Citrus Sinensis ID: 037845

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPTV
cccccccccEEEEcccccEEEccccccccccccccccccccccccccccccccccccHHHHHccccEEEcccccccccccHHHHHHHHHHHcccccccccccccEEEEccccccHHHHHHHHHHHHccccccccHHEHHHHHHHHcccccEEEEEEcccccEEEccccccccccccEEEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHccccEEEEccHHHHHHHHccccccEEEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHccEEEccccccccccccc
cccccccccEEEEEcccEEEEEEcccccccEEEEccEEEEccccccccccccccEEcHHHHHcHHHEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHcccHHHHHHHHccEEEEcHHHccccHHHc
madaediqplvcdngtgmvkagfagddapravfpsivgrprhtgvmvgmgqkdayvgdeaqskrgiltlkypiehgivsnwddmEKIWHHTFYNelrvapeehpvllteaplnpkanrEKMTQIMFETFNVPAMYVAIQAVLSLYASGrttgivldsgdgvshtvpiyegyalpHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETakssssveknyelpdgqiitigaerfrcpevlfqpsligmeaagihettynsimkcdvdirKDLYGNIvlsggstmfpvlptv
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILtergymftttaeREIVRDMKEKLAYVALDYEQELEtakssssveknyelPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIvlsggstmfpvlptv
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPTV
*********LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA*********KMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYE***************YELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP*****
****EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG*****GQ**AYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYE*****************LPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLP**
MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE**********EKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPTV
*****DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
P53492377 Actin-7 OS=Arabidopsis th yes no 0.984 0.819 0.983 0.0
A3C6D7377 Actin-2 OS=Oryza sativa s yes no 0.984 0.819 0.967 1e-179
P0C539377 Actin-2 OS=Oryza sativa s N/A no 0.984 0.819 0.967 1e-179
P30173377 Actin-101 OS=Solanum tube N/A no 0.984 0.819 0.964 1e-179
P30164376 Actin-1 OS=Pisum sativum N/A no 0.980 0.819 0.970 1e-179
O81221377 Actin OS=Gossypium hirsut N/A no 0.984 0.819 0.957 1e-179
Q10DV7377 Actin-1 OS=Oryza sativa s yes no 0.984 0.819 0.961 1e-179
A2XLF2377 Actin-1 OS=Oryza sativa s N/A no 0.984 0.819 0.961 1e-179
P30165376 Actin-2 OS=Pisum sativum N/A no 0.980 0.819 0.967 1e-179
P30171377 Actin-97 OS=Solanum tuber N/A no 0.984 0.819 0.954 1e-179
>sp|P53492|ACT7_ARATH Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1 Back     alignment and function desciption
 Score =  636 bits (1641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/309 (98%), Positives = 307/309 (99%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 240
           DLAGRDLTD+LMKILTERGYMFTTTAEREIVRD+KEKLAYVALDYEQELETAKSSSSVEK
Sbjct: 181 DLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 NYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           NYELPDGQ+ITIGAERFRCPEVLFQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFP 309
           LSGGSTMFP
Sbjct: 301 LSGGSTMFP 309
Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. Essential component of cell cytoskeleton; plays an important role in cytoplasmic streaming, cell shape determination, cell division, organelle movement and extension growth. This is considered as one of the vegetative actins which is involved in the regulation of hormone-induced plant cell proliferation and callus formation.
Arabidopsis thaliana (taxid: 3702)
>sp|A3C6D7|ACT2_ORYSJ Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1 Back     alignment and function description
>sp|P0C539|ACT2_ORYSI Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1 Back     alignment and function description
>sp|P30173|ACT13_SOLTU Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1 Back     alignment and function description
>sp|P30164|ACT1_PEA Actin-1 OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|O81221|ACT_GOSHI Actin OS=Gossypium hirsutum PE=3 SV=1 Back     alignment and function description
>sp|Q10DV7|ACT1_ORYSJ Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1 Back     alignment and function description
>sp|A2XLF2|ACT1_ORYSI Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1 Back     alignment and function description
>sp|P30165|ACT2_PEA Actin-2 OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|P30171|ACT11_SOLTU Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
386278562356 actin7a, partial [Vernicia fordii] 0.984 0.867 0.996 0.0
317383896377 actin [Litchi chinensis] 0.984 0.819 0.996 0.0
224055984377 actin 1 [Populus trichocarpa] gi|2555623 0.984 0.819 0.996 0.0
449533733374 PREDICTED: actin-7-like, partial [Cucumi 0.984 0.826 0.993 0.0
319769153377 actin 7b [Hevea brasiliensis] 0.984 0.819 0.996 0.0
212960264377 actin [Betula luminifera] 0.984 0.819 0.996 0.0
449459238377 PREDICTED: actin-7-like [Cucumis sativus 0.984 0.819 0.993 0.0
38259662377 actin [Ricinus communis] 0.984 0.819 0.993 0.0
32186906377 actin [Gossypium hirsutum] gi|219563046| 0.984 0.819 0.993 0.0
224116600377 actin 9 [Populus trichocarpa] gi|1184812 0.984 0.819 0.993 0.0
>gi|386278562|gb|AFJ04513.1| actin7a, partial [Vernicia fordii] Back     alignment and taxonomy information
 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/309 (99%), Positives = 309/309 (100%)

Query: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
           MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct: 1   MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
           QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct: 61  QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
           MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct: 121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query: 181 DLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 240
           DLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK
Sbjct: 181 DLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 240

Query: 241 NYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
           NYELPDGQ+ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct: 241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query: 301 LSGGSTMFP 309
           LSGGSTMFP
Sbjct: 301 LSGGSTMFP 309

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|317383896|gb|ADV17460.1| actin [Litchi chinensis] Back     alignment and taxonomy information
>gi|224055984|ref|XP_002298710.1| actin 1 [Populus trichocarpa] gi|255562375|ref|XP_002522194.1| actin, putative [Ricinus communis] gi|255568080|ref|XP_002525016.1| actin, putative [Ricinus communis] gi|222845968|gb|EEE83515.1| actin 1 [Populus trichocarpa] gi|223535678|gb|EEF37343.1| actin, putative [Ricinus communis] gi|223538565|gb|EEF40169.1| actin, putative [Ricinus communis] gi|315248859|gb|ADT91622.1| actin7a [Hevea brasiliensis] gi|325053295|dbj|BAJ79029.1| actin [Nitraria sibirica] gi|333463955|gb|AEF33711.1| actin [Hevea brasiliensis] gi|358635038|dbj|BAL22349.1| actin [Nitraria sibirica] gi|388252793|gb|AFK24460.1| actin 2 [Ziziphus jujuba] gi|390988087|gb|AFM36693.1| actin 1 [Ficus microcarpa] gi|452029751|gb|AGF91932.1| actin [Euphorbia lathyris] Back     alignment and taxonomy information
>gi|449533733|ref|XP_004173826.1| PREDICTED: actin-7-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|319769153|gb|ADV72541.1| actin 7b [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|212960264|gb|ACJ38662.1| actin [Betula luminifera] Back     alignment and taxonomy information
>gi|449459238|ref|XP_004147353.1| PREDICTED: actin-7-like [Cucumis sativus] gi|449461823|ref|XP_004148641.1| PREDICTED: actin-7-like [Cucumis sativus] gi|449532903|ref|XP_004173417.1| PREDICTED: actin-7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|38259662|gb|AAR15174.1| actin [Ricinus communis] Back     alignment and taxonomy information
>gi|32186906|gb|AAP73457.1| actin [Gossypium hirsutum] gi|219563046|gb|ACL27885.1| actin [Helianthus annuus] gi|219563048|gb|ACL27886.1| actin [Helianthus annuus] gi|306922316|dbj|BAJ17659.1| actin [Gynura bicolor] Back     alignment and taxonomy information
>gi|224116600|ref|XP_002331880.1| actin 9 [Populus trichocarpa] gi|118481204|gb|ABK92553.1| unknown [Populus trichocarpa] gi|118482913|gb|ABK93370.1| unknown [Populus trichocarpa] gi|133925835|gb|ABO43670.1| actin [Populus trichocarpa] gi|222874629|gb|EEF11760.1| actin 9 [Populus trichocarpa] gi|429326374|gb|AFZ78527.1| actin [Populus tomentosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TAIR|locus:2178128377 ACT7 "actin 7" [Arabidopsis th 0.984 0.819 0.983 3.9e-163
TAIR|locus:2040656377 ACT1 "AT2G37620" [Arabidopsis 0.984 0.819 0.951 7.5e-160
TAIR|locus:2084410377 ACT3 "AT3G53750" [Arabidopsis 0.984 0.819 0.951 7.5e-160
TAIR|locus:2099302377 ACT11 "AT3G12110" [Arabidopsis 0.984 0.819 0.951 2.5e-159
TAIR|locus:2075160377 ACT12 "AT3G46520" [Arabidopsis 0.980 0.816 0.948 6.1e-158
TAIR|locus:2148298377 ACT4 "actin 4" [Arabidopsis th 0.980 0.816 0.944 1.6e-157
TAIR|locus:2028416377 ACT8 "AT1G49240" [Arabidopsis 0.980 0.816 0.925 1.4e-156
TAIR|locus:2093954377 ACT2 "AT3G18780" [Arabidopsis 0.980 0.816 0.922 3.8e-156
DICTYBASE|DDB_G0289663376 act5 "actin" [Dictyostelium di 0.977 0.816 0.902 1.8e-151
DICTYBASE|DDB_G0289553376 act1 "actin" [Dictyostelium di 0.977 0.816 0.902 1.8e-151
TAIR|locus:2178128 ACT7 "actin 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1588 (564.1 bits), Expect = 3.9e-163, P = 3.9e-163
 Identities = 304/309 (98%), Positives = 307/309 (99%)

Query:     1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60
             MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA
Sbjct:     1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA 60

Query:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120
             QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
Sbjct:    61 QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 120

Query:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180
             MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL
Sbjct:   121 MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 180

Query:   181 DLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEK 240
             DLAGRDLTD+LMKILTERGYMFTTTAEREIVRD+KEKLAYVALDYEQELETAKSSSSVEK
Sbjct:   181 DLAGRDLTDSLMKILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEK 240

Query:   241 NYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIV 300
             NYELPDGQ+ITIGAERFRCPEVLFQPSLIGMEA GIHETTYNSIMKCDVDIRKDLYGNIV
Sbjct:   241 NYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIV 300

Query:   301 LSGGSTMFP 309
             LSGGSTMFP
Sbjct:   301 LSGGSTMFP 309
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0007010 "cytoskeleton organization" evidence=RCA;TAS
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0009845 "seed germination" evidence=IMP
GO:0048364 "root development" evidence=IMP
GO:0005739 "mitochondrion" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0010053 "root epidermal cell differentiation" evidence=IMP
GO:0048767 "root hair elongation" evidence=RCA;IMP
GO:0051301 "cell division" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0032880 "regulation of protein localization" evidence=RCA
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005856 "cytoskeleton" evidence=ISS
GO:0009416 "response to light stimulus" evidence=IEP
GO:0009611 "response to wounding" evidence=IEP
TAIR|locus:2040656 ACT1 "AT2G37620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084410 ACT3 "AT3G53750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099302 ACT11 "AT3G12110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075160 ACT12 "AT3G46520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148298 ACT4 "actin 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028416 ACT8 "AT1G49240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093954 ACT2 "AT3G18780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289663 act5 "actin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289553 act1 "actin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P02582ACT1_MAIZENo assigned EC number0.90290.97770.8186N/Ano
P02580ACT3_SOYBNNo assigned EC number0.92850.97770.8164nono
P0CJ47ACT3_ARATHNo assigned EC number0.95140.98400.8196yesno
P0CJ46ACT1_ARATHNo assigned EC number0.95140.98400.8196yesno
P17126ACT_HYDVUNo assigned EC number0.89960.98080.8191N/Ano
A3C6D7ACT2_ORYSJNo assigned EC number0.96760.98400.8196yesno
P07829ACT3_DICDINo assigned EC number0.88590.97770.8164yesno
Q964E1ACTC_BIOOBNo assigned EC number0.90490.97130.8111N/Ano
Q964E0ACTC_BIOTENo assigned EC number0.89830.97130.8111N/Ano
P30168ACT6_SOLTUNo assigned EC number0.92880.98400.8196N/Ano
O81221ACT_GOSHINo assigned EC number0.95790.98400.8196N/Ano
P30167ACT3_SOLTUNo assigned EC number0.95140.98400.8196N/Ano
P30164ACT1_PEANo assigned EC number0.97080.98080.8191N/Ano
P30165ACT2_PEANo assigned EC number0.96760.98080.8191N/Ano
P41113ACT3_PODCANo assigned EC number0.89320.98080.8191N/Ano
P46258ACT3_PEANo assigned EC number0.94820.98400.8196N/Ano
P81228ACT5_SOLTUNo assigned EC number0.95840.92030.8601N/Ano
Q96483ACT2_SOLLCNo assigned EC number0.97230.92030.8601N/Ano
Q05214ACT1_TOBACNo assigned EC number0.95140.98400.8196N/Ano
P02578ACT1_ACACANo assigned EC number0.89540.97450.816N/Ano
P23343ACT1_DAUCANo assigned EC number0.93200.98080.8105N/Ano
P12716ACTC_PISOCNo assigned EC number0.90490.97130.8111N/Ano
P0C539ACT2_ORYSINo assigned EC number0.96760.98400.8196N/Ano
P53504ACT1_SORBINo assigned EC number0.95790.98400.8196N/Ano
Q10DV7ACT1_ORYSJNo assigned EC number0.96110.98400.8196yesno
O65316ACT_MESVINo assigned EC number0.90290.98400.8196N/Ano
P30172ACT12_SOLTUNo assigned EC number0.96530.92030.8095N/Ano
Q553U6ACT22_DICDINo assigned EC number0.90220.97770.8164yesno
Q96293ACT8_ARATHNo assigned EC number0.92530.98080.8169nono
Q96292ACT2_ARATHNo assigned EC number0.92200.98080.8169nono
P93372ACT4_TOBACNo assigned EC number0.96190.92030.8601N/Ano
Q964E3ACTC_BIOALNo assigned EC number0.89500.97130.8111N/Ano
O65315ACT_COLSCNo assigned EC number0.91260.98400.8196N/Ano
P53498ACT_CHLRENo assigned EC number0.88990.98400.8196N/Ano
P53494ACT4_ARATHNo assigned EC number0.94480.98080.8169nono
P53497ACT12_ARATHNo assigned EC number0.94800.98080.8169yesno
P53496ACT11_ARATHNo assigned EC number0.95140.98400.8196yesno
P30171ACT11_SOLTUNo assigned EC number0.95460.98400.8196N/Ano
P30173ACT13_SOLTUNo assigned EC number0.96440.98400.8196N/Ano
P53492ACT7_ARATHNo assigned EC number0.98380.98400.8196yesno
Q54GX7ACT10_DICDINo assigned EC number0.89900.97770.8164yesno
Q10AZ4ACT3_ORYSJNo assigned EC number0.95790.98400.8196yesno
A2XNS1ACT3_ORYSINo assigned EC number0.95790.98400.8196N/Ano
P93376ACT6_TOBACNo assigned EC number0.97570.92030.8601N/Ano
P0C542ACT7_ORYSINo assigned EC number0.94090.97130.8111N/Ano
P0C540ACT7_ORYSJNo assigned EC number0.94090.97130.8111nono
A2XLF2ACT1_ORYSINo assigned EC number0.96110.98400.8196N/Ano
P07830ACT1_DICDINo assigned EC number0.90220.97770.8164yesno
P02576ACTA_PHYPONo assigned EC number0.90550.97770.8164N/Ano
P53461ACTC_HALRONo assigned EC number0.89830.97130.8111N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 0.0
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 0.0
smart00268373 smart00268, ACTIN, Actin 0.0
pfam00022367 pfam00022, Actin, Actin 0.0
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-135
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 1e-130
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 1e-119
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 9e-95
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 4e-17
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information 
 Score =  592 bits (1528), Expect = 0.0
 Identities = 276/305 (90%), Positives = 294/305 (96%)

Query: 5   EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
           ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQSKR
Sbjct: 4   EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR 63

Query: 65  GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
           GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64  GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123

Query: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 184
           MFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDLAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG 183

Query: 185 RDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYEL 244
           RDLTD +MKILTERGY FTTTAEREIVRD+KEKLAYVALD+E E++TA SSS++EK+YEL
Sbjct: 184 RDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYEL 243

Query: 245 PDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG 304
           PDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG
Sbjct: 244 PDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGG 303

Query: 305 STMFP 309
           +TMFP
Sbjct: 304 TTMFP 308

Length = 376
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
PTZ00281376 actin; Provisional 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681 645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
PRK13929335 rod-share determining protein MreBH; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 100.0
KOG0797 618 consensus Actin-related protein [Cytoskeleton] 100.0
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.97
PRK13928336 rod shape-determining protein Mbl; Provisional 99.97
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.93
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.75
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.67
CHL00094 621 dnaK heat shock protein 70 99.55
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.54
PLN03184 673 chloroplast Hsp70; Provisional 99.53
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.52
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.5
PRK01433 595 hscA chaperone protein HscA; Provisional 99.5
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.5
PRK05183 616 hscA chaperone protein HscA; Provisional 99.49
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.48
PRK13411 653 molecular chaperone DnaK; Provisional 99.48
PRK13410 668 molecular chaperone DnaK; Provisional 99.48
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.45
PRK11678450 putative chaperone; Provisional 99.42
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.35
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 99.3
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 99.19
PRK09472420 ftsA cell division protein FtsA; Reviewed 99.16
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 99.16
PRK13917344 plasmid segregation protein ParM; Provisional 98.99
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 98.97
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 98.92
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 98.77
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 98.74
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 98.53
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 98.35
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 98.32
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 98.2
PRK10719 475 eutA reactivating factor for ethanolamine ammonia 97.99
COG4820277 EutJ Ethanolamine utilization protein, possible ch 97.95
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 97.79
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 97.7
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 97.17
PF06277 473 EutA: Ethanolamine utilisation protein EutA; Inter 97.1
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 96.24
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 96.06
COG0248 492 GppA Exopolyphosphatase [Nucleotide transport and 95.19
PRK10854 513 exopolyphosphatase; Provisional 95.04
COG4819 473 EutA Ethanolamine utilization protein, possible ch 94.5
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 93.61
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 93.1
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 92.38
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 92.31
PRK13321256 pantothenate kinase; Reviewed 91.56
TIGR00671243 baf pantothenate kinase, type III. This model desc 91.01
PRK13324258 pantothenate kinase; Reviewed 90.69
PF03309206 Pan_kinase: Type III pantothenate kinase; InterPro 89.72
COG1521251 Pantothenate kinase type III (Bvg accessory factor 89.43
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 88.3
PRK13318258 pantothenate kinase; Reviewed 87.22
COG1548330 Predicted transcriptional regulator/sugar kinase [ 86.97
PRK13326262 pantothenate kinase; Reviewed 86.8
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 86.48
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 85.66
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 83.39
PF08735254 DUF1786: Putative pyruvate format-lyase activating 82.01
>PTZ00281 actin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.4e-71  Score=503.54  Aligned_cols=312  Identities=89%  Similarity=1.378  Sum_probs=290.2

Q ss_pred             CCCCCCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCCCccccCCCcccccccccccccCCceeeCcccCCccCCH
Q 037845            2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW   81 (314)
Q Consensus         2 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~   81 (314)
                      |++|+.++||||+||+++|+|||||+.|++++||+++++++...+.+.++...++|+++...+..+.+++|+++|.|.||
T Consensus         1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw   80 (376)
T PTZ00281          1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW   80 (376)
T ss_pred             CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence            67899999999999999999999999999999999999877544444445677899998877788899999999999999


Q ss_pred             HHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhHhhhhcCCCeEEEEecCCCc
Q 037845           82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV  161 (314)
Q Consensus        82 ~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~a~~~~g~~t~lVVDiG~~~  161 (314)
                      |.++.+|+++|.+.|+++|+++|+++++|+++++..|++++|++||+|++|++++.+++++++|++|++||||||+|++.
T Consensus        81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~  160 (376)
T PTZ00281         81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV  160 (376)
T ss_pred             HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHHHHhhcCCCCCcce
Q 037845          162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKN  241 (314)
Q Consensus       162 t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
                      |+|+||+||+++.++.+++++||++++++|.++|..++.++....+.+.++++|+++||++.+++.+.+...........
T Consensus       161 t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~  240 (376)
T PTZ00281        161 SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKS  240 (376)
T ss_pred             EEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence            99999999999999999999999999999999999888777666778899999999999999988777655444455678


Q ss_pred             EECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCCCCCCC
Q 037845          242 YELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPVLPT  313 (314)
Q Consensus       242 ~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~e  313 (314)
                      |++|||+.+.++.+|+.+||+||+|+..+.+..+|+++|.++|.+||+|.|+.|++||+|+||+|++|||.+
T Consensus       241 y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~  312 (376)
T PTZ00281        241 YELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIAD  312 (376)
T ss_pred             EECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999975

>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>TIGR00671 baf pantothenate kinase, type III Back     alignment and domain information
>PRK13324 pantothenate kinase; Reviewed Back     alignment and domain information
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway Back     alignment and domain information
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PRK13318 pantothenate kinase; Reviewed Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13326 pantothenate kinase; Reviewed Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 1e-170
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 1e-169
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 1e-168
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 1e-167
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 1e-167
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 1e-167
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 1e-166
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 1e-166
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 1e-165
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 1e-165
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 1e-165
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 1e-165
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 1e-165
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 1e-165
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 1e-165
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 1e-165
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 1e-165
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 1e-165
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 1e-165
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 1e-165
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 1e-164
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 1e-164
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 1e-164
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 1e-164
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 1e-164
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 1e-164
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 1e-164
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 1e-163
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 1e-163
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 1e-163
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 1e-162
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 1e-162
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 1e-162
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 1e-162
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 1e-158
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 1e-158
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 1e-158
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 1e-157
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 1e-152
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 9e-93
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 2e-92
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 1e-51
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 3e-51
3qb0_A 498 Crystal Structure Of Actin-Related Protein Arp4 Fro 6e-18
4i6m_A 477 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 4e-14
4i6m_B 439 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 1e-04
4fo0_A 593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 8e-04
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  595 bits (1533), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 278/307 (90%), Positives = 295/307 (96%)
Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD+YVGDEAQS
Sbjct: 1   DGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 60
Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 180
Query: 183 AGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNY 242
           AGRDLTD +MKILTERGY FTTTAEREIVRD+KEKLAYVALD+EQE+ TA SSS++EK+Y
Sbjct: 181 AGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAASSSALEKSY 240
Query: 243 ELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLS 300
Query: 303 GGSTMFP 309
           GG+TMFP
Sbjct: 301 GGTTMFP 307
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 Back     alignment and structure
>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439 Back     alignment and structure
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 0.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 0.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 0.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 0.0
3qb0_A 498 Actin-related protein 4; actin fold, ATP binding, 1e-157
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 4e-37
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
 Score =  607 bits (1566), Expect = 0.0
 Identities = 268/307 (87%), Positives = 288/307 (93%)

Query: 3   DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS 62
           D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQS
Sbjct: 1   DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60

Query: 63  KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
           KRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT
Sbjct: 61  KRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMT 120

Query: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182
           QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDL
Sbjct: 121 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL 180

Query: 183 AGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNY 242
           AGRDLTD LMKILTERGY F TTAEREIVRD+KEKL YVALD+E E+ TA SSSS+EK+Y
Sbjct: 181 AGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 240

Query: 243 ELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302
           ELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 300

Query: 303 GGSTMFP 309
           GG+TM+P
Sbjct: 301 GGTTMYP 307
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A 655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 100.0
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.83
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.83
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.77
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.77
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.71
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.64
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.61
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.61
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.6
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.58
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.57
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.46
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.36
3js6_A355 Uncharacterized PARM protein; partition, segregati 99.29
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 99.17
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 99.13
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.52
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 98.45
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 96.91
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 96.45
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 96.13
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 95.98
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 95.78
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 95.71
3djc_A266 Type III pantothenate kinase; structural genomics, 94.49
3aap_A353 Ectonucleoside triphosphate diphosphohydrolase I; 94.35
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 94.1
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 92.89
3bex_A249 Type III pantothenate kinase; actin-like fold, ATP 91.41
3zx3_A 452 Ectonucleoside triphosphate diphosphohydrolase 1; 90.34
2gup_A292 ROK family protein; sugar kinase, streptococcus pn 87.53
1zbs_A291 Hypothetical protein PG1100; alpha-beta protein., 86.04
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=2.5e-68  Score=490.67  Aligned_cols=305  Identities=39%  Similarity=0.686  Sum_probs=262.7

Q ss_pred             CCCcEEEeCCCccEEEEEeCCCCCCccCCceeeecCCC----------------------CccccCCCcccccccccccc
Q 037845            6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT----------------------GVMVGMGQKDAYVGDEAQSK   63 (314)
Q Consensus         6 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~~~~~~~~----------------------~~~~~~~~~~~~vg~~~~~~   63 (314)
                      +.++||||+||+++|+||||++.|++++||+++++++.                      ..+.+.++.+.+||++|...
T Consensus         4 ~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~~   83 (427)
T 3dwl_A            4 FNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKK   83 (427)
T ss_dssp             CCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHHT
T ss_pred             CCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhhC
Confidence            57899999999999999999999999999999998754                      11223455688999999877


Q ss_pred             cC-CceeeCcccCCccCCHHHHHHHHHHhcccccccCCCCCceEEeeCCCCChHHHHHHHHHHhhhCCCCeeeechhhhH
Q 037845           64 RG-ILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL  142 (314)
Q Consensus        64 ~~-~~~~~~p~~~g~i~~~~~le~~l~~~~~~~l~~~~~~~~vll~~~~~~~~~~~~~~~~~lfe~~~~~~v~~~~~~~~  142 (314)
                      +. .+.+++|+++|.|.|||.+|++|+++|++.|++++.++|++|++|+++++..|++++|++||+|++|+++++.++++
T Consensus        84 ~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vl  163 (427)
T 3dwl_A           84 ASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVL  163 (427)
T ss_dssp             HHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHH
T ss_pred             cccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHH
Confidence            64 67899999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcC--------CCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 037845          143 SLYASG--------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDM  214 (314)
Q Consensus       143 a~~~~g--------~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~i  214 (314)
                      |+|++|        .+||||||+|++.|+|+||++|+++.++++++++||++++++|.++|.+++..   ..+.++++++
T Consensus       164 a~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~~~I  240 (427)
T 3dwl_A          164 ALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTAERI  240 (427)
T ss_dssp             HHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHHHHH
T ss_pred             HHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHHHHH
Confidence            999998        68999999999999999999999999999999999999999999999887765   4467899999


Q ss_pred             HhhccccccCHHHHHHhhcCCCCCcceEEC--CCCC--eEeeCCeeeecccccCCCCcCCCC-CCCHHHHHHHHHHhCCh
Q 037845          215 KEKLAYVALDYEQELETAKSSSSVEKNYEL--PDGQ--IITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDV  289 (314)
Q Consensus       215 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--p~~~--~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~  289 (314)
                      |+++||++.+++++.+.........+.|++  |+|+  .+.++.+||.+||+||+|+..+.+ ..+|+++|.++|++||+
T Consensus       241 Ke~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~  320 (427)
T 3dwl_A          241 KEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPI  320 (427)
T ss_dssp             HHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCH
T ss_pred             HHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCH
Confidence            999999999998887765443334567777  8887  788999999999999999999888 48999999999999999


Q ss_pred             hHHHhhhcCeEEecCCCCCCCCCC
Q 037845          290 DIRKDLYGNIVLSGGSTMFPVLPT  313 (314)
Q Consensus       290 d~r~~l~~nIvl~GG~s~i~G~~e  313 (314)
                      |+|+.|++||+||||+|++|||.+
T Consensus       321 dlr~~L~~nIvLtGG~sl~~G~~~  344 (427)
T 3dwl_A          321 DVRKGLYKNIVLSGGSTLFKNFGN  344 (427)
T ss_dssp             HHHHHHHHCEEEESGGGCSTTTTH
T ss_pred             HHHHHHhCCEEEEccCcCCCChHH
Confidence            999999999999999999999985
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A* Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Back     alignment and structure
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A* Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 3e-77
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9e-77
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 2e-73
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 4e-71
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 1e-64
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  233 bits (595), Expect = 3e-77
 Identities = 135/161 (83%), Positives = 148/161 (91%)

Query: 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAER 208
           RTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGY F TTAER
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60

Query: 209 EIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSL 268
           EIVRD+KEKL YVALD+E E+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS 
Sbjct: 61  EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 120

Query: 269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309
           IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+P
Sbjct: 121 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYP 161
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.98
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.15
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 98.75
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.61
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 98.15
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.0
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 97.88
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 97.74
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 97.71
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.7
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 95.36
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 92.21
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 90.1
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 89.87
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 89.79
d2aa4a1119 N-acetylmannosamine kinase NanK {Escherichia coli 85.67
d1zc6a1114 Probable N-acetylglucosamine kinase CV2896 {Chromo 80.45
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-37  Score=258.24  Aligned_cols=165  Identities=82%  Similarity=1.285  Sum_probs=156.7

Q ss_pred             CCeEEEEecCCCceEEEEeeCCeeccccceEecchHHHHHHHHHHHHHhcCCccccccHHHHHHHHHhhccccccCHHHH
Q 037845          149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE  228 (314)
Q Consensus       149 ~~t~lVVDiG~~~t~i~pV~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~  228 (314)
                      ++||||||+|++.|+|+||+||++++++.+++++||++++++|.++|.+++.+.....+.+.++++|+.+|+++.++..+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            58999999999999999999999999999999999999999999999999888777778899999999999999999888


Q ss_pred             HHhhcCCCCCcceEECCCCCeEeeCCeeeecccccCCCCcCCCCCCCHHHHHHHHHHhCChhHHHhhhcCeEEecCCCCC
Q 037845          229 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF  308 (314)
Q Consensus       229 ~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i  308 (314)
                      .............|.+|||+.+.++.+|+.+||.||+|...+....+|+++|.++|.+||+|.|+.|++||+||||+|++
T Consensus        81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~  160 (225)
T d2fxua2          81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY  160 (225)
T ss_dssp             HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred             HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence            88777777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 037845          309 PVLPT  313 (314)
Q Consensus       309 ~G~~e  313 (314)
                      |||.+
T Consensus       161 ~G~~~  165 (225)
T d2fxua2         161 PGIAD  165 (225)
T ss_dssp             TTHHH
T ss_pred             CchhH
Confidence            99964
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure