Citrus Sinensis ID: 037841
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LGN0 | 952 | Glutamate receptor 2.7 OS | yes | no | 0.891 | 0.525 | 0.541 | 1e-159 | |
| Q9C5V5 | 947 | Glutamate receptor 2.8 OS | no | no | 0.877 | 0.519 | 0.555 | 1e-152 | |
| O81078 | 940 | Glutamate receptor 2.9 OS | no | no | 0.871 | 0.520 | 0.548 | 1e-149 | |
| O04660 | 901 | Glutamate receptor 2.1 OS | no | no | 0.787 | 0.490 | 0.536 | 1e-138 | |
| Q9SHV1 | 920 | Glutamate receptor 2.2 OS | no | no | 0.748 | 0.456 | 0.563 | 1e-138 | |
| Q9LFN5 | 918 | Glutamate receptor 2.5 OS | no | no | 0.798 | 0.488 | 0.517 | 1e-138 | |
| Q9SHV2 | 895 | Glutamate receptor 2.3 OS | no | no | 0.798 | 0.500 | 0.526 | 1e-136 | |
| Q9LFN8 | 967 | Glutamate receptor 2.6 OS | no | no | 0.784 | 0.455 | 0.502 | 1e-133 | |
| O81776 | 896 | Glutamate receptor 2.4 OS | no | no | 0.777 | 0.486 | 0.531 | 1e-130 | |
| Q9C8E7 | 933 | Glutamate receptor 3.3 OS | no | no | 0.873 | 0.525 | 0.406 | 1e-105 |
| >sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3 | Back alignment and function desciption |
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Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 281/519 (54%), Positives = 376/519 (72%), Gaps = 19/519 (3%)
Query: 1 RGIGFWTPEKGLTQKLSSNSTT--KSKLKPIIWPGDSTSDPKGWEVPTNEKKLRIGVPVK 58
R IG W P G+ S N+T+ +L P+IWPG S PKGW++PTN K LR+G+PVK
Sbjct: 410 RIIGLWRPSNGIVNAKSKNTTSVLGERLGPVIWPGKSKDVPKGWQIPTNGKMLRVGIPVK 469
Query: 59 KGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYND 118
KGF FV+ IDP + T TG+CI++F+AV+++LPY+V ++ + PD +Y++
Sbjct: 470 KGFLEFVDAKIDPISNAMTP-TGYCIEIFEAVLKKLPYSVIPKYIAFLSPDE----NYDE 524
Query: 119 LIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLT 178
++YQV+ G +DA VGD+TI+ NRS YVDFTLPYTESGVSM+VP+KD+K N WVFL+P +
Sbjct: 525 MVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTESGVSMMVPLKDNK--NTWVFLRPWS 582
Query: 179 WDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNL 238
DLWVT+ CFF+FIGF+VW LEHRVN DFRGP HQ+GTSFWF+FSTM F+ RE+V+SNL
Sbjct: 583 LDLWVTTACFFVFIGFIVWILEHRVNTDFRGPPHHQIGTSFWFAFSTMNFAHREKVVSNL 642
Query: 239 ARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQKGSFVLGI 298
ARFVV+VW FVVLVL QSYTA+LTS TV+ LQPT+T+ K LIK N+GYQ+G+FV +
Sbjct: 643 ARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKDLIKFNKNIGYQRGTFVREL 702
Query: 299 LKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPT 358
LK GFDE +L + S EC ELF +NG I A+F+E+ Y K+++ Q+ KYTMVEP+
Sbjct: 703 LKSQGFDESQLKPFGSAVECDELF----SNGTITASFDEVAYIKVILSQNSSKYTMVEPS 758
Query: 359 FKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLG 418
FKTAGFGF FP SPL DVS+AIL+VT+G++M+ IE+ WFKK ++CPD +T +SS L
Sbjct: 759 FKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIENKWFKKPNNCPDLNTSLSSNHLS 818
Query: 419 LNSFWGLFLIAGIAAILALIIFLAVFVGQHRNVL-RNSESSLLSRIRIFLRIFVSKDLSA 477
L+SFWGLFLIAGIA+ LAL+IF+A F+ +H++ L +SE+S +++ +R F KD+ +
Sbjct: 819 LSSFWGLFLIAGIASFLALLIFVANFLYEHKHTLFDDSENSFRGKLKFLVRNFDEKDIKS 878
Query: 478 HTFKDKGGIQVHS---MGATEASPDSR--YPASPSSYSQ 511
H FK+ V S G++ D P SP Y +
Sbjct: 879 HMFKENAVHNVSSPITQGSSSPLTDQSTPLPRSPEQYRE 917
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Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2 | Back alignment and function description |
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| >sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1 | Back alignment and function description |
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| >sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LFN8|GLR26_ARATH Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2 | Back alignment and function description |
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| >sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9C8E7|GLR33_ARATH Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| 255548644 | 931 | glutamate receptor 2 plant, putative [Ri | 0.950 | 0.572 | 0.639 | 0.0 | |
| 255548642 | 961 | glutamate receptor 2 plant, putative [Ri | 0.966 | 0.563 | 0.622 | 0.0 | |
| 224142043 | 885 | glutamate-gated kainate-type ion channel | 0.877 | 0.555 | 0.658 | 0.0 | |
| 224142035 | 869 | glutamate-gated kainate-type ion channel | 0.860 | 0.555 | 0.658 | 0.0 | |
| 224142031 | 867 | glutamate-gated kainate-type ion channel | 0.860 | 0.557 | 0.664 | 0.0 | |
| 359476430 | 953 | PREDICTED: glutamate receptor 2.7-like, | 0.989 | 0.582 | 0.577 | 0.0 | |
| 255548632 | 971 | glutamate receptor 2 plant, putative [Ri | 0.951 | 0.549 | 0.597 | 0.0 | |
| 224142049 | 883 | glutamate-gated kainate-type ion channel | 0.877 | 0.557 | 0.640 | 0.0 | |
| 359476446 | 983 | PREDICTED: glutamate receptor 2.8-like [ | 0.983 | 0.561 | 0.598 | 0.0 | |
| 296083756 | 1842 | unnamed protein product [Vitis vinifera] | 0.983 | 0.299 | 0.576 | 0.0 |
| >gi|255548644|ref|XP_002515378.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223545322|gb|EEF46827.1| glutamate receptor 2 plant, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/563 (63%), Positives = 426/563 (75%), Gaps = 30/563 (5%)
Query: 1 RGIGFWTPEKGLTQKLSS------NSTTKSKLKPIIWPGDSTSDPKGWEVPTNEKKLRIG 54
RG+GFWTP+KGLT+KL+S ST++S L P+IWPGDS+S PKGWE+PT KKLRI
Sbjct: 382 RGLGFWTPQKGLTKKLNSVAVTNLYSTSESNLAPVIWPGDSSSVPKGWEIPTKGKKLRIL 441
Query: 55 VPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSG 114
VPVK+GF+ FV VT DP T T+V G+CIDVF AV++ LPYAV Y++ P+ PDG+S+G
Sbjct: 442 VPVKEGFNEFVKVTRDPSTNT-TTVRGYCIDVFDAVVKALPYAVTYEYTPFVNPDGSSAG 500
Query: 115 SYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFL 174
+Y+DL+YQV+ GEFDA VGD TI+ NRS YVDFT PYTESGVSMIVPIKD+ +NAWVF+
Sbjct: 501 TYDDLVYQVYTGEFDAVVGDTTIIANRSLYVDFTFPYTESGVSMIVPIKDNNSKNAWVFV 560
Query: 175 QPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERV 234
+PLTWDLWVTS CFF+FIGFVVW LEHR+NEDFRGP HQ GT+FWFSFSTMVF+ RERV
Sbjct: 561 KPLTWDLWVTSFCFFVFIGFVVWVLEHRINEDFRGPPSHQAGTAFWFSFSTMVFAHRERV 620
Query: 235 ISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQKGSF 294
+SNLAR VVI+W FVVL+LTQSYTASLTSLLTVQQL PT+TDV LI DNVGY +GSF
Sbjct: 621 VSNLARLVVIIWCFVVLILTQSYTASLTSLLTVQQLMPTVTDVHQLISNEDNVGYLQGSF 680
Query: 295 VLGILKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTM 354
VLGILK LGF E K VYNS EEC+ELF KG+ NGGIAAAF+E+PY KL + Q+C KYTM
Sbjct: 681 VLGILKGLGFHESKFKVYNSTEECNELFVKGTRNGGIAAAFDEVPYIKLFLAQYCSKYTM 740
Query: 355 VEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCPDASTVVSS 414
VEPTFKT GFGF FP SPLV DVS+AIL V +GD MK+I +AWF K SSCPD ST VSS
Sbjct: 741 VEPTFKTGGFGFVFPKRSPLVPDVSRAILDVIQGDDMKKIGEAWFGKQSSCPDPSTTVSS 800
Query: 415 RSLGLNSFWGLFLIAGIAAILALIIFLAVFVGQHRNVLR--NSESSLLSRIRIFLRIFVS 472
SL L SFWGLFLIAG A+ LAL+I+ A+F +H ++R +SE+ + SRI LRIF
Sbjct: 801 NSLSLRSFWGLFLIAGTASALALMIYGAMFTYEHWQIIRRSDSEARIWSRIVHLLRIFDE 860
Query: 473 KDLSAHTFKDKGGIQVHSMGATEASPDSRYPASPSSYSQHADSHFGFYGEQGTPRTEYAQ 532
KDL +HTF+ ++ SMGA SPS YS D F GEQGTP EY
Sbjct: 861 KDLKSHTFRKSEANEI-SMGA----------PSPSIYSVQTD----FPGEQGTPSAEYGD 905
Query: 533 APPE------IVSAVELTNPDQE 549
PE +V +EL N +Q+
Sbjct: 906 PNPEEQPTQAVVLNIELVNSNQD 928
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548642|ref|XP_002515377.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223545321|gb|EEF46826.1| glutamate receptor 2 plant, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224142043|ref|XP_002324368.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865802|gb|EEF02933.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224142035|ref|XP_002324364.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865798|gb|EEF02929.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224142031|ref|XP_002324363.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865797|gb|EEF02928.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359476430|ref|XP_002268837.2| PREDICTED: glutamate receptor 2.7-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255548632|ref|XP_002515372.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223545316|gb|EEF46821.1| glutamate receptor 2 plant, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224142049|ref|XP_002324371.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865805|gb|EEF02936.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|359476446|ref|XP_003631841.1| PREDICTED: glutamate receptor 2.8-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296083756|emb|CBI23973.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| TAIR|locus:2066107 | 952 | GLR2.7 "glutamate receptor 2.7 | 0.891 | 0.525 | 0.462 | 3.5e-123 | |
| TAIR|locus:2066086 | 947 | GLR2.8 "glutamate receptor 2.8 | 0.877 | 0.519 | 0.477 | 7.2e-123 | |
| TAIR|locus:2066148 | 940 | GLR2.9 "glutamate receptor 2.9 | 0.871 | 0.520 | 0.465 | 4.7e-119 | |
| TAIR|locus:2047256 | 920 | GLR2.2 "glutamate receptor 2.2 | 0.752 | 0.458 | 0.503 | 3.3e-111 | |
| TAIR|locus:2047251 | 895 | GLR2.3 "glutamate receptor 2.3 | 0.700 | 0.439 | 0.506 | 1.1e-105 | |
| TAIR|locus:2181196 | 901 | GLR2.1 "glutamate receptor 2.1 | 0.739 | 0.460 | 0.480 | 7.5e-105 | |
| TAIR|locus:2206095 | 933 | GLR3.3 "glutamate receptor 3.3 | 0.823 | 0.495 | 0.351 | 5.1e-74 | |
| TAIR|locus:2207165 | 959 | GLR3.4 "AT1G05200" [Arabidopsi | 0.686 | 0.401 | 0.389 | 2.8e-73 | |
| TAIR|locus:2122128 | 912 | GLUR2 "glutamate receptor 2" [ | 0.679 | 0.417 | 0.370 | 4.4e-68 | |
| TAIR|locus:2081805 | 903 | GLR3.6 "glutamate receptor 3.6 | 0.684 | 0.425 | 0.371 | 1.2e-67 |
| TAIR|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
Identities = 240/519 (46%), Positives = 325/519 (62%)
Query: 1 RGIGFWTPEKGXXXXXXXXXXXXXXXX--PIIWPGDSTSDPKGWEVPTNEKKLRIGVPVK 58
R IG W P G P+IWPG S PKGW++PTN K LR+G+PVK
Sbjct: 410 RIIGLWRPSNGIVNAKSKNTTSVLGERLGPVIWPGKSKDVPKGWQIPTNGKMLRVGIPVK 469
Query: 59 KGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYND 118
KGF FV+ IDP + T TG+CI++F+AV+++LPY+V ++ + PD +Y++
Sbjct: 470 KGFLEFVDAKIDPISNAMTP-TGYCIEIFEAVLKKLPYSVIPKYIAFLSPDE----NYDE 524
Query: 119 LIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLT 178
++YQV+ G +DA VGD+TI+ NRS YVDFTLPYTESGVSM+VP+KD+K N WVFL+P +
Sbjct: 525 MVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTESGVSMMVPLKDNK--NTWVFLRPWS 582
Query: 179 WDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISNL 238
DLWVT+ CFF+FIGF+VW LEHRVN DFRGP HQ+GTSFWF+FSTM F+ RE+V+SNL
Sbjct: 583 LDLWVTTACFFVFIGFIVWILEHRVNTDFRGPPHHQIGTSFWFAFSTMNFAHREKVVSNL 642
Query: 239 ARXXXXXXXXXXXXXTQSYXXXXXXXXXXXXXXXXITDVKMLIKRGDNVGYQKGSFVLGI 298
AR QSY +T+ K LIK N+GYQ+G+FV +
Sbjct: 643 ARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKDLIKFNKNIGYQRGTFVREL 702
Query: 299 LKQLGFDERKLVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQHCYKYTMVEPT 358
LK GFDE +L + S EC ELF +NG I A+F+E+ Y K+++ Q+ KYTMVEP+
Sbjct: 703 LKSQGFDESQLKPFGSAVECDELF----SNGTITASFDEVAYIKVILSQNSSKYTMVEPS 758
Query: 359 FKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLG 418
FKTAGFGF FP SPL DVS+AIL+VT+G++M+ IE+ WFKK ++CPD +T +SS L
Sbjct: 759 FKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIENKWFKKPNNCPDLNTSLSSNHLS 818
Query: 419 LNSFWXXXXXXXXXXXXXXXXXXXVFVGQHRNVL-RNSESSLLSRIRIFLRIFVSKDLSA 477
L+SFW F+ +H++ L +SE+S +++ +R F KD+ +
Sbjct: 819 LSSFWGLFLIAGIASFLALLIFVANFLYEHKHTLFDDSENSFRGKLKFLVRNFDEKDIKS 878
Query: 478 HTFKDKGGIQVHS---MGATEASPDSR--YPASPSSYSQ 511
H FK+ V S G++ D P SP Y +
Sbjct: 879 HMFKENAVHNVSSPITQGSSSPLTDQSTPLPRSPEQYRE 917
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| TAIR|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2066148 GLR2.9 "glutamate receptor 2.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 561 | |||
| pfam00060 | 268 | pfam00060, Lig_chan, Ligand-gated ion channel | 2e-79 | |
| smart00079 | 133 | smart00079, PBPe, Eukaryotic homologues of bacteri | 9e-25 | |
| pfam00497 | 220 | pfam00497, SBP_bac_3, Bacterial extracellular solu | 2e-07 | |
| cd00134 | 218 | cd00134, PBPb, Bacterial periplasmic transport sys | 4e-07 | |
| COG0834 | 275 | COG0834, HisJ, ABC-type amino acid transport/signa | 4e-07 | |
| smart00062 | 219 | smart00062, PBPb, Bacterial periplasmic substrate- | 5e-07 | |
| pfam00497 | 220 | pfam00497, SBP_bac_3, Bacterial extracellular solu | 2e-05 | |
| cd00134 | 218 | cd00134, PBPb, Bacterial periplasmic transport sys | 1e-04 | |
| COG0834 | 275 | COG0834, HisJ, ABC-type amino acid transport/signa | 0.004 |
| >gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 2e-79
Identities = 87/269 (32%), Positives = 132/269 (49%), Gaps = 16/269 (5%)
Query: 180 DLWVTSGCFFIFIGFVVWALEHRVNEDFRG----PARHQVGTSFWFSFSTMV-FSQRERV 234
++W+ ++ +G V++ LE ++RG P + + S WFSF +V RE
Sbjct: 1 EVWLCILAAYLLVGVVLFLLERFSPYEWRGPPEEPNQFTLSNSLWFSFGALVQQGHRELP 60
Query: 235 ISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQ---- 290
S R +V VW+F L+L SYTA+L + LTV+++Q I ++ L K+ + +GY
Sbjct: 61 RSLSGRILVGVWWFFALILLSSYTANLAAFLTVERMQSPIQSLEDLAKQ-NKIGYGTLRG 119
Query: 291 ---KGSFVLGILKQLGFDERKLVVY---NSPEECHELFQKGSANGGIAAAFEEIPYGKLL 344
F ++ + + E E Q+ G+ A E Y +
Sbjct: 120 GSTFEFFKESKNPTYRRMWEYMISFKGEVNVESYEEGVQRVRKGNGLYAFLMESAYLEYE 179
Query: 345 VGQHCYKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSS 404
V + K T V F T G+G AFP SPL +S+AIL + E +++++E+ W+KK
Sbjct: 180 VARDPCKLTTVGEVFGTKGYGIAFPKGSPLRDKLSRAILELRESGELQKLENKWWKKKGE 239
Query: 405 CPDASTVVSSRSLGLNSFWGLFLIAGIAA 433
C ST VSS LGL SF GLFLI GI
Sbjct: 240 CSLKSTAVSSSQLGLESFAGLFLILGIGL 268
|
This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors. Length = 268 |
| >gnl|CDD|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic substrate binding proteins | Back alignment and domain information |
|---|
| >gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3 | Back alignment and domain information |
|---|
| >gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions | Back alignment and domain information |
|---|
| >gnl|CDD|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins | Back alignment and domain information |
|---|
| >gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3 | Back alignment and domain information |
|---|
| >gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions | Back alignment and domain information |
|---|
| >gnl|CDD|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| KOG1052 | 656 | consensus Glutamate-gated kainate-type ion channel | 100.0 | |
| KOG1054 | 897 | consensus Glutamate-gated AMPA-type ion channel re | 100.0 | |
| KOG1053 | 1258 | consensus Glutamate-gated NMDA-type ion channel re | 100.0 | |
| KOG4440 | 993 | consensus NMDA selective glutamate-gated ion chann | 100.0 | |
| PRK09495 | 247 | glnH glutamine ABC transporter periplasmic protein | 99.9 | |
| PRK10797 | 302 | glutamate and aspartate transporter subunit; Provi | 99.89 | |
| PRK11260 | 266 | cystine transporter subunit; Provisional | 99.89 | |
| PF00497 | 225 | SBP_bac_3: Bacterial extracellular solute-binding | 99.88 | |
| PRK15007 | 243 | putative ABC transporter arginine-biding protein; | 99.87 | |
| PRK11917 | 259 | bifunctional adhesin/ABC transporter aspartate/glu | 99.86 | |
| PRK15010 | 260 | ABC transporter lysine/arginine/ornithine binding | 99.86 | |
| TIGR01096 | 250 | 3A0103s03R lysine-arginine-ornithine-binding perip | 99.86 | |
| TIGR02995 | 275 | ectoine_ehuB ectoine/hydroxyectoine ABC transporte | 99.85 | |
| PRK15437 | 259 | histidine ABC transporter substrate-binding protei | 99.84 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 99.83 | |
| PRK10859 | 482 | membrane-bound lytic transglycosylase F; Provision | 99.81 | |
| TIGR03870 | 246 | ABC_MoxJ methanol oxidation system protein MoxJ. T | 99.77 | |
| COG0834 | 275 | HisJ ABC-type amino acid transport/signal transduc | 99.74 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 99.74 | |
| PF00060 | 148 | Lig_chan: Ligand-gated ion channel; InterPro: IPR0 | 99.74 | |
| TIGR02285 | 268 | conserved hypothetical protein. Members of this fa | 99.73 | |
| TIGR03871 | 232 | ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa | 99.72 | |
| cd00134 | 218 | PBPb Bacterial periplasmic transport systems use m | 99.72 | |
| smart00062 | 219 | PBPb Bacterial periplasmic substrate-binding prote | 99.7 | |
| COG4623 | 473 | Predicted soluble lytic transglycosylase fused to | 99.35 | |
| smart00079 | 134 | PBPe Eukaryotic homologues of bacterial periplasmi | 99.35 | |
| TIGR01098 | 254 | 3A0109s03R phosphate/phosphite/phosphonate ABC tra | 99.06 | |
| PRK00489 | 287 | hisG ATP phosphoribosyltransferase; Reviewed | 98.93 | |
| PF10613 | 65 | Lig_chan-Glu_bd: Ligated ion channel L-glutamate- | 98.56 | |
| TIGR03431 | 288 | PhnD phosphonate ABC transporter, periplasmic phos | 98.32 | |
| PRK11553 | 314 | alkanesulfonate transporter substrate-binding subu | 97.81 | |
| PF12974 | 243 | Phosphonate-bd: ABC transporter, phosphonate, peri | 97.67 | |
| TIGR01729 | 300 | taurine_ABC_bnd taurine ABC transporter, periplasm | 97.21 | |
| TIGR03427 | 328 | ABC_peri_uca ABC transporter periplasmic binding p | 96.91 | |
| PF13379 | 252 | NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ | 96.73 | |
| TIGR01728 | 288 | SsuA_fam ABC transporter, substrate-binding protei | 96.45 | |
| PF03466 | 209 | LysR_substrate: LysR substrate binding domain; Int | 96.25 | |
| PF09084 | 216 | NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent | 96.14 | |
| COG3221 | 299 | PhnD ABC-type phosphate/phosphonate transport syst | 96.12 | |
| cd08442 | 193 | PBP2_YofA_SoxR_like The C-terminal substrate bindi | 96.08 | |
| cd05466 | 197 | PBP2_LTTR_substrate The substrate binding domain o | 96.08 | |
| TIGR02122 | 320 | TRAP_TAXI TRAP transporter solute receptor, TAXI f | 95.92 | |
| cd08412 | 198 | PBP2_PAO1_like The C-terminal substrate-binding do | 95.85 | |
| cd08438 | 197 | PBP2_CidR The C-terminal substrate binding domain | 95.77 | |
| PRK11233 | 305 | nitrogen assimilation transcriptional regulator; P | 95.74 | |
| cd08418 | 201 | PBP2_TdcA The C-terminal substrate binding domain | 95.72 | |
| cd08468 | 202 | PBP2_Pa0477 The C-terminal substrate biniding doma | 95.72 | |
| cd08440 | 197 | PBP2_LTTR_like_4 TThe C-terminal substrate binding | 95.51 | |
| PRK11151 | 305 | DNA-binding transcriptional regulator OxyR; Provis | 95.45 | |
| TIGR00363 | 258 | lipoprotein, YaeC family. This family of putative | 95.34 | |
| cd08421 | 198 | PBP2_LTTR_like_1 The C-terminal substrate binding | 95.33 | |
| cd08459 | 201 | PBP2_DntR_NahR_LinR_like The C-terminal substrate | 95.33 | |
| cd08415 | 196 | PBP2_LysR_opines_like The C-terminal substrate-dom | 95.29 | |
| CHL00180 | 305 | rbcR LysR transcriptional regulator; Provisional | 95.28 | |
| cd08426 | 199 | PBP2_LTTR_like_5 The C-terminal substrate binding | 95.21 | |
| PRK12679 | 316 | cbl transcriptional regulator Cbl; Reviewed | 95.19 | |
| PRK12684 | 313 | transcriptional regulator CysB-like protein; Revie | 95.15 | |
| cd08417 | 200 | PBP2_Nitroaromatics_like The C-terminal substrate | 95.08 | |
| cd08463 | 203 | PBP2_DntR_like_4 The C-terminal substrate binding | 95.0 | |
| TIGR00787 | 257 | dctP tripartite ATP-independent periplasmic transp | 94.96 | |
| PRK09791 | 302 | putative DNA-binding transcriptional regulator; Pr | 94.82 | |
| PRK11480 | 320 | tauA taurine transporter substrate binding subunit | 94.81 | |
| cd08451 | 199 | PBP2_BudR The C-terminal substrate binding domain | 94.73 | |
| cd08419 | 197 | PBP2_CbbR_RubisCO_like The C-terminal substrate bi | 94.71 | |
| cd08433 | 198 | PBP2_Nac The C-teminal substrate binding domain of | 94.63 | |
| cd08462 | 200 | PBP2_NodD The C-terminal substsrate binding domain | 94.58 | |
| cd08466 | 200 | PBP2_LeuO The C-terminal substrate binding domain | 94.55 | |
| cd08411 | 200 | PBP2_OxyR The C-terminal substrate-binding domain | 94.54 | |
| PRK11242 | 296 | DNA-binding transcriptional regulator CynR; Provis | 94.46 | |
| cd08441 | 198 | PBP2_MetR The C-terminal substrate binding domain | 94.44 | |
| cd08461 | 198 | PBP2_DntR_like_3 The C-terminal substrate binding | 94.33 | |
| PRK12680 | 327 | transcriptional regulator CysB-like protein; Revie | 94.28 | |
| cd08429 | 204 | PBP2_NhaR The C-terminal substrate binding domain | 94.18 | |
| cd08420 | 201 | PBP2_CysL_like C-terminal substrate binding domain | 94.17 | |
| TIGR02424 | 300 | TF_pcaQ pca operon transcription factor PcaQ. Memb | 94.01 | |
| PRK12681 | 324 | cysB transcriptional regulator CysB; Reviewed | 93.95 | |
| cd08425 | 197 | PBP2_CynR The C-terminal substrate-binding domain | 93.93 | |
| PRK12683 | 309 | transcriptional regulator CysB-like protein; Revie | 93.92 | |
| PRK10837 | 290 | putative DNA-binding transcriptional regulator; Pr | 93.9 | |
| cd08435 | 201 | PBP2_GbpR The C-terminal substrate binding domain | 93.86 | |
| cd08427 | 195 | PBP2_LTTR_like_2 The C-terminal substrate binding | 93.74 | |
| cd08460 | 200 | PBP2_DntR_like_1 The C-terminal substrate binding | 93.71 | |
| cd08413 | 198 | PBP2_CysB_like The C-terminal substrate domain of | 93.67 | |
| cd08449 | 197 | PBP2_XapR The C-terminal substrate binding domain | 93.6 | |
| cd08445 | 203 | PBP2_BenM_CatM_CatR The C-terminal substrate bindi | 93.52 | |
| cd08430 | 199 | PBP2_IlvY The C-terminal substrate binding of LysR | 93.5 | |
| PRK11063 | 271 | metQ DL-methionine transporter substrate-binding s | 93.45 | |
| cd08434 | 195 | PBP2_GltC_like The substrate binding domain of Lys | 93.31 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 93.21 | |
| cd08469 | 221 | PBP2_PnbR The C-terminal substrate binding domain | 93.2 | |
| cd08464 | 200 | PBP2_DntR_like_2 The C-terminal substrate binding | 92.99 | |
| cd08437 | 198 | PBP2_MleR The substrate binding domain of LysR-typ | 92.99 | |
| cd08465 | 200 | PBP2_ToxR The C-terminal substrate binding domain | 92.98 | |
| PF03480 | 286 | SBP_bac_7: Bacterial extracellular solute-binding | 92.94 | |
| cd08467 | 200 | PBP2_SyrM The C-terminal substrate binding of LysR | 92.93 | |
| cd08443 | 198 | PBP2_CysB The C-terminal substrate domain of LysR- | 92.92 | |
| PRK10341 | 312 | DNA-binding transcriptional activator TdcA; Provis | 92.9 | |
| cd08448 | 197 | PBP2_LTTR_aromatics_like_2 The C-terminal substrat | 92.8 | |
| cd08414 | 197 | PBP2_LTTR_aromatics_like The C-terminal substrate | 92.8 | |
| PRK11062 | 296 | nhaR transcriptional activator NhaR; Provisional | 92.79 | |
| cd08423 | 200 | PBP2_LTTR_like_6 The C-terminal substrate binding | 92.78 | |
| PRK09508 | 314 | leuO leucine transcriptional activator; Reviewed | 92.75 | |
| cd08456 | 196 | PBP2_LysR The C-terminal substrate binding domain | 92.5 | |
| cd08458 | 196 | PBP2_NocR The C-terminal substrate-domain of LysR- | 92.48 | |
| PRK12682 | 309 | transcriptional regulator CysB-like protein; Revie | 92.45 | |
| cd08444 | 198 | PBP2_Cbl The C-terminal substrate binding domain o | 92.11 | |
| cd08416 | 199 | PBP2_MdcR The C-terminal substrate-binding domian | 91.55 | |
| cd08457 | 196 | PBP2_OccR The C-terminal substrate-domain of LysR- | 91.55 | |
| TIGR01256 | 216 | modA molybdenum ABC transporter, periplasmic molyb | 91.29 | |
| cd08486 | 198 | PBP2_CbnR The C-terminal substrate binding domain | 91.21 | |
| cd08453 | 200 | PBP2_IlvR The C-terminal substrate binding domain | 91.01 | |
| cd08436 | 194 | PBP2_LTTR_like_3 The C-terminal substrate binding | 90.9 | |
| PF13531 | 230 | SBP_bac_11: Bacterial extracellular solute-binding | 90.56 | |
| COG1638 | 332 | DctP TRAP-type C4-dicarboxylate transport system, | 89.92 | |
| PRK11013 | 309 | DNA-binding transcriptional regulator LysR; Provis | 89.78 | |
| COG0725 | 258 | ModA ABC-type molybdate transport system, periplas | 89.66 | |
| PRK09906 | 296 | DNA-binding transcriptional regulator HcaR; Provis | 89.51 | |
| TIGR03339 | 279 | phn_lysR aminoethylphosphonate catabolism associat | 89.19 | |
| PF12727 | 193 | PBP_like: PBP superfamily domain; InterPro: IPR024 | 89.19 | |
| PRK15421 | 317 | DNA-binding transcriptional regulator MetR; Provis | 88.98 | |
| cd08446 | 198 | PBP2_Chlorocatechol The C-terminal substrate bindi | 88.85 | |
| PRK11482 | 317 | putative DNA-binding transcriptional regulator; Pr | 88.7 | |
| COG0715 | 335 | TauA ABC-type nitrate/sulfonate/bicarbonate transp | 88.61 | |
| COG1910 | 223 | Periplasmic molybdate-binding protein/domain [Inor | 88.0 | |
| PRK09986 | 294 | DNA-binding transcriptional activator XapR; Provis | 87.83 | |
| PRK11074 | 300 | putative DNA-binding transcriptional regulator; Pr | 87.48 | |
| cd08485 | 198 | PBP2_ClcR The C-terminal substrate binding domain | 87.25 | |
| PRK11716 | 269 | DNA-binding transcriptional regulator IlvY; Provis | 86.92 | |
| cd08450 | 196 | PBP2_HcaR The C-terminal substrate binding domain | 86.8 | |
| PRK10094 | 308 | DNA-binding transcriptional activator AllS; Provis | 86.3 | |
| PRK09861 | 272 | cytoplasmic membrane lipoprotein-28; Provisional | 85.09 | |
| PRK10677 | 257 | modA molybdate transporter periplasmic protein; Pr | 82.83 | |
| PF03401 | 274 | TctC: Tripartite tricarboxylate transporter family | 82.68 | |
| cd08452 | 197 | PBP2_AlsR The C-terminal substrate binding domain | 82.38 | |
| PF14503 | 232 | YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B. | 81.82 | |
| COG2358 | 321 | Imp TRAP-type uncharacterized transport system, pe | 81.34 | |
| PLN02245 | 403 | ATP phosphoribosyl transferase | 80.83 |
| >KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=523.61 Aligned_cols=426 Identities=34% Similarity=0.621 Sum_probs=373.1
Q ss_pred CcceecCCCCCCceecCCCCcccCCccceecCCCCCCCCCCCccCCCCceEEEEecCCCCCcceEEEeeCCCCCCCceEE
Q 037841 1 RGIGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGDSTSDPKGWEVPTNEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVT 80 (561)
Q Consensus 1 ~~~g~w~~~~g~~~~~~~~~~~~~~~~~~~wpg~~~~~p~~~~~~~~g~~LrVgv~~~~~~~pf~~~~~d~~~~~~~~~~ 80 (561)
+.||+|++..| ++|+|||.....|++|.++.+|++++|+++..+||..++... ....+.. .+.
T Consensus 183 ~~ig~W~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~P~~~~~~~~-~~~~~~~-~~~ 245 (656)
T KOG1052|consen 183 RRIGYWYPRGG---------------ENISWPGKDYFVPKGWFFPTNGKPLRVGVVTEPPFVDLVEDL-AILNGND-RIE 245 (656)
T ss_pred eeEEEecCCCC---------------ceeeccCCcccCcCCccccCCCceEEEEEeccCCceeeeecc-cccCCCC-ccc
Confidence 35899999998 589999999999999999999999999999777765444432 1333455 899
Q ss_pred EehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceEEEE
Q 037841 81 GFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIV 160 (561)
Q Consensus 81 G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ivv 160 (561)
|+|+||++++++++||++++..++.+....+++|+|+|++++|.+|++|++ ++++++++|.+++|||.||++.++++++
T Consensus 246 G~~idll~~l~~~l~f~~~~~~~~~~~g~~~~~g~~~g~v~~l~~~~advg-~~~tit~~R~~~vdfT~p~~~~~~~i~~ 324 (656)
T KOG1052|consen 246 GFEIDLLQALAKRLNFSYEIIFVPDGSGSRDPNGNWDGLVGQLVDGEADVG-ADITITPERSKYVDFTIPYLQFGIVIIV 324 (656)
T ss_pred eEEehHHHHHHHhCCCceEEEEcCCCCCCCCCCCChhHHHHHHhcCccccc-cceEEeecccccEEeccceEeccEEEEE
Confidence 999999999999999999998888776444466899999999999999999 8999999999999999999999999999
Q ss_pred EccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCCCCc-----cCccchhHHHHHHHhhhcc-cccc
Q 037841 161 PIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPA-----RHQVGTSFWFSFSTMVFSQ-RERV 234 (561)
Q Consensus 161 p~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~-~~~~ 234 (561)
++++.... .|.|++||++++|++++++++++++++|+++|+.+.++ .++ .....+++|+++++++.++ .+.|
T Consensus 325 ~~~~~~~~-~~~fl~Pf~~~vW~~i~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~p 402 (656)
T KOG1052|consen 325 RKPDSRSK-LWNFLAPFSPEVWLLILASLLLVGLLLWILERLSPYEL-PPRQIVTSLFSLLNCLWLTVGSLLQQGSDEIP 402 (656)
T ss_pred EecCCccc-ceEEecCCcHHHHHHHHHHHHHHHHHHHHHhccccccC-CccccceeEeecccchhhhhHHHhccCCCccc
Confidence 99987765 99999999999999999999999999999999998888 222 1133446799999999887 4688
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHh-CCCeeEEEeCchHHHHHHhc----CCCcc-c
Q 037841 235 ISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIK-RGDNVGYQKGSFVLGILKQL----GFDER-K 308 (561)
Q Consensus 235 ~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~-~~~~vg~~~gs~~~~~l~~~----~~~~~-~ 308 (561)
++.++|+++++||++++||+++|||+|+|+||+++..++|++++||++ ++..+|++.+++...++++. .+... +
T Consensus 403 ~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~~~~~i~~~~dL~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (656)
T KOG1052|consen 403 RSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPRLRSPIDSLDDLADQSNIPYGTQRGSFTRIYLEESEDMWAFKVSQR 482 (656)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccCHHHHHHhcCCeEEEEecchHHHHHHHHHHHHhhhccCC
Confidence 999999999999999999999999999999999999999999999994 78899999999999999764 23344 6
Q ss_pred eeecCChHHHHHHhhccccCCceeEEeecchhHHHHHhcC-CcceEEeCcccccCceEEEecCCCCChhhHHHHHhhccc
Q 037841 309 LVVYNSPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQH-CYKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTE 387 (561)
Q Consensus 309 ~~~~~s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~-~~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e 387 (561)
.+.+.+.+++.+++.+|.. ++++++.++.++.+.+.++. |+ ++++++.+...+++ ++||||||++.++++|+++.|
T Consensus 483 ~~~~~~~~e~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~c~-~~~v~~~~~~~~~~-~~~~~Spl~~~is~~Il~l~e 559 (656)
T KOG1052|consen 483 SVPLASPEEGVERVRKGPS-GGYAFASDELYLAYLFLRDEICD-LTEVGEPFLYKGYG-AFPKGSPLRSLISRAILKLQE 559 (656)
T ss_pred CccCCCHHHHHHHHHcCCC-CceEEEeccHHHHHHHhhcCCCc-eEEeCCcccCCCcc-eecCCCccHHHHHHHHHhhcc
Confidence 7889999999999999986 55676777777766666655 75 99999999999999 999999999999999999999
Q ss_pred cchhHHHHHHHcccC---CCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 037841 388 GDKMKEIEDAWFKKH---SSCPDASTVVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVGQHRNVL 452 (561)
Q Consensus 388 ~G~~~~i~~kw~~~~---~~c~~~~~~~~~~~L~l~~~~g~F~il~~g~~lallvfl~E~~~~~~~~~ 452 (561)
.|++++++++|+.+. ..|.... +...|++++++|+|+++++|+++|+++|++|++|++++..
T Consensus 560 ~g~l~~~~~kw~~~~~~~~~~~~~~---~~~~l~~~~~~g~F~i~~~g~~lal~vfi~E~~~~~~~~~ 624 (656)
T KOG1052|consen 560 TGILQKLKRKWFSKKPCLPKCSQTE---KTKALDLESFWGLFLILLVGYLLALLVFILELLYSRRRTL 624 (656)
T ss_pred ccHHHHHHHHhccCCCCCCCCCCcc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999765 4444433 6788999999999999999999999999999999988875
|
|
| >KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed | Back alignment and domain information |
|---|
| >PRK10797 glutamate and aspartate transporter subunit; Provisional | Back alignment and domain information |
|---|
| >PRK11260 cystine transporter subunit; Provisional | Back alignment and domain information |
|---|
| >PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane | Back alignment and domain information |
|---|
| >PRK15007 putative ABC transporter arginine-biding protein; Provisional | Back alignment and domain information |
|---|
| >PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed | Back alignment and domain information |
|---|
| >PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein | Back alignment and domain information |
|---|
| >TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein | Back alignment and domain information |
|---|
| >PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK10859 membrane-bound lytic transglycosylase F; Provisional | Back alignment and domain information |
|---|
| >TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ | Back alignment and domain information |
|---|
| >COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory | Back alignment and domain information |
|---|
| >TIGR02285 conserved hypothetical protein | Back alignment and domain information |
|---|
| >TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein | Back alignment and domain information |
|---|
| >cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions | Back alignment and domain information |
|---|
| >smart00062 PBPb Bacterial periplasmic substrate-binding proteins | Back alignment and domain information |
|---|
| >COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins | Back alignment and domain information |
|---|
| >TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein | Back alignment and domain information |
|---|
| >PRK00489 hisG ATP phosphoribosyltransferase; Reviewed | Back alignment and domain information |
|---|
| >PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] | Back alignment and domain information |
|---|
| >TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein | Back alignment and domain information |
|---|
| >PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional | Back alignment and domain information |
|---|
| >PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A | Back alignment and domain information |
|---|
| >TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein | Back alignment and domain information |
|---|
| >TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region | Back alignment and domain information |
|---|
| >PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A | Back alignment and domain information |
|---|
| >TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family | Back alignment and domain information |
|---|
| >PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins [] | Back alignment and domain information |
|---|
| >PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins | Back alignment and domain information |
|---|
| >COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >cd08442 PBP2_YofA_SoxR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd05466 PBP2_LTTR_substrate The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily | Back alignment and domain information |
|---|
| >TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family | Back alignment and domain information |
|---|
| >cd08412 PBP2_PAO1_like The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily | Back alignment and domain information |
|---|
| >cd08438 PBP2_CidR The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK11233 nitrogen assimilation transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >cd08418 PBP2_TdcA The C-terminal substrate binding domain of LysR-type transcriptional regulator TdcA, which is involved in the degradation of L-serine and L-threonine, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08468 PBP2_Pa0477 The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08440 PBP2_LTTR_like_4 TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK11151 DNA-binding transcriptional regulator OxyR; Provisional | Back alignment and domain information |
|---|
| >TIGR00363 lipoprotein, YaeC family | Back alignment and domain information |
|---|
| >cd08421 PBP2_LTTR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08459 PBP2_DntR_NahR_LinR_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08415 PBP2_LysR_opines_like The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >CHL00180 rbcR LysR transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >cd08426 PBP2_LTTR_like_5 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK12679 cbl transcriptional regulator Cbl; Reviewed | Back alignment and domain information |
|---|
| >PRK12684 transcriptional regulator CysB-like protein; Reviewed | Back alignment and domain information |
|---|
| >cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08463 PBP2_DntR_like_4 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family | Back alignment and domain information |
|---|
| >PRK09791 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK11480 tauA taurine transporter substrate binding subunit; Provisional | Back alignment and domain information |
|---|
| >cd08451 PBP2_BudR The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08419 PBP2_CbbR_RubisCO_like The C-terminal substrate binding of LysR-type transcriptional regulator (CbbR) of RubisCO operon, which is involved in the carbon dioxide fixation, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08433 PBP2_Nac The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08462 PBP2_NodD The C-terminal substsrate binding domain of NodD family of LysR-type transcriptional regulators that regulates the expression of nodulation (nod) genes; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08466 PBP2_LeuO The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily | Back alignment and domain information |
|---|
| >PRK11242 DNA-binding transcriptional regulator CynR; Provisional | Back alignment and domain information |
|---|
| >cd08441 PBP2_MetR The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08461 PBP2_DntR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK12680 transcriptional regulator CysB-like protein; Reviewed | Back alignment and domain information |
|---|
| >cd08429 PBP2_NhaR The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08420 PBP2_CysL_like C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >TIGR02424 TF_pcaQ pca operon transcription factor PcaQ | Back alignment and domain information |
|---|
| >PRK12681 cysB transcriptional regulator CysB; Reviewed | Back alignment and domain information |
|---|
| >cd08425 PBP2_CynR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator CynR, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK12683 transcriptional regulator CysB-like protein; Reviewed | Back alignment and domain information |
|---|
| >PRK10837 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >cd08435 PBP2_GbpR The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08427 PBP2_LTTR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08460 PBP2_DntR_like_1 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08413 PBP2_CysB_like The C-terminal substrate domain of LysR-type transcriptional regulators CysB-like contains type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08449 PBP2_XapR The C-terminal substrate binding domain of LysR-type transcriptional regulator XapR involved in xanthosine catabolism, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08430 PBP2_IlvY The C-terminal substrate binding of LysR-type transcriptional regulator IlvY, which activates the expression of ilvC gene that encoding acetohydroxy acid isomeroreductase for the biosynthesis of branched amino acids; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional | Back alignment and domain information |
|---|
| >cd08434 PBP2_GltC_like The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >cd08469 PBP2_PnbR The C-terminal substrate binding domain of LysR-type transcriptional regulator PnbR, which is involved in regulating the pnb genes encoding enzymes for 4-nitrobenzoate catabolism, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08464 PBP2_DntR_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08437 PBP2_MleR The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold | Back alignment and domain information |
|---|
| >cd08465 PBP2_ToxR The C-terminal substrate binding domain of LysR-type transcriptional regulator ToxR regulates the expression of the toxoflavin biosynthesis genes; contains the type 2 periplasmic bindinig fold | Back alignment and domain information |
|---|
| >PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane | Back alignment and domain information |
|---|
| >cd08467 PBP2_SyrM The C-terminal substrate binding of LysR-type symbiotic regulator SyrM, which activates expression of nodulation gene NodD3, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08443 PBP2_CysB The C-terminal substrate domain of LysR-type transcriptional regulator CysB contains type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK10341 DNA-binding transcriptional activator TdcA; Provisional | Back alignment and domain information |
|---|
| >cd08448 PBP2_LTTR_aromatics_like_2 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08414 PBP2_LTTR_aromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK11062 nhaR transcriptional activator NhaR; Provisional | Back alignment and domain information |
|---|
| >cd08423 PBP2_LTTR_like_6 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK09508 leuO leucine transcriptional activator; Reviewed | Back alignment and domain information |
|---|
| >cd08456 PBP2_LysR The C-terminal substrate binding domain of LysR, transcriptional regulator for lysine biosynthesis, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08458 PBP2_NocR The C-terminal substrate-domain of LysR-type transcriptional regulator, NocR, involved in the catabolism of nopaline, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK12682 transcriptional regulator CysB-like protein; Reviewed | Back alignment and domain information |
|---|
| >cd08444 PBP2_Cbl The C-terminal substrate binding domain of LysR-type transcriptional regulator Cbl, which is required for expression of sulfate starvation-inducible (ssi) genes, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08416 PBP2_MdcR The C-terminal substrate-binding domian of LysR-type transcriptional regulator MdcR, which involved in the malonate catabolism contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08457 PBP2_OccR The C-terminal substrate-domain of LysR-type transcriptional regulator, OccR, involved in the catabolism of octopine, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein | Back alignment and domain information |
|---|
| >cd08486 PBP2_CbnR The C-terminal substrate binding domain of LysR-type transcriptional regulator, CbnR, involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08453 PBP2_IlvR The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >cd08436 PBP2_LTTR_like_3 The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A | Back alignment and domain information |
|---|
| >COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11013 DNA-binding transcriptional regulator LysR; Provisional | Back alignment and domain information |
|---|
| >COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09906 DNA-binding transcriptional regulator HcaR; Provisional | Back alignment and domain information |
|---|
| >TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator | Back alignment and domain information |
|---|
| >PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily [] | Back alignment and domain information |
|---|
| >PRK15421 DNA-binding transcriptional regulator MetR; Provisional | Back alignment and domain information |
|---|
| >cd08446 PBP2_Chlorocatechol The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the chlorocatechol catabolism, contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK11482 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09986 DNA-binding transcriptional activator XapR; Provisional | Back alignment and domain information |
|---|
| >PRK11074 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >cd08485 PBP2_ClcR The C-terminal substrate binding domain of LysR-type transcriptional regulator ClcR involved in the chlorocatechol catabolism, contains type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK11716 DNA-binding transcriptional regulator IlvY; Provisional | Back alignment and domain information |
|---|
| >cd08450 PBP2_HcaR The C-terminal substrate binding domain of LysR-type transcriptional regulator HcaR in involved in 3-phenylpropionic acid catabolism, contains the type2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK10094 DNA-binding transcriptional activator AllS; Provisional | Back alignment and domain information |
|---|
| >PRK09861 cytoplasmic membrane lipoprotein-28; Provisional | Back alignment and domain information |
|---|
| >PRK10677 modA molybdate transporter periplasmic protein; Provisional | Back alignment and domain information |
|---|
| >PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth [] | Back alignment and domain information |
|---|
| >cd08452 PBP2_AlsR The C-terminal substrate binding domain of LysR-type trnascriptional regulator AlsR, which regulates acetoin formation under stationary phase growth conditions; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B | Back alignment and domain information |
|---|
| >COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02245 ATP phosphoribosyl transferase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 561 | ||||
| 3oek_A | 286 | Crystal Structure Of Glun2d Ligand-Binding Core In | 6e-10 | ||
| 2a5s_A | 284 | Crystal Structure Of The Nr2a Ligand Binding Core I | 1e-07 | ||
| 3kg2_A | 823 | Ampa Subtype Ionotropic Glutamate Receptor In Compl | 1e-07 | ||
| 1pb8_A | 292 | Crystal Structure Of The Nr1 Ligand Binding Core In | 3e-05 | ||
| 1pb7_A | 292 | Crystal Structure Of The Nr1 Ligand Binding Core In | 5e-05 | ||
| 4io2_A | 248 | Crystal Structure Of The Avglur1 Ligand Binding Dom | 4e-04 | ||
| 3t9x_B | 258 | Glutamate Bound To A Double Cysteine Mutant (V484cE | 4e-04 | ||
| 3u92_A | 257 | Crystal Structure Of The Gluk3 Ligand Binding Domai | 9e-04 |
| >pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex With L- Aspartate Length = 286 | Back alignment and structure |
|
| >pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In Complex With Glutamate Length = 284 | Back alignment and structure |
| >pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 | Back alignment and structure |
| >pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In Complex With D-Serine At 1.45 Angstroms Resolution Length = 292 | Back alignment and structure |
| >pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In Complex With Glycine At 1.35 Angstroms Resolution Length = 292 | Back alignment and structure |
| >pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain Complex With Glutamate At 1.37 Angstrom Resolution Length = 248 | Back alignment and structure |
| >pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C) OF THE Ligand Binding Domain Of Glua2 Length = 258 | Back alignment and structure |
| >pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain Complex With Kainate And Zinc: P2221 Form Length = 257 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 | Back alignment and structure |
|---|
Score = 341 bits (874), Expect = e-108
Identities = 92/488 (18%), Positives = 182/488 (37%), Gaps = 56/488 (11%)
Query: 1 RGIGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGDSTSDPKGWEVPTNEKKLRIGVPVKKG 60
R IG+W+ + S + K + E P
Sbjct: 360 RKIGYWSEVDKMVLTEDDTSGLEQKTVVVTTI---------LESP--------------- 395
Query: 61 FSYFVNVTI-DPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVPYGQ--PDGTSSGSYN 117
+V + G+C+D+ + + + V G+ + +N
Sbjct: 396 ---YVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWN 452
Query: 118 DLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPL 177
++ ++ G+ D A+ +TI L R +DF+ P+ G+S+++ K + FL PL
Sbjct: 453 GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPL 512
Query: 178 TWDLWVTSGCFFIFIGFVVWALEHRV-----NEDFRGPARHQ---------VGTSFWFSF 223
+++W+ +I + V++ + E+F Q + S WFS
Sbjct: 513 AYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSL 572
Query: 224 STMVFSQRERVISNLA-RFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIK 282
+ + +L+ R V VW+F L++ SYTA+L + LTV+++ I + L K
Sbjct: 573 GAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSK 632
Query: 283 RGD-NVGYQKGSFVLG-ILKQLGFDERKLVVYNSPEEC-------HELFQKGSANGGIAA 333
+ + G + K+ Y E E + + G A
Sbjct: 633 QTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYA 692
Query: 334 AFEEIPYGKLLVGQHCYKYTMVEPTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGDKMKE 393
E + + + V + G+G A P S L V+ A+L ++E + +
Sbjct: 693 YLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDK 752
Query: 394 IEDAWFKKHSSCP--DASTVVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVGQHRNV 451
+++ W+ C D+ + + +L L++ G+F I LA+++ L F + R
Sbjct: 753 LKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAE 812
Query: 452 LRNSESSL 459
+ + +
Sbjct: 813 AKRMKGLV 820
|
| >1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312 | Back alignment and structure |
|---|
| >3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 | Back alignment and structure |
|---|
| >3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 | Back alignment and structure |
|---|
| >2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 | Back alignment and structure |
|---|
| >2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 | Back alignment and structure |
|---|
| >2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 | Back alignment and structure |
|---|
| >2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 | Back alignment and structure |
|---|
| >1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 | Back alignment and structure |
|---|
| >1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 | Back alignment and structure |
|---|
| >2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 | Back alignment and structure |
|---|
| >2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 | Back alignment and structure |
|---|
| >1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 | Back alignment and structure |
|---|
| >1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 | Back alignment and structure |
|---|
| >4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259 | Back alignment and structure |
|---|
| >4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259 | Back alignment and structure |
|---|
| >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Length = 239 | Back alignment and structure |
|---|
| >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Length = 239 | Back alignment and structure |
|---|
| >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Length = 228 | Back alignment and structure |
|---|
| >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Length = 228 | Back alignment and structure |
|---|
| >2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Length = 257 | Back alignment and structure |
|---|
| >2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Length = 257 | Back alignment and structure |
|---|
| >1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Length = 233 | Back alignment and structure |
|---|
| >1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Length = 233 | Back alignment and structure |
|---|
| >2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Length = 259 | Back alignment and structure |
|---|
| >2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Length = 291 | Back alignment and structure |
|---|
| >2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Length = 271 | Back alignment and structure |
|---|
| >2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Length = 271 | Back alignment and structure |
|---|
| >1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Length = 292 | Back alignment and structure |
|---|
| >2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Length = 272 | Back alignment and structure |
|---|
| >2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Length = 272 | Back alignment and structure |
|---|
| >2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Length = 283 | Back alignment and structure |
|---|
| >3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} Length = 245 | Back alignment and structure |
|---|
| >3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} Length = 245 | Back alignment and structure |
|---|
| >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} Length = 237 | Back alignment and structure |
|---|
| >2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Length = 287 | Back alignment and structure |
|---|
| >4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249 | Back alignment and structure |
|---|
| >4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249 | Back alignment and structure |
|---|
| >2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
| >4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Length = 246 | Back alignment and structure |
|---|
| >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Length = 226 | Back alignment and structure |
|---|
| >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Length = 226 | Back alignment and structure |
|---|
| >3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Length = 268 | Back alignment and structure |
|---|
| >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} Length = 242 | Back alignment and structure |
|---|
| >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} Length = 242 | Back alignment and structure |
|---|
| >3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Length = 268 | Back alignment and structure |
|---|
| >3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Length = 268 | Back alignment and structure |
|---|
| >3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} Length = 227 | Back alignment and structure |
|---|
| >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Length = 234 | Back alignment and structure |
|---|
| >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} Length = 234 | Back alignment and structure |
|---|
| >1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Length = 239 | Back alignment and structure |
|---|
| >3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} Length = 232 | Back alignment and structure |
|---|
| >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Length = 267 | Back alignment and structure |
|---|
| >2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Length = 258 | Back alignment and structure |
|---|
| >2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} Length = 258 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| 3kg2_A | 823 | Glutamate receptor 2; ION channel, membrane protei | 100.0 | |
| 1yae_A | 312 | Glutamate receptor, ionotropic kainate 2; kainate | 99.95 | |
| 3g3k_A | 259 | Glutamate receptor, ionotropic kainate 2; membrane | 99.93 | |
| 4h5g_A | 243 | Amino acid ABC superfamily ATP binding cassette tr | 99.93 | |
| 2a5s_A | 284 | N-methyl-D-aspartate receptor nmdar2A subunit, NMD | 99.92 | |
| 4gvo_A | 243 | LMO2349 protein; structural genomics, IDP05245, L- | 99.92 | |
| 2v3u_A | 265 | Glutamate receptor delta-2 subunit; postsynaptic m | 99.92 | |
| 1pb7_A | 292 | N-methyl-D-aspartate receptor subunit 1; ligand bi | 99.92 | |
| 2rc8_A | 294 | Glutamate [NMDA] receptor subunit 3A; membrane pro | 99.91 | |
| 3kzg_A | 237 | Arginine 3RD transport system periplasmic binding | 99.91 | |
| 3k4u_A | 245 | Binding component of ABC transporter; structural g | 99.91 | |
| 1mqi_A | 263 | Glutamate receptor 2; GLUR2, ligand binding core, | 99.9 | |
| 4f3p_A | 249 | Glutamine-binding periplasmic protein; ssgcid, str | 99.9 | |
| 3hv1_A | 268 | Polar amino acid ABC uptake transporter substrate | 99.9 | |
| 3i6v_A | 232 | Periplasmic His/Glu/Gln/Arg/opine family-binding; | 99.9 | |
| 3kbr_A | 239 | Cyclohexadienyl dehydratase; pseudomonas aeruginos | 99.9 | |
| 3del_B | 242 | Arginine binding protein; alpha and beta protein ( | 99.9 | |
| 1ii5_A | 233 | SLR1257 protein; membrane protein; HET: GLU; 1.60A | 99.89 | |
| 3tql_A | 227 | Arginine-binding protein; transport and binding pr | 99.89 | |
| 3h7m_A | 234 | Sensor protein; histidine kinase sensor domain, ki | 99.89 | |
| 1wdn_A | 226 | GLNBP, glutamine binding protein; closed form, com | 99.88 | |
| 3mpk_A | 267 | Virulence sensor protein BVGS; venus flytrap, sens | 99.88 | |
| 2iee_A | 271 | ORF2, probable ABC transporter extracellular-bindi | 99.88 | |
| 4dz1_A | 259 | DALS D-alanine transporter; D-alanine binding, per | 99.88 | |
| 2y7i_A | 229 | STM4351; arginine-binding protein; HET: ARG; 1.90A | 99.88 | |
| 4eq9_A | 246 | ABC transporter substrate-binding protein-amino A | 99.87 | |
| 1lst_A | 239 | Lysine, arginine, ornithine-binding protein; amino | 99.87 | |
| 2q88_A | 257 | EHUB, putative ABC transporter amino acid-binding | 99.86 | |
| 2pyy_A | 228 | Ionotropic glutamate receptor bacterial homologue; | 99.86 | |
| 2pvu_A | 272 | ARTJ; basic amino acid binding protein, ABC transp | 99.85 | |
| 4i62_A | 269 | Amino acid ABC transporter, periplasmic amino ACI | 99.85 | |
| 3qax_A | 268 | Probable ABC transporter arginine-binding protein; | 99.85 | |
| 2vha_A | 287 | Periplasmic binding transport protein; periplasmic | 99.84 | |
| 2yln_A | 283 | Putative ABC transporter, periplasmic binding Pro | 99.84 | |
| 1xt8_A | 292 | Putative amino-acid transporter periplasmic solut | 99.83 | |
| 2yjp_A | 291 | Putative ABC transporter, periplasmic binding Pro | 99.83 | |
| 2v25_A | 259 | Major cell-binding factor; antigen, adhesin, aspar | 99.74 | |
| 3n5l_A | 310 | Binding protein component of ABC phosphonate TRAN; | 98.96 | |
| 3p7i_A | 321 | PHND, subunit of alkylphosphonate ABC transporter; | 98.88 | |
| 2ozz_A | 231 | Hypothetical protein YHFZ; alpha-beta structure, s | 98.73 | |
| 2x26_A | 308 | Periplasmic aliphatic sulphonates-binding protein; | 98.18 | |
| 3ksx_A | 324 | Nitrate transport protein; SSUA, alkanesulfonate-b | 98.14 | |
| 3uif_A | 348 | Sulfonate ABC transporter, periplasmic sulfonate- | 98.03 | |
| 3un6_A | 341 | Hypothetical protein saouhsc_00137; structural gen | 97.85 | |
| 3qsl_A | 346 | Putative exported protein; unknown, structural gen | 97.83 | |
| 3ix1_A | 302 | N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine | 97.66 | |
| 2f5x_A | 312 | BUGD; periplasmic binding protein, transport prote | 97.31 | |
| 2dvz_A | 314 | BUGE, putative exported protein; periplamsic bindi | 97.16 | |
| 2qpq_A | 301 | Protein BUG27; alpha/beta domain, venus flytrap, t | 97.13 | |
| 4ddd_A | 327 | Immunogenic protein; ssgcid, structural genomics, | 96.89 | |
| 2x7q_A | 321 | Ca3427, possible thiamine biosynthesis enzyme; unk | 96.52 | |
| 1zbm_A | 280 | Hypothetical protein AF1704; alpha-beta protein, s | 96.5 | |
| 4ab5_A | 222 | Transcriptional regulator, LYSR family; transcript | 96.43 | |
| 3ho7_A | 232 | OXYR; beta-alpha-barrels, DNA-binding, transcripti | 96.09 | |
| 2zzv_A | 361 | ABC transporter, solute-binding protein; periplasm | 96.01 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 95.92 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 95.9 | |
| 2g29_A | 417 | Nitrate transport protein NRTA; solute-binding pro | 95.55 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 95.51 | |
| 2pfy_A | 301 | Putative exported protein; extracytoplasmic solute | 95.47 | |
| 2pfz_A | 301 | Putative exported protein; extracytoplasmic solute | 95.37 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 95.33 | |
| 1atg_A | 231 | MODA, periplasmic molybdate-binding protein; tungs | 95.21 | |
| 3fzv_A | 306 | Probable transcriptional regulator; LYSR, structur | 95.14 | |
| 3oxn_A | 241 | Putative transcriptional regulator, LYSR family; s | 95.13 | |
| 2hzl_A | 365 | Trap-T family sorbitol/mannitol transporter, perip | 95.11 | |
| 1us5_A | 314 | Putative GLUR0 ligand binding core; receptor, memb | 94.93 | |
| 3jv9_A | 219 | OXYR, transcriptional regulator, LYSR family; LYSR | 94.88 | |
| 2fyi_A | 228 | HTH-type transcriptional regulator CBL; Lys-R fami | 94.75 | |
| 2y7p_A | 218 | LYSR-type regulatory protein; transcription regula | 94.65 | |
| 2esn_A | 310 | Probable transcriptional regulator; PA0477, APC582 | 94.64 | |
| 2ql3_A | 209 | Probable transcriptional regulator, LYSR family P; | 94.63 | |
| 2hxr_A | 238 | HTH-type transcriptional regulator CYNR; CYNR tran | 94.47 | |
| 1al3_A | 324 | Cys regulon transcriptional activator CYSB; LYSR f | 94.13 | |
| 3fxq_A | 305 | LYSR type regulator of TSAMBCD; transcriptional re | 94.12 | |
| 1i6a_A | 219 | OXYR, hydrogen peroxide-inducible genes activator; | 94.08 | |
| 4esw_A | 342 | Pyrimidine biosynthesis enzyme THI13; thiamin pyri | 94.03 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 93.84 | |
| 3gzg_A | 253 | Molybdate-binding periplasmic protein; permease; m | 93.58 | |
| 1ixc_A | 294 | CBNR, LYSR-type regulatory protein; long alpha hel | 93.45 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 92.97 | |
| 3r26_A | 237 | Molybdate-binding periplasmic protein; protein bin | 92.86 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 92.08 | |
| 2xwv_A | 312 | Sialic acid-binding periplasmic protein SIAP; tran | 92.06 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 92.01 | |
| 2i49_A | 429 | Bicarbonate transporter; alpha-beta protein, C-cla | 92.0 | |
| 1sw5_A | 275 | Osmoprotection protein (PROX); binding-protein, co | 91.86 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 91.76 | |
| 2h9b_A | 312 | HTH-type transcriptional regulator BENM; LTTR, tra | 91.5 | |
| 1uth_A | 315 | LYSR-type regulatory protein; transcription regula | 91.37 | |
| 2hpg_A | 327 | ABC transporter, periplasmic substrate-binding pro | 91.18 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 91.17 | |
| 2h98_A | 313 | HTH-type transcriptional regulator CATM; BENM, LTT | 90.79 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 90.79 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 90.78 | |
| 1r9l_A | 309 | Glycine betaine-binding periplasmic protein; perip | 90.51 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 90.47 | |
| 3kos_A | 219 | HTH-type transcriptional activator AMPR; alpha-bet | 90.28 | |
| 1xs5_A | 241 | 29 kDa protein, membrane lipoprotein TPN32; peripl | 90.09 | |
| 2vpn_A | 316 | Periplasmic substrate binding protein; ectoine, hy | 89.34 | |
| 1twy_A | 290 | ABC transporter, periplasmic substrate-binding PR; | 89.09 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 88.89 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 88.76 | |
| 3onm_A | 238 | Transcriptional regulator LRHA; LYSR, ROVM, transc | 88.55 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 87.08 | |
| 3hn0_A | 283 | Nitrate transport protein; ABC transporter, struct | 85.45 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 84.32 | |
| 2rin_A | 298 | Putative glycine betaine-binding ABC transporter p | 84.28 | |
| 2de3_A | 365 | Dibenzothiophene desulfurization enzyme B; alpha-b | 82.47 | |
| 3k6v_A | 354 | Solute-binding protein MA_0280; MODA, molybdate, p | 82.09 | |
| 3tmg_A | 280 | Glycine betaine, L-proline ABC transporter, glycin | 81.89 | |
| 3l6g_A | 256 | Betaine ABC transporter permease and substrate BI | 81.2 | |
| 2czl_A | 272 | Hypothetical protein TTHA1568; conserved hypotheti | 81.17 | |
| 3hhf_B | 213 | Transcriptional regulator, LYSR family; transcript | 80.64 | |
| 4ef1_A | 246 | Pheromone COB1/lipoprotein, YAEC family; periplasm | 80.26 |
| >3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=505.82 Aligned_cols=419 Identities=20% Similarity=0.363 Sum_probs=339.6
Q ss_pred CcceecCCCCCCceecCCCCcccCCccceecCCCCCCCCCCCccCCCCceEEEEecCCCCCcceEEEee--CCCCCCCce
Q 037841 1 RGIGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGDSTSDPKGWEVPTNEKKLRIGVPVKKGFSYFVNVTI--DPKTQEPTS 78 (561)
Q Consensus 1 ~~~g~w~~~~g~~~~~~~~~~~~~~~~~~~wpg~~~~~p~~~~~~~~g~~LrVgv~~~~~~~pf~~~~~--d~~~~~~~~ 78 (561)
+.||+|++++|+....+ -...+++++|+|++.. ++||++... ++.++++ +
T Consensus 360 ~~vg~w~~~~g~~~~~~------------------------~~~~~~~~~l~v~~~~---~~P~~~~~~~~~~~~~~~-~ 411 (823)
T 3kg2_A 360 RKIGYWSEVDKMVLTED------------------------DTSGLEQKTVVVTTIL---ESPYVMMKANHAALAGNE-R 411 (823)
T ss_dssp EEEEEEETTTEEEECCC------------------------CCSSCCCCCEEEEECC---CTTTSEECTTGGGCCGGG-G
T ss_pred eeEEEEcCCCCceeccC------------------------cccccCCCEEEEEEec---CCCcEEEecCccccCCCC-c
Confidence 36899999999885431 0113568999999974 455666532 2224566 8
Q ss_pred EEEehHHHHHHHHHHCCCceeEEEEecCCCCCC---CCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccc
Q 037841 79 VTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGT---SSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESG 155 (561)
Q Consensus 79 ~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~---~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~ 155 (561)
+.|+++|+++++++++|+++++..++.+ .+|. .||+|++++++|.+|++|++++++++|++|.+.+|||.||+.++
T Consensus 412 ~~G~~~dl~~~~a~~l~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~ 490 (823)
T 3kg2_A 412 YEGYCVDLAAEIAKHCGFKYKLTIVGDG-KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLG 490 (823)
T ss_dssp EESHHHHHHHHHHHHHTCCEEEEECSSC-CCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEEC
T ss_pred eEEEHHHHHHHHHHHcCCcEEEEEccCC-cccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCC
Confidence 9999999999999999997777665533 2332 67899999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCCCC--------------ccCccchhHHH
Q 037841 156 VSMIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGP--------------ARHQVGTSFWF 221 (561)
Q Consensus 156 ~~ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~~~--------------~~~~~~~~~~~ 221 (561)
+++++|++....++++.|++||++.+|++++++++++++++|+++|..+.+++.+ ...++.+++|+
T Consensus 491 ~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (823)
T 3kg2_A 491 ISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWF 570 (823)
T ss_dssp EEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHH
T ss_pred EEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHH
Confidence 9999999887667899999999999999999999999999999998753332211 12357789999
Q ss_pred HHHHhhhcccc-ccccchhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCC-eeEEEeCchHHHHH
Q 037841 222 SFSTMVFSQRE-RVISNLARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD-NVGYQKGSFVLGIL 299 (561)
Q Consensus 222 ~~~~l~~~~~~-~~~s~~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~-~vg~~~gs~~~~~l 299 (561)
+++++++++.. .|++.+.|+++++|++++||++++|+|+|+|+||++++.++|++++||.+++. ++|+..++...+++
T Consensus 571 ~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~ 650 (823)
T 3kg2_A 571 SLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFF 650 (823)
T ss_dssp TTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHH
T ss_pred HHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHH
Confidence 99999988854 67999999999999999999999999999999999999999999999997653 67777788888888
Q ss_pred HhcCCCc-----------cceeecCChHHHHHHhh-ccccCCceeEEeecchhHHHHHhcC-CcceEEeCcccccCceEE
Q 037841 300 KQLGFDE-----------RKLVVYNSPEECHELFQ-KGSANGGIAAAFEEIPYGKLLVGQH-CYKYTMVEPTFKTAGFGF 366 (561)
Q Consensus 300 ~~~~~~~-----------~~~~~~~s~~~~~~~l~-~g~~~~gv~a~i~~~~~~~~~l~~~-~~~l~~v~~~~~~~~~~~ 366 (561)
++..... ...+.+.+.+++++++. .+. .+|++.+.+.+.|+.++. |+ +.++++.+...++++
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~ 725 (823)
T 3kg2_A 651 RRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG----KYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGI 725 (823)
T ss_dssp HHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTT----SEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECC
T ss_pred HhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCC----ceEEEechHHHHHHHhcCCCc-eEEccccccccceeE
Confidence 7643221 01124568899999996 333 689999999999888776 96 889999999999999
Q ss_pred EecCCCCChhhHHHHHhhccccchhHHHHHHHcccCCCCCCCCC--ccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 037841 367 AFPLHSPLVHDVSKAILSVTEGDKMKEIEDAWFKKHSSCPDAST--VVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVF 444 (561)
Q Consensus 367 ~~~k~spl~~~in~~Il~l~e~G~~~~i~~kw~~~~~~c~~~~~--~~~~~~L~l~~~~g~F~il~~g~~lallvfl~E~ 444 (561)
++||||||++.||++|+++.|+|++++|.++|+.+...|..... ..+..+|+++++.|+|+++++|+++|+++|++|+
T Consensus 726 ~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~ 805 (823)
T 3kg2_A 726 ATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEF 805 (823)
T ss_dssp EEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888987542 2466799999999999999999999999999999
Q ss_pred HHHhhcccc
Q 037841 445 VGQHRNVLR 453 (561)
Q Consensus 445 ~~~~~~~~~ 453 (561)
+|+++++++
T Consensus 806 ~~~~~~~~~ 814 (823)
T 3kg2_A 806 CYKSRAEAK 814 (823)
T ss_dssp HHC------
T ss_pred HHHcchhhh
Confidence 998877654
|
| >1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... | Back alignment and structure |
|---|
| >4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* | Back alignment and structure |
|---|
| >2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* | Back alignment and structure |
|---|
| >4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A | Back alignment and structure |
|---|
| >2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A | Back alignment and structure |
|---|
| >1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A | Back alignment and structure |
|---|
| >2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A | Back alignment and structure |
|---|
| >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... | Back alignment and structure |
|---|
| >4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} | Back alignment and structure |
|---|
| >3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A | Back alignment and structure |
|---|
| >3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A | Back alignment and structure |
|---|
| >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A | Back alignment and structure |
|---|
| >2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
| >4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A | Back alignment and structure |
|---|
| >2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
| >4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* | Back alignment and structure |
|---|
| >2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* | Back alignment and structure |
|---|
| >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} | Back alignment and structure |
|---|
| >2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* | Back alignment and structure |
|---|
| >4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* | Back alignment and structure |
|---|
| >2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* | Back alignment and structure |
|---|
| >2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A | Back alignment and structure |
|---|
| >1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
| >2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} | Back alignment and structure |
|---|
| >3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A | Back alignment and structure |
|---|
| >2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} | Back alignment and structure |
|---|
| >3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* | Back alignment and structure |
|---|
| >3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} | Back alignment and structure |
|---|
| >3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
| >3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
| >3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} | Back alignment and structure |
|---|
| >2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} | Back alignment and structure |
|---|
| >2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} | Back alignment and structure |
|---|
| >2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} | Back alignment and structure |
|---|
| >4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
| >2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A | Back alignment and structure |
|---|
| >1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A | Back alignment and structure |
|---|
| >3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} | Back alignment and structure |
|---|
| >2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01} | Back alignment and structure |
|---|
| >3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
| >2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A | Back alignment and structure |
|---|
| >1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A* | Back alignment and structure |
|---|
| >3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A | Back alignment and structure |
|---|
| >2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1 | Back alignment and structure |
|---|
| >2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP} | Back alignment and structure |
|---|
| >2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A | Back alignment and structure |
|---|
| >1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A* | Back alignment and structure |
|---|
| >1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A | Back alignment and structure |
|---|
| >4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A* | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A | Back alignment and structure |
|---|
| >1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A | Back alignment and structure |
|---|
| >1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A* | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A* | Back alignment and structure |
|---|
| >1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A | Back alignment and structure |
|---|
| >2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A* | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A | Back alignment and structure |
|---|
| >1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A | Back alignment and structure |
|---|
| >1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A | Back alignment and structure |
|---|
| >2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A | Back alignment and structure |
|---|
| >3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A | Back alignment and structure |
|---|
| >3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi} | Back alignment and structure |
|---|
| >3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A | Back alignment and structure |
|---|
| >2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A* | Back alignment and structure |
|---|
| >3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
| >4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 561 | ||||
| d2a5sa1 | 277 | c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate | 2e-14 | |
| d2a5sa1 | 277 | c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate | 9e-06 | |
| d1mqia_ | 260 | c.94.1.1 (A:) Glutamate receptor ligand binding co | 5e-11 | |
| d1mqia_ | 260 | c.94.1.1 (A:) Glutamate receptor ligand binding co | 5e-08 | |
| d1pb7a_ | 289 | c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni | 2e-08 | |
| d1pb7a_ | 289 | c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni | 3e-08 | |
| d2f34a1 | 246 | c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li | 2e-07 | |
| d2f34a1 | 246 | c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li | 5e-04 | |
| d1ii5a_ | 226 | c.94.1.1 (A:) Glutamate receptor ligand binding co | 7e-05 | |
| d1wdna_ | 223 | c.94.1.1 (A:) Glutamine-binding protein {Escherich | 4e-04 | |
| d1xt8a1 | 248 | c.94.1.1 (A:10-257) Putative amino-acid transporte | 0.003 |
| >d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: N-methyl-D-aspartate receptor subunit 1 species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]
Score = 71.6 bits (174), Expect = 2e-14
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
Query: 45 PTNEKKLRIGVPVKKGFSYFVNVTIDPKTQEPTSVTGFCIDVFKAVIQELPYAVAYDFVP 104
P E +R VP +K F N T + + GFCID+ K + + + + V
Sbjct: 21 PLTETCVRNTVPCRK-FVKINNSTNEGMNVKKCCK-GFCIDILKKLSRTVKFTYDLYLVT 78
Query: 105 YGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVSMIVPIKD 164
G+ + +N +I +V AVG +TI RS VDF++P+ E+G+S++V +
Sbjct: 79 NGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVS-RQ 137
Query: 165 SKKRNAWVFLQPLTWDLWVTSGCFF 189
+ F +P + G
Sbjct: 138 VTGLSDKKFQRPHDYSPPFRFGTVP 162
|
| >d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 | Back information, alignment and structure |
|---|
| >d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
| >d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
| >d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289 | Back information, alignment and structure |
|---|
| >d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289 | Back information, alignment and structure |
|---|
| >d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246 | Back information, alignment and structure |
|---|
| >d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246 | Back information, alignment and structure |
|---|
| >d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Length = 226 | Back information, alignment and structure |
|---|
| >d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Length = 223 | Back information, alignment and structure |
|---|
| >d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Length = 248 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| d2a5sa1 | 277 | N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt | 99.93 | |
| d1wdna_ | 223 | Glutamine-binding protein {Escherichia coli [TaxId | 99.93 | |
| d1pb7a_ | 289 | N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt | 99.93 | |
| d1ii5a_ | 226 | Glutamate receptor ligand binding core {Synechocys | 99.92 | |
| d1mqia_ | 260 | Glutamate receptor ligand binding core {Rat (Rattu | 99.91 | |
| d1xt8a1 | 248 | Putative amino-acid transporter CjaA {Campylobacte | 99.9 | |
| d1lsta_ | 238 | Lysine-,arginine-,ornithine-binding (LAO) protein | 99.87 | |
| d2f34a1 | 246 | Glutamate receptor ligand binding core {Rat (Rattu | 99.85 | |
| d2ozza1 | 228 | Hypothetical protein YhfZ {Shigella flexneri [TaxI | 98.06 | |
| d1al3a_ | 237 | Cofactor-binding fragment of LysR-type protein Cys | 96.81 | |
| d2fyia1 | 220 | LysR-type regulatory protein Cbl {Escherichia coli | 96.41 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 96.1 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 93.99 | |
| d2esna2 | 212 | Probable LysR-type transcriptional regulator PA047 | 93.32 | |
| d1xs5a_ | 240 | Putative lipoprotein (NlpA family) {Treponema pall | 92.96 | |
| d1us5a_ | 298 | Putative GluR0 ligand binding core {Thermus thermo | 92.89 | |
| d1i6aa_ | 212 | Hydrogen peroxide-inducible genes LysR-type activa | 92.62 | |
| d1utha_ | 219 | LysR-type regulatory protein DntR {Burkholderia sp | 91.38 | |
| d1ixca2 | 205 | LysR-type regulatory protein CbnR {Ralstonia eutro | 91.37 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 89.85 |
| >d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: N-methyl-D-aspartate receptor subunit 1 species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]
Probab=99.93 E-value=2.8e-26 Score=227.37 Aligned_cols=218 Identities=22% Similarity=0.357 Sum_probs=176.8
Q ss_pred eEEEehHHHHHHHHHHCCCceeEEEEecCCCCCCCCCCHHHHHHHHHcCcccEEEeceeeecCcceeeeccccccccceE
Q 037841 78 SVTGFCIDVFKAVIQELPYAVAYDFVPYGQPDGTSSGSYNDLIYQVFLGEFDAAVGDITILLNRSNYVDFTLPYTESGVS 157 (561)
Q Consensus 78 ~~~G~~idl~~~i~~~l~f~v~~~~v~~~~~~g~~ngs~~~li~~l~~g~~D~~vg~~~it~~R~~~vdfT~p~~~~~~~ 157 (561)
++.||++||+++++++||+++++..++.+..+...+++|++++.+|.+|++|++++++++|++|.+.++||.||+.++.+
T Consensus 52 ~~~G~~iDl~~~ia~~lg~~~e~~~v~~~~~g~~~~~~w~~~l~~l~~g~~Di~i~~~tit~eR~~~v~Fs~Py~~~~~~ 131 (277)
T d2a5sa1 52 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGIS 131 (277)
T ss_dssp EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEE
T ss_pred ceeeeHHHHHHHHHHHhCCCEEEEEccCCCcCccCCCCHHHHHhhhhcccEEEEEEccEeehhhhhhhcccCCceecceE
Confidence 68899999999999999998888777765544447899999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCcceeccccchhhHHHHHHHHHHHHHHHhhhhcccCCCCCCCccCccchhHHHHHHHhhhccccccccc
Q 037841 158 MIVPIKDSKKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWALEHRVNEDFRGPARHQVGTSFWFSFSTMVFSQRERVISN 237 (561)
Q Consensus 158 ivvp~~~~~~~~~~~fl~PF~~~vW~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~ 237 (561)
++++++.... +.+.++.
T Consensus 132 ilv~k~~~~~-~~~~~~~-------------------------------------------------------------- 148 (277)
T d2a5sa1 132 VMVSRQVTGL-SDKKFQR-------------------------------------------------------------- 148 (277)
T ss_dssp EEEETCCCST-TSHHHHS--------------------------------------------------------------
T ss_pred EEEecCcccC-ChhHhcC--------------------------------------------------------------
Confidence 9999765431 1112111
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhheeeeEeeccCCCcCCHHHHHhCCCeeEEEeCchHHHHHHhcCCCc----cceeecC
Q 037841 238 LARFVVIVWYFVVLVLTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDE----RKLVVYN 313 (561)
Q Consensus 238 ~~Ril~~~w~~~~lil~~~Yta~LtS~Lt~~~~~~~I~sl~dL~~~~~~vg~~~gs~~~~~l~~~~~~~----~~~~~~~ 313 (561)
..|+. .+.++|...++...+++++. ++. .....+.
T Consensus 149 ---------------------------------------~~~~~-~~~~~g~v~~~~~~~~~~~~-~~~~~~~~~~~~~~ 187 (277)
T d2a5sa1 149 ---------------------------------------PHDYS-PPFRFGTVPNGSTERNIRNN-YPYMHQYMTRFNQR 187 (277)
T ss_dssp ---------------------------------------GGGSS-SCCCEECCTTSHHHHHHHTT-CHHHHHHHGGGCCS
T ss_pred ---------------------------------------ccccc-hheeeeccchhhHHHHHHHh-hhhhcceEEEecCC
Confidence 12221 24478888899988888763 222 1234567
Q ss_pred ChHHHHHHhhccccCCceeEEeecchhHHHHHhcC--CcceEEeC--cccccCceEEEecCCCCChhhHHHHHhhccccc
Q 037841 314 SPEECHELFQKGSANGGIAAAFEEIPYGKLLVGQH--CYKYTMVE--PTFKTAGFGFAFPLHSPLVHDVSKAILSVTEGD 389 (561)
Q Consensus 314 s~~~~~~~l~~g~~~~gv~a~i~~~~~~~~~l~~~--~~~l~~v~--~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~G 389 (561)
+.++++++|.+|+ +||++.+.+.+.|+.+++ |+ +..++ ..+...+++++++||+||++.||++|.++.++|
T Consensus 188 ~~~~~~~~l~~G~----~Da~i~d~~~~~y~~~~~~~~~-l~~~~~~~~~~~~~ygia~~k~s~l~~~in~al~~l~~~G 262 (277)
T d2a5sa1 188 GVEDALVSLKTGK----LDAFIYDAAVLNYKAGRDEGCK-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDG 262 (277)
T ss_dssp SHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTCTTSC-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCC----cceecccHHHHHHHHhhCCCCc-EEEecCCCCcCcceEEEEEeCChHHHHHHHHHHHHHHHCC
Confidence 8899999999999 999999999999988876 65 54443 456778899999999999999999999999999
Q ss_pred hhHHHHHHHcccCCCCC
Q 037841 390 KMKEIEDAWFKKHSSCP 406 (561)
Q Consensus 390 ~~~~i~~kw~~~~~~c~ 406 (561)
.+++|.+||| .+.|.
T Consensus 263 ~~~~L~~KW~--~g~~~ 277 (277)
T d2a5sa1 263 EMEELETLWL--TGICH 277 (277)
T ss_dssp HHHHHHHHHT--CCCCC
T ss_pred HHHHHHhhhc--CCCCC
Confidence 9999999999 56663
|
| >d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} | Back information, alignment and structure |
|---|
| >d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
| >d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
| >d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
| >d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} | Back information, alignment and structure |
|---|
| >d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1utha_ c.94.1.1 (A:) LysR-type regulatory protein DntR {Burkholderia sp. [TaxId: 36773]} | Back information, alignment and structure |
|---|
| >d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|