab=91.60  E-value=0.22  Score=25.92  Aligned_cols=25  Identities=24%  Similarity=0.117  Sum_probs=20.5

Q ss_pred             chhhHHhhhhCCcEEEEEEECCChh
Q 037770           24 IRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus        24 ~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      ++..+..++++++++++|+|+++..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~   48 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFP   48 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCC
Confidence            4667788889999999999998653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=91.25  E-value=1.4  Score=27.76  Aligned_cols=49  Identities=18%  Similarity=0.345  Sum_probs=36.3

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      +++...+.+.|.+|...     ..|...++++|+||.+-+.++|..++...-++
T Consensus        73 ~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l  121 (749)
T KOG0705|consen   73 DGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEM  121 (749)
T ss_pred             eccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhc
Confidence            44556778888887332     24677899999999999999998887655443

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=91.06  E-value=1.1  Score=27.94  Aligned_cols=41  Identities=22%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN   45 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~   45 (65)
                      .++...-.+.+.|.+|+..|..--..-...+|..++|+|.+
T Consensus       249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s  289 (603)
T KOG0458|consen  249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAS  289 (603)
T ss_pred             EEecCceeEEEecCCCccccchhhhccccccceEEEEEECC
Confidence            34455677889999998777655555556788999999986

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=90.84  E-value=0.22  Score=27.24  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             EEEEEECCCCcCchhhHHhhh--------hCCcEEEEEEECC
Q 037770           12 SFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSN   45 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~~~~~~--------~~~~~ii~v~d~~   45 (65)
                      .+.++|+|||-+.-..|....        ...-++++++|..
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~  133 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSS  133 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecc
Confidence            578999999998877665555        5667888999886

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=90.54  E-value=1  Score=27.43  Aligned_cols=53  Identities=13%  Similarity=0.286  Sum_probs=41.3

Q ss_pred             EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH-HHHhccc
Q 037770           12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL-HRMLNEV   64 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~-~~~~~~~   64 (65)
                      .+.+-.+-|+.+|...|.-.+++.+..+=+|...+..|+-...+.+ .-+++|.
T Consensus       212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTvmLRHE  265 (513)
T KOG2052|consen  212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTVMLRHE  265 (513)
T ss_pred             eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHHHhccc
Confidence            4667888999999999999999999999999999998854444443 3345553

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=89.55  E-value=2.7  Score=24.69  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=29.2

Q ss_pred             EEECCEEEEEEECCCCcCchhh------------HHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPL------------WRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~------------~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ++.+...+.++|++|--.-...            -.....++|.++.|+|+++.
T Consensus       115 ~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~t  168 (379)
T KOG1423|consen  115 ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASAT  168 (379)
T ss_pred             EecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCC
Confidence            4557788999999995432111            12345579999999999953

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=89.19  E-value=0.61  Score=29.11  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ++-.+.+.||+|+.-|..++..=-.-.|.+++|+...|
T Consensus       199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD  236 (683)
T KOG1145|consen  199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD  236 (683)
T ss_pred             CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC
Confidence            34678899999999999998887777899999997764

>COG1084 Predicted GTPase [General function prediction only]

Probab=88.78  E-value=3.3  Score=24.29  Aligned_cols=45  Identities=16%  Similarity=0.147  Sum_probs=27.9

Q ss_pred             EEEEEECCEEEEEEECCCCcCch--------hhHHhhhhC-CcEEEEEEECCCh
Q 037770            3 VETVEYKNISFTVWDVGGQDKIR--------PLWRHYFQN-TQGLIFVVDSNDR   47 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~--------~~~~~~~~~-~~~ii~v~d~~~~   47 (65)
                      |+.+..+...+++.||+|--...        ..--...++ ++.|+|++|.|..
T Consensus       207 vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~  260 (346)
T COG1084         207 VGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET  260 (346)
T ss_pred             EeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc
Confidence            45555666789999999953211        111222233 5678899999854

>cd01859 MJ1464 MJ1464

Probab=87.86  E-value=0.86  Score=22.87  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=16.7

Q ss_pred             hhhHHhhhhCCcEEEEEEECCCh
Q 037770           25 RPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus        25 ~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +.++.+..++++.+++|+|.+++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~   25 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDP   25 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCC
Confidence            44566677778888888888664

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=86.35  E-value=1.3  Score=26.33  Aligned_cols=38  Identities=16%  Similarity=0.174  Sum_probs=25.9

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEEC
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   44 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   44 (65)
                      ....-+|-+-|+||+++|-..--.=-..++..|+++|.
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA  119 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA  119 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEec
Confidence            33556788999999988764433333456777777776

>COG1159 Era GTPase [General function prediction only]

Probab=86.01  E-value=4.8  Score=23.21  Aligned_cols=40  Identities=23%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             EECCEEEEEEECCCCcCch--------hhHHhhhhCCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIR--------PLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~--------~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +..+..+-+.||||-..-+        ..-...+..+|.+++|.|.+.
T Consensus        50 t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~   97 (298)
T COG1159          50 TTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE   97 (298)
T ss_pred             EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccc
Confidence            3456788899999954322        222456678999999999986

>cd01900 YchF YchF subfamily

Probab=85.76  E-value=2.4  Score=23.92  Aligned_cols=34  Identities=15%  Similarity=0.148  Sum_probs=23.1

Q ss_pred             EEEEEECCCCcCc----hh---hHHhhhhCCcEEEEEEECC
Q 037770           12 SFTVWDVGGQDKI----RP---LWRHYFQNTQGLIFVVDSN   45 (65)
Q Consensus        12 ~l~~~d~~g~~~~----~~---~~~~~~~~~~~ii~v~d~~   45 (65)
                      .+.+.|++|-..-    ..   ..-...+.+|+++.|+|..
T Consensus        63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence            4899999995431    11   2233456799999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=85.69  E-value=2.1  Score=24.12  Aligned_cols=30  Identities=20%  Similarity=0.047  Sum_probs=23.2

Q ss_pred             hhhCCcEEEEEEECCChh-hHHHHHHHHHHH
Q 037770           31 YFQNTQGLIFVVDSNDRD-RIVEARDELHRM   60 (65)
Q Consensus        31 ~~~~~~~ii~v~d~~~~~-sf~~~~~~~~~~   60 (65)
                      ...++|.+++|+|+.++. ++..+.+|+..+
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~  105 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAA  105 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence            477899999999998887 777776666543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=85.52  E-value=6.7  Score=24.38  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=29.9

Q ss_pred             EEEECCEEEEEEECCCCcCch---------hhHHhhhhCCcEEEEEEEC
Q 037770            5 TVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNTQGLIFVVDS   44 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~---------~~~~~~~~~~~~ii~v~d~   44 (65)
                      .++..+..+.+.||+|-.+-.         ..-......+|.+++|+|.
T Consensus       310 ~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda  358 (531)
T KOG1191|consen  310 QVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDA  358 (531)
T ss_pred             EeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence            356778999999999976611         1124556789999999999

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=84.28  E-value=4.7  Score=21.57  Aligned_cols=40  Identities=15%  Similarity=0.098  Sum_probs=24.2

Q ss_pred             EECCEEEEEEECCCCcCch-----------hhHHhhhhCCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIR-----------PLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~-----------~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ...+..+.+.||||-....           ........+.+++++|+++..
T Consensus        45 ~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r   95 (212)
T PF04548_consen   45 EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR   95 (212)
T ss_dssp             EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB
T ss_pred             eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc
Confidence            4567889999999943211           111234567899999999873

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=83.22  E-value=7  Score=23.85  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=28.0

Q ss_pred             CCEEEEEEECCCCcCch---------hhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIR---------PLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~---------~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+..+.+.||+|-+...         .........+|.+|||+|.-.
T Consensus        49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~   95 (444)
T COG1160          49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGRE   95 (444)
T ss_pred             cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence            45669999999977533         233556668999999999864

>PRK09866 hypothetical protein; Provisional

Probab=82.84  E-value=11  Score=24.58  Aligned_cols=37  Identities=14%  Similarity=0.242  Sum_probs=26.8

Q ss_pred             EEEEEEECCCCcCc--h---hhHHhhhhCCcEEEEEEECCCh
Q 037770           11 ISFTVWDVGGQDKI--R---PLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus        11 ~~l~~~d~~g~~~~--~---~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ..+.+.||||-..-  .   ..-......+|.|++|+|.+..
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~  271 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL  271 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            45778999997542  1   1223467889999999999763

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=82.55  E-value=2.9  Score=24.47  Aligned_cols=38  Identities=21%  Similarity=0.192  Sum_probs=26.8

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+-++-..|++|+..|-+.--.--.+.|+.|+|++.++
T Consensus        73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~d  110 (394)
T COG0050          73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD  110 (394)
T ss_pred             CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCC
Confidence            44566788999988776544444556788888887764

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=82.26  E-value=2.5  Score=21.63  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=21.3

Q ss_pred             EEEECCCCc----CchhhHHhhhhCCcEEEEEEECCChh
Q 037770           14 TVWDVGGQD----KIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus        14 ~~~d~~g~~----~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      .+.|+||.-    .+....-.....++.++++.|.+++.
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~   77 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR   77 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC
Confidence            357888742    12222234455788888888887654

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised

Probab=81.63  E-value=4.6  Score=19.62  Aligned_cols=49  Identities=24%  Similarity=0.243  Sum_probs=28.2

Q ss_pred             EEEEECCCCcCchhhHHhhhhCCcEEEEEEECC--ChhhHHHHHHHHHHHh
Q 037770           13 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN--DRDRIVEARDELHRML   61 (65)
Q Consensus        13 l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~--~~~sf~~~~~~~~~~~   61 (65)
                      +.+||..|+..-+..-...-.++..++++.+-+  .....+++.+.+++-.
T Consensus        38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~~~~~~~~i~~Ir~~Yk~rF   88 (104)
T PF12098_consen   38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHPDTPAAEARIEAIREAYKQRF   88 (104)
T ss_pred             ceEEeccceEecCCCCcEeecccEEEEEEeCCChHHHHHHHHHHHHHHHHh
Confidence            568999998666444344444566666666433  2334555555555433

This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=81.17  E-value=8.2  Score=24.51  Aligned_cols=47  Identities=11%  Similarity=0.028  Sum_probs=29.5

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE   56 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~   56 (65)
                      +..-.+.+.|.+-. ........- ..++.+.++||++++.+|.-+...
T Consensus       471 g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v  517 (625)
T KOG1707|consen  471 GQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEV  517 (625)
T ss_pred             cccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHH
Confidence            34445566666543 222222222 678899999999999999776544

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=80.64  E-value=3.1  Score=22.12  Aligned_cols=28  Identities=11%  Similarity=0.297  Sum_probs=23.5

Q ss_pred             hCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770           33 QNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus        33 ~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      ...|-|+|++|+.+..|+..++.-+..+
T Consensus        63 prIDlIVFvinl~sk~SL~~ve~SL~~v   90 (176)
T PF11111_consen   63 PRIDLIVFVINLHSKYSLQSVEASLSHV   90 (176)
T ss_pred             ceeEEEEEEEecCCcccHHHHHHHHhhC
Confidence            3678999999999999999988766654

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=80.41  E-value=3.3  Score=20.51  Aligned_cols=9  Identities=22%  Similarity=0.394  Sum_probs=4.5

Q ss_pred             CEEEEEEEC
Q 037770           10 NISFTVWDV   18 (65)
Q Consensus        10 ~~~l~~~d~   18 (65)
                      ++-+.+.|.
T Consensus        13 D~vl~ViD~   21 (141)
T cd01857          13 DIVVQIVDA   21 (141)
T ss_pred             CEEEEEEEc
Confidence            344555554

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PTZ00258 GTP-binding protein; Provisional

Probab=80.17  E-value=10  Score=22.68  Aligned_cols=34  Identities=18%  Similarity=0.227  Sum_probs=23.6

Q ss_pred             EEEEEECCCCcCc-------hhhHHhhhhCCcEEEEEEECC
Q 037770           12 SFTVWDVGGQDKI-------RPLWRHYFQNTQGLIFVVDSN   45 (65)
Q Consensus        12 ~l~~~d~~g~~~~-------~~~~~~~~~~~~~ii~v~d~~   45 (65)
                      .+.+.|++|-..-       ........+.++++++|+|..
T Consensus        86 qi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         86 QLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            4889999995321       112233567899999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	65
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		8e-33
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		4e-29
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-29
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		5e-29
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		5e-29
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		6e-29
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		3e-28
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		5e-28
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-27
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-27
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		5e-27
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		9e-26
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		1e-25
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-25
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		6e-25
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		6e-25
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		7e-25
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		7e-25
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		8e-25
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		4e-24
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		4e-24
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		4e-24
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		5e-24
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		3e-18
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		6e-18
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		2e-17
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		4e-17
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		9e-15
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		9e-14
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		9e-14
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		9e-14
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		2e-13
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		7e-13
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		9e-13
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		1e-12
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		2e-12
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-12
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		3e-12
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-12
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		5e-12
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-12
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		5e-12
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		2e-11
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-11
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		9e-11
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-10
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		9e-10
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		8e-09
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		1e-08
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		6e-08
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		1e-07
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		2e-07
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		3e-07
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		1e-05
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		1e-05
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		2e-05
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		2e-05
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		2e-05
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		2e-05
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		2e-05
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		2e-05
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		2e-05
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		2e-05
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		2e-05
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		2e-05
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		2e-05
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		2e-05
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		2e-05
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		2e-05
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		2e-05
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		2e-05
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		2e-05
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		3e-05
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		3e-05
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		3e-05
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		3e-05
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-05
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-05
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-05
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		8e-05
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-05
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		1e-04
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		1e-04
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		1e-04
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-04
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		1e-04
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-04
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-04
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-04
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-04
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-04
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-04
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-04
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		5e-04
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-04
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		6e-04
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		6e-04
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		6e-04
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		6e-04
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		7e-04
4fmc_B	171	Espg-Rab1 Complex Length = 171		7e-04
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		7e-04
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		8e-04
4fmc_F	117	Espg-Rab1 Complex Length = 117		9e-04

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score =  135 bits (339), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 62/63 (98%), Positives = 63/63 (100%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRM
Sbjct: 54  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 113
Query: 61  LNE 63
           LNE
Sbjct: 114 LNE 116

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 60/63 (95%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RM
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 110
Query: 61  LNE 63
           L E
Sbjct: 111 LAE 113

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 60/63 (95%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHY+QNTQ +IFVVDSNDRDRI EAR+EL +M
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKM 110
Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 60/63 (95%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RM
Sbjct: 50  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 109
Query: 61  LNE 63
           L E
Sbjct: 110 LAE 112

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 60/63 (95%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RM
Sbjct: 34 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 93
Query: 61 LNE 63
          L E
Sbjct: 94 LAE 96

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  122 bits (305), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 60/63 (95%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RM
Sbjct: 199 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 258
Query: 61  LNE 63
           L E
Sbjct: 259 LAE 261

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 59/63 (93%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETVEYKNISFTVWDVGG DKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RM
Sbjct: 36 FNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 95
Query: 61 LNE 63
          L E
Sbjct: 96 LAE 98

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 54/63 (85%), Positives = 58/63 (92%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +M
Sbjct: 63  FNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM 122
Query: 61  LNE 63
           L E
Sbjct: 123 LQE 125

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 60/63 (95%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVE++NISFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDR+RI +AR+ELHRM
Sbjct: 51  FNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRM 110
Query: 61  LNE 63
           +NE
Sbjct: 111 INE 113

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score =  115 bits (289), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 54/63 (85%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR+
Sbjct: 356 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 415
Query: 61  LNE 63
           +N+
Sbjct: 416 IND 418

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score =  115 bits (289), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 56/61 (91%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+RI E  DEL +M
Sbjct: 51  FNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKM 110
Query: 61  L 61
           L
Sbjct: 111 L 111

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 58/63 (92%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR RI EAR+ + RM
Sbjct: 51  FNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRM 110
Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 58/63 (92%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFVVDSNDR RI EAR+ + RM
Sbjct: 34 FNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRM 93
Query: 61 LNE 63
          LNE
Sbjct: 94 LNE 96

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 58/63 (92%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFV+DSNDR RI EAR+ + RM
Sbjct: 51  FNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRM 110
Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 54/63 (85%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR+
Sbjct: 47  FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 106
Query: 61  LNE 63
           +N+
Sbjct: 107 IND 109

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 54/63 (85%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR+
Sbjct: 46  FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 105
Query: 61  LNE 63
           +N+
Sbjct: 106 IND 108

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score =  108 bits (270), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 54/63 (85%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR+
Sbjct: 34 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
Query: 61 LNE 63
          +N+
Sbjct: 94 IND 96

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score =  108 bits (270), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 54/63 (85%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR+
Sbjct: 34 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
Query: 61 LNE 63
          +N+
Sbjct: 94 IND 96

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score =  108 bits (270), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 54/63 (85%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR+
Sbjct: 34 FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 93
Query: 61 LNE 63
          +N+
Sbjct: 94 IND 96

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 53/63 (84%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETV YKN+ F VWDVGG DKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR+
Sbjct: 37 FNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 96
Query: 61 LNE 63
          +N+
Sbjct: 97 IND 99

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 53/63 (84%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV YKN+ F VWDVGG DKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR+
Sbjct: 47  FNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 106
Query: 61  LNE 63
           +N+
Sbjct: 107 IND 109

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 53/63 (84%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETV YKN+ F VWDVGG DKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR+
Sbjct: 36 FNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI 95
Query: 61 LNE 63
          +N+
Sbjct: 96 IND 98

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVE V+Y NISFTVWDVGGQD+IR LWRHY+ NT+G+IFVVDSNDR RI EAR+ + RM
Sbjct: 51  FNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRM 110
Query: 61  LNE 63
           LNE
Sbjct: 111 LNE 113

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVET+ YKN+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH M
Sbjct: 52  FNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLM 111
Query: 61  LNE 63
           L E
Sbjct: 112 LQE 114

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 46/63 (73%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  M
Sbjct: 36 FNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAM 95
Query: 61 LNE 63
          L E
Sbjct: 96 LEE 98

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 49/62 (79%)
Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
           N+ET++YKNISF VWD+GGQ  +RP WR YF +T  +I+VVDS DRDR+  A+ EL+ +L
Sbjct: 57  NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL 116
Query: 62  NE 63
           +E
Sbjct: 117 DE 118

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 45/63 (71%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV YKN+ F VWD+GG   IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  M
Sbjct: 38  FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAM 97
Query: 61  LNE 63
           L E
Sbjct: 98  LEE 100

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 38/50 (76%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI 50
          FNVETV YKN+ F VWD+GG   IRP WR Y+ NT  +I+VVDS DRDRI
Sbjct: 41 FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRI 90

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +
Sbjct: 52  FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
Query: 61  LNE 63
           L E
Sbjct: 112 LVE 114

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +
Sbjct: 50  FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 109
Query: 61  LNE 63
           L E
Sbjct: 110 LVE 112

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +
Sbjct: 52  FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
Query: 61  LNE 63
           L E
Sbjct: 112 LVE 114

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R  + + EL  +
Sbjct: 52  FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSL 111
Query: 61  LNE 63
           L E
Sbjct: 112 LVE 114

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FN++T+E++     +WDVGG   +R  WR+YF++T GLI+VVDS DR R+ + + EL  +
Sbjct: 35 FNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 94
Query: 61 LNE 63
          L E
Sbjct: 95 LVE 97

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 46/62 (74%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           F++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +
Sbjct: 57  FSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL 116
Query: 61  LN 62
           LN
Sbjct: 117 LN 118

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
           NVE +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML
Sbjct: 51  NVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRML 110

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVE 52
           FN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E
Sbjct: 51  FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 102

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVE 52
           FN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E
Sbjct: 50  FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 101

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVE 52
          FN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E
Sbjct: 38 FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 89

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
           NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML
Sbjct: 56  NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML 115

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
           NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML
Sbjct: 51  NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML 110

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
           NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML
Sbjct: 51  NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML 110

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML 61
           NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++ML
Sbjct: 57  NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML 116

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           +NVET E   ++FTV+D+GG  K R LW  Y+ N   +IFVVDS+D  R+   + E+  M
Sbjct: 53  YNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAM 112
Query: 61  L 61
           L
Sbjct: 113 L 113

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVE 52
          FN+++V+ +     VWD+GG  KIRP WR YF+NT  LI+V+DS DR R  E
Sbjct: 38 FNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEE 89

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 42/63 (66%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +
Sbjct: 57  FNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNL 116
Query: 61  LNE 63
           L++
Sbjct: 117 LDK 119

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 42/63 (66%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN+  +   N++  +WD+GGQ + R +W  Y +    ++++VD+ D+++I  +++ELH +
Sbjct: 57  FNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 116
Query: 61  LNE 63
           L++
Sbjct: 117 LDK 119

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 42/63 (66%)
Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN+  +   N++  +WD+GGQ + R +W  Y +    ++++VD+ D+++I  +++ELH +
Sbjct: 66  FNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 125
Query: 61  LNE 63
           L++
Sbjct: 126 LDK 128

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 4  ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62
          E +   NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  + N
Sbjct: 38 EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 96

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 4   ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 62
           E +   NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  + N
Sbjct: 60  EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 39/60 (65%)
Query: 4   ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63
           E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D  R+VE++ EL+ ++ +
Sbjct: 72  EELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTD 131

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 39/60 (65%)
Query: 4   ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63
           E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ +
Sbjct: 62  EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 121

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 39/60 (65%)
Query: 4   ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63
           E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ +
Sbjct: 59  EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 118

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 39/60 (65%)
Query: 4   ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE 63
           E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ +
Sbjct: 53  EELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 112

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 8   YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM------L 61
           +K+++F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM       
Sbjct: 193 FKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLF 252
Query: 62  NEVC 65
           N +C
Sbjct: 253 NSIC 256

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 185 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 243

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 187 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 245

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 8   YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           +K+++F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 162 FKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 214

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 159 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 217

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 184 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 242

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 184 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 242

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 156 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 214

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 160 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 218

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 158 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 216

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 155 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 213

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 184 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 242

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 161 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 219

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 159 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 217

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 153 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 211

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 156 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 214

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 154 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 212

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 154 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 212

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 161 VETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 219

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 161 VETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 219

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 154 VETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 212

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 184 VETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 242

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 9   KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD---ELHRML-NEV 64
           K ++  +WD  GQ++   L   Y++++ G I V D  D D   + ++   EL +ML NE+
Sbjct: 53  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 112
Query: 65  C 65
           C
Sbjct: 113 C 113

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 9   KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD---ELHRML-NEV 64
           K ++  +WD  GQ++   L   Y++++ G I V D  D D   + ++   EL +ML NE+
Sbjct: 67  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 126
Query: 65  C 65
           C
Sbjct: 127 C 127

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 9   KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD---ELHRML-NEV 64
           K ++  +WD  GQ++   L   Y++++ G I V D  D D   + ++   EL +ML NE+
Sbjct: 53  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 112
Query: 65  C 65
           C
Sbjct: 113 C 113

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DV GQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 185 VETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 243

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVG Q   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 184 VETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 242

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +KN+ F ++DVGGQ   R  W H F++   +IF V  +  D+++   +  +RM
Sbjct: 165 VETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRM 223

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DV GQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 185 VETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 243

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 8   YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM------L 61
           +K+++F ++DVGGQ   R  W H F+    +IF+   +  D ++   DE++RM       
Sbjct: 161 FKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLF 220
Query: 62  NEVC 65
           N +C
Sbjct: 221 NSIC 224

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1  FNVETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F + T+  E K +   +WD  GQ++ R +   Y++   G+I V D  DRD
Sbjct: 46 FKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRD 95

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 3   VET-VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           VET   +K++ F ++DVGG    R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 184 VETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 242

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
           F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 53  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 102

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F ++TVE   K +   +WD  GQ++ R +   Y++ + G+I V D  D++
Sbjct: 45 FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE 94

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F ++TVE   K +   +WD  GQ++ R +   Y++ + G+I V D  D++
Sbjct: 45 FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE 94

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 8   YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHR 59
           +K+++F  +DVGGQ   R  W H F+    +IF V  +D D ++   +E +R
Sbjct: 187 FKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNR 238

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
           F ++TVE   K +   +WD  GQ++ R +   Y++ + G+I V D  D++
Sbjct: 58  FKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQE 107

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH 58
           F + TVE   + +   +WD  GQ++ R +   Y++ T G+I V D    +  V  +  LH
Sbjct: 46  FKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLH 105
Query: 59  RMLNEVC 65
             +N+ C
Sbjct: 106 E-INQNC 111

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 1   FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH 58
           F V+T  V+       +WD  GQ++ R L   Y++  QG+I V D   RD  V    +L 
Sbjct: 52  FKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFV----KLD 107
Query: 59  RMLNEV 64
             LNE+
Sbjct: 108 NWLNEL 113

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 5  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          T++ K I   +WD  GQ+  R + R Y++   G + V D   RD
Sbjct: 53 TIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRD 96

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
           F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 70  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 119

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH 58
           F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++     +  L 
Sbjct: 46  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQ 105
Query: 59  RM 60
            +
Sbjct: 106 EI 107

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 36 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 85

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH 58
           F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++     +  L 
Sbjct: 46  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQ 105
Query: 59  RM 60
            +
Sbjct: 106 EI 107

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 43 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 92

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 45 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 94

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 43 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 92

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
           F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 62  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 111

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1   FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
           F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 53  FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 102

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 1  FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
          F + T+E   K I   +WD  GQ++ R +   Y++   G+I V D  D++
Sbjct: 35 FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQE 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	65
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-46
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-46
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-45
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-45
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-45
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-45
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-45
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	5e-45
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	6e-45
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	9e-45
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-44
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-44
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-44
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-44
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	9e-44
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-30
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-30
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-29
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-28
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	3e-19
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-17
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	6e-13
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-07
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	1e-06
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	4e-06
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	8e-06
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-04
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	2e-04

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  144 bits (365), Expect = 3e-46
 Identities = 19/63 (30%), Positives = 42/63 (66%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN+  +   N++  +WD+GGQ + R +W  Y +    ++++VD+ D+++I  +++ELH +
Sbjct: 57  FNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 116

Query: 61  LNE 63
           L++
Sbjct: 117 LDK 119

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  143 bits (363), Expect = 5e-46
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           F++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +
Sbjct: 57  FSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL 116

Query: 61  LNE 63
           LN 
Sbjct: 117 LNH 119

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  142 bits (361), Expect = 1e-45
 Identities = 32/63 (50%), Positives = 42/63 (66%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN+++V+ +     VWD+GGQ KIRP WR YF+NT  LI+V+DS DR R  E   EL  +
Sbjct: 50  FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTEL 109

Query: 61  LNE 63
           L E
Sbjct: 110 LEE 112

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  141 bits (359), Expect = 1e-45
 Identities = 38/63 (60%), Positives = 45/63 (71%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETV YKN+ F VWD+GG   IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  M
Sbjct: 41  FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAM 100

Query: 61  LNE 63
           L E
Sbjct: 101 LEE 103

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  141 bits (359), Expect = 2e-45
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
              E +   NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +
Sbjct: 57  PTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDAL 116

Query: 61  LNE 63
            N 
Sbjct: 117 FNI 119

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  140 bits (356), Expect = 4e-45
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
            NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++M
Sbjct: 55  SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 114

Query: 61  LNE 63
           L  
Sbjct: 115 LAH 117

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  140 bits (354), Expect = 5e-45
 Identities = 57/63 (90%), Positives = 60/63 (95%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RM
Sbjct: 34 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 93

Query: 61 LNE 63
          L E
Sbjct: 94 LAE 96

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  145 bits (366), Expect = 6e-45
 Identities = 57/63 (90%), Positives = 60/63 (95%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RM
Sbjct: 199 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 258

Query: 61  LNE 63
           L E
Sbjct: 259 LAE 261

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  140 bits (355), Expect = 9e-45
 Identities = 36/63 (57%), Positives = 49/63 (77%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
            N+ET++YKNISF VWD+GGQ  +RP WR YF +T  +I+VVDS DRDR+  A+ EL+ +
Sbjct: 56  VNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYAL 115

Query: 61  LNE 63
           L+E
Sbjct: 116 LDE 118

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  140 bits (354), Expect = 1e-44
 Identities = 30/63 (47%), Positives = 45/63 (71%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +
Sbjct: 52  FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111

Query: 61  LNE 63
           L E
Sbjct: 112 LVE 114

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  140 bits (354), Expect = 1e-44
 Identities = 54/63 (85%), Positives = 58/63 (92%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +M
Sbjct: 63  FNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM 122

Query: 61  LNE 63
           L E
Sbjct: 123 LQE 125

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  139 bits (352), Expect = 2e-44
 Identities = 37/63 (58%), Positives = 45/63 (71%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVET+ YKN+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH M
Sbjct: 52  FNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLM 111

Query: 61  LNE 63
           L E
Sbjct: 112 LQE 114

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  139 bits (352), Expect = 3e-44
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
            NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+RI   R+EL++M
Sbjct: 50  SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 109

Query: 61  LNE 63
           L  
Sbjct: 110 LAH 112

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  138 bits (349), Expect = 9e-44
 Identities = 18/63 (28%), Positives = 39/63 (61%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
              E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  +
Sbjct: 59  PTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSL 118

Query: 61  LNE 63
           + +
Sbjct: 119 MTD 121

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  104 bits (260), Expect = 2e-30
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----TQGLIFVVDS-NDRDRIVEARDE 56
            +   +Y     T+ D  G  K+R     Y +      +GLIF+VDS  D  ++    + 
Sbjct: 82  PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEF 141

Query: 57  LHRMLNE 63
           L  +L+ 
Sbjct: 142 LVDILSI 148

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  104 bits (261), Expect = 2e-30
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 1   FNVETVEYKN---ISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRDR-IVEARD 55
            +    +  N    S T+ D+ G + +R  L   +  + + ++FVVDS    R + +  +
Sbjct: 41  DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAE 100

Query: 56  ELHRMLNE 63
            L+++L +
Sbjct: 101 FLYQVLID 108

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  102 bits (255), Expect = 2e-29
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 2   NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQN----TQGLIFVVDS-NDRDRIVEARDE 56
            +   +Y     T+ D  G  K+R     Y +      +GLIF+VDS  D  ++    + 
Sbjct: 46  PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEF 105

Query: 57  LHRMLNE 63
           L  +L+ 
Sbjct: 106 LVDILSI 112

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 98.3 bits (245), Expect = 4e-28
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
            ++  V+     F ++ V GQ       +   +   G++FV DS   +R+    + +  M
Sbjct: 64  LDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNM 122

Query: 61  LNEV 64
              +
Sbjct: 123 RENL 126

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score = 76.2 bits (187), Expect = 3e-19
 Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 8   YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR--IVEARDELHRMLNE 63
           +   +      G +  + P  +   +   G I+V ++    R    +    +  M + 
Sbjct: 99  FSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP 156

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 70.8 bits (173), Expect = 2e-17
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 1   FNVETVEYK-NISFTVWDVGGQDKIRPLW---RHYFQNTQGLIFVVDSNDRDRIVEARDE 56
              + +     ++F +WD  GQ             F+ T  LI+V+D+ D     EA   
Sbjct: 58  IYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM--EALTR 115

Query: 57  LHRMLNE 63
           LH  +++
Sbjct: 116 LHITVSK 122

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 64.4 bits (156), Expect = 2e-14
 Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 17  DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR--IVEARDELHRMLNE 63
             G +  + P  +   +   G I+V ++    R    +    +  M + 
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP 241

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 60.0 bits (145), Expect = 6e-13
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 1   FNVETVEY-KNISFTVWDVGGQDK-----IRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR 54
                + +  N++  +WD GGQD            H FQ  Q LI V D    + + +  
Sbjct: 41  VEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVL-KDI 99

Query: 55  DELHRMLNE 63
           +   + L +
Sbjct: 100 EIFAKALKQ 108

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 43.9 bits (103), Expect = 4e-07
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 2   NVETVEYKN-ISFTVWDVGGQDKIRPLW---RHYFQNTQGLIFVVDSNDRDRIVEARDEL 57
           N     +   I   V ++ GQ             F++   L++V+DS D      A   L
Sbjct: 36  NPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYI--NAITNL 93

Query: 58  HRMLNEV 64
             ++   
Sbjct: 94  AMIIEYA 100

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 42.4 bits (99), Expect = 1e-06
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 7   EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           E KN+ F + DVGGQ   R  W   F +   ++F+V S++ D+++    + +R+
Sbjct: 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRL 250

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 40.8 bits (95), Expect = 4e-06
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 7   EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
            +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 189 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 242

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 40.2 bits (93), Expect = 8e-06
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 7   EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           +   ++F ++DVGGQ   R  W   F +   +IFVV S+  + ++   ++ +R+
Sbjct: 213 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL 266

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 17/44 (38%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 48
                 I F VWD  GQ+K   L   Y+   Q  I + D   R 
Sbjct: 58  HTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRV 101

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 36.2 bits (83), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 7   EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           + +++ F + DVGGQ   R  W H F+N   ++F+V  ++ D+++   D  +RM
Sbjct: 163 DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.65
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.64
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.64
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.62
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.62
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.58
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.57
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.57
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.55
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.54
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.53
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.52
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.52
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.51
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.5
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.5
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.49
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.49
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.49
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.48
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.48
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.46
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.45
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.44
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.42
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.41
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.4
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.4
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.4
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.4
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.39
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.39
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.39
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.39
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.38
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.38
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.38
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.37
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.37
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.37
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.37
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.37
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.37
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.37
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.37
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.37
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.36
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.36
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.36
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.36
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.36
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.36
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.36
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.36
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.35
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.35
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.35
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.35
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.35
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.35
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.35
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.34
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.34
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.34
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.34
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.34
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.34
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.34
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.34
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.34
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.34
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.33
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.33
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.33
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.33
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.33
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.32
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.32
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.31
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.31
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.31
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.3
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.3
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.3
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.3
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.3
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.29
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.29
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.29
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.29
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.28
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.28
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.28
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.27
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.27
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.26
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.26
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.25
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.25
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.25
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.23
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.22
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.21
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.16
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.16
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.16
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.15
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.13
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.71
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.03
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.03
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.02
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.91
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.91
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.87
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.77
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.77
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.75
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.73
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.71
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.7
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.67
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.62
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.62
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.57
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.52
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.49
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.45
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.44
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.44
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.42
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.41
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.41
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.41
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.39
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.39
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.38
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.37
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.35
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.35
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.35
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.34
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.34
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.31
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.31
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.3
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.29
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.29
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.28
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.28
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.28
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.27
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.26
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.24
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.2
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.19
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.17
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.15
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.13
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.13
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.11
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.09
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.08
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.05
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.04
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.02
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.98
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.94
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.93
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.91
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.89
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.82
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.75
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.74
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.73
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.73
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.72
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.69
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.68
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.63
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.55
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.47
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.42
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.34
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.32
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.26
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.24
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.17
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.0
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	96.99
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.68
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.66
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.32
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.03
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	95.94
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	95.48
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	94.4
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	93.61
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	93.34
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	92.77
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	92.48
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	91.77
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	90.61
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	90.09
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	89.45
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	81.63

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.65  E-value=3.6e-16  Score=81.77  Aligned_cols=55  Identities=18%  Similarity=0.463  Sum_probs=51.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..+.+++||++|+++++.+++.|+++++++++|||++++++|+++..|+..+.+.
T Consensus        60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~  114 (216)
T 4dkx_A           60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE  114 (216)
T ss_dssp             CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999999999999987653

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.64  E-value=1.4e-15  Score=85.47  Aligned_cols=60  Identities=30%  Similarity=0.601  Sum_probs=55.5

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----------hhhHHHHHHHHHHHhcc
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRIVEARDELHRMLNE   63 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~sf~~~~~~~~~~~~~   63 (65)
                      .++..+++.+++||++|+++++..|..||++++++|+|||+++          .++|.++..|+..+.++
T Consensus       210 ~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          210 TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             EEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             EEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            4566778999999999999999999999999999999999999          88999999999998765

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.64  E-value=4.4e-16  Score=86.00  Aligned_cols=62  Identities=26%  Similarity=0.489  Sum_probs=56.8

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC----------ChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~sf~~~~~~~~~~~~~   63 (65)
                      +..+++.+++.+++||++|+++++..|..||++++++|+|+|++          +.++|.+...|+..+.++
T Consensus       152 ~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~  223 (340)
T 4fid_A          152 HEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN  223 (340)
T ss_dssp             EEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred             EEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence            45667778899999999999999999999999999999999999          788999999999998765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.62  E-value=1.3e-15  Score=83.76  Aligned_cols=62  Identities=24%  Similarity=0.506  Sum_probs=55.5

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC----------ChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~sf~~~~~~~~~~~~~   63 (65)
                      +..+++.+++.+++||++|+++++..|..||++++++|+|+|++          +.++|.+...|++.+.++
T Consensus       158 ~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~  229 (327)
T 3ohm_A          158 IEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY  229 (327)
T ss_dssp             EEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred             EEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence            35667888999999999999999999999999999999999665          678899999999998765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.62  E-value=2.3e-15  Score=83.40  Aligned_cols=61  Identities=30%  Similarity=0.590  Sum_probs=55.3

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----------hhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~sf~~~~~~~~~~~~~   63 (65)
                      ..++..+++.+++||++|+++++..|..||++++++|+|+|+++          ..++.++..|+..+.++
T Consensus       185 ~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~  255 (353)
T 1cip_A          185 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN  255 (353)
T ss_dssp             EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             EEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence            45667788999999999999999999999999999999999999          56799999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.58  E-value=3.2e-14  Score=72.44  Aligned_cols=62  Identities=45%  Similarity=0.821  Sum_probs=56.7

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++..++.....+.+||++|++.+...+..++++++++++|+|+++.++|.++..|+.+++++
T Consensus        54 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~  115 (199)
T 4bas_A           54 NVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKH  115 (199)
T ss_dssp             EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred             eEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhC
Confidence            45667788899999999999999999999999999999999999999999999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.57  E-value=5.4e-14  Score=69.73  Aligned_cols=62  Identities=90%  Similarity=1.421  Sum_probs=55.8

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +...+......+.+||++|++.++..+..++++++++++|+|++++++|..+..|+.++++.
T Consensus        35 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~   96 (164)
T 1r8s_A           35 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE   96 (164)
T ss_dssp             CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred             eEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            45567778899999999999999999999999999999999999999999999999887653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.57  E-value=9.2e-15  Score=81.26  Aligned_cols=61  Identities=30%  Similarity=0.574  Sum_probs=48.8

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----------hhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~sf~~~~~~~~~~~~~   63 (65)
                      ..++..+++.+++||++|+++++..|..||++++++|+|+|+++          ..+|.++..|+..+.++
T Consensus       193 ~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~  263 (362)
T 1zcb_A          193 EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN  263 (362)
T ss_dssp             EEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             EEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence            34567788999999999999999999999999999999999999          77999999999998765

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.55  E-value=8.3e-14  Score=70.55  Aligned_cols=61  Identities=49%  Similarity=0.960  Sum_probs=54.8

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.++...+..+.+||++|++.++..|..++++++++++|+|++++++|.++..|+.++++.
T Consensus        52 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  112 (181)
T 1fzq_A           52 IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE  112 (181)
T ss_dssp             EEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTC
T ss_pred             EEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhC
Confidence            4566667889999999999999999999999999999999999999999999999887653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.54  E-value=1.2e-14  Score=80.61  Aligned_cols=55  Identities=25%  Similarity=0.607  Sum_probs=49.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC----------ChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN----------DRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+.+++||++|+++++..|..||++++++|+|+|++          +.++|+++..|++++.++
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~  245 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ  245 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc
Confidence            5689999999999999999999999999999999998          888999999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.53  E-value=1.4e-13  Score=69.79  Aligned_cols=62  Identities=47%  Similarity=0.866  Sum_probs=52.1

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +..++...+..+.+||++|++.++..+..++++++++++|+|++++++|.++..|+.+++++
T Consensus        51 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~  112 (187)
T 1zj6_A           51 NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH  112 (187)
T ss_dssp             SCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTS
T ss_pred             ceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence            34566777899999999999999999999999999999999999999999999999888754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.52  E-value=1.5e-13  Score=70.55  Aligned_cols=61  Identities=30%  Similarity=0.791  Sum_probs=51.0

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ...+...+..+.+||++|++.++..+..++++++++++|+|++++++|.++..|+.++++.
T Consensus        61 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~  121 (198)
T 1f6b_A           61 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD  121 (198)
T ss_dssp             CEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred             eEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence            3456667799999999999999999999999999999999999999999999999888653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.52  E-value=1.6e-13  Score=70.07  Aligned_cols=60  Identities=85%  Similarity=1.403  Sum_probs=50.2

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...++.....+.+||++|++.++..+..++++++++++|+|++++++|..+..|+.++++
T Consensus        65 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~  124 (192)
T 2b6h_A           65 VETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ  124 (192)
T ss_dssp             EEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred             EEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc
Confidence            456777889999999999999999999999999999999999999999999999988765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.51  E-value=2.1e-13  Score=68.86  Aligned_cols=62  Identities=47%  Similarity=0.866  Sum_probs=55.7

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++.++...+..+.+||++|++.++..+..++++++++++|+|++++++|.++..++.++++.
T Consensus        56 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~  117 (181)
T 2h17_A           56 NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH  117 (181)
T ss_dssp             SCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTC
T ss_pred             eeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence            34566777899999999999999999999999999999999999999999999999888753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.50  E-value=3.2e-13  Score=68.60  Aligned_cols=61  Identities=46%  Similarity=0.881  Sum_probs=54.6

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ...+...+..+.+||++|++.++..+..++++++++++|+|++++++|.++..|+.++++.
T Consensus        59 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~  119 (190)
T 2h57_A           59 IEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH  119 (190)
T ss_dssp             EEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence            4456666789999999999999999999999999999999999999999999999888754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.50  E-value=5.5e-13  Score=67.99  Aligned_cols=60  Identities=42%  Similarity=0.810  Sum_probs=54.5

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..++...+..+.+||++|++.++..+..++++++++++|+|++++++|+++..|+.++++
T Consensus        59 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  118 (190)
T 1m2o_B           59 SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN  118 (190)
T ss_dssp             EEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred             eEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHc
Confidence            455666779999999999999999999999999999999999999999999999988865

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.49  E-value=2.2e-13  Score=68.85  Aligned_cols=61  Identities=46%  Similarity=0.962  Sum_probs=55.1

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..++......+.+||++|++.+...+..++++++++++|+|++++++|+++.+|+.+++++
T Consensus        54 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~  114 (186)
T 1ksh_A           54 IKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE  114 (186)
T ss_dssp             EEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred             eEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhC
Confidence            4556667899999999999999999999999999999999999999999999999888754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.49  E-value=3.7e-13  Score=66.97  Aligned_cols=61  Identities=59%  Similarity=1.036  Sum_probs=54.8

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ...+......+.+||++|++.+...+..++++++++++|+|++++++|.++..++.++++.
T Consensus        43 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~  103 (171)
T 1upt_A           43 VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE  103 (171)
T ss_dssp             EEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC
T ss_pred             eEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            4456677899999999999999999999999999999999999999999999998887654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.49  E-value=2.2e-13  Score=69.03  Aligned_cols=62  Identities=58%  Similarity=1.075  Sum_probs=55.9

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +..++......+.+||++|++.++..+..++++++++++|+|++++++|.++..++.++++.
T Consensus        57 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~  118 (189)
T 2x77_A           57 NLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE  118 (189)
T ss_dssp             CEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTC
T ss_pred             EEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            45667778899999999999999999999999999999999999999999999999887653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.48  E-value=5e-13  Score=66.95  Aligned_cols=59  Identities=19%  Similarity=0.415  Sum_probs=51.3

Q ss_pred             EEEEECC---EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            4 ETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         4 ~~~~~~~---~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+...+   ..+.+||++|++.+...+..++++++++++|+|++++++|+++..|+..+.+
T Consensus        46 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  107 (178)
T 2hxs_A           46 RRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKK  107 (178)
T ss_dssp             EEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3444443   7899999999999999999999999999999999999999999888877654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.48  E-value=4.1e-13  Score=68.22  Aligned_cols=61  Identities=28%  Similarity=0.831  Sum_probs=54.9

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +..+......+.+||++|++.+...+..++++++++++|+|++++++|..+..|+.++++.
T Consensus        59 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~  119 (188)
T 1zd9_A           59 MRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK  119 (188)
T ss_dssp             EEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred             EEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhC
Confidence            3456677899999999999999999999999999999999999999999999999888653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.46  E-value=5.4e-13  Score=68.53  Aligned_cols=58  Identities=21%  Similarity=0.548  Sum_probs=51.2

Q ss_pred             EEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            5 TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         5 ~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+...+  +.+.+||++|++.+...+..++++++++++|+|++++++|+++..|+..+.+
T Consensus        70 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~  129 (201)
T 2hup_A           70 TLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRK  129 (201)
T ss_dssp             EEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHH
T ss_pred             EEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            344443  7899999999999999999999999999999999999999999999888754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.45  E-value=8.9e-13  Score=66.34  Aligned_cols=62  Identities=58%  Similarity=1.069  Sum_probs=51.8

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ...++...+..+.+||++|++.+...+..++++++++++|+|++++++|.++..|+.++++.
T Consensus        53 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~  114 (183)
T 1moz_A           53 NVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE  114 (183)
T ss_dssp             CEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTS
T ss_pred             ceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcC
Confidence            45566777899999999999999999999999999999999999999999999999888753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.44  E-value=6.7e-13  Score=66.86  Aligned_cols=58  Identities=22%  Similarity=0.573  Sum_probs=42.3

Q ss_pred             EEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            5 TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         5 ~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+...+  +.+.+||++|++.+...+..++++++++++|+|++++++|+.+..|+..+.+
T Consensus        49 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  108 (183)
T 2fu5_C           49 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE  108 (183)
T ss_dssp             EEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            344444  7899999999999999999999999999999999999999999999887754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.42  E-value=7.2e-13  Score=68.71  Aligned_cols=57  Identities=11%  Similarity=0.332  Sum_probs=48.9

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHH-HHHHHHHHhc
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVE-ARDELHRMLN   62 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~-~~~~~~~~~~   62 (65)
                      ++...+.+.+||++|++.+...+..++++++++++|||++++++|.+ +..|+..+.+
T Consensus        70 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~  127 (214)
T 3q3j_B           70 TEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD  127 (214)
T ss_dssp             C--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHH
T ss_pred             ECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence            34456889999999999999999999999999999999999999999 5777776643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.40  E-value=2.9e-12  Score=66.03  Aligned_cols=52  Identities=19%  Similarity=0.488  Sum_probs=48.1

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+.+
T Consensus        75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~  126 (201)
T 2ew1_A           75 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ  126 (201)
T ss_dssp             EEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999998887653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2e-12  Score=67.24  Aligned_cols=58  Identities=22%  Similarity=0.467  Sum_probs=50.1

Q ss_pred             EEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            5 TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         5 ~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+...+  +.+.+||++|++.+...+..+++.++++|+|+|++++.+|..+..|+..+..
T Consensus        54 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~  113 (223)
T 3cpj_B           54 TLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE  113 (223)
T ss_dssp             EEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            344444  7899999999999999999999999999999999999999999999887754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.40  E-value=8.3e-13  Score=66.41  Aligned_cols=53  Identities=17%  Similarity=0.216  Sum_probs=48.9

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+.+||++|++.+...+..++++++++++|+|++++++|+.+..|+.++.+.
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  106 (181)
T 3t5g_A           54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM  106 (181)
T ss_dssp             EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            77899999999999999999999999999999999999999999998887653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.40  E-value=1.7e-12  Score=66.47  Aligned_cols=57  Identities=12%  Similarity=0.190  Sum_probs=50.0

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +...+.+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+.+.
T Consensus        68 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  124 (201)
T 3oes_A           68 GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG  124 (201)
T ss_dssp             ---CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            446688999999999999999999999999999999999999999999999888653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.39  E-value=3.4e-12  Score=64.31  Aligned_cols=51  Identities=24%  Similarity=0.551  Sum_probs=47.7

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      +.+.+||++|++.+...+..++++++++++|+|+++++++..+..|+..+.
T Consensus        59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  109 (186)
T 2bme_A           59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR  109 (186)
T ss_dssp             EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999998887764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.39  E-value=1.3e-12  Score=64.84  Aligned_cols=53  Identities=25%  Similarity=0.572  Sum_probs=48.8

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..++++++++++|+|++++.++.++..|+..+.+
T Consensus        51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  103 (170)
T 1ek0_A           51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE  103 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999998887754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.39  E-value=3.2e-12  Score=63.97  Aligned_cols=59  Identities=29%  Similarity=0.630  Sum_probs=51.6

Q ss_pred             EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+...+  +.+.+||++|++.+...+..++++++++++|+|+++++++..+..|+..+.+
T Consensus        49 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  109 (181)
T 3tw8_B           49 RTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ  109 (181)
T ss_dssp             EEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3344444  7899999999999999999999999999999999999999999999887754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.39  E-value=3.7e-12  Score=64.62  Aligned_cols=59  Identities=25%  Similarity=0.607  Sum_probs=51.2

Q ss_pred             EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+...+  +.+.+||++|++.+...+..+++.++++++|+|++++++|+.+..|+..+..
T Consensus        56 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  116 (196)
T 3tkl_A           56 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR  116 (196)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            3344444  7899999999999999999999999999999999999999999998877643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.38  E-value=1.7e-12  Score=66.38  Aligned_cols=53  Identities=13%  Similarity=0.250  Sum_probs=49.2

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++.+|..+..|+..+..
T Consensus        72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  124 (208)
T 2yc2_C           72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKS  124 (208)
T ss_dssp             EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999888764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.38  E-value=1.7e-12  Score=64.33  Aligned_cols=53  Identities=23%  Similarity=0.550  Sum_probs=48.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..++++++++++|+|+++++++..+..|+..+.+
T Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  106 (170)
T 1r2q_A           54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR  106 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999998887754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.38  E-value=4.3e-13  Score=73.92  Aligned_cols=39  Identities=26%  Similarity=0.387  Sum_probs=34.9

Q ss_pred             CCEEEEEEECCCCcCchh---hHHhhhhCCcEEEEEEECCCh
Q 037770            9 KNISFTVWDVGGQDKIRP---LWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~---~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ..+.+++||++|+++++.   .++.||++++++|+|||++++
T Consensus        44 ~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~   85 (331)
T 3r7w_B           44 TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE   85 (331)
T ss_dssp             SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC
T ss_pred             cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch
Confidence            458899999999999964   468999999999999999987

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.37  E-value=1.4e-12  Score=64.73  Aligned_cols=55  Identities=20%  Similarity=0.209  Sum_probs=35.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..+.+.+||++|++.+...+..+++.++++++|||++++++|+.+..|+.++.+.
T Consensus        47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  101 (166)
T 3q72_A           47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA  101 (166)
T ss_dssp             EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            3467899999999999999999999999999999999999999999999888653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.37  E-value=9.8e-13  Score=66.24  Aligned_cols=53  Identities=17%  Similarity=0.332  Sum_probs=48.5

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+.+
T Consensus        65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  117 (183)
T 3kkq_A           65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR  117 (183)
T ss_dssp             EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36678899999999999999999999999999999999999999999888754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.37  E-value=1.4e-12  Score=65.25  Aligned_cols=52  Identities=21%  Similarity=0.472  Sum_probs=48.4

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+||++|++.+...+..++++++++++|+|+++++++..+..|+.++++
T Consensus        57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  108 (181)
T 2fn4_A           57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR  108 (181)
T ss_dssp             EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999888754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.37  E-value=3.8e-12  Score=64.55  Aligned_cols=53  Identities=23%  Similarity=0.547  Sum_probs=48.5

Q ss_pred             EEEEEEECCCCcCch-hhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770           11 ISFTVWDVGGQDKIR-PLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~-~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+.+||++|++.+. ..+..++++++++++|+|++++.+|..+..|+.++.+.
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~  122 (189)
T 1z06_A           69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH  122 (189)
T ss_dssp             EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            789999999999988 88999999999999999999999999999998887653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.37  E-value=1.1e-12  Score=64.98  Aligned_cols=54  Identities=17%  Similarity=0.368  Sum_probs=49.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ....+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+.+
T Consensus        49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  102 (167)
T 1c1y_A           49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR  102 (167)
T ss_dssp             CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999988887764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.37  E-value=2.2e-12  Score=64.69  Aligned_cols=53  Identities=21%  Similarity=0.515  Sum_probs=49.0

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..++++++++++|+|++++.+|+.+..|+..+.+
T Consensus        60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  112 (181)
T 2efe_B           60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA  112 (181)
T ss_dssp             EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999887764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.37  E-value=3e-12  Score=70.27  Aligned_cols=61  Identities=90%  Similarity=1.424  Sum_probs=50.6

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ...++...+.+.+||++|++.+...+..+++.++++|+|||++++++|..+..++.++++.
T Consensus       201 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~  261 (329)
T 3o47_A          201 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE  261 (329)
T ss_dssp             EEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTC
T ss_pred             EEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhh
Confidence            4567778899999999999999999999999999999999999999999999998887654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.37  E-value=3.3e-12  Score=64.91  Aligned_cols=53  Identities=25%  Similarity=0.537  Sum_probs=48.8

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++++++.+..|+..+.+
T Consensus        69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~  121 (191)
T 2a5j_A           69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ  121 (191)
T ss_dssp             EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999887754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.37  E-value=1.3e-12  Score=66.04  Aligned_cols=53  Identities=9%  Similarity=0.290  Sum_probs=46.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~   61 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++++++|.++ ..|+..+.
T Consensus        53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~  106 (184)
T 1m7b_A           53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ  106 (184)
T ss_dssp             CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            447899999999999999999999999999999999999999998 56666553

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.36  E-value=1.9e-12  Score=64.01  Aligned_cols=53  Identities=17%  Similarity=0.438  Sum_probs=45.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..+++.++++++|+|+++++++..+..|+.++.+
T Consensus        51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  103 (168)
T 1u8z_A           51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR  103 (168)
T ss_dssp             EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999998887764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.36  E-value=7.6e-12  Score=64.14  Aligned_cols=53  Identities=23%  Similarity=0.583  Sum_probs=48.6

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++.+|..+..|+..+..
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~  108 (206)
T 2bcg_Y           56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR  108 (206)
T ss_dssp             EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999998887653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.36  E-value=1.2e-12  Score=67.40  Aligned_cols=53  Identities=9%  Similarity=0.240  Sum_probs=45.5

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~   61 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++++++|.++. .|+..+.
T Consensus        55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~  108 (212)
T 2j0v_A           55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR  108 (212)
T ss_dssp             CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4478999999999999999999999999999999999999999987 6766654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.36  E-value=1.2e-11  Score=63.30  Aligned_cols=52  Identities=19%  Similarity=0.544  Sum_probs=47.7

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ...+.+||++|++.+...+..+++.++++++|+|++++.++..+..|+..+.
T Consensus        76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~  127 (199)
T 2p5s_A           76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIE  127 (199)
T ss_dssp             EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence            3679999999999999999999999999999999999999999988887664

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.36  E-value=2.5e-12  Score=65.71  Aligned_cols=53  Identities=13%  Similarity=0.206  Sum_probs=46.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++.+++++++|+|++++++|.++. .|+..+..
T Consensus        67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  120 (201)
T 2q3h_A           67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC  120 (201)
T ss_dssp             EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999987 67666543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.36  E-value=1.7e-12  Score=66.02  Aligned_cols=53  Identities=9%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++++|.++. .|+..+.+
T Consensus        65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  118 (194)
T 2atx_A           65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE  118 (194)
T ss_dssp             EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999987 67666543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.36  E-value=7e-12  Score=63.87  Aligned_cols=51  Identities=20%  Similarity=0.539  Sum_probs=47.0

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      +.+.+||++|++.+...+..++++++++++|+|+++..+++.+..|+..+.
T Consensus        75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~  125 (192)
T 2il1_A           75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID  125 (192)
T ss_dssp             EEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999988876654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.36  E-value=1.4e-12  Score=66.12  Aligned_cols=52  Identities=21%  Similarity=0.395  Sum_probs=46.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECC------ChhhHHHHHHHHHHH
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN------DRDRIVEARDELHRM   60 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~------~~~sf~~~~~~~~~~   60 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++      +.++|..+..|+.++
T Consensus        72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~  129 (198)
T 3t1o_A           72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY  129 (198)
T ss_dssp             CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh
Confidence            4478999999999999999999999999999999999      667888888888776

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.35  E-value=2.2e-12  Score=65.54  Aligned_cols=53  Identities=15%  Similarity=0.245  Sum_probs=43.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.++.. ..++++++++++|||++++++|+++..|+..+.+
T Consensus        67 ~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~  119 (187)
T 3c5c_A           67 QPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLAL  119 (187)
T ss_dssp             EEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3478899999999988775 6799999999999999999999999999888764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.35  E-value=1.4e-12  Score=66.82  Aligned_cols=54  Identities=20%  Similarity=0.375  Sum_probs=47.7

Q ss_pred             CCEEEEEEECCCCcCchh-hHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+.. ++..++++++++++|||++++++|.++..|+.++.+
T Consensus        70 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~  124 (195)
T 3cbq_A           70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA  124 (195)
T ss_dssp             EEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            347889999999988765 788899999999999999999999999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.35  E-value=1.7e-12  Score=65.10  Aligned_cols=53  Identities=17%  Similarity=0.527  Sum_probs=40.8

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++.+++++..|+..+..
T Consensus        59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~  111 (180)
T 2g6b_A           59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE  111 (180)
T ss_dssp             EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999988887654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.35  E-value=1.5e-12  Score=64.76  Aligned_cols=53  Identities=25%  Similarity=0.607  Sum_probs=41.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|+++++++..+..|+..+.
T Consensus        53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  105 (170)
T 1z08_A           53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR  105 (170)
T ss_dssp             CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            44789999999999999999999999999999999999999999998887764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.35  E-value=1.3e-11  Score=63.14  Aligned_cols=53  Identities=19%  Similarity=0.507  Sum_probs=48.8

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++++|..+..|+..+..
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~  108 (203)
T 1zbd_A           56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT  108 (203)
T ss_dssp             EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999998887753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.35  E-value=1.7e-12  Score=67.04  Aligned_cols=53  Identities=9%  Similarity=0.290  Sum_probs=47.2

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~   61 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|.++ ..|+..+.
T Consensus        74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~  127 (205)
T 1gwn_A           74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ  127 (205)
T ss_dssp             SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999999999998 67766654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.35  E-value=2e-12  Score=65.77  Aligned_cols=52  Identities=13%  Similarity=0.313  Sum_probs=45.5

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHH
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRM   60 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~   60 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++++++|.++ ..|+..+
T Consensus        69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  121 (194)
T 3reg_A           69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI  121 (194)
T ss_dssp             EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred             EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999997 4555544

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.34  E-value=3.6e-12  Score=62.95  Aligned_cols=53  Identities=15%  Similarity=0.355  Sum_probs=48.6

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..++++++++++|+|++++.++..+..|+.++.+
T Consensus        50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  102 (167)
T 1kao_A           50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIR  102 (167)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999887764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.34  E-value=3.4e-12  Score=64.96  Aligned_cols=54  Identities=19%  Similarity=0.450  Sum_probs=49.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ....+.+||++|++.+...+..+++.++++++|+|+++++++..+..|+..+.+
T Consensus        70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~  123 (192)
T 2fg5_A           70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE  123 (192)
T ss_dssp             SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999887754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.34  E-value=8.9e-12  Score=63.11  Aligned_cols=53  Identities=30%  Similarity=0.636  Sum_probs=49.1

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..+++.++++++|+|++++.++..+..|+.++.+
T Consensus        63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~  115 (195)
T 1x3s_A           63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET  115 (195)
T ss_dssp             EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTT
T ss_pred             EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999888765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.34  E-value=1.8e-11  Score=61.19  Aligned_cols=52  Identities=13%  Similarity=0.464  Sum_probs=48.0

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|++.+...+..++++++++++|+|++++.++..+..|+.++..
T Consensus        56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  107 (177)
T 1wms_A           56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY  107 (177)
T ss_dssp             EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999888877653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.34  E-value=3.2e-12  Score=64.18  Aligned_cols=55  Identities=11%  Similarity=0.250  Sum_probs=43.4

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML   61 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~   61 (65)
                      ++..+.+.+||++|++.+...+..++++++++++|+|++++++|+++. .|+..+.
T Consensus        52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  107 (182)
T 3bwd_D           52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK  107 (182)
T ss_dssp             ------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            344577889999999999999999999999999999999999999987 5666554

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.34  E-value=6.5e-12  Score=64.49  Aligned_cols=59  Identities=22%  Similarity=0.558  Sum_probs=51.1

Q ss_pred             EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+...+  +.+.+||++|++.+...+..+++.++++++|+|++++.+|..+..|+..+..
T Consensus        60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~  120 (213)
T 3cph_A           60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNE  120 (213)
T ss_dssp             EEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3444444  7899999999999999999999999999999999999999999888887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.34  E-value=1.3e-11  Score=61.69  Aligned_cols=52  Identities=17%  Similarity=0.453  Sum_probs=48.2

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|++.+...+..++++++++++|+|++++.++..+..|+..+..
T Consensus        63 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  114 (179)
T 2y8e_A           63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT  114 (179)
T ss_dssp             EEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999887754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.34  E-value=2.7e-12  Score=65.67  Aligned_cols=59  Identities=25%  Similarity=0.607  Sum_probs=48.7

Q ss_pred             EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+...+  +.+.+||++|++.+...+..++++++++++|+|++++++|+.+..|+..+..
T Consensus        73 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  133 (199)
T 3l0i_B           73 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR  133 (199)
T ss_dssp             EEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS
T ss_pred             EEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3444444  7899999999999999999999999999999999999999999999887754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.34  E-value=4.1e-12  Score=63.88  Aligned_cols=52  Identities=17%  Similarity=0.440  Sum_probs=48.5

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|++.+...+..+++.++++++|+|+++++++..+..|+.++.+
T Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  117 (187)
T 2a9k_A           66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR  117 (187)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999998887764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.34  E-value=3.9e-12  Score=64.97  Aligned_cols=52  Identities=17%  Similarity=0.440  Sum_probs=48.6

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|++.+...+..+++.++++++|||++++++|..+..|+..+.+
T Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  113 (206)
T 2bov_A           62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR  113 (206)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999999888764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.33  E-value=1.5e-11  Score=62.37  Aligned_cols=53  Identities=19%  Similarity=0.549  Sum_probs=48.6

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..+++.++++++|+|++++++++.+..|+..+.+
T Consensus        70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~  122 (189)
T 2gf9_A           70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT  122 (189)
T ss_dssp             EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999988887654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.33  E-value=3.7e-12  Score=63.65  Aligned_cols=53  Identities=26%  Similarity=0.535  Sum_probs=48.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|+++..+++.+..|+..+..
T Consensus        63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  115 (179)
T 1z0f_A           63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN  115 (179)
T ss_dssp             EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999988877653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.33  E-value=1.5e-11  Score=62.33  Aligned_cols=52  Identities=21%  Similarity=0.488  Sum_probs=48.5

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+||++|++.+...+..+++.++++++|+|++++.++..+..|+.++..
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~  144 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI  144 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999999999999999999998887764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.33  E-value=4.4e-12  Score=63.91  Aligned_cols=53  Identities=13%  Similarity=0.325  Sum_probs=45.7

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..+++.++++++|+|++++++|..+..|+..+.+
T Consensus        51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  103 (189)
T 4dsu_A           51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKR  103 (189)
T ss_dssp             EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999887765

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.33  E-value=3.5e-12  Score=65.40  Aligned_cols=52  Identities=23%  Similarity=0.526  Sum_probs=48.1

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|++.+...+..++++++++++|+|++++.+++.+..|+..+..
T Consensus        74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  125 (200)
T 2o52_A           74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDART  125 (200)
T ss_dssp             EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999887753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.32  E-value=2.7e-11  Score=60.07  Aligned_cols=52  Identities=19%  Similarity=0.473  Sum_probs=47.9

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+||++|.+.+...+..++++++++++|+|++++.++..+..|+..+..
T Consensus        55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~  106 (170)
T 1z0j_A           55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ  106 (170)
T ss_dssp             EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999888877653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.32  E-value=6.5e-12  Score=62.89  Aligned_cols=53  Identities=17%  Similarity=0.387  Sum_probs=39.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..++++++++++|+|++++.+++.+..|+.++..
T Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  109 (182)
T 1ky3_A           57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV  109 (182)
T ss_dssp             CEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999998887754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.31  E-value=2.3e-11  Score=61.73  Aligned_cols=53  Identities=17%  Similarity=0.454  Sum_probs=48.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..++++++++++|+|++++.++..+..|+..+..
T Consensus        73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~  125 (193)
T 2oil_A           73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD  125 (193)
T ss_dssp             EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHT
T ss_pred             EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999888754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.31  E-value=3.9e-12  Score=63.99  Aligned_cols=53  Identities=15%  Similarity=0.248  Sum_probs=46.5

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~   61 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++++.+|.++. .|+..+.
T Consensus        51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  104 (186)
T 1mh1_A           51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR  104 (186)
T ss_dssp             EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999987 5665554

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.31  E-value=1.3e-12  Score=66.46  Aligned_cols=54  Identities=20%  Similarity=0.544  Sum_probs=49.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|++++++|+.+..|+..+..
T Consensus        70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  123 (191)
T 3dz8_A           70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT  123 (191)
T ss_dssp             TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999999999999999999999998887754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.30  E-value=7.6e-12  Score=62.08  Aligned_cols=53  Identities=21%  Similarity=0.565  Sum_probs=48.5

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++.++..+..|+..+.+
T Consensus        51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  103 (170)
T 1g16_A           51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE  103 (170)
T ss_dssp             EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999988887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.30  E-value=5.5e-12  Score=64.04  Aligned_cols=49  Identities=14%  Similarity=0.256  Sum_probs=43.6

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      .+.+.+||++|++.++     ++++++++++|||++++++|+++..|+.++...
T Consensus        66 ~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~  114 (184)
T 3ihw_A           66 SYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF  114 (184)
T ss_dssp             EEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence            3788899999998876     788999999999999999999999999887653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.30  E-value=1.4e-11  Score=62.13  Aligned_cols=53  Identities=19%  Similarity=0.566  Sum_probs=49.0

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..++++++++++|+|++++.++..+..|+..+..
T Consensus        69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  121 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM  121 (195)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999887764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.30  E-value=6.3e-12  Score=62.39  Aligned_cols=53  Identities=13%  Similarity=0.236  Sum_probs=47.6

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..+++.++++++|+|++++++++++..|+..+.+
T Consensus        50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~  102 (172)
T 2erx_A           50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE  102 (172)
T ss_dssp             EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred             EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999988888776643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.30  E-value=3e-12  Score=63.64  Aligned_cols=53  Identities=21%  Similarity=0.364  Sum_probs=42.2

Q ss_pred             CEEEEEEECCCCcCchh-hHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+.. .+..++++++++++|||++++++|+.+..|+.++.+
T Consensus        50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  103 (169)
T 3q85_A           50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA  103 (169)
T ss_dssp             EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHh
Confidence            46788999999998876 788889999999999999999999999999988765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.29  E-value=4e-12  Score=65.89  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=49.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|+|+++..+|..+..|+..+.+
T Consensus        62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  115 (221)
T 3gj0_A           62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR  115 (221)
T ss_dssp             EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999999999999999888764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.29  E-value=3.6e-12  Score=63.16  Aligned_cols=53  Identities=17%  Similarity=0.513  Sum_probs=48.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..++++++++++|+|++++++++.+..|+..+..
T Consensus        53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  105 (168)
T 1z2a_A           53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA  105 (168)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999888887754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.29  E-value=1e-11  Score=63.88  Aligned_cols=54  Identities=13%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML   61 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~   61 (65)
                      ...+.+.+||++|++.+...+..++++++++++|+|++++.+|.++. .|+..+.
T Consensus        75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  129 (204)
T 4gzl_A           75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR  129 (204)
T ss_dssp             -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            34577889999999999999999999999999999999999999997 5555543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.29  E-value=4.1e-12  Score=65.56  Aligned_cols=53  Identities=19%  Similarity=0.597  Sum_probs=48.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..+++.++++++|+|+++..++..+..|+..+..
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~  135 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA  135 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCC
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999887653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.28  E-value=1.4e-11  Score=62.96  Aligned_cols=53  Identities=15%  Similarity=0.376  Sum_probs=48.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++.+|..+..|+.++..
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  108 (207)
T 1vg8_A           56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI  108 (207)
T ss_dssp             EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999888887653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.28  E-value=3.6e-12  Score=65.98  Aligned_cols=52  Identities=15%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~   61 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++++|.++. .|+..+.
T Consensus        81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  133 (214)
T 2j1l_A           81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN  133 (214)
T ss_dssp             EEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999987 5666553

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.28  E-value=1.3e-11  Score=60.75  Aligned_cols=53  Identities=13%  Similarity=0.328  Sum_probs=48.0

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...+..++..++++++|+|++++.++.++..|+..+.+
T Consensus        50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~  102 (166)
T 2ce2_X           50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKR  102 (166)
T ss_dssp             EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999888877654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.27  E-value=9.5e-12  Score=63.43  Aligned_cols=52  Identities=19%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++. ...+..+++.++++++|+|++++++|+++..|+..+.+
T Consensus        75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~  126 (196)
T 2atv_A           75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDE  126 (196)
T ss_dssp             EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            47799999999988 78889999999999999999999999999888877654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.27  E-value=7.6e-12  Score=64.11  Aligned_cols=51  Identities=14%  Similarity=0.347  Sum_probs=45.2

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRM   60 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~   60 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++++|.++ ..|+..+
T Consensus        72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  123 (201)
T 2gco_A           72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV  123 (201)
T ss_dssp             EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred             EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999998 4555544

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.26  E-value=1.3e-11  Score=63.49  Aligned_cols=52  Identities=13%  Similarity=0.352  Sum_probs=45.8

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH-HHHHHHHh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA-RDELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~-~~~~~~~~   61 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++++|.++ ..|+..+.
T Consensus        72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  124 (207)
T 2fv8_A           72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK  124 (207)
T ss_dssp             EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999998 55655543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.26  E-value=9.2e-12  Score=63.29  Aligned_cols=52  Identities=12%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      .+.+.+||++|++.+...+..++..++++++|+|++++++|.++..|+..+.
T Consensus        55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~  106 (199)
T 2gf0_A           55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV  106 (199)
T ss_dssp             EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHH
T ss_pred             EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999998887776553

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.25  E-value=1.6e-11  Score=61.52  Aligned_cols=46  Identities=11%  Similarity=0.174  Sum_probs=39.5

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      .+.+.+||++|++.     ..++++++++++|||++++++|.++..|++.+
T Consensus        53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i   98 (178)
T 2iwr_A           53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQL   98 (178)
T ss_dssp             EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            46789999999987     46888999999999999999999998865443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.25  E-value=1.9e-11  Score=60.90  Aligned_cols=53  Identities=15%  Similarity=0.111  Sum_probs=42.3

Q ss_pred             CEEEEEEECCCCcC--chhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDK--IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~--~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.  +...+..+++.++++++|||++++++|+.+..|+..+.+
T Consensus        51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~  105 (175)
T 2nzj_A           51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRR  105 (175)
T ss_dssp             EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            36789999999988  566778899999999999999999999999988887754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.25  E-value=4.7e-11  Score=64.99  Aligned_cols=50  Identities=30%  Similarity=0.454  Sum_probs=44.6

Q ss_pred             CCEEEEEEECCCCcCc-----hhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHH
Q 037770            9 KNISFTVWDVGGQDKI-----RPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH   58 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~-----~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~   58 (65)
                      +.+.+.+||++|++.+     ...+..++++++++++|+|++++++|+++..|..
T Consensus        50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~  104 (307)
T 3r7w_A           50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAK  104 (307)
T ss_dssp             TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHH
T ss_pred             CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHH
Confidence            4689999999999988     6788999999999999999999999999876644

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.23  E-value=2e-11  Score=61.80  Aligned_cols=52  Identities=13%  Similarity=0.311  Sum_probs=37.0

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|++.+...+..+++.++++++|+|+++..++.++..|+..+..
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  120 (190)
T 3con_A           69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKR  120 (190)
T ss_dssp             EEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999888877653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.22  E-value=4.4e-11  Score=61.05  Aligned_cols=53  Identities=23%  Similarity=0.434  Sum_probs=45.3

Q ss_pred             ECCEEEEEEECCCCcCchhhH---HhhhhCCcEEEEEEECCCh--hhHHHHHHHHHHH
Q 037770            8 YKNISFTVWDVGGQDKIRPLW---RHYFQNTQGLIFVVDSNDR--DRIVEARDELHRM   60 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~---~~~~~~~~~ii~v~d~~~~--~sf~~~~~~~~~~   60 (65)
                      ...+.+.+||++|++.+....   ..++++++++++|||+++.  +++..+..|+.++
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~  123 (196)
T 3llu_A           66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKA  123 (196)
T ss_dssp             TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHH
Confidence            355889999999999986655   8999999999999999987  7777777887765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.21  E-value=4.1e-11  Score=61.86  Aligned_cols=52  Identities=27%  Similarity=0.430  Sum_probs=47.9

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +.+.+||++|++.+...+..++.+++++++|+|+++..++.++..|+..+..
T Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  112 (218)
T 4djt_A           61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQA  112 (218)
T ss_dssp             EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999888877653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.16  E-value=5.3e-11  Score=64.50  Aligned_cols=52  Identities=12%  Similarity=0.228  Sum_probs=45.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHHh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~~   61 (65)
                      .+.+.+||++|++.+...+..++++++++++|+|++++.+|.++. .|+..+.
T Consensus       202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  254 (332)
T 2wkq_A          202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR  254 (332)
T ss_dssp             EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            366779999999999999999999999999999999999999987 4555543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.16  E-value=5.2e-11  Score=62.02  Aligned_cols=53  Identities=15%  Similarity=0.145  Sum_probs=45.5

Q ss_pred             CEEEEEEECCCCcC-chhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~-~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|+.. .+.+...+++.++++++|||++++++|+++..|+..+.+
T Consensus        86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~  139 (211)
T 2g3y_A           86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR  139 (211)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHT
T ss_pred             eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            46778999999877 566778889999999999999999999999998877653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.16  E-value=6.3e-11  Score=60.51  Aligned_cols=52  Identities=15%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             CEEEEEEECCCCcC-chhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770           10 NISFTVWDVGGQDK-IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~-~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      .+.+.+||+.|+.. .+.++..+++.++++++|||++++++|+++..|+..+.
T Consensus        55 ~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~  107 (192)
T 2cjw_A           55 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR  107 (192)
T ss_dssp             EEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            46778999999876 55677889999999999999999999999988877664

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.15  E-value=2.2e-10  Score=58.96  Aligned_cols=52  Identities=25%  Similarity=0.431  Sum_probs=44.5

Q ss_pred             CEEEEEEECCCCcCchh-hHHhhhhCCcEEEEEEECCChh-hHHHHHHHHHHHh
Q 037770           10 NISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRD-RIVEARDELHRML   61 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~-sf~~~~~~~~~~~   61 (65)
                      ...+.+||++|++.+.. .+..++++++++++|+|+++.+ ++..+.+++.+++
T Consensus        53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  106 (214)
T 2fh5_B           53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVL  106 (214)
T ss_dssp             CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHH
Confidence            67899999999999988 8899999999999999999864 4777777766654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.13  E-value=2.2e-11  Score=61.68  Aligned_cols=54  Identities=15%  Similarity=0.351  Sum_probs=46.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh-hhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR-DRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~-~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...++.++++++++++|+|++++ .+|..+..|+.++..
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~  108 (184)
T 2zej_A           54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKA  108 (184)
T ss_dssp             --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHH
T ss_pred             CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999999987 579999999887653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.71  E-value=6.7e-12  Score=64.32  Aligned_cols=54  Identities=15%  Similarity=0.275  Sum_probs=46.7

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH-HHHHHH
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR-DELHRM   60 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~-~~~~~~   60 (65)
                      +...+.+.+||++|++.+...+..++++++++++|+|++++.+|.++. .|+..+
T Consensus        74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l  128 (204)
T 3th5_A           74 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV  128 (204)
Confidence            445577889999999999999999999999999999999999999887 555544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.05  E-value=1.6e-09  Score=55.39  Aligned_cols=57  Identities=19%  Similarity=0.423  Sum_probs=48.2

Q ss_pred             EEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            5 TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         5 ~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ++...+  +.+.+||++|++.++..+..+++.++++++|+|+++..++.++..|+..+.
T Consensus        46 ~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  104 (199)
T 2f9l_A           46 SIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR  104 (199)
T ss_dssp             EEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            344443  678899999999999899999999999999999999999998888876653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.03  E-value=3.2e-10  Score=58.51  Aligned_cols=52  Identities=31%  Similarity=0.503  Sum_probs=46.7

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhC----CcEEEEEEECC-ChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQN----TQGLIFVVDSN-DRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~----~~~ii~v~d~~-~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+||++|++.++..+..+++.    ++++++|+|++ ++++|..+.+|+.++++
T Consensus        55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~  111 (218)
T 1nrj_B           55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS  111 (218)
T ss_dssp             SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHh
Confidence            468899999999999999999987    89999999999 88999999999888764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.03  E-value=1.2e-10  Score=61.93  Aligned_cols=57  Identities=7%  Similarity=0.137  Sum_probs=43.3

Q ss_pred             EEECCEEEEEEE-----------------------CCCCcCchhhHHhhhh---------------------CCcEEEEE
Q 037770            6 VEYKNISFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTQGLIFV   41 (65)
Q Consensus         6 ~~~~~~~l~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~ii~v   41 (65)
                      +++..+.+++||                       ++|++++...+..+++                     +++++++|
T Consensus        90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV  169 (255)
T 3c5h_A           90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG  169 (255)
T ss_dssp             ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred             cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence            455678899999                       7788888888888887                     79999999


Q ss_pred             EECCCh--hhHHHHHHHHHHHhc
Q 037770           42 VDSNDR--DRIVEARDELHRMLN   62 (65)
Q Consensus        42 ~d~~~~--~sf~~~~~~~~~~~~   62 (65)
                      ||++++  ++|+.+..|+.++.+
T Consensus       170 ~D~t~~~~~s~~~~~~~l~~i~~  192 (255)
T 3c5h_A          170 IDVSRGMNRNFDDQLKFVSNLYN  192 (255)
T ss_dssp             EECBC----CHHHHHHHHHHHHH
T ss_pred             EECCCCchhhHHHHHHHHHHHHH
Confidence            999998  999999999888764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.02  E-value=3.3e-10  Score=57.38  Aligned_cols=53  Identities=30%  Similarity=0.496  Sum_probs=46.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhC----CcEEEEEEECC-ChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQN----TQGLIFVVDSN-DRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~----~~~ii~v~d~~-~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|+..+...+..++..    ++++++|+|++ +.+++.++..|+.++++
T Consensus        90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  147 (193)
T 2ged_A           90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS  147 (193)
T ss_dssp             CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHh
Confidence            4567899999999998888888877    89999999999 89999999888887764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.91  E-value=3.2e-09  Score=52.98  Aligned_cols=50  Identities=20%  Similarity=0.230  Sum_probs=41.7

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHH
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEA   53 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~   53 (65)
                      ..+...+..+.+||++|++.+...+..++..++++++|+|+++   .++++.+
T Consensus        48 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l  100 (178)
T 2lkc_A           48 YQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI  100 (178)
T ss_dssp             CEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH
T ss_pred             EEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence            3456677889999999999999999999999999999999988   5555443

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.91  E-value=3.9e-10  Score=59.28  Aligned_cols=40  Identities=20%  Similarity=0.382  Sum_probs=26.7

Q ss_pred             ECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH
Q 037770           17 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL   57 (65)
Q Consensus        17 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~   57 (65)
                      +.+|+.+++.+|..||.+.+|+|||+|++|.+.++ +++.+
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL  147 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEF  147 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHH
Confidence            45699999999999999999999999999987654 55555

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.87  E-value=1.9e-08  Score=51.19  Aligned_cols=58  Identities=17%  Similarity=0.401  Sum_probs=48.1

Q ss_pred             EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      .++...+  +.+.+||++|.+++...+..+++.++++++|+|+++..+|+++..|+..+.
T Consensus        69 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  128 (191)
T 1oix_A           69 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR  128 (191)
T ss_dssp             EEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            3444443  567789999999999999999999999999999999999988888876553

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.77  E-value=2.5e-07  Score=45.93  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=39.4

Q ss_pred             EEEEECCEEEEEEECCCCcCch------hhHHhhhh--CCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            4 ETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--NTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~------~~~~~~~~--~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      ..+...+..+.+||++|+..+.      .....+++  +++++++|+|.++.++.   ..|+.++
T Consensus        43 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~---~~~~~~~  104 (165)
T 2wji_A           43 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERN---LYLTLQL  104 (165)
T ss_dssp             EEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHH---HHHHHHH
T ss_pred             EEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHh---HHHHHHH
Confidence            3455567889999999998874      34466665  89999999999986543   3454444

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.77  E-value=8.2e-09  Score=56.15  Aligned_cols=48  Identities=17%  Similarity=0.021  Sum_probs=43.0

Q ss_pred             EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh-hHHHHHHHHHHHh
Q 037770           12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RIVEARDELHRML   61 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-sf~~~~~~~~~~~   61 (65)
                      .+.+||+  +++++.+++.|+++++++++|+|+++++ +++.+..|+..+.
T Consensus        64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~  112 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAE  112 (301)
T ss_dssp             SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHH
T ss_pred             eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            6889999  8999999999999999999999999987 6888888887653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.75  E-value=1.9e-09  Score=58.98  Aligned_cols=39  Identities=21%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             ECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770           17 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE   56 (65)
Q Consensus        17 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~   56 (65)
                      +.+||.+.+.+|..||.+.+|+|||+|++|+++++ +++.
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~E  231 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDE  231 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHH
Confidence            36899999999999999999999999999988754 4443

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.73  E-value=8.5e-09  Score=58.44  Aligned_cols=49  Identities=18%  Similarity=0.163  Sum_probs=42.2

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEAR   54 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~   54 (65)
                      .+...+..+.+||++|+..+...+..++..++++|+|+|.++ .+|+.+.
T Consensus        78 ~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~  126 (435)
T 1jny_A           78 RFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGM  126 (435)
T ss_dssp             EEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHH
T ss_pred             EEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Ccccccc
Confidence            345567889999999999999999999999999999999998 7777544

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.71  E-value=7.4e-08  Score=47.21  Aligned_cols=46  Identities=22%  Similarity=0.264  Sum_probs=36.8

Q ss_pred             EEEEECCEEEEEEECCCCcC-------chhhHHhhhhCCcEEEEEEECCChhh
Q 037770            4 ETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~-------~~~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      ..+...+..+.+||++|...       +...+..+++.++++++|+|+++..+
T Consensus        42 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~   94 (161)
T 2dyk_A           42 GVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT   94 (161)
T ss_dssp             EEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC
T ss_pred             EEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc
Confidence            34555677899999999987       45566778999999999999998544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.70  E-value=7e-08  Score=48.39  Aligned_cols=57  Identities=12%  Similarity=0.264  Sum_probs=40.5

Q ss_pred             EEEEECCEEEEEEECCCCcCchhh--------HHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPL--------WRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~--------~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ..+...+..+.+||++|+......        ...+++.++++++|+|+++..++.. ..|+..+.
T Consensus        45 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~  109 (172)
T 2gj8_A           45 EHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFI  109 (172)
T ss_dssp             EEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHH
T ss_pred             EEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH
Confidence            445566778999999998753211        1246889999999999999888753 45555543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.67  E-value=2.8e-07  Score=47.96  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=38.8

Q ss_pred             EEECCEEEEEEECCCC------cCc---hhhHHhhhhCCcEEEEEEECCChhhHH--HHHHHHHHHh
Q 037770            6 VEYKNISFTVWDVGGQ------DKI---RPLWRHYFQNTQGLIFVVDSNDRDRIV--EARDELHRML   61 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~------~~~---~~~~~~~~~~~~~ii~v~d~~~~~sf~--~~~~~~~~~~   61 (65)
                      +......+.+||++|+      +..   ...+..++..++++++|+|++++.+|.  ....++..+.
T Consensus        71 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~  137 (228)
T 2qu8_A           71 FDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIK  137 (228)
T ss_dssp             EEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHH
T ss_pred             eecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHH
Confidence            3446688999999998      331   122345678889999999999988764  2335555543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.62  E-value=1.8e-07  Score=49.95  Aligned_cols=55  Identities=13%  Similarity=0.102  Sum_probs=41.9

Q ss_pred             EEEEECCEEEEEEECCCCcCchh----------hHHhhh--hCCcEEEEEEECCChhhHHHHHHHHH
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRP----------LWRHYF--QNTQGLIFVVDSNDRDRIVEARDELH   58 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~----------~~~~~~--~~~~~ii~v~d~~~~~sf~~~~~~~~   58 (65)
                      ..+...+..+.+||++|..++..          .+..++  .+++++++|+|.++.+++..+..++.
T Consensus        41 ~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~  107 (256)
T 3iby_A           41 GEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLF  107 (256)
T ss_dssp             EEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHT
T ss_pred             EEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHH
Confidence            34555678899999999987764          456677  88999999999999877666555544

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.62  E-value=3.8e-07  Score=45.84  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=40.4

Q ss_pred             EEEEECCEEEEEEECCCCcCch------hhHHhhhh--CCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            4 ETVEYKNISFTVWDVGGQDKIR------PLWRHYFQ--NTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~------~~~~~~~~--~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ..+...+..+.+||++|+..+.      ..+..++.  .++++++|+|.++.   +....|+.++.
T Consensus        47 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~  109 (188)
T 2wjg_A           47 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLM  109 (188)
T ss_dssp             EEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---HHHHHHHHHHH
T ss_pred             EEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---HHHHHHHHHHH
Confidence            3456677899999999998874      45666775  48999999998764   44555665554

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.57  E-value=7.4e-07  Score=48.61  Aligned_cols=56  Identities=9%  Similarity=0.130  Sum_probs=44.1

Q ss_pred             EEEC-CEEEEEEECCCCcCch----------hhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            6 VEYK-NISFTVWDVGGQDKIR----------PLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         6 ~~~~-~~~l~~~d~~g~~~~~----------~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      +... +..+.+||++|.....          ..+..+++.++++++|+|+++..++.+...|+..+.
T Consensus        53 ~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~  119 (308)
T 3iev_A           53 KNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK  119 (308)
T ss_dssp             EEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTG
T ss_pred             EecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHH
Confidence            3445 7899999999986544          566788999999999999998888777666565543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.52  E-value=7.8e-07  Score=51.77  Aligned_cols=51  Identities=14%  Similarity=0.162  Sum_probs=43.5

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~   53 (65)
                      ...+...+..+.+||++|+..+...+..+++.++++++|+|.++..+....
T Consensus        74 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~  124 (528)
T 3tr5_A           74 VMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI  124 (528)
T ss_dssp             EEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH
T ss_pred             EEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH
Confidence            345677889999999999999999999999999999999999976554443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.49  E-value=1.5e-06  Score=46.44  Aligned_cols=47  Identities=21%  Similarity=0.357  Sum_probs=36.4

Q ss_pred             EEEECCEEEEEEECCCCcCchhh------HHhhh--hCCcEEEEEEECCChhhHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPL------WRHYF--QNTQGLIFVVDSNDRDRIV   51 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~------~~~~~--~~~~~ii~v~d~~~~~sf~   51 (65)
                      .+...+..+.+||++|..++...      ...++  ..++++++|+|.++.++..
T Consensus        46 ~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~  100 (258)
T 3a1s_A           46 VFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL  100 (258)
T ss_dssp             EEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH
T ss_pred             EEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH
Confidence            45566789999999999887653      24555  4899999999999876643

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.45  E-value=4.1e-07  Score=52.69  Aligned_cols=48  Identities=19%  Similarity=0.445  Sum_probs=40.2

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      ...+.+||++|++.+...+..++++++++++|+|+++.+.   ...|+.++
T Consensus        97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~---~~~~~~~l  144 (535)
T 3dpu_A           97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSN---KHYWLRHI  144 (535)
T ss_dssp             TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGG---HHHHHHHH
T ss_pred             eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchh---HHHHHHHH
Confidence            5789999999999999999999999999999999987654   44455444

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.44  E-value=1.7e-06  Score=49.06  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=37.1

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +......+.+||++|++.+...+..++..++++++|+|+++.
T Consensus        99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g  140 (434)
T 1zun_B           99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG  140 (434)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC
T ss_pred             eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            444667899999999999998888899999999999999874

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.44  E-value=2.9e-06  Score=46.27  Aligned_cols=45  Identities=13%  Similarity=0.140  Sum_probs=36.0

Q ss_pred             EEECCEEEEEEECCCCcC--------chhhHHhhhhCCcEEEEEEECCChhhH
Q 037770            6 VEYKNISFTVWDVGGQDK--------IRPLWRHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~--------~~~~~~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      +...+..+.+|||+|...        +......+++.++++++|+|+++..+.
T Consensus        50 ~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~  102 (301)
T 1wf3_A           50 LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTP  102 (301)
T ss_dssp             EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCH
T ss_pred             EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCCh
Confidence            345678999999999876        445566788999999999999876443

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.42  E-value=9.4e-07  Score=49.70  Aligned_cols=49  Identities=16%  Similarity=0.156  Sum_probs=41.6

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHH
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHR   59 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~   59 (65)
                      ..+.+||++|++.+......++..++++++|+|.++..++.+..+++..
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~  123 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA  123 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHH
Confidence            6889999999999999999999999999999999986655566555543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.41  E-value=1.1e-06  Score=46.88  Aligned_cols=45  Identities=9%  Similarity=0.073  Sum_probs=34.0

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhh---------CCcEEEEEEECCChh
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQ---------NTQGLIFVVDSNDRD   48 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~---------~~~~ii~v~d~~~~~   48 (65)
                      ..+...+..+.+||++|+..+......+++         +++++++|++++...
T Consensus        77 ~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~  130 (262)
T 3def_A           77 VSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA  130 (262)
T ss_dssp             EEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC
T ss_pred             EEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC
Confidence            345667789999999999877655444443         789999999887643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.41  E-value=3.8e-06  Score=47.72  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=36.5

Q ss_pred             EEEEECCEEEEEEECCCCcC---------chhhHHhhhhCCcEEEEEEECCChhhH
Q 037770            4 ETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~---------~~~~~~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      ..+...+..+.+|||+|...         ++..+..+++.++++++|+|.++..+.
T Consensus        42 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~   97 (439)
T 1mky_A           42 DTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITK   97 (439)
T ss_dssp             EEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCH
T ss_pred             EEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCH
Confidence            34555677899999999765         345667899999999999999865443

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.41  E-value=2.6e-06  Score=45.77  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=38.8

Q ss_pred             EEECCEEEEEEECCCCcCch----------hhHHhhh--hCCcEEEEEEECCChhhHHHHHHHHHH
Q 037770            6 VEYKNISFTVWDVGGQDKIR----------PLWRHYF--QNTQGLIFVVDSNDRDRIVEARDELHR   59 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~----------~~~~~~~--~~~~~ii~v~d~~~~~sf~~~~~~~~~   59 (65)
                      +...+..+.+||++|...+.          ..+..++  ..++++++|+|.++.++......++.+
T Consensus        45 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~  110 (274)
T 3i8s_A           45 FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLE  110 (274)
T ss_dssp             EECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred             EEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHh
Confidence            44456788999999988766          2233343  689999999999987776555555443

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.39  E-value=9.6e-07  Score=50.71  Aligned_cols=44  Identities=18%  Similarity=0.202  Sum_probs=38.0

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      .++.....+.+||++|++.+......++..++++++|+|+++..
T Consensus       105 ~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~  148 (483)
T 3p26_A          105 HFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA  148 (483)
T ss_dssp             EEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC--
T ss_pred             EEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCc
Confidence            34556788999999999999999999999999999999998854

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.39  E-value=4.3e-07  Score=45.84  Aligned_cols=42  Identities=14%  Similarity=0.260  Sum_probs=35.1

Q ss_pred             EEEEEECCC----------CcCchhhHHhhhhCC---cEEEEEEECCChhhHHHH
Q 037770           12 SFTVWDVGG----------QDKIRPLWRHYFQNT---QGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus        12 ~l~~~d~~g----------~~~~~~~~~~~~~~~---~~ii~v~d~~~~~sf~~~   53 (65)
                      .+.+||++|          ++.+...+..+++.+   +++++|+|+++..++.+.
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  124 (195)
T 1svi_A           70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV  124 (195)
T ss_dssp             TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH
T ss_pred             cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH
Confidence            578999999          677777888888877   999999999987776554

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.38  E-value=8.5e-07  Score=53.93  Aligned_cols=47  Identities=15%  Similarity=0.121  Sum_probs=41.1

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE   56 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~   56 (65)
                      +..+.+||++|+..+...+..+++.++++|+|+|+++..++.....|
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~  143 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL  143 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence            67899999999999999999999999999999999987776655433

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.37  E-value=7.5e-07  Score=52.49  Aligned_cols=43  Identities=16%  Similarity=0.148  Sum_probs=38.6

Q ss_pred             EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHHH
Q 037770           12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEAR   54 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~~   54 (65)
                      .+.+|||+|+..+...+..+++.++++++|+|+++   +++++.+.
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~  116 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN  116 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH
Confidence            58999999999999999989999999999999998   77776654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.35  E-value=2.2e-06  Score=48.24  Aligned_cols=52  Identities=17%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHH
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH   58 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~   58 (65)
                      +......+.+||++|++.+......++..+|++++|+|.++... .+..+++.
T Consensus        70 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~  121 (405)
T 2c78_A           70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHIL  121 (405)
T ss_dssp             EECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHH
T ss_pred             eccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHH
Confidence            44556889999999999998888889999999999999987543 33444443

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.35  E-value=8.1e-07  Score=51.16  Aligned_cols=48  Identities=13%  Similarity=0.114  Sum_probs=29.9

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhH--------HhhhhCCcEEEEEEECCChhhHH
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLW--------RHYFQNTQGLIFVVDSNDRDRIV   51 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~--------~~~~~~~~~ii~v~d~~~~~sf~   51 (65)
                      ..+...+..+.+|||+|...+...+        ..+++.++++++|+|.+++.++.
T Consensus       274 ~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~  329 (476)
T 3gee_A          274 ECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDD  329 (476)
T ss_dssp             EEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGG
T ss_pred             EEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchh
Confidence            3456677899999999987765433        34788999999999999887764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.35  E-value=1.3e-06  Score=51.64  Aligned_cols=48  Identities=13%  Similarity=0.130  Sum_probs=40.0

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL   57 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~   57 (65)
                      ...+.+||++|+..+...+..+++.++++++|+|.++..++.....|.
T Consensus        70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~  117 (599)
T 3cb4_D           70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY  117 (599)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHH
T ss_pred             eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence            478999999999999999999999999999999998765554444443

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.34  E-value=3.4e-06  Score=44.21  Aligned_cols=44  Identities=18%  Similarity=0.135  Sum_probs=33.2

Q ss_pred             EEEECCEEEEEEECCCCc-----------CchhhHHhhhhCCcEEEEEEECCChh
Q 037770            5 TVEYKNISFTVWDVGGQD-----------KIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~-----------~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      .+...+..+.+||++|..           .+...+..++++++++++|+|+++..
T Consensus        72 ~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~  126 (239)
T 3lxx_A           72 SSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT  126 (239)
T ss_dssp             EEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS
T ss_pred             EEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC
Confidence            455667889999999943           34555566777889999999987543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.34  E-value=2.1e-06  Score=50.77  Aligned_cols=48  Identities=8%  Similarity=0.115  Sum_probs=40.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDEL   57 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~   57 (65)
                      ...+.+||++|+..+...+..++..++++++|+|.++..++.....|.
T Consensus        72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~  119 (600)
T 2ywe_A           72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW  119 (600)
T ss_dssp             EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHH
T ss_pred             eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHH
Confidence            378899999999999998999999999999999999876655554443

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.31  E-value=3.8e-06  Score=47.85  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=37.3

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +...+..+.+||++|++.+......++..+|++++|+|.++.
T Consensus        90 ~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g  131 (439)
T 3j2k_7           90 FETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG  131 (439)
T ss_pred             EecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence            445667899999999999999999999999999999999864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.31  E-value=4.8e-06  Score=49.80  Aligned_cols=52  Identities=17%  Similarity=0.134  Sum_probs=43.3

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHH
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARD   55 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~   55 (65)
                      .++...+..+.+||++|+..+...+..+++.++++++|+|.++..++.....
T Consensus        70 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~  121 (691)
T 1dar_A           70 TTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV  121 (691)
T ss_dssp             EEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH
T ss_pred             EEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH
Confidence            3455567889999999999999999999999999999999998766554433

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.30  E-value=3.9e-06  Score=48.89  Aligned_cols=44  Identities=11%  Similarity=0.195  Sum_probs=38.8

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ..+...+..+.+||++|+..+......+++.++++++|+|.++.
T Consensus        75 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g  118 (529)
T 2h5e_A           75 MQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG  118 (529)
T ss_dssp             EEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC
T ss_pred             EEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc
Confidence            34566788999999999999988888899999999999999864

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.29  E-value=2.5e-06  Score=47.77  Aligned_cols=51  Identities=4%  Similarity=-0.061  Sum_probs=39.1

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHH
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELH   58 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~   58 (65)
                      +...+..+.+||++|++.+.......++.++++++|+| + ...+.+.++++.
T Consensus        55 ~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~  105 (370)
T 2elf_A           55 NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECII  105 (370)
T ss_dssp             ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHH
T ss_pred             EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHH
Confidence            44456789999999999998877788899999999999 4 344445555444

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.29  E-value=2.4e-06  Score=47.48  Aligned_cols=58  Identities=21%  Similarity=0.233  Sum_probs=41.7

Q ss_pred             EEEECC-EEEEEEECCCCc----CchhhHHhhhh---CCcEEEEEEECCC---hhhHHHHHHHHHHHhc
Q 037770            5 TVEYKN-ISFTVWDVGGQD----KIRPLWRHYFQ---NTQGLIFVVDSND---RDRIVEARDELHRMLN   62 (65)
Q Consensus         5 ~~~~~~-~~l~~~d~~g~~----~~~~~~~~~~~---~~~~ii~v~d~~~---~~sf~~~~~~~~~~~~   62 (65)
                      .+...+ ..+.+||++|..    ....+...+++   .++++++|+|+++   +++++++..|+.++..
T Consensus       199 ~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~  267 (342)
T 1lnz_A          199 MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSE  267 (342)
T ss_dssp             EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHH
Confidence            344443 689999999953    34444455554   4999999999998   7888888877777643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.28  E-value=3.3e-06  Score=45.50  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=34.2

Q ss_pred             CEEEEEEECCCCcCch------hhHHhhhh--CCcEEEEEEECCChhhHHH
Q 037770           10 NISFTVWDVGGQDKIR------PLWRHYFQ--NTQGLIFVVDSNDRDRIVE   52 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~------~~~~~~~~--~~~~ii~v~d~~~~~sf~~   52 (65)
                      +..+.+||++|+.++.      ..+..|+.  .++++++|+|+++.++...
T Consensus        48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~   98 (272)
T 3b1v_A           48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLY   98 (272)
T ss_dssp             CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHH
T ss_pred             CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHH
Confidence            4578999999998875      45666776  5999999999998766533

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.28  E-value=4e-06  Score=47.97  Aligned_cols=43  Identities=14%  Similarity=0.081  Sum_probs=38.3

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      .+......+.+||++|++.+......++..++++|+|+|.++.
T Consensus        79 ~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g  121 (458)
T 1f60_A           79 KFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  121 (458)
T ss_dssp             EEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             EEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence            4566778999999999999999888999999999999999864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.28  E-value=7.7e-06  Score=43.71  Aligned_cols=45  Identities=27%  Similarity=0.403  Sum_probs=35.9

Q ss_pred             EEEECCEEEEEEECCCCcCchh------hHHhhh--hCCcEEEEEEECCChhh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~s   49 (65)
                      .+...+..+.+||++|...+..      .+..++  .+++++++|+|.++.++
T Consensus        44 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~   96 (271)
T 3k53_A           44 IMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR   96 (271)
T ss_dssp             EEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH
T ss_pred             EEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh
Confidence            4555677899999999988765      566666  68999999999988643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.27  E-value=3.2e-07  Score=46.03  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=35.2

Q ss_pred             EEEEEECCC-----------CcCchhhHHhhhhC-CcEEEEEEECCChhhHHHH
Q 037770           12 SFTVWDVGG-----------QDKIRPLWRHYFQN-TQGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus        12 ~l~~~d~~g-----------~~~~~~~~~~~~~~-~~~ii~v~d~~~~~sf~~~   53 (65)
                      .+.+||++|           ++.+...+..++++ ++++++|+++.+..++.++
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~   98 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEI   98 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHH
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhH
Confidence            578999999           66677788888887 8888888888888888776

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.26  E-value=5e-07  Score=51.77  Aligned_cols=42  Identities=12%  Similarity=0.107  Sum_probs=26.5

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +...+..+.+||++|++.|......++..++++|+|+|.++.
T Consensus       116 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g  157 (467)
T 1r5b_A          116 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  157 (467)
T ss_dssp             EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             EecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence            334567899999999999998888889999999999999874

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.24  E-value=2.1e-05  Score=41.60  Aligned_cols=56  Identities=9%  Similarity=0.061  Sum_probs=37.3

Q ss_pred             EEEECCEEEEEEECCCCcCch-----------hhHHhhhhCCcEEEEEEECCChhhH-HHHHHHHHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIR-----------PLWRHYFQNTQGLIFVVDSNDRDRI-VEARDELHRM   60 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~-----------~~~~~~~~~~~~ii~v~d~~~~~sf-~~~~~~~~~~   60 (65)
                      .+...+..+.+||++|.....           .....++++++++++|+|+++.... ..+.+++.++
T Consensus        65 ~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~  132 (260)
T 2xtp_A           65 QGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEI  132 (260)
T ss_dssp             EEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHH
T ss_pred             EEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            445567889999999976542           2223477899999999999863322 2333455443

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.20  E-value=1.1e-05  Score=48.29  Aligned_cols=49  Identities=12%  Similarity=0.143  Sum_probs=41.6

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~   53 (65)
                      .+...+..+.+||++|+..+...+..+++.++++++|+|.++..++...
T Consensus        69 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~  117 (693)
T 2xex_A           69 TAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE  117 (693)
T ss_dssp             EEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH
T ss_pred             EEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH
Confidence            3555678899999999999998889999999999999999886655444

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.19  E-value=1e-05  Score=46.71  Aligned_cols=50  Identities=16%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             EEEEECCEEEEEEECCCCc-Cch--------hhHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770            4 ETVEYKNISFTVWDVGGQD-KIR--------PLWRHYFQNTQGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~-~~~--------~~~~~~~~~~~~ii~v~d~~~~~sf~~~   53 (65)
                      ..+...+..+.+||++|.. ...        .....+++.++++++|+|++++.++++.
T Consensus       284 ~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~  342 (482)
T 1xzp_A          284 EEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR  342 (482)
T ss_dssp             EEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH
T ss_pred             EEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH
Confidence            4566678899999999987 543        2234688999999999999988776553

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.17  E-value=5.4e-06  Score=49.03  Aligned_cols=42  Identities=19%  Similarity=0.211  Sum_probs=37.6

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+......+.+||++|++.+......+++.++++|+|+|+++
T Consensus       239 ~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~  280 (611)
T 3izq_1          239 HFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST  280 (611)
T ss_dssp             EEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred             EEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence            355567789999999999999999999999999999999986

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.15  E-value=3.9e-05  Score=42.58  Aligned_cols=58  Identities=10%  Similarity=0.064  Sum_probs=41.1

Q ss_pred             EEEECCEEEEEEECCCCcCch---------hhHHhhhhCCcEEEEEEECCChh--hHHHHHHHHHHHhc
Q 037770            5 TVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNTQGLIFVVDSNDRD--RIVEARDELHRMLN   62 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~---------~~~~~~~~~~~~ii~v~d~~~~~--sf~~~~~~~~~~~~   62 (65)
                      .+......+.+||++|.....         .........++++++|+|+++..  ++.+...++..+..
T Consensus       208 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~  276 (357)
T 2e87_A          208 QFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG  276 (357)
T ss_dssp             EEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred             EEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence            344566789999999985532         12223455789999999999877  67777777776653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.13  E-value=5.2e-06  Score=47.85  Aligned_cols=47  Identities=15%  Similarity=0.106  Sum_probs=39.5

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHH
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEA   53 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~   53 (65)
                      ...+..+.+||++|++.+.......+..+|++++|+|.++   +++++.+
T Consensus        69 ~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l  118 (482)
T 1wb1_A           69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM  118 (482)
T ss_dssp             EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH
T ss_pred             EECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH
Confidence            3456789999999999998888889999999999999987   5555544

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.13  E-value=1.6e-05  Score=47.69  Aligned_cols=40  Identities=10%  Similarity=0.040  Sum_probs=36.0

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhH
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      ..+.+||++|+..+...+..+++.+|++|+|+|.++..+.
T Consensus        82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~  121 (704)
T 2rdo_7           82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP  121 (704)
T ss_pred             eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcH
Confidence            8899999999999988889999999999999999875443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.11  E-value=6.1e-06  Score=46.38  Aligned_cols=42  Identities=19%  Similarity=0.111  Sum_probs=36.3

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +......+.+||++|++.+......++..++++++|+|.++.
T Consensus        61 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g  102 (397)
T 1d2e_A           61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG  102 (397)
T ss_dssp             EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC
T ss_pred             eccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence            344567899999999999888888889999999999999873

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.09  E-value=1.7e-06  Score=49.05  Aligned_cols=43  Identities=26%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             CCEEEEEEECCCCc--------CchhhHHhhhhCCcEEEEEEECCChhhHH
Q 037770            9 KNISFTVWDVGGQD--------KIRPLWRHYFQNTQGLIFVVDSNDRDRIV   51 (65)
Q Consensus         9 ~~~~l~~~d~~g~~--------~~~~~~~~~~~~~~~ii~v~d~~~~~sf~   51 (65)
                      .+..+.+||++|..        .+...+..+++.++++++|+|.++..++.
T Consensus        49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~   99 (436)
T 2hjg_A           49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA   99 (436)
T ss_dssp             CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHH
T ss_pred             CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHH
Confidence            34578999999986        56677788999999999999998765543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.08  E-value=2.2e-05  Score=44.73  Aligned_cols=51  Identities=24%  Similarity=0.198  Sum_probs=35.1

Q ss_pred             EEECC-EEEEEEECCCCcCchhh-------HHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770            6 VEYKN-ISFTVWDVGGQDKIRPL-------WRHYFQNTQGLIFVVDSNDRDRIVEARDE   56 (65)
Q Consensus         6 ~~~~~-~~l~~~d~~g~~~~~~~-------~~~~~~~~~~ii~v~d~~~~~sf~~~~~~   56 (65)
                      +...+ ..+.+||++|+..+...       +..++..++++++|+|.+..+......++
T Consensus        77 ~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~  135 (423)
T 3qq5_A           77 MELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNL  135 (423)
T ss_dssp             EEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHH
T ss_pred             EEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHH
Confidence            33333 38999999999876543       45588899999999999544443333333

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.04  E-value=3.3e-06  Score=47.95  Aligned_cols=55  Identities=15%  Similarity=0.188  Sum_probs=40.0

Q ss_pred             EEEECCEEEEEEECCCC----------cCchhhHH-hhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            5 TVEYKNISFTVWDVGGQ----------DKIRPLWR-HYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~----------~~~~~~~~-~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      .+...+..+.+||++|+          +.+...+. .+++.++++++|+|+++..++.+. +++..+
T Consensus       217 ~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~  282 (436)
T 2hjg_A          217 SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYA  282 (436)
T ss_dssp             EEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHH
T ss_pred             EEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHH
Confidence            34556678999999998          34444443 478899999999999988777665 455444

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.02  E-value=1.1e-05  Score=45.45  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=35.5

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----hhhHHHHH
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----RDRIVEAR   54 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~sf~~~~   54 (65)
                      ..+.+||++|++.+..........+|++++|+|.++    +++++++.
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~  128 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM  128 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH
Confidence            679999999999888777667777899999999984    55565554

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.98  E-value=1.3e-05  Score=40.23  Aligned_cols=49  Identities=18%  Similarity=0.237  Sum_probs=35.4

Q ss_pred             EEEEEEECCC----------CcCchhhHHhhhhCC---cEEEEEEECCChhh--HHHHHHHHHH
Q 037770           11 ISFTVWDVGG----------QDKIRPLWRHYFQNT---QGLIFVVDSNDRDR--IVEARDELHR   59 (65)
Q Consensus        11 ~~l~~~d~~g----------~~~~~~~~~~~~~~~---~~ii~v~d~~~~~s--f~~~~~~~~~   59 (65)
                      ..+.+||++|          ++.+...+..+++.+   +++++|+|.++..+  ...+.+|+..
T Consensus        68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~  131 (195)
T 3pqc_A           68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS  131 (195)
T ss_dssp             TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH
Confidence            3577999999          666777888888876   89999999886533  3344445443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.94  E-value=3.5e-05  Score=41.16  Aligned_cols=42  Identities=10%  Similarity=0.092  Sum_probs=30.1

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHH-------hh--hhCCcEEEEEEECCC
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWR-------HY--FQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~-------~~--~~~~~~ii~v~d~~~   46 (65)
                      .+...+..+.+||++|...+.....       .+  .++++++++|+|++.
T Consensus        81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~  131 (270)
T 1h65_A           81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA  131 (270)
T ss_dssp             EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC
T ss_pred             EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCC
Confidence            3556778999999999876542211       11  347899999999865

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.93  E-value=2.3e-05  Score=44.16  Aligned_cols=44  Identities=14%  Similarity=0.123  Sum_probs=35.0

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC----hhhHHHHH
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----RDRIVEAR   54 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~sf~~~~   54 (65)
                      ..+.+||++|++.+..........+|++++|+|.++    +++.+++.
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~  130 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM  130 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH
Confidence            679999999998887766666778899999999984    45555543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.91  E-value=3e-05  Score=44.63  Aligned_cols=55  Identities=11%  Similarity=0.140  Sum_probs=31.7

Q ss_pred             EEEECCEEEEEEECCCCcCchhhH--------HhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLW--------RHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~--------~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      .+...+..+.+||++|.......+        ..++..++++++|+|.+++.+... .+++..+
T Consensus       266 ~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l  328 (462)
T 3geh_A          266 QLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV  328 (462)
T ss_dssp             EEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH
T ss_pred             EEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc
Confidence            455677889999999986654332        236788999999999998766544 3444433

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.89  E-value=1.2e-05  Score=41.33  Aligned_cols=39  Identities=21%  Similarity=0.293  Sum_probs=29.2

Q ss_pred             CEEEEEEECCCC----------cCchhhHHhhhhC---CcEEEEEEECCChh
Q 037770           10 NISFTVWDVGGQ----------DKIRPLWRHYFQN---TQGLIFVVDSNDRD   48 (65)
Q Consensus        10 ~~~l~~~d~~g~----------~~~~~~~~~~~~~---~~~ii~v~d~~~~~   48 (65)
                      ...+.+||++|.          +.+......+++.   ++++++|+|.++..
T Consensus        78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~  129 (223)
T 4dhe_A           78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL  129 (223)
T ss_dssp             SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC
T ss_pred             CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC
Confidence            467899999994          3335566677776   67799999998753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.89  E-value=2.2e-05  Score=44.83  Aligned_cols=44  Identities=18%  Similarity=0.336  Sum_probs=34.9

Q ss_pred             EEEECCEEEEEEECCC----------CcCchhhHH-hhhhCCcEEEEEEECCChh
Q 037770            5 TVEYKNISFTVWDVGG----------QDKIRPLWR-HYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g----------~~~~~~~~~-~~~~~~~~ii~v~d~~~~~   48 (65)
                      .+...+..+.+||++|          ++.+...+. .+++.++++++|+|.++.-
T Consensus       237 ~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~  291 (456)
T 4dcu_A          237 SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI  291 (456)
T ss_dssp             EEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC
T ss_pred             EEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCc
Confidence            4556677899999999          666766655 4788999999999998743

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.88  E-value=8.3e-06  Score=47.39  Aligned_cols=44  Identities=23%  Similarity=0.236  Sum_probs=36.9

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC---hhhHHHH
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRIVEA   53 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~sf~~~   53 (65)
                      +..+.+||++|++.+...+......+|++++|+|.++   +++.+.+
T Consensus        50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l   96 (501)
T 1zo1_I           50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI   96 (501)
T ss_dssp             SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH
Confidence            3467899999999999999889999999999999987   5555444

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.82  E-value=4.6e-06  Score=47.57  Aligned_cols=39  Identities=26%  Similarity=0.435  Sum_probs=33.1

Q ss_pred             CCEEEEEEECCC--------CcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            9 KNISFTVWDVGG--------QDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         9 ~~~~l~~~d~~g--------~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      .+..+.+||++|        ++.++..+..+++.++++++|+|..+.
T Consensus        69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~  115 (456)
T 4dcu_A           69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG  115 (456)
T ss_dssp             CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC
T ss_pred             CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC
Confidence            346789999999        667778889999999999999998753

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.75  E-value=0.00024  Score=42.50  Aligned_cols=44  Identities=9%  Similarity=0.119  Sum_probs=38.5

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      .+......+.+||++|+..+...+..+++.++++++|+|.++..
T Consensus        68 ~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~  111 (665)
T 2dy1_A           68 PLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV  111 (665)
T ss_dssp             EEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS
T ss_pred             EEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCccc
Confidence            45567789999999999999988999999999999999987543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.74  E-value=3.8e-05  Score=48.74  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=36.5

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ++.....+.+||++|++.+......++..++++|+|+|.++.
T Consensus       354 f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG  395 (1289)
T 3avx_A          354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG  395 (1289)
T ss_dssp             EECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC
T ss_pred             EcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence            344567899999999999988888889999999999999874

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.73  E-value=4.2e-05  Score=43.40  Aligned_cols=43  Identities=16%  Similarity=0.213  Sum_probs=24.8

Q ss_pred             EEEEEEECCCCcCchh-------hHHhhhhCCcEEEEEEECCChhhHHHH
Q 037770           11 ISFTVWDVGGQDKIRP-------LWRHYFQNTQGLIFVVDSNDRDRIVEA   53 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~-------~~~~~~~~~~~ii~v~d~~~~~sf~~~   53 (65)
                      ..+.+||++|......       .+..+++.++++++|+|+++.+++.++
T Consensus        86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v  135 (396)
T 2ohf_A           86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHV  135 (396)
T ss_dssp             CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---------
T ss_pred             cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhh
Confidence            3589999999877543       567788999999999999876665443

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.73  E-value=4.4e-05  Score=44.75  Aligned_cols=49  Identities=14%  Similarity=0.244  Sum_probs=37.2

Q ss_pred             EEEEEECCCCcC-----------chhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770           12 SFTVWDVGGQDK-----------IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus        12 ~l~~~d~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      .+.+||++|...           +...+..++..++++++|+|.++.....+...++..+
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l  214 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL  214 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH
Confidence            578999999875           4466677889999999999998765445555555554

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.72  E-value=0.00045  Score=38.69  Aligned_cols=44  Identities=18%  Similarity=0.151  Sum_probs=32.4

Q ss_pred             EEEEECCEEEEEEECCCCcC---------chhhHHhhhhCCcEEEEEEECCChh
Q 037770            4 ETVEYKNISFTVWDVGGQDK---------IRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~---------~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      ..+...+..+.+||++|...         ++..+. .+..++.+++|+|++++.
T Consensus       219 ~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~  271 (364)
T 2qtf_A          219 YAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSE  271 (364)
T ss_dssp             EEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCH
T ss_pred             EEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCc
Confidence            45666677889999999622         223333 567899999999998876

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.69  E-value=6.8e-06  Score=48.08  Aligned_cols=38  Identities=24%  Similarity=0.216  Sum_probs=34.4

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      ..+.+||++|++.+...+..++..++++++|+|.++..
T Consensus        52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~   89 (537)
T 3izy_P           52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGV   89 (537)
T ss_dssp             SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCC
T ss_pred             CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCc
Confidence            46889999999999999999999999999999998743

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.68  E-value=0.0003  Score=39.56  Aligned_cols=36  Identities=14%  Similarity=0.132  Sum_probs=28.6

Q ss_pred             EEEEEEECCCCcCchh-------hHHhhhhCCcEEEEEEECCC
Q 037770           11 ISFTVWDVGGQDKIRP-------LWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~-------~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..+.+||++|..+...       ....+++.++++++|+|+++
T Consensus        66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            5799999999987531       22346789999999999986

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.63  E-value=0.00015  Score=38.82  Aligned_cols=49  Identities=20%  Similarity=0.244  Sum_probs=33.0

Q ss_pred             CEEEEEEECCCCc-------------CchhhHHhhhhCCcEEE-EEEECCChhhHHHHHHHHH
Q 037770           10 NISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLI-FVVDSNDRDRIVEARDELH   58 (65)
Q Consensus        10 ~~~l~~~d~~g~~-------------~~~~~~~~~~~~~~~ii-~v~d~~~~~sf~~~~~~~~   58 (65)
                      ...+.+||++|..             .+......|++.+++++ +|+|.++..+..+...++.
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~  186 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK  186 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHH
Confidence            3689999999964             24456677888888777 6899986544333333433

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.55  E-value=0.00025  Score=40.14  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=23.7

Q ss_pred             EEEEEEECCCCcCc----hhhHH---hhhhCCcEEEEEEECCCh
Q 037770           11 ISFTVWDVGGQDKI----RPLWR---HYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus        11 ~~l~~~d~~g~~~~----~~~~~---~~~~~~~~ii~v~d~~~~   47 (65)
                      ..+.+||++|....    +.+..   .+++.++++++|+|+++.
T Consensus        71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            67999999998542    22222   456899999999999875

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.47  E-value=0.00023  Score=42.80  Aligned_cols=45  Identities=20%  Similarity=0.277  Sum_probs=35.3

Q ss_pred             EEEEEECCCCcC---chhhHHhhhhCCcEEEEEEECCChhhHHHHHHH
Q 037770           12 SFTVWDVGGQDK---IRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDE   56 (65)
Q Consensus        12 ~l~~~d~~g~~~---~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~   56 (65)
                      .+.+||+||...   .......+++.++++++|+|.++..+..+...+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l  222 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL  222 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH
Confidence            588999999654   445667889999999999999987776665444

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.42  E-value=0.00024  Score=38.39  Aligned_cols=38  Identities=24%  Similarity=0.434  Sum_probs=29.7

Q ss_pred             CCEEEEEEECCCCcC-------------chhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~-------------~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ....+.+||++|...             +......++..++++++|+|.++
T Consensus       129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~  179 (315)
T 1jwy_B          129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN  179 (315)
T ss_dssp             TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred             CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence            346799999999754             44566788899999999999753

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.34  E-value=0.00051  Score=38.10  Aligned_cols=39  Identities=21%  Similarity=0.495  Sum_probs=31.9

Q ss_pred             CEEEEEEECCCCcCc-------------hhhHHhhhhCCcEEEEEEECCChh
Q 037770           10 NISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      ...+.+||++|....             ......|+.+++++++|++.++.+
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~  186 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD  186 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC
Confidence            457899999998776             566788999999999999876543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.32  E-value=0.00041  Score=37.77  Aligned_cols=41  Identities=15%  Similarity=0.115  Sum_probs=30.8

Q ss_pred             EEECCEEEEEEECCCCc-C--------chhhHHhhhhCCcEEEEEEECCC
Q 037770            6 VEYKNISFTVWDVGGQD-K--------IRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~-~--------~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +...+..+.+||++|.. .        +......+++.++++++|+|.++
T Consensus        51 ~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~  100 (301)
T 1ega_A           51 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR  100 (301)
T ss_dssp             EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC
T ss_pred             EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence            44567889999999987 2        22233556788999999999976

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.26  E-value=0.00026  Score=38.63  Aligned_cols=50  Identities=16%  Similarity=0.015  Sum_probs=38.7

Q ss_pred             EEEEEEE-C-----CCCcCchhhHHhhhhCCcEEEEEEECCChh-hHHHHHHHHHHH
Q 037770           11 ISFTVWD-V-----GGQDKIRPLWRHYFQNTQGLIFVVDSNDRD-RIVEARDELHRM   60 (65)
Q Consensus        11 ~~l~~~d-~-----~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-sf~~~~~~~~~~   60 (65)
                      +.+..+| .     ..++++..+...++.++|++++|+|+++++ ++..+..|+..+
T Consensus        50 V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~  106 (302)
T 2yv5_A           50 VWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVY  106 (302)
T ss_dssp             EEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHH
T ss_pred             EEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            4556665 2     236777777788999999999999999886 788888887654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.24  E-value=1.6e-05  Score=46.86  Aligned_cols=38  Identities=16%  Similarity=0.121  Sum_probs=22.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+..+.+||++|+..+......++..++++|+|+|.++
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~  290 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ  290 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            34678899999999998888888999999999999974

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.17  E-value=0.0039  Score=35.11  Aligned_cols=37  Identities=11%  Similarity=0.065  Sum_probs=28.8

Q ss_pred             CEEEEEEECCCCcCch-------hhHHhhhhCCcEEEEEEECCC
Q 037770           10 NISFTVWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~-------~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ...+.+||++|.....       .....+++.++++++|+|.++
T Consensus        68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            3579999999987642       233446889999999999986

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.00  E-value=0.0033  Score=33.64  Aligned_cols=38  Identities=16%  Similarity=0.342  Sum_probs=24.9

Q ss_pred             CCEEEEEEECCCCc-------CchhhH-------HhhhhC-------------CcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQD-------KIRPLW-------RHYFQN-------------TQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~-------~~~~~~-------~~~~~~-------------~~~ii~v~d~~~   46 (65)
                      ..+.+.+||++|..       .+....       ..|+..             +++++++++.++
T Consensus        63 ~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~  127 (274)
T 3t5d_A           63 VQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG  127 (274)
T ss_dssp             CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCC
T ss_pred             eEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCC
Confidence            34689999999973       233333       344443             668888887665

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=96.99  E-value=0.0038  Score=36.80  Aligned_cols=44  Identities=14%  Similarity=0.244  Sum_probs=38.3

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..++..++..+++.||||+..|..=-...++-+|++++|+|...
T Consensus        92 ~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~  135 (548)
T 3vqt_A           92 VMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK  135 (548)
T ss_dssp             EEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT
T ss_pred             eEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC
Confidence            34567788999999999999998877788999999999999974

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.68  E-value=0.0047  Score=35.22  Aligned_cols=48  Identities=10%  Similarity=0.121  Sum_probs=31.1

Q ss_pred             EEEECCEEEEEEECCCCcCchhhH------------HhhhhCCcEEEEEEECCChhhHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLW------------RHYFQNTQGLIFVVDSNDRDRIVE   52 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~------------~~~~~~~~~ii~v~d~~~~~sf~~   52 (65)
                      .+...+..+.+||++|..+.....            ..++..++++++|+|.++..+..+
T Consensus       222 ~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~  281 (439)
T 1mky_A          222 EVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD  281 (439)
T ss_dssp             EEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred             EEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH
Confidence            345566788999999975433221            346778999999999987655443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.66  E-value=0.00042  Score=38.69  Aligned_cols=28  Identities=29%  Similarity=0.559  Sum_probs=15.2

Q ss_pred             EEEEEEECCCC-------cCchhhHH-------hhhhCCcEE
Q 037770           11 ISFTVWDVGGQ-------DKIRPLWR-------HYFQNTQGL   38 (65)
Q Consensus        11 ~~l~~~d~~g~-------~~~~~~~~-------~~~~~~~~i   38 (65)
                      +.+.+||++|.       +.+..++.       .|++.+.++
T Consensus        95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~  136 (361)
T 2qag_A           95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGL  136 (361)
T ss_dssp             EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCS
T ss_pred             cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            47899999999       66777766       777766554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.32  E-value=0.056  Score=30.98  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=33.2

Q ss_pred             EEEEEEECCCCcCc----hhhHH---hhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770           11 ISFTVWDVGGQDKI----RPLWR---HYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus        11 ~~l~~~d~~g~~~~----~~~~~---~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      ..+.+||++|....    ..+..   .....++.++.++|++ .+.+.++..+.+++
T Consensus       205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el  260 (416)
T 1udx_A          205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEV  260 (416)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHH
T ss_pred             ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHH
Confidence            67899999997432    11222   2345689999999998 56677776665554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.03  E-value=0.02  Score=28.98  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=26.0

Q ss_pred             EEEEEECCCCcC----------chhhHHhhh---hCCcEEEEEEECCChhhH
Q 037770           12 SFTVWDVGGQDK----------IRPLWRHYF---QNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus        12 ~l~~~d~~g~~~----------~~~~~~~~~---~~~~~ii~v~d~~~~~sf   50 (65)
                      .+.+||++|...          ++.....++   ...+++++++|+++..++
T Consensus        73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~  124 (210)
T 1pui_A           73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD  124 (210)
T ss_dssp             TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH
T ss_pred             CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch
Confidence            467999999743          222223344   468899999999876554

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=95.94  E-value=0.06  Score=32.69  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=33.1

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +..+++.||||+..|..=-...++-+||+++|+|...
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave  120 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS  120 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC
Confidence            5789999999999998877788999999999999973

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=95.48  E-value=0.0042  Score=37.16  Aligned_cols=40  Identities=15%  Similarity=0.287  Sum_probs=34.8

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..++..+++.||||+..|..--....+-+|++++|+|...
T Consensus        63 ~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~  102 (638)
T 3j25_A           63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD  102 (638)
T ss_dssp             BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSC
T ss_pred             EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCC
Confidence            3456778999999999998888888999999999999973

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=94.40  E-value=0.072  Score=29.54  Aligned_cols=36  Identities=28%  Similarity=0.471  Sum_probs=24.2

Q ss_pred             CEEEEEEECCCCcC-------------chhhHHhhhhCCcEEEEEE-ECC
Q 037770           10 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVV-DSN   45 (65)
Q Consensus        10 ~~~l~~~d~~g~~~-------------~~~~~~~~~~~~~~ii~v~-d~~   45 (65)
                      ...+.+||++|...             +..+...|+...+.+++++ +.+
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~  178 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPAN  178 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETT
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCC
Confidence            46799999999632             3445567777776666554 554

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.53  Score=26.76  Aligned_cols=47  Identities=15%  Similarity=0.114  Sum_probs=33.8

Q ss_pred             EEEEEECCEEEEEEECCCCcCch-------hhHHhhhhCCcEEEEEEECCChhh
Q 037770            3 VETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~-------~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      ...+...+..+.+.|++|-..-.       .......+.++.+++|+|.+++..
T Consensus       111 ~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~  164 (376)
T 4a9a_A          111 PGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH  164 (376)
T ss_dssp             EEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH
T ss_pred             eEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH
Confidence            34566788899999999964422       112345678999999999998743

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=93.34  E-value=0.57  Score=26.77  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=27.3

Q ss_pred             EEEEEEECCCCcC-------chhhHHhhhhCCcEEEEEEECCC
Q 037770           11 ISFTVWDVGGQDK-------IRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        11 ~~l~~~d~~g~~~-------~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..+.+||++|...       ....+..+++.+++++.|+|+.+
T Consensus        85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4688999999433       34455667789999999999874

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=92.77  E-value=0.16  Score=26.61  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=23.2

Q ss_pred             EEEEEEECCCCcCchhhHH------hhhhCCcEEEEEEECCC
Q 037770           11 ISFTVWDVGGQDKIRPLWR------HYFQNTQGLIFVVDSND   46 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~------~~~~~~~~ii~v~d~~~   46 (65)
                      ..+.++|++|.........      ..+.. +.+++++|.+.
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~  149 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEI  149 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhh
Confidence            4688999999876543221      13455 78888887653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=92.48  E-value=0.19  Score=27.98  Aligned_cols=37  Identities=5%  Similarity=0.028  Sum_probs=26.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      .+..+.++|++|...   ........++.+++|+|.+..+
T Consensus       170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~  206 (355)
T 3p32_A          170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGD  206 (355)
T ss_dssp             TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTC
T ss_pred             CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCc
Confidence            457789999999543   2334457899999999876543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=91.77  E-value=0.14  Score=28.37  Aligned_cols=36  Identities=8%  Similarity=0.056  Sum_probs=25.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      +..+.++|++|......   .....+|++++|+|.+..+
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~  183 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGD  183 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC----
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccH
Confidence            56799999999755432   3468999999999987543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=90.61  E-value=0.2  Score=28.15  Aligned_cols=29  Identities=14%  Similarity=0.087  Sum_probs=24.3

Q ss_pred             CCcCchhhHHhhhhCCcEEEEEEECCChh
Q 037770           20 GQDKIRPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus        20 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      ..+.|+..+..+++.++++++|+|++++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~   83 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN   83 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc
Confidence            35678888899999999999999999864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=90.09  E-value=0.21  Score=28.06  Aligned_cols=30  Identities=13%  Similarity=0.132  Sum_probs=24.3

Q ss_pred             CCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770           20 GQDKIRPLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus        20 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      .++.++.....++..++.+++|+|++++.+
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~   86 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG   86 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC
Confidence            467788888888899999999999998763

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=89.45  E-value=0.53  Score=26.23  Aligned_cols=38  Identities=5%  Similarity=0.028  Sum_probs=24.8

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      .+..+.++|++|-..   ........++.+++|+|.+..+.
T Consensus       165 ~~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~  202 (349)
T 2www_A          165 AGYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDE  202 (349)
T ss_dssp             TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC----
T ss_pred             CCCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchh
Confidence            345678999999532   23445678999999999876543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=81.63  E-value=0.71  Score=25.15  Aligned_cols=20  Identities=25%  Similarity=0.388  Sum_probs=11.8

Q ss_pred             CEEEEEEECCCC-------cCchhhHH
Q 037770           10 NISFTVWDVGGQ-------DKIRPLWR   29 (65)
Q Consensus        10 ~~~l~~~d~~g~-------~~~~~~~~   29 (65)
                      ...+.+||++|.       +.+.....
T Consensus        75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~  101 (301)
T 2qnr_A           75 KLRLTVVDTPGYGDAINCRDCFKTIIS  101 (301)
T ss_dssp             CEEEEEEEEC-----------CTTHHH
T ss_pred             ccCcchhhhhhhhhhcCcHHHHHHHHH
Confidence            468899999998       55555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	65
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-10
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-09
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-08
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-08
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-07
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-07
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-06
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-05
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	4e-05
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-05
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-05
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-04
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	8e-04

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (117), Expect = 6e-10
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV 64
            +  K +   +WD  GQ++ R +   Y++   G+I V D  D       +     +    
Sbjct: 45  DINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA 104

Query: 65  C 65
            
Sbjct: 105 N 105

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (113), Expect = 3e-09
 Identities = 12/61 (19%), Positives = 26/61 (42%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV 64
            ++ K I   +WD  GQ++ R +   Y++   G++ V D  +       R+ +  +    
Sbjct: 49  ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 108

Query: 65  C 65
            
Sbjct: 109 S 109

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (110), Expect = 1e-08
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV 64
            ++ K +   +WD  GQ++ R +   Y++ + G+I V D  D++     +  L  +    
Sbjct: 49  ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 108

Query: 65  C 65
            
Sbjct: 109 T 109

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (110), Expect = 1e-08
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRDRI 50
                 +   ++F ++DVGGQ   R  W   F +   +IFVV          + N  +R+
Sbjct: 37  IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL 96

Query: 51  VEARDELHRMLNE 63
            EA +    + N 
Sbjct: 97  QEALNLFKSIWNN 109

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-07
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           +V+       +WD  GQ++ R L   Y++  QG+I V D   RD  V+  + L+ +
Sbjct: 50  SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNEL 105

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (99), Expect = 3e-07
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 6   VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC 65
              K I   +WD  GQ++ R +   Y++   G I + D  + +     +D   ++     
Sbjct: 49  RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 108

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 6e-06
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEV 64
            V  K +   +WD  GQ++ R + R Y++   G + V D   R+      + L       
Sbjct: 48  NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA 107

Query: 65  C 65
            
Sbjct: 108 S 108

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 9e-06
 Identities = 57/65 (87%), Positives = 60/65 (92%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
          FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ EAR+EL RM
Sbjct: 34 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 93

Query: 61 LNEVC 65
          L E  
Sbjct: 94 LAEDE 98

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 1e-05
 Identities = 37/63 (58%), Positives = 45/63 (71%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           FNVET+ YKN+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH M
Sbjct: 51  FNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLM 110

Query: 61  LNE 63
           L E
Sbjct: 111 LQE 113

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 4e-05
 Identities = 10/56 (17%), Positives = 24/56 (42%)

Query: 5   TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
            +  + +   +WD  GQ++ R + + Y+++   LI   D    +      + L  +
Sbjct: 48  EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI 103

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 5e-05
 Identities = 10/60 (16%), Positives = 25/60 (41%)

Query: 6   VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEVC 65
           V+   +   +WD  GQ++ R +   Y+++   L+ + D  ++      +  L  +     
Sbjct: 51  VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 110

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 6e-05
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 1   FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
            N  + +   +   +WD  GQ++ R L   +F++  G + + D   +   +  R+ + ++
Sbjct: 54  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 113

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (81), Expect = 1e-04
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
           +    E KN+ F + DVGGQ   R  W   F +   ++F+V S++ D+++    + +R+
Sbjct: 34 IHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRL 93

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.0 bits (74), Expect = 8e-04
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 1  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM 60
                 +K++ F ++DVGGQ   R  W H F+    +IF V  +D D ++   +E++RM
Sbjct: 32 IVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM 91

Query: 61 L 61
           
Sbjct: 92 H 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.54
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.5
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.5
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.5
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.49
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.49
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.48
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.48
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.48
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.47
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.46
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.44
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.44
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.41
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.4
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.36
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.34
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.34
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.34
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.31
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.25
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.24
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.22
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.19
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.18
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.16
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.14
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.05
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.05
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.01
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.58
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.45
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.43
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.11
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.92
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.64
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.49
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.43
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.36
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.34
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.3
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.21
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.12
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.96
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.92
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.86
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.66
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.25
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	96.09
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.8
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.78
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.45
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.36
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	89.44
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	87.54
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	85.65
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	84.34
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	84.26
d1pt6a_	192	Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId	81.69
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	80.22

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.1e-15  Score=74.78  Aligned_cols=55  Identities=20%  Similarity=0.185  Sum_probs=43.7

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +..+.+.+||++|++.++..+..++++++++++|||++++++|+++..|+.++..
T Consensus        45 ~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~   99 (168)
T d2gjsa1          45 GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRR   99 (168)
T ss_dssp             TEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhc
Confidence            3457899999999999999999999999999999999999999999999988754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.5e-15  Score=73.96  Aligned_cols=55  Identities=13%  Similarity=0.351  Sum_probs=49.8

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+.+.+||++|++.+...++.++++++++++|||+++++||+++.+|+.+++.+
T Consensus        48 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~  102 (177)
T d1kmqa_          48 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH  102 (177)
T ss_dssp             EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             cceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            4478999999999999999999999999999999999999999998887776553

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.54  E-value=2.8e-14  Score=70.28  Aligned_cols=62  Identities=29%  Similarity=0.838  Sum_probs=57.1

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++..++..++.+.+||++|+..+...|..++.+++++++|+|++++++|.+...++..++++
T Consensus        38 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~   99 (164)
T d1zd9a1          38 NMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK   99 (164)
T ss_dssp             EEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred             eeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhh
Confidence            45677889999999999999999999999999999999999999999999999999888764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.7e-15  Score=73.72  Aligned_cols=55  Identities=9%  Similarity=0.206  Sum_probs=49.5

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+.+.+||++|++.++..+..++++++++++|||+++++||+++.+|+.+.+..
T Consensus        49 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~  103 (191)
T d2ngra_          49 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH  103 (191)
T ss_dssp             EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             ceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhh
Confidence            3478999999999999999999999999999999999999999998887776543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.6e-14  Score=72.48  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||+++++||+++..|+.++++
T Consensus        55 ~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~  108 (185)
T d2atxa1          55 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK  108 (185)
T ss_dssp             CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             ceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999998877776654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.2e-14  Score=72.17  Aligned_cols=53  Identities=21%  Similarity=0.565  Sum_probs=40.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...++.++++++++|+|||++++++|..+..|+..+.+
T Consensus        54 ~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  106 (173)
T d2fu5c1          54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE  106 (173)
T ss_dssp             EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhh
Confidence            47889999999999999999999999999999999999999999999888754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.50  E-value=1.2e-13  Score=68.91  Aligned_cols=62  Identities=58%  Similarity=1.069  Sum_probs=52.9

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ++..+..+++.+.+||++|++.++..+..++.+++++++|+|++++.++.++.+++.+++++
T Consensus        52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~  113 (182)
T d1moza_          52 NVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE  113 (182)
T ss_dssp             CEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTS
T ss_pred             EEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHh
Confidence            45677888999999999999999999999999999999999999999999999999887765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.49  E-value=2.6e-13  Score=67.21  Aligned_cols=62  Identities=50%  Similarity=0.965  Sum_probs=56.7

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +++++..+++.+.+||++|++.++..|..+++.++++++|+|+++..++.++..++.++..+
T Consensus        51 ~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~  112 (176)
T d1fzqa_          51 NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE  112 (176)
T ss_dssp             EEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTC
T ss_pred             eEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhh
Confidence            46677888999999999999999999999999999999999999999999999998887654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.4e-14  Score=71.79  Aligned_cols=55  Identities=16%  Similarity=0.318  Sum_probs=50.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..+.+.+||++|++.+...++.++++++++++|||+++++||.+++.|+.++.+.
T Consensus        50 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~  104 (169)
T d1x1ra1          50 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV  104 (169)
T ss_dssp             EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhh
Confidence            3478899999999999999999999999999999999999999999999987653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-14  Score=70.75  Aligned_cols=54  Identities=19%  Similarity=0.482  Sum_probs=49.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...++.++++++++++|+|++++.+|..+.+|+..+.+
T Consensus        52 ~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  105 (171)
T d2ew1a1          52 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ  105 (171)
T ss_dssp             EEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcc
Confidence            347889999999999999999999999999999999999999999999888754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.48  E-value=3e-13  Score=67.02  Aligned_cols=61  Identities=77%  Similarity=1.342  Sum_probs=55.7

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.......+.+.+||++|+..++..+..++++++++++|+|+++.+++.++.+++...+++
T Consensus        48 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~  108 (173)
T d1e0sa_          48 VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND  108 (173)
T ss_dssp             EEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS
T ss_pred             EEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhh
Confidence            4556778899999999999999999999999999999999999999999999999887764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=3.4e-14  Score=71.71  Aligned_cols=54  Identities=24%  Similarity=0.592  Sum_probs=49.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+..+|+.++++++++|+|||++++++|..+..++..+.+
T Consensus        53 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~  106 (194)
T d2bcgy1          53 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR  106 (194)
T ss_dssp             EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhh
Confidence            457899999999999999999999999999999999999999999988887654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=9.9e-14  Score=68.62  Aligned_cols=53  Identities=21%  Similarity=0.534  Sum_probs=48.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.+...++.++++++++|+|||+++++++....+|+..+..
T Consensus        53 ~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~  105 (169)
T d3raba_          53 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT  105 (169)
T ss_dssp             EEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             eEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhc
Confidence            36889999999999999999999999999999999999999999988876543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.8e-13  Score=66.42  Aligned_cols=59  Identities=24%  Similarity=0.541  Sum_probs=51.6

Q ss_pred             EEEEECC--EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            4 ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         4 ~~~~~~~--~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .++...+  +.+.+||++|++.+...++.++.+++++++|||++++++|+++..|+.++..
T Consensus        43 ~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~  103 (170)
T d1ek0a_          43 QRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHE  103 (170)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhcc
Confidence            3444443  7899999999999999999999999999999999999999999999877654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.9e-14  Score=69.75  Aligned_cols=53  Identities=17%  Similarity=0.527  Sum_probs=41.1

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|++.++..++.++++++++++|||++++++|..+..++..+.+
T Consensus        55 ~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  107 (170)
T d2g6ba1          55 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE  107 (170)
T ss_dssp             EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhh
Confidence            36889999999999999999999999999999999999999999999887654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-14  Score=72.26  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=50.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|+..+...++.++++++++++|||+++++||+++.+|+..+.+
T Consensus        50 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~  103 (170)
T d1i2ma_          50 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR  103 (170)
T ss_dssp             CCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHH
T ss_pred             ccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhh
Confidence            558899999999999999999999999999999999999999999999987764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=5.1e-14  Score=70.40  Aligned_cols=55  Identities=9%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++.+.+.+||++|++.+...++.++++++++++|||+++++||+.+.+++...+.
T Consensus        47 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~  101 (179)
T d1m7ba_          47 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ  101 (179)
T ss_dssp             SCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             ceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHh
Confidence            4558899999999999999999999999999999999999999999988877654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.8e-14  Score=69.06  Aligned_cols=53  Identities=25%  Similarity=0.607  Sum_probs=42.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ....+.+||++|+..++..++.++++++++++|||+++++||+++..|++.+.
T Consensus        50 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~  102 (167)
T d1z08a1          50 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR  102 (167)
T ss_dssp             CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             ccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcc
Confidence            45889999999999999999999999999999999999999999999988764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.5e-14  Score=69.14  Aligned_cols=55  Identities=16%  Similarity=0.358  Sum_probs=51.0

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+.+||++|+..+...++.++++++++++|||+++++||+++..|+..+.+
T Consensus        48 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~  102 (167)
T d1c1ya_          48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR  102 (167)
T ss_dssp             SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             eeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999999999999988764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-13  Score=68.27  Aligned_cols=54  Identities=26%  Similarity=0.534  Sum_probs=49.6

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.++..+..++++++++++|||+++.++|..+..|+..+.+
T Consensus        51 ~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~  104 (166)
T d1z0fa1          51 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN  104 (166)
T ss_dssp             EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHh
Confidence            447899999999999999999999999999999999999999999999887653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-13  Score=68.21  Aligned_cols=54  Identities=20%  Similarity=0.436  Sum_probs=49.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|+.+.+|+..+.+
T Consensus        52 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  105 (173)
T d2fn4a1          52 IPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR  105 (173)
T ss_dssp             EEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             eeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHH
Confidence            347889999999999999999999999999999999999999999999888754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=4.1e-14  Score=69.78  Aligned_cols=54  Identities=22%  Similarity=0.574  Sum_probs=48.4

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.++..++.++++++++++|||++++++|+.+..++..+..
T Consensus        49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  102 (166)
T d1g16a_          49 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE  102 (166)
T ss_dssp             CEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhc
Confidence            447888999999999999999999999999999999999999999888766543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.2e-13  Score=68.24  Aligned_cols=55  Identities=13%  Similarity=0.216  Sum_probs=50.0

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ++.+.+.+||++|++.+...+..++++++++++|||++++++|.++..|+.++.+
T Consensus        47 ~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~  101 (171)
T d2erxa1          47 KSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE  101 (171)
T ss_dssp             TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred             cccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhh
Confidence            3447889999999999999999999999999999999999999999999887654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-13  Score=67.80  Aligned_cols=56  Identities=16%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +..+.+.+||++|...+..++..++++++++++|||++++++|..+..|+.++.+.
T Consensus        49 ~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~  104 (167)
T d1xtqa1          49 GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM  104 (167)
T ss_dssp             TEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhc
Confidence            34578899999999999999999999999999999999999999999999888653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.7e-13  Score=66.60  Aligned_cols=55  Identities=20%  Similarity=0.489  Sum_probs=50.8

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..+.+.+||++|++.+...+..++.+++++++|||++++++|.++.+|+.++.+.
T Consensus        47 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~  101 (164)
T d1yzqa1          47 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE  101 (164)
T ss_dssp             CEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             CceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHh
Confidence            4578999999999999999999999999999999999999999999999887653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2e-13  Score=67.94  Aligned_cols=54  Identities=30%  Similarity=0.630  Sum_probs=49.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ....+.+||++|++.++..++.++++++++++|||++++.+|..+..|+.++.+
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~  107 (177)
T d1x3sa1          54 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET  107 (177)
T ss_dssp             EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTT
T ss_pred             cccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcc
Confidence            346789999999999999999999999999999999999999999999998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.41  E-value=1.1e-12  Score=64.38  Aligned_cols=62  Identities=47%  Similarity=0.967  Sum_probs=56.0

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +..++..+++.+.+||++|++.++..+..+++.++++++|+|+++..++.++.+++.+.+.+
T Consensus        37 ~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~   98 (165)
T d1ksha_          37 NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE   98 (165)
T ss_dssp             EEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred             eeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhh
Confidence            45677888999999999999999999999999999999999999999999998888877654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.40  E-value=3.4e-13  Score=66.70  Aligned_cols=54  Identities=17%  Similarity=0.437  Sum_probs=47.1

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|+..+...+..++++++++++|||++++++|+.+..|+.++++
T Consensus        50 ~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~  103 (168)
T d1u8za_          50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR  103 (168)
T ss_dssp             EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHH
Confidence            447889999999999999999999999999999999999999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.2e-14  Score=69.52  Aligned_cols=53  Identities=19%  Similarity=0.598  Sum_probs=49.1

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+.+||++|++.++.+|..++++++++|+|||++++.+|+.+..|+.++..+
T Consensus        64 ~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  116 (186)
T d2f7sa1          64 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN  116 (186)
T ss_dssp             EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC
T ss_pred             EEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhh
Confidence            67899999999999999999999999999999999999999999998876543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.8e-13  Score=66.28  Aligned_cols=53  Identities=23%  Similarity=0.508  Sum_probs=49.3

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..++++++++++|+|++++++|.++..|+.++..
T Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  105 (174)
T d2bmea1          53 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM  105 (174)
T ss_dssp             EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhccccc
Confidence            46789999999999999999999999999999999999999999999888764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-13  Score=67.15  Aligned_cols=55  Identities=15%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      +.+.+.+||++|++.+...+..++++++++++|||++++++|+++..++...+++
T Consensus        51 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~  105 (183)
T d1mh1a_          51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH  105 (183)
T ss_dssp             EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH
T ss_pred             cceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHH
Confidence            3477899999999999999999999999999999999999999998877666543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-12  Score=64.25  Aligned_cols=54  Identities=15%  Similarity=0.350  Sum_probs=49.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||++++++|.++.+|+.++..
T Consensus        49 ~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~  102 (167)
T d1kaoa_          49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIR  102 (167)
T ss_dssp             EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             ceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhh
Confidence            447899999999999999999999999999999999999999999999987754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-12  Score=64.22  Aligned_cols=54  Identities=22%  Similarity=0.551  Sum_probs=49.7

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      .+.+.+||++|++.+...++.++++++++++|+|+++.++|+++..|+..+.+.
T Consensus        54 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~  107 (170)
T d1r2qa_          54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ  107 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhc
Confidence            478899999999999999999999999999999999999999999998887543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.5e-13  Score=65.82  Aligned_cols=50  Identities=10%  Similarity=0.160  Sum_probs=42.6

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ++..+.+.+||++|+..+.     |+++++++|+|||+++++||+++..|..++.
T Consensus        48 ~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~   97 (175)
T d2bmja1          48 DGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLS   97 (175)
T ss_dssp             TTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEeecccccccc-----cccccceeEEEeecccchhhhhhHHHHHHHH
Confidence            3445889999999987653     7889999999999999999999988887763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.2e-13  Score=65.77  Aligned_cols=55  Identities=22%  Similarity=0.440  Sum_probs=50.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..+.+.+||++|++.+...+..++++++++++|||+++++||..+.+|+.++.+.
T Consensus        51 ~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~  105 (175)
T d2f9la1          51 KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH  105 (175)
T ss_dssp             EEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             EEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHh
Confidence            3478899999999999999999999999999999999999999999999887653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=6.6e-13  Score=65.29  Aligned_cols=53  Identities=17%  Similarity=0.513  Sum_probs=49.2

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|+..+...+..++++++++++|||++++++|+++..|+.++.+
T Consensus        50 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~  102 (164)
T d1z2aa1          50 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA  102 (164)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             eeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccc
Confidence            36789999999999999999999999999999999999999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.4e-12  Score=63.39  Aligned_cols=52  Identities=19%  Similarity=0.473  Sum_probs=48.0

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+||++|++.+...+..++++++++++|||++++++|+.++.|+..+.+
T Consensus        53 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  104 (167)
T d1z0ja1          53 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ  104 (167)
T ss_dssp             EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             cceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhh
Confidence            5678999999999999999999999999999999999999999999877653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=3e-12  Score=63.75  Aligned_cols=49  Identities=33%  Similarity=0.647  Sum_probs=45.2

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhH
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI   50 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf   50 (65)
                      +..+++.....+++||++|++.++..|..|+++++++++|+|+++.++|
T Consensus        33 ~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~   81 (195)
T d1svsa1          33 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV   81 (195)
T ss_dssp             EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCB
T ss_pred             EEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchH
Confidence            4567888999999999999999999999999999999999999988765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.3e-12  Score=64.72  Aligned_cols=54  Identities=24%  Similarity=0.529  Sum_probs=50.0

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ...+.+||++|+..+...++.+++.++++++|||++++++|+.+.+|+.++.+.
T Consensus        51 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~  104 (173)
T d2a5ja1          51 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH  104 (173)
T ss_dssp             EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             EEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHh
Confidence            478899999999999999999999999999999999999999999999887653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.5e-12  Score=64.38  Aligned_cols=54  Identities=19%  Similarity=0.430  Sum_probs=45.9

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|...+...++.+++.++++++|||+++++||+.+..|+.++++
T Consensus        51 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~  104 (171)
T d2erya1          51 RAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILR  104 (171)
T ss_dssp             EEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHh
Confidence            347899999999999999999999999999999999999999999999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=1e-11  Score=61.34  Aligned_cols=53  Identities=17%  Similarity=0.387  Sum_probs=39.5

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.+||++|++.+...+..+++.++++++|||++++.+|+.+..|+.++.+
T Consensus        51 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~  103 (175)
T d1ky3a_          51 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV  103 (175)
T ss_dssp             CEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             cccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhh
Confidence            36789999999999999999999999999999999999999999999988764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.24  E-value=7.9e-11  Score=60.36  Aligned_cols=64  Identities=28%  Similarity=0.524  Sum_probs=54.6

Q ss_pred             CcEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh----------hhHHHHHHHHHHHhccc
Q 037770            1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRIVEARDELHRMLNEV   64 (65)
Q Consensus         1 f~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~sf~~~~~~~~~~~~~~   64 (65)
                      ++..+++.+++.+++||++|++.++..|..++.+++++++|+|+++.          .++.+...++..++++.
T Consensus        37 ~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~  110 (221)
T d1azta2          37 IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR  110 (221)
T ss_dssp             CEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCG
T ss_pred             eEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcCh
Confidence            35677888999999999999999999999999999999999999864          34667777788777653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2e-11  Score=60.19  Aligned_cols=51  Identities=20%  Similarity=0.276  Sum_probs=43.6

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHH
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRM   60 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~   60 (65)
                      ..+.+.+||++|+..+. ....++++++++++|||++++++|..+..|+..+
T Consensus        48 ~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~   98 (168)
T d2atva1          48 EVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL   98 (168)
T ss_dssp             EEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             cceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccc
Confidence            34789999999998875 5667999999999999999999999998876543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.9e-11  Score=59.86  Aligned_cols=55  Identities=22%  Similarity=0.531  Sum_probs=47.6

Q ss_pred             CCEEEEEEECCCCcCchh-hHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            9 KNISFTVWDVGGQDKIRP-LWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ....+.+||.+|...... .++.++++++++++|||++++++|+++.+|+.++.++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~  104 (165)
T d1z06a1          49 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH  104 (165)
T ss_dssp             EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             cceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhh
Confidence            346788999999877764 5788999999999999999999999999999988654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.7e-11  Score=59.49  Aligned_cols=54  Identities=13%  Similarity=0.329  Sum_probs=49.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|++.+...++.++++++++++|+|++++.+|+++.+|+..+.+
T Consensus        49 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~  102 (166)
T d1ctqa_          49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKR  102 (166)
T ss_dssp             EEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             eeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHH
Confidence            347889999999999999999999999999999999999999999999887754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.8e-10  Score=57.38  Aligned_cols=63  Identities=25%  Similarity=0.507  Sum_probs=51.6

Q ss_pred             CcEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh----------hHHHHHHHHHHHhcc
Q 037770            1 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RIVEARDELHRMLNE   63 (65)
Q Consensus         1 f~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------sf~~~~~~~~~~~~~   63 (65)
                      ++..++....+.+++||++|++.++..|..++++++++++++|+++.+          ++.+..+.+..++++
T Consensus        35 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~  107 (200)
T d2bcjq2          35 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY  107 (200)
T ss_dssp             CEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHC
T ss_pred             EEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhh
Confidence            356678888899999999999999999999999999999999998764          345555666666543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.14  E-value=6.3e-10  Score=53.59  Aligned_cols=61  Identities=90%  Similarity=1.424  Sum_probs=54.5

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhcc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNE   63 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~~   63 (65)
                      ..+.+...+.+.+||++|...+...+..++..++++++++|++++.++..+..++.+++..
T Consensus        36 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~   96 (160)
T d1r8sa_          36 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE   96 (160)
T ss_dssp             EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC
T ss_pred             EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHh
Confidence            3456677899999999999999999999999999999999999999999999888887653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.3e-10  Score=55.85  Aligned_cols=53  Identities=13%  Similarity=0.436  Sum_probs=48.4

Q ss_pred             CEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770           10 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus        10 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+.+.+||++|.......+..++..++++++++|++++.+|+.+..|+.++.+
T Consensus        54 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~  106 (174)
T d1wmsa_          54 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY  106 (174)
T ss_dssp             EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             eeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHH
Confidence            36788999999999999999999999999999999999999999999877653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.1e-10  Score=56.65  Aligned_cols=54  Identities=15%  Similarity=0.150  Sum_probs=43.5

Q ss_pred             CCEEEEEEECCCCcCc-hhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKI-RPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~-~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      +...+.+||+++.... +..+..++++++++|+|||++++++|+++.+|+.++..
T Consensus        51 ~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~  105 (172)
T d2g3ya1          51 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRR  105 (172)
T ss_dssp             EEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHT
T ss_pred             ceeeeeeeccccccccccccccccccccceeeeeecccccchhhhhhhhhhhhhh
Confidence            4467788997754322 33677889999999999999999999999999888764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=1.2e-10  Score=57.97  Aligned_cols=54  Identities=15%  Similarity=0.385  Sum_probs=49.3

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ..+.+.+||++|+......+..++..++++++|+|.++..+|..+..|+.++.+
T Consensus        49 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~  102 (184)
T d1vg8a_          49 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI  102 (184)
T ss_dssp             CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             ceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHH
Confidence            346888999999999999999999999999999999999999999999887754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1e-09  Score=54.74  Aligned_cols=62  Identities=31%  Similarity=0.568  Sum_probs=46.4

Q ss_pred             cEEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChh----------hHHHHHHHHHHHhcc
Q 037770            2 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD----------RIVEARDELHRMLNE   63 (65)
Q Consensus         2 ~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------sf~~~~~~~~~~~~~   63 (65)
                      ++.+++.+...+.+||++|++.++..|..+++++.+++++++.++..          ++.+...++..++++
T Consensus        35 ~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  106 (200)
T d1zcba2          35 HEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN  106 (200)
T ss_dssp             EEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred             EEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhC
Confidence            56778899999999999999999999999999999999999998753          456677777777654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.58  E-value=6.9e-07  Score=43.43  Aligned_cols=59  Identities=47%  Similarity=0.888  Sum_probs=47.5

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHh
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRML   61 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~   61 (65)
                      ..++...+..+.+||.++.+..+..+..++..++++++++|.++.+++.....+.....
T Consensus        51 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~  109 (177)
T d1zj6a1          51 VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML  109 (177)
T ss_dssp             CEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHH
T ss_pred             EEEEeecceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhh
Confidence            35566788999999999999999999999999999999999999999988776665544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=3.5e-07  Score=45.76  Aligned_cols=53  Identities=26%  Similarity=0.489  Sum_probs=42.4

Q ss_pred             CCEEEEEEECCCCcCch-hhHHhhhhCCcEEEEEEECCChhh-HHHHHHHHHHHh
Q 037770            9 KNISFTVWDVGGQDKIR-PLWRHYFQNTQGLIFVVDSNDRDR-IVEARDELHRML   61 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~-~~~~~~~~~~~~ii~v~d~~~~~s-f~~~~~~~~~~~   61 (65)
                      ....+.+||++|++.++ ..+..++..++++++|+|+++..+ +.+..+++.+++
T Consensus        45 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l   99 (207)
T d2fh5b1          45 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVL   99 (207)
T ss_dssp             TCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHH
T ss_pred             eeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHH
Confidence            35789999999998875 577888999999999999999877 455556665554

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=1.6e-06  Score=41.20  Aligned_cols=59  Identities=42%  Similarity=0.830  Sum_probs=51.2

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .+....+....+||+.|.......+..++..++++++++|.++..++.....++....+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   95 (166)
T d2qtvb1          37 EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN   95 (166)
T ss_dssp             EEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred             EEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhh
Confidence            44555678899999999999999999999999999999999999999888888776654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.11  E-value=3.2e-05  Score=37.25  Aligned_cols=60  Identities=30%  Similarity=0.789  Sum_probs=47.4

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      ...+.........||+.++..+...+..+++..+++++++|+++...+.+....+.....
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~  108 (186)
T d1f6ba_          49 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT  108 (186)
T ss_dssp             CEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred             eeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhc
Confidence            445666778899999999999999999999999999999999999999888776655443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.95  E-value=0.00011  Score=34.80  Aligned_cols=59  Identities=58%  Similarity=1.031  Sum_probs=50.2

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCChhhHHHHHHHHHHHhc
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN   62 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~sf~~~~~~~~~~~~   62 (65)
                      .....+...+.+|+.+|.......+...+...+++++++|+.+..++.....++.....
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (169)
T d1upta_          42 ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE  100 (169)
T ss_dssp             EEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHT
T ss_pred             eeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhh
Confidence            34566789999999999999999999999999999999999998888888776655443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.92  E-value=6.9e-05  Score=36.39  Aligned_cols=44  Identities=14%  Similarity=0.136  Sum_probs=32.5

Q ss_pred             EEECCEEEEEEECCCCcCchhhH--------HhhhhCCcEEEEEEECCChhh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLW--------RHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~--------~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      ....+..+.+||++|.......+        ..++..++++++|+|+++...
T Consensus        48 ~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~   99 (178)
T d1wf3a1          48 LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT   99 (178)
T ss_dssp             EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC
T ss_pred             eeeeeeeeeecccccccccccccchhcccccccccccccceeeeechhhhhc
Confidence            45567889999999986543322        334678999999999987644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=1.1e-05  Score=39.99  Aligned_cols=53  Identities=30%  Similarity=0.495  Sum_probs=38.2

Q ss_pred             ECCEEEEEEECCCCcCchhhHHhhhh----CCcEEEEEEECC-ChhhHHHHHHHHHHH
Q 037770            8 YKNISFTVWDVGGQDKIRPLWRHYFQ----NTQGLIFVVDSN-DRDRIVEARDELHRM   60 (65)
Q Consensus         8 ~~~~~l~~~d~~g~~~~~~~~~~~~~----~~~~ii~v~d~~-~~~sf~~~~~~~~~~   60 (65)
                      ..+..+.+||++|+..++..+..++.    ..+.+++++|.. ...++....+++.++
T Consensus        43 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~  100 (209)
T d1nrjb_          43 YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI  100 (209)
T ss_dssp             GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHH
T ss_pred             eCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHH
Confidence            34566889999999988877766554    347888888877 466677776666544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.49  E-value=0.00023  Score=35.65  Aligned_cols=42  Identities=19%  Similarity=0.158  Sum_probs=36.0

Q ss_pred             EEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            5 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+...+..+.+.|+||+..+..-...-...+|++|+|+|..+
T Consensus        61 ~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~  102 (204)
T d2c78a3          61 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD  102 (204)
T ss_dssp             EEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT
T ss_pred             EEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCC
Confidence            445667889999999999998877778889999999999975

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.43  E-value=0.00047  Score=36.01  Aligned_cols=43  Identities=9%  Similarity=0.152  Sum_probs=38.1

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..+..++..+.+.|+||+..|..-.....+-+|++++|+|..+
T Consensus        60 ~~~~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~  102 (267)
T d2dy1a2          60 APLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA  102 (267)
T ss_dssp             EEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT
T ss_pred             ccccccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccC
Confidence            4567788899999999999999888888999999999999974

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.36  E-value=0.00011  Score=37.29  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=32.7

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ....+.+.|+||+..+..........+|++|+|+|..+
T Consensus        68 ~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~  105 (227)
T d1g7sa4          68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE  105 (227)
T ss_dssp             TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT
T ss_pred             cccccccccccceecccccchhcccccceEEEEEeccc
Confidence            45678999999999988777777888999999999875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.34  E-value=0.00054  Score=35.97  Aligned_cols=44  Identities=23%  Similarity=0.263  Sum_probs=39.0

Q ss_pred             EEEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            3 VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         3 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +..+..++..+.+.|+||+..|..-.....+-+|+.|+|+|..+
T Consensus        63 ~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~  106 (276)
T d2bv3a2          63 VTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQ  106 (276)
T ss_dssp             EEEEEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTT
T ss_pred             eeeeccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccC
Confidence            35667788999999999999999888888999999999999975

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=0.0015  Score=30.69  Aligned_cols=48  Identities=15%  Similarity=0.192  Sum_probs=33.1

Q ss_pred             EEEECCEEEEEEECCCCcCch---------hhHHhhhhCCcEEEEEEECCChhhHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNTQGLIFVVDSNDRDRIVE   52 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~---------~~~~~~~~~~~~ii~v~d~~~~~sf~~   52 (65)
                      .+...+..+.+||++|...-.         ......+..++++++|+|.++......
T Consensus        42 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~   98 (160)
T d1xzpa2          42 EIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEED   98 (160)
T ss_dssp             EEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHH
T ss_pred             EEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhh
Confidence            456678899999999942210         112224678999999999998766443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.21  E-value=0.00035  Score=35.32  Aligned_cols=41  Identities=22%  Similarity=0.222  Sum_probs=36.0

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +...+..+.+.|+||+..|......-..-+|++++|+|..+
T Consensus        76 ~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~  116 (224)
T d1jnya3          76 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK  116 (224)
T ss_dssp             EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred             EecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEeccc
Confidence            44566789999999999999888888889999999999985

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.12  E-value=0.0019  Score=32.74  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=34.5

Q ss_pred             EECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            7 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         7 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ...+..+.+.|+||+..+-.....-...+|++++|+|...
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~  124 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY  124 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEecccc
Confidence            3456789999999999998888888889999999999974

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.0018  Score=33.11  Aligned_cols=43  Identities=14%  Similarity=0.055  Sum_probs=36.6

Q ss_pred             EEEEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            4 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..+...+.++.+.|+||+..|......-...+|++|+|+|...
T Consensus        77 ~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~  119 (239)
T d1f60a3          77 WKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV  119 (239)
T ss_dssp             EEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred             eEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCC
Confidence            3455577899999999999998888788889999999999864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00074  Score=36.42  Aligned_cols=38  Identities=18%  Similarity=0.248  Sum_probs=33.6

Q ss_pred             CCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            9 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +...+.+.|+||+..+..-.....+-+|++++|+|..+
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~e  131 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE  131 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEeccc
Confidence            34678999999999998888888899999999999985

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.86  E-value=0.0011  Score=33.05  Aligned_cols=41  Identities=20%  Similarity=0.122  Sum_probs=34.2

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +...+..+.+.|++|+..|......-...+|++++|+|..+
T Consensus        61 ~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~  101 (196)
T d1d2ea3          61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND  101 (196)
T ss_dssp             EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT
T ss_pred             EEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCC
Confidence            44566788999999999887777777788999999999985

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0053  Score=28.76  Aligned_cols=50  Identities=14%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             EEEECCEEEEEEECCCCcCchh--------hHHhhhhCCcEEEEEEECCChhhHHHHH
Q 037770            5 TVEYKNISFTVWDVGGQDKIRP--------LWRHYFQNTQGLIFVVDSNDRDRIVEAR   54 (65)
Q Consensus         5 ~~~~~~~~l~~~d~~g~~~~~~--------~~~~~~~~~~~ii~v~d~~~~~sf~~~~   54 (65)
                      .+...+..+.++|++|......        ....++..++.+++++|.++..++....
T Consensus        43 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  100 (161)
T d2gj8a1          43 HIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAE  100 (161)
T ss_dssp             EEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHH
T ss_pred             eeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhh
Confidence            4566778899999999655432        1245578899999999999877654444

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.25  E-value=0.0041  Score=30.44  Aligned_cols=37  Identities=16%  Similarity=0.200  Sum_probs=31.5

Q ss_pred             EEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770           11 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus        11 ~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      ..+.+.|++|+..+......-...++++++|+|..+.
T Consensus        78 ~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g  114 (195)
T d1kk1a3          78 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP  114 (195)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred             eeEeeeccchhhhhhHHhhcccccccccccccchhhh
Confidence            4578999999998888777778889999999998763

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.09  E-value=0.0064  Score=31.11  Aligned_cols=41  Identities=12%  Similarity=0.118  Sum_probs=25.2

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      +.....++.+.|+||+..+......-...++++++|+|...
T Consensus        97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~  137 (245)
T d1r5ba3          97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARR  137 (245)
T ss_dssp             EECSSEEEEECCCCC-----------TTSCSEEEEEEECST
T ss_pred             cccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCC
Confidence            34456789999999999998877777888999999999975

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.80  E-value=0.0053  Score=30.32  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=30.4

Q ss_pred             EEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCC
Q 037770           12 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      .+.+.|++|+..|..........++++|+|+|..+
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~  121 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANE  121 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTS
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccc
Confidence            57899999999987777777788999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.78  E-value=0.0089  Score=28.81  Aligned_cols=42  Identities=17%  Similarity=0.161  Sum_probs=35.4

Q ss_pred             EEECCEEEEEEECCCCcCchhhHHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +...+..+.++|++|+..+..........++++++++|.++.
T Consensus        54 ~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g   95 (179)
T d1wb1a4          54 FKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG   95 (179)
T ss_dssp             EEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC
T ss_pred             cccCCccccccccccccccccchhhhhhhccccccccccccc
Confidence            344667889999999988888778888899999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.45  E-value=0.016  Score=27.62  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=23.8

Q ss_pred             EEEEECCCCcCc---------------hhhHHhhhhCCcEEEEEEECCChh
Q 037770           13 FTVWDVGGQDKI---------------RPLWRHYFQNTQGLIFVVDSNDRD   48 (65)
Q Consensus        13 l~~~d~~g~~~~---------------~~~~~~~~~~~~~ii~v~d~~~~~   48 (65)
                      +.++|++|....               ........+.++++++|+|.+...
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~   95 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAP   95 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHH
T ss_pred             ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccc
Confidence            468999995322               112234456789999999987543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.36  E-value=0.047  Score=25.94  Aligned_cols=39  Identities=23%  Similarity=0.291  Sum_probs=26.7

Q ss_pred             CCEEEEEEECCCCcCc-------hhhHHhhhhCCcEEEEEEECCCh
Q 037770            9 KNISFTVWDVGGQDKI-------RPLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         9 ~~~~l~~~d~~g~~~~-------~~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      .+..+.+||++|....       ..........++.+++++|....
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~   92 (180)
T d1udxa2          47 EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE   92 (180)
T ss_dssp             SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSC
T ss_pred             CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            3467899999995332       12233456788999999998643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.44  E-value=0.51  Score=21.91  Aligned_cols=46  Identities=22%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             EEEEECCEEEEEEECCCCcCch---------hhHHhhhhCCcEEEEEEECCChhh
Q 037770            4 ETVEYKNISFTVWDVGGQDKIR---------PLWRHYFQNTQGLIFVVDSNDRDR   49 (65)
Q Consensus         4 ~~~~~~~~~l~~~d~~g~~~~~---------~~~~~~~~~~~~ii~v~d~~~~~s   49 (65)
                      ..++.....+..||++|.....         .....+...++.++++.+.+....
T Consensus        41 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~   95 (171)
T d1mkya1          41 DTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGIT   95 (171)
T ss_dssp             EEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCC
T ss_pred             ccccccccccccccccceeeeeccccccccccccccccccCcEEEEeeccccccc
Confidence            3466778899999999843322         223445678899999999875433

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=87.54  E-value=0.71  Score=21.60  Aligned_cols=42  Identities=12%  Similarity=0.144  Sum_probs=27.1

Q ss_pred             EEECCEEEEEEECCCCcCch------------hhHHhhhhCCcEEEEEEECCCh
Q 037770            6 VEYKNISFTVWDVGGQDKIR------------PLWRHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~------------~~~~~~~~~~~~ii~v~d~~~~   47 (65)
                      +...+..+.++|++|.....            .......+.++.+++|+|.+..
T Consensus        51 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~  104 (186)
T d1mkya2          51 VFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQG  104 (186)
T ss_dssp             EEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTC
T ss_pred             eccCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeeccccc
Confidence            44456677788888764432            3334456788999999999754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.65  E-value=1.3  Score=22.33  Aligned_cols=41  Identities=10%  Similarity=0.066  Sum_probs=25.5

Q ss_pred             EEECCEEEEEEECCCCcCchh-------hHH--hhhhCCcEEEEEEECCC
Q 037770            6 VEYKNISFTVWDVGGQDKIRP-------LWR--HYFQNTQGLIFVVDSND   46 (65)
Q Consensus         6 ~~~~~~~l~~~d~~g~~~~~~-------~~~--~~~~~~~~ii~v~d~~~   46 (65)
                      ....+..+.++||+|-.....       ...  ......+++++|.+++.
T Consensus        75 ~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~  124 (257)
T d1h65a_          75 RSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA  124 (257)
T ss_dssp             EEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC
T ss_pred             EEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCC
Confidence            455678899999999543211       111  12235678889988764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=84.34  E-value=0.39  Score=22.61  Aligned_cols=37  Identities=22%  Similarity=0.167  Sum_probs=22.4

Q ss_pred             EEEEEEECCCCcC----chhhH---HhhhhCCcEEEEEEECCCh
Q 037770           11 ISFTVWDVGGQDK----IRPLW---RHYFQNTQGLIFVVDSNDR   47 (65)
Q Consensus        11 ~~l~~~d~~g~~~----~~~~~---~~~~~~~~~ii~v~d~~~~   47 (65)
                      -.+.+||++|...    .....   ......++.++++.+....
T Consensus        49 ~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~   92 (185)
T d1lnza2          49 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGL   92 (185)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCS
T ss_pred             cEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeeccc
Confidence            4688999999521    11111   2234567888888876644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.26  E-value=1.8  Score=23.31  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=20.3

Q ss_pred             EEEEEECCCCcCchhh-----HHhhhhCCcEEEEEEEC
Q 037770           12 SFTVWDVGGQDKIRPL-----WRHYFQNTQGLIFVVDS   44 (65)
Q Consensus        12 ~l~~~d~~g~~~~~~~-----~~~~~~~~~~ii~v~d~   44 (65)
                      .+.+||++|-......     ...-...++.++++.|.
T Consensus       108 ~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~  145 (400)
T d1tq4a_         108 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT  145 (400)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESS
T ss_pred             eEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCC
Confidence            4779999996543322     22334567777777654

>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha1-beta1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.69  E-value=1.2  Score=21.05  Aligned_cols=27  Identities=15%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             EEEEEECCC-hhhHHHHHHHHHHHhccc
Q 037770           38 LIFVVDSND-RDRIVEARDELHRMLNEV   64 (65)
Q Consensus        38 ii~v~d~~~-~~sf~~~~~~~~~~~~~~   64 (65)
                      +++++|.|. ...|+..+++++.+++.+
T Consensus         4 ivfvlD~S~S~~~~~~~k~f~~~~i~~~   31 (192)
T d1pt6a_           4 IVIVLDGSNSIYPWDSVTAFLNDLLKRM   31 (192)
T ss_dssp             EEEEEECCTTCCCHHHHHHHHHHHHTTS
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence            578888874 356888888888887654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.22  E-value=1.3  Score=22.81  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             EEEEEEECCCCcCc-------hhhHHhhhhCCcEEEEEEECCC
Q 037770           11 ISFTVWDVGGQDKI-------RPLWRHYFQNTQGLIFVVDSND   46 (65)
Q Consensus        11 ~~l~~~d~~g~~~~-------~~~~~~~~~~~~~ii~v~d~~~   46 (65)
                      ..+.++|++|--..       ....-...+.+++++.|+|..+
T Consensus        71 ~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             EEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             ccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            56899999995331       1111234567899999999863