Citrus Sinensis ID: 037784

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSNFNFTST
ccccccccccEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccEEEccccccccccccccccEEEEcccccEEccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEccccEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEEEEEccccEEEEEcccccccccccccccccc
ccHHcccccEEEEEEccccccccEEEEccccccccccccccccccEccccEcccccccccccccccEEEEEEEEEEEccEEEcccHHHcccccccccEEEEEcccccEEccHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccEEEEEEEcccEEEEEccccEEEEccccEEEEEEEEcccccccEEEEEcccccccEEEEEcccccEEEccccccccccccccccccc
LAAAFSLNRKFAiclspsarsngviiigdgpyvllpnvdvsksltytpllinqvnteggflgtpsneyfigvksikvggiaiplnttllsidsegiggtkfstavpYTVLETSIYKALLQAFVNAMptkvtrvapvvpfgacfnsrdigssrlgpsvpqidlVLQNSKVLWSIIGANSIVRVSNdvsclgfvdggvtpktsivigghqldnnlvqfdiassrlgfsnSLLLQRTmcsnfnftst
LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNslllqrtmcsnfnftst
LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSNFNFTST
****FSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSNFN****
LAAA*SLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPT*****APVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSNFNF***
LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSNFNFTST
****FSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSNFN****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSNFNFTST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query244 2.2.26 [Sep-21-2011]
P13917427 Basic 7S globulin OS=Glyc no no 0.913 0.522 0.380 2e-35
Q8RVH5433 Basic 7S globulin 2 OS=Gl no no 0.913 0.515 0.345 2e-31
Q9LZL3453 Aspartic proteinase PCS1 no no 0.840 0.452 0.244 3e-08
Q3EBM5447 Probable aspartic proteas no no 0.811 0.442 0.268 9e-07
>sp|P13917|7SB1_SOYBN Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2 Back     alignment and function desciption
 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/247 (38%), Positives = 130/247 (52%), Gaps = 24/247 (9%)

Query: 1   LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVL--LPNVDVSKSLTYTPLLINQVNTEG 58
           LA+ F L R+F  CLS    S G II GD P  +    N D+   L +TPL I       
Sbjct: 196 LASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTI------- 248

Query: 59  GFLGTPSNEYFIGVKSIKVGGIAI-PLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKA 117
               T   EY + V SI++   ++ PLN    +I     GGT  ST+ P+ VL+ S+Y+A
Sbjct: 249 ----TLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQA 304

Query: 118 LLQAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSK-VLWSIIGA 176
             Q F   +P K  +V  V PFG CFNS  I +       P +DLV+      +W I G 
Sbjct: 305 FTQVFAQQLP-KQAQVKSVAPFGLCFNSNKINA------YPSVDLVMDKPNGPVWRISGE 357

Query: 177 NSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQR-TM 235
           + +V+    V+CLG ++GG+ P+  I +G  QL+ NLV FD+A SR+GFS S L      
Sbjct: 358 DLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVK 417

Query: 236 CSN-FNF 241
           C++ FNF
Sbjct: 418 CADLFNF 424
Seed storage protein. Has a protein kinase activity. Binds leginsulin.
Glycine max (taxid: 3847)
>sp|Q8RVH5|7SBG2_SOYBN Basic 7S globulin 2 OS=Glycine max PE=1 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
225432542 435 PREDICTED: basic 7S globulin-like [Vitis 0.991 0.556 0.676 2e-89
255552241 434 basic 7S globulin 2 precursor small subu 0.987 0.555 0.647 3e-88
225436984 436 PREDICTED: basic 7S globulin [Vitis vini 0.995 0.557 0.644 9e-86
147857949 436 hypothetical protein VITISV_038701 [Viti 0.995 0.557 0.640 3e-85
224090425 416 predicted protein [Populus trichocarpa] 0.991 0.581 0.630 4e-82
222822564 437 xyloglucan-specific endoglucanase inhibi 0.987 0.551 0.620 6e-81
62362434 437 nectarin IV [Nicotiana langsdorffii x Ni 0.991 0.553 0.608 3e-80
147801500 415 hypothetical protein VITISV_011733 [Viti 0.995 0.585 0.616 6e-80
343161843 440 extracellular dermal glycoprotein [Nicot 0.991 0.55 0.604 3e-79
295646769 437 xyloglucan specific endoglucanase inhibi 0.987 0.551 0.608 5e-79
>gi|225432542|ref|XP_002277699.1| PREDICTED: basic 7S globulin-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 165/244 (67%), Positives = 199/244 (81%), Gaps = 2/244 (0%)

Query: 1   LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGG- 59
            ++AFS NRKF+ICLS S +S GV+  GDGPYVLLP VD S+SLTYTPL+ N V+T    
Sbjct: 191 FSSAFSFNRKFSICLSSSTKSTGVVFFGDGPYVLLPKVDASQSLTYTPLITNPVSTASAY 250

Query: 60  FLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALL 119
           F G  S EYFIGVKSIK+ G A+PLN TLLSIDS+G GGTK ST  PYTVLETSIYKA+ 
Sbjct: 251 FQGEASVEYFIGVKSIKINGKAVPLNATLLSIDSQGYGGTKISTVHPYTVLETSIYKAVT 310

Query: 120 QAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSI 179
           QAF+  + T +TRVA V PFGACF+S+DIGS+R+GP+VP IDLVLQ   V W + GANS+
Sbjct: 311 QAFLKELST-ITRVASVSPFGACFSSKDIGSTRVGPAVPPIDLVLQRQSVYWRVFGANSM 369

Query: 180 VRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSNF 239
           V+VS++V CLGFVDGGV P+TSIVIGG QL++NL+QFD+A+SRLGFS+SLL ++T CSNF
Sbjct: 370 VQVSDNVLCLGFVDGGVNPRTSIVIGGRQLEDNLLQFDLATSRLGFSSSLLSRQTTCSNF 429

Query: 240 NFTS 243
           NFTS
Sbjct: 430 NFTS 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552241|ref|XP_002517165.1| basic 7S globulin 2 precursor small subunit, putative [Ricinus communis] gi|223543800|gb|EEF45328.1| basic 7S globulin 2 precursor small subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225436984|ref|XP_002272235.1| PREDICTED: basic 7S globulin [Vitis vinifera] Back     alignment and taxonomy information
>gi|147857949|emb|CAN80378.1| hypothetical protein VITISV_038701 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224090425|ref|XP_002308984.1| predicted protein [Populus trichocarpa] gi|222854960|gb|EEE92507.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|222822564|gb|ACM68431.1| xyloglucan-specific endoglucanase inhibitor protein [Capsicum annuum] Back     alignment and taxonomy information
>gi|62362434|gb|AAX81588.1| nectarin IV [Nicotiana langsdorffii x Nicotiana sanderae] Back     alignment and taxonomy information
>gi|147801500|emb|CAN61502.1| hypothetical protein VITISV_011733 [Vitis vinifera] Back     alignment and taxonomy information
>gi|343161843|dbj|BAK57511.1| extracellular dermal glycoprotein [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|295646769|gb|ADG23123.1| xyloglucan specific endoglucanase inhibitor [Solanum melongena] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query244
TAIR|locus:2014475433 AT1G03220 [Arabidopsis thalian 0.979 0.551 0.556 3.6e-66
TAIR|locus:2014465434 AT1G03230 [Arabidopsis thalian 0.979 0.550 0.560 6.7e-65
TAIR|locus:2182182405 AT5G19110 [Arabidopsis thalian 0.909 0.548 0.407 3e-37
TAIR|locus:2179614391 AT5G19100 [Arabidopsis thalian 0.540 0.337 0.531 2.9e-32
TAIR|locus:2166061406 AT5G48430 [Arabidopsis thalian 0.680 0.408 0.390 3.9e-28
TAIR|locus:2182187386 AT5G19120 [Arabidopsis thalian 0.549 0.347 0.420 3.6e-22
TAIR|locus:2045615527 AT2G42980 [Arabidopsis thalian 0.745 0.345 0.28 1.1e-11
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.622 0.314 0.277 2.3e-09
TAIR|locus:2043245442 AT2G39710 [Arabidopsis thalian 0.848 0.468 0.264 2.6e-09
TAIR|locus:2185173453 PCS1 "PROMOTION OF CELL SURVIV 0.840 0.452 0.257 6.6e-09
TAIR|locus:2014475 AT1G03220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 137/246 (55%), Positives = 181/246 (73%)

Query:     2 AAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFL 61
             AAAFS +RKFA+CL+      GV   G+GPYV LP + +S SL  TPLLIN V+T   F 
Sbjct:   191 AAAFSFHRKFAVCLTSG---KGVAFFGNGPYVFLPGIQIS-SLQTTPLLINPVSTASAFS 246

Query:    62 -GTPSNEYFIGVKSIKVGGIAIPLNTTLLSID-SEGIGGTKFSTAVPYTVLETSIYKALL 119
              G  S+EYFIGV +I++    +P+N TLL I+ S GIGGTK S+  PYTVLE+SIY A  
Sbjct:   247 QGEKSSEYFIGVTAIQIVEKTVPINPTLLKINASTGIGGTKISSVNPYTVLESSIYNAFT 306

Query:   120 QAFVN-AMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANS 178
               FV  A    + RVA V PFGACF+++++G +RLG +VP+I+LVL +  V+W I GANS
Sbjct:   307 SEFVKQAAARSIKRVASVKPFGACFSTKNVGVTRLGYAVPEIELVLHSKDVVWRIFGANS 366

Query:   179 IVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSN 238
             +V VS+DV CLGFVDGGV  +TS+VIGG QL++NL++FD+AS++ GFS++LL ++T C+N
Sbjct:   367 MVSVSDDVICLGFVDGGVNARTSVVIGGFQLEDNLIEFDLASNKFGFSSTLLGRQTNCAN 426

Query:   239 FNFTST 244
             FNFTST
Sbjct:   427 FNFTST 432
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2014465 AT1G03230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182182 AT5G19110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179614 AT5G19100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166061 AT5G48430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182187 AT5G19120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045615 AT2G42980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043245 AT2G39710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185173 PCS1 "PROMOTION OF CELL SURVIVAL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 5e-94
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 1e-15
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 6e-14
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 6e-06
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information 
 Score =  280 bits (717), Expect = 5e-94
 Identities = 117/230 (50%), Positives = 147/230 (63%), Gaps = 10/230 (4%)

Query: 1   LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLL-PNVDVSKSLTYTPLLINQVNTEGG 59
           LA+AF + RKFA+CL  S    GV I G GPY L  P +D+SKSL+YTPLL N       
Sbjct: 142 LASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTN------- 194

Query: 60  FLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALL 119
                S EY+IGV SI V G A+PLN TL + D  G GG K ST VPYTVL + IY+A  
Sbjct: 195 --PRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFT 252

Query: 120 QAFVNAMPTKVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGANSI 179
           QAF  A        A  V    C+ +  +G++RLG +VP IDLVL    V W+I GANS+
Sbjct: 253 QAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSM 312

Query: 180 VRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSL 229
           V+V   V+CL FVDGG  P+ ++VIGGHQ+++NL+ FD+  SRLGFS+SL
Sbjct: 313 VQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSSL 362

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability of tight binding and inhibition with subnanomolar affinity and indicates the importance of the C-terminal end for the differences in xylanase specificity among different TAXI-type inhibitors. This family also contains pepsin-like aspartic proteinases homologous to TAXI-I. Unlike TAXI-I, they have active site aspartates and are functionally active. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 362
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 244
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 99.98
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 99.98
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 99.98
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 99.97
cd05487326 renin_like Renin stimulates production of angioten 99.97
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 99.97
cd05477318 gastricsin Gastricsins, asparate proteases produce 99.97
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 99.97
cd05475273 nucellin_like Nucellins, plant aspartic proteases 99.97
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 99.97
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 99.97
PTZ00165482 aspartyl protease; Provisional 99.97
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 99.96
PTZ00147453 plasmepsin-1; Provisional 99.96
PTZ00013450 plasmepsin 4 (PM4); Provisional 99.96
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 99.93
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 99.93
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 99.9
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.99
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 93.59
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 91.61
PF1365090 Asp_protease_2: Aspartyl protease 91.55
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 89.44
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 87.95
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 87.57
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 87.22
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 84.76
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information 
Probab=100.00  E-value=7.1e-41  Score=298.44  Aligned_cols=218  Identities=54%  Similarity=0.918  Sum_probs=167.5

Q ss_pred             CccCCCCCceEEecCCCCCCceEEEEcCCCCCCCCC-CCCCCCeeeeeceecCCCCCCCcCCCCCCCeEEEEEEEEEcCE
Q 037784            2 AAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPN-VDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGI   80 (244)
Q Consensus         2 a~~~~~~~~FS~cL~~~~~~~G~l~fG~~d~~~~p~-~~~~~~~~~tPl~~~~~~~~~~~~~~~~~~y~V~l~~I~v~~~   80 (244)
                      +.+++..++|||||++..+.+|+|+||+.+....++ ...++.+.||||+.++.         ...+|+|+|++|+||++
T Consensus       143 ~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~---------~~~~Y~v~l~~IsVg~~  213 (362)
T cd05489         143 ASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPR---------KSGEYYIGVTSIAVNGH  213 (362)
T ss_pred             hhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCC---------CCCceEEEEEEEEECCE
Confidence            444556789999998764468999999998521100 01247899999998642         24799999999999999


Q ss_pred             EeccCCcccccccCCCCcEEEccCcceEEeChHHHHHHHHHHHHhCCCCccccCCC-CCCCcccccCCCCCCCCCCCcCe
Q 037784           81 AIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPTKVTRVAPV-VPFGACFNSRDIGSSRLGPSVPQ  159 (244)
Q Consensus        81 ~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~-~~~~~Cy~~~~~~~~~~~~~~P~  159 (244)
                      ++.++++.+.....+.+++||||||++|+||+++|++|++++.+++.. .+..... ...+.||+............+|+
T Consensus       214 ~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~-~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~  292 (362)
T cd05489         214 AVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATAR-IPRVPAAAVFPELCYPASALGNTRLGYAVPA  292 (362)
T ss_pred             ECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcc-cCcCCCCCCCcCccccCCCcCCcccccccce
Confidence            998877776655556789999999999999999999999999988762 2221111 12369998643211111258999


Q ss_pred             EEEEEeccceEEEEccCCeEEEeCCCeEEEEEEeCCCCCCceeEEeccceeeeEEEEeCCCCeEEEeecc
Q 037784          160 IDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSL  229 (244)
Q Consensus       160 i~~~f~g~g~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~~l~~~~vvfD~~~~riGFa~~~  229 (244)
                      |+|+|+|+|++|+|+|++|+++..++.+|++|...+......||||++|||+++|+||++++|||||+++
T Consensus       293 it~~f~g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~~  362 (362)
T cd05489         293 IDLVLDGGGVNWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSSL  362 (362)
T ss_pred             EEEEEeCCCeEEEEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccCC
Confidence            9999985459999999999999776789999987653223579999999999999999999999999753

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 3e-79
3vla_A413 Crystal Structure Of Edgp Length = 413 3e-79
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 1e-36
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 3e-26
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 1e-24
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 1e-21
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  291 bits (744), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 152/246 (61%), Positives = 188/246 (76%), Gaps = 3/246 (1%)
Query: 1   LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVS-KSLTYTPLLINQVNTEG- 58
            A+AFS  RKFA+CLS S  SN VII G+ PY  LPN+ VS K+LTYTPLL N V+T   
Sbjct: 168 FASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSAT 227
Query: 59  GFLGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKAL 118
              G PS EYFIGVKSIK+    + LNT+LLSI S G+GGTK ST  PYTVLETSIYKA+
Sbjct: 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAV 287
Query: 119 LQAFVNAMPTK-VTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGAN 177
            +AF+     + +TRVA V PFGACF++ +I S+RLGPSVP IDLVLQ+  V+W+I G+N
Sbjct: 288 TEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSN 347
Query: 178 SIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCS 237
           S+V ++++V CLG VDGG   +TSIVIGGHQL++NLVQFD+A+SR+GFS +LL  RT C+
Sbjct: 348 SMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCA 407
Query: 238 NFNFTS 243
           NFNFTS
Sbjct: 408 NFNFTS 413
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query244
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 3e-59
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-43
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 3e-41
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
 Score =  192 bits (487), Expect = 3e-59
 Identities = 151/246 (61%), Positives = 186/246 (75%), Gaps = 3/246 (1%)

Query: 1   LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDV-SKSLTYTPLLINQVNTEGG 59
            A+AFS  RKFA+CLS S  SN VII G+ PY  LPN+ V  K+LTYTPLL N V+T   
Sbjct: 168 FASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSAT 227

Query: 60  FL-GTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKAL 118
              G PS EYFIGVKSIK+    + LNT+LLSI S G+GGTK ST  PYTVLETSIYKA+
Sbjct: 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAV 287

Query: 119 LQAFVNAMPT-KVTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSIIGAN 177
            +AF+       +TRVA V PFGACF++ +I S+RLGPSVP IDLVLQ+  V+W+I G+N
Sbjct: 288 TEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSN 347

Query: 178 SIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCS 237
           S+V ++++V CLG VDGG   +TSIVIGGHQL++NLVQFD+A+SR+GFS +LL  RT C+
Sbjct: 348 SMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCA 407

Query: 238 NFNFTS 243
           NFNFTS
Sbjct: 408 NFNFTS 413
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 99.98
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 99.98
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 99.97
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 99.97
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 99.97
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 99.97
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 99.97
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 99.97
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 99.97
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 99.97
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 99.97
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 99.97
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 99.97
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 99.97
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.7
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 99.68
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 86.89
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=1.7e-47  Score=345.65  Aligned_cols=242  Identities=62%  Similarity=1.009  Sum_probs=194.3

Q ss_pred             CccCCCCCceEEecCCCCCCceEEEEcCCCCCCCCCCCCCCC-eeeeeceecCCCCCC-CcCCCCCCCeEEEEEEEEEcC
Q 037784            2 AAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKS-LTYTPLLINQVNTEG-GFLGTPSNEYFIGVKSIKVGG   79 (244)
Q Consensus         2 a~~~~~~~~FS~cL~~~~~~~G~l~fG~~d~~~~p~~~~~~~-~~~tPl~~~~~~~~~-~~~~~~~~~y~V~l~~I~v~~   79 (244)
                      ++++.+.++|||||++..+.+|+|+||+.|....|+.+++++ +.||||+.++..+++ +++++...+|+|+|++|+||+
T Consensus       169 ~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg  248 (413)
T 3vla_A          169 ASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINS  248 (413)
T ss_dssp             HHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETT
T ss_pred             hhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCceEEEEEEEEEECC
Confidence            456777899999999854568999999998643343357788 999999987532111 233333579999999999999


Q ss_pred             EEeccCCcccccccCCCCcEEEccCcceEEeChHHHHHHHHHHHHhCCC-CccccCCCCCCCcccccCCCCCCCCCCCcC
Q 037784           80 IAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPT-KVTRVAPVVPFGACFNSRDIGSSRLGPSVP  158 (244)
Q Consensus        80 ~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~-~~~~~~~~~~~~~Cy~~~~~~~~~~~~~~P  158 (244)
                      +.+.++++.|..+++|.+++||||||++|+||+++|++|+++|.+++.. ++++++....++.||+.++...++++..+|
T Consensus       249 ~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP  328 (413)
T 3vla_A          249 KIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVP  328 (413)
T ss_dssp             EEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEEECTTCCEETTEECCC
T ss_pred             EEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCcceeccCCccccccccCCC
Confidence            9999998888877777789999999999999999999999999987631 244443344578999876532111224799


Q ss_pred             eEEEEEeccceEEEEccCCeEEEeCCCeEEEEEEeCCCCCCceeEEeccceeeeEEEEeCCCCeEEEeecccccccccCC
Q 037784          159 QIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSLLLQRTMCSN  238 (244)
Q Consensus       159 ~i~~~f~g~g~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~ILG~~~l~~~~vvfD~~~~riGFa~~~~~~~~~C~~  238 (244)
                      +|+|+|+|+++.|+|++++|+++..++..|++|+......+..||||++||+++++|||++++|||||++++.+++.|++
T Consensus       329 ~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~~~~~~~c~~  408 (413)
T 3vla_A          329 SIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCAN  408 (413)
T ss_dssp             CEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETTTTEEEEEEEGGGGTCCGGG
T ss_pred             cEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECCCCEEEEEEecccCcccccC
Confidence            99999997458999999999998766789999886543223589999999999999999999999999999999999999


Q ss_pred             CcCCC
Q 037784          239 FNFTS  243 (244)
Q Consensus       239 ~~~~~  243 (244)
                      |+|++
T Consensus       409 ~~~~~  413 (413)
T 3vla_A          409 FNFTS  413 (413)
T ss_dssp             SBCCC
T ss_pred             cCCCC
Confidence            99975
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 244
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 4e-24
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 1e-05
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 0.003
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 97.0 bits (240), Expect = 4e-24
 Identities = 66/251 (26%), Positives = 114/251 (45%), Gaps = 35/251 (13%)

Query: 1   LAAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGF 60
           +A+A  +  +F +CL        +   G      +P    ++S+ YTPL+          
Sbjct: 154 VASAQKVANRFLLCLPTGGPGVAIFGGGP-----VPWPQFTQSMPYTPLVTKG------- 201

Query: 61  LGTPSNEYFIGVKSIKVGGIAIPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQ 120
               S  ++I  +SI VG   +P+        +   GG   ST +PY +L   +Y+ L+ 
Sbjct: 202 ---GSPAHYISARSIVVGDTRVPVPEG-----ALATGGVMLSTRLPYVLLRPDVYRPLMD 253

Query: 121 AFVNAMPTK-------VTRVAPVVPFGACFNSRDIGSSRLGPSVPQIDLVLQNSKVLWSI 173
           AF  A+  +          V  V PFG C++++ +G++  G +VP + L L      W++
Sbjct: 254 AFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSD-WTM 312

Query: 174 IGANSIVRVSNDVSCLGFV-----DGGVTPKTSIVIGGHQLDNNLVQFDIASSRLGFSNS 228
            G NS+V V    +C+ FV       G     ++++GG Q+++ ++ FD+   RLGFS  
Sbjct: 313 TGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR- 371

Query: 229 LLLQRTMCSNF 239
            L   T C   
Sbjct: 372 -LPHFTGCGGL 381
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query244
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 99.97
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 99.97
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 99.97
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 99.97
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 99.97
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 99.97
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 99.97
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.96
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 99.96
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 99.96
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 99.96
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 99.96
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 99.96
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 99.95
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 99.95
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 99.95
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 99.95
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 99.94
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.94
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 99.94
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 99.93
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1bxoa_ 323 Acid protease {Fungus (Penicillium janthinellum), 87.15
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.97  E-value=2.2e-32  Score=241.01  Aligned_cols=214  Identities=30%  Similarity=0.620  Sum_probs=163.2

Q ss_pred             CccCCCCCceEEecCCCCCCceEEEEcCCCCCCCCCCCCCCCeeeeeceecCCCCCCCcCCCCCCCeEEEEEEEEEcCEE
Q 037784            2 AAAFSLNRKFAICLSPSARSNGVIIIGDGPYVLLPNVDVSKSLTYTPLLINQVNTEGGFLGTPSNEYFIGVKSIKVGGIA   81 (244)
Q Consensus         2 a~~~~~~~~FS~cL~~~~~~~G~l~fG~~d~~~~p~~~~~~~~~~tPl~~~~~~~~~~~~~~~~~~y~V~l~~I~v~~~~   81 (244)
                      ++++.+.++||+||.+.....+.+.+|+.+.     .++++++.|+|++.+..          ..+|.|.+++|.++++.
T Consensus       155 ~~~~~~~~~fsl~l~~~~~~~~~~~~g~~~~-----~~~~g~~~~~pi~~~~~----------~~~~~v~l~~i~v~~~~  219 (381)
T d1t6ex_         155 ASAQKVANRFLLCLPTGGPGVAIFGGGPVPW-----PQFTQSMPYTPLVTKGG----------SPAHYISARSIVVGDTR  219 (381)
T ss_dssp             HHHHTCCSEEEEECCSSSCEEEEESCCSCSC-----HHHHTTCCEEECBCCTT----------CCSCEECEEEEEETTEE
T ss_pred             hhhcCcceEEEeecCCCcccceEeecccccc-----cccCCceEEEeeeccCC----------CceeEEEEEEEeeCCee
Confidence            4567788999999987644556677777775     47789999999987642          57899999999999999


Q ss_pred             eccCCcccccccCCCCcEEEccCcceEEeChHHHHHHHHHHHHhCCC----Cc---cccCCCCCCCcccccCCCCCCCCC
Q 037784           82 IPLNTTLLSIDSEGIGGTKFSTAVPYTVLETSIYKALLQAFVNAMPT----KV---TRVAPVVPFGACFNSRDIGSSRLG  154 (244)
Q Consensus        82 l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~----~~---~~~~~~~~~~~Cy~~~~~~~~~~~  154 (244)
                      +..+....     ....+|+||||++++||+++|+++.+++.+.+..    ..   ........+..||+.+........
T Consensus       220 ~~~~~~~~-----~~~~~i~DTGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (381)
T d1t6ex_         220 VPVPEGAL-----ATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGG  294 (381)
T ss_dssp             CCCCTTCS-----CTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTE
T ss_pred             eccCcccc-----cCcceEEecCCceEECCHHHHHHHHHHHHHHhcccccccccccccccccCCcceeeccccccccccc
Confidence            87654332     2457999999999999999999999999876431    01   111223456789987653221112


Q ss_pred             CCcCeEEEEEeccceEEEEccCCeEEEeCCCeEEEEEEeCCC-----CCCceeEEeccceeeeEEEEeCCCCeEEEeecc
Q 037784          155 PSVPQIDLVLQNSKVLWSIIGANSIVRVSNDVSCLGFVDGGV-----TPKTSIVIGGHQLDNNLVQFDIASSRLGFSNSL  229 (244)
Q Consensus       155 ~~~P~i~~~f~g~g~~~~l~~~~y~~~~~~~~~Cl~~~~~~~-----~~~~~~ILG~~~l~~~~vvfD~~~~riGFa~~~  229 (244)
                      ..+|.|+|+|++ ++.++++|++|++...++..|+++.....     .....||||+.|||++|+|||++|+|||||+++
T Consensus       295 ~~~P~i~~~f~~-~~~~~i~~~~y~~~~~~~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~  373 (381)
T d1t6ex_         295 YAVPNVQLGLDG-GSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP  373 (381)
T ss_dssp             ECCCCEEEEETT-SCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred             cccccEEEEEcC-CcEEEEChhHeEEEeCCCcEEEEEEecccccCCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEECC
Confidence            478999999987 79999999999998877889998875321     123469999999999999999999999999865


Q ss_pred             cccccccCC
Q 037784          230 LLQRTMCSN  238 (244)
Q Consensus       230 ~~~~~~C~~  238 (244)
                      +-  ++|+.
T Consensus       374 ~~--~~~~~  380 (381)
T d1t6ex_         374 HF--TGCGG  380 (381)
T ss_dssp             TT--CCSCC
T ss_pred             CC--CCCcC
Confidence            54  77764
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure