Citrus Sinensis ID: 037870
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 511 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LEV7 | 503 | Probable folate-biopterin | yes | no | 0.951 | 0.966 | 0.653 | 0.0 | |
| Q9SQN2 | 497 | Probable folate-biopterin | no | no | 0.933 | 0.959 | 0.475 | 1e-135 | |
| Q5FV41 | 499 | Probable folate-biopterin | no | no | 0.925 | 0.947 | 0.467 | 1e-131 | |
| F4KIL8 | 492 | Probable folate-biopterin | no | no | 0.908 | 0.943 | 0.442 | 1e-116 | |
| Q55721 | 494 | Folate-biopterin transpor | N/A | no | 0.722 | 0.746 | 0.295 | 3e-39 | |
| Q9SKZ5 | 560 | Folate-biopterin transpor | no | no | 0.743 | 0.678 | 0.283 | 6e-39 | |
| Q8RWQ5 | 491 | Probable folate-biopterin | no | no | 0.821 | 0.855 | 0.255 | 2e-38 | |
| F4I5Q2 | 542 | Probable folate-biopterin | no | no | 0.788 | 0.743 | 0.251 | 2e-22 | |
| Q9XIQ7 | 442 | Probable folate-biopterin | no | no | 0.718 | 0.830 | 0.237 | 2e-17 | |
| O22780 | 538 | Probable folate-biopterin | no | no | 0.774 | 0.736 | 0.242 | 5e-17 |
| >sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/490 (65%), Positives = 396/490 (80%), Gaps = 4/490 (0%)
Query: 1 MESLENQELIVEKPPSISSLKQNDH-DLQVTAKRTKLLSVFLEPFQWLQMLSSQLNSTFI 59
ME+LE ++ + P + + +DH +++ A+R ++SV ++PFQWLQMLSS+LN +F+
Sbjct: 1 METLETEKFFSDDKPLLKPI--SDHSEIKTKARRNAVVSVLIQPFQWLQMLSSRLNLSFV 58
Query: 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDA 119
G++LVYG++QGFSGS KVVTDYYWKDVQ+VQPSVVQ+Y+GL Y+P VM+PIWGLFTD
Sbjct: 59 LGVVLVYGVNQGFSGSIFKVVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDV 118
Query: 120 FPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIA 179
FPIKGY R+PYFV++GV G VSA+ +LGKLP A+AL+C +G+SA +AIADVVIDACIA
Sbjct: 119 FPIKGYKRKPYFVVSGVLGLVSAIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIA 178
Query: 180 RNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGF 239
NSI IR+LAPD+QSLC CS+AG+L+GYA SG V+ LGPQGALGVLA P +++LGF
Sbjct: 179 TNSINIRSLAPDIQSLCMVCSSAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGF 238
Query: 240 VIYETRSANIRSEK-KKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQF 298
IYE RS+ + ++K KK + + KGM K++K P+VWKPSLYM++SLA++ISTHEG F
Sbjct: 239 FIYEKRSSTVPTQKTKKDTDGLGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHF 298
Query: 299 YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGM 358
YWYTDP AGPAFSQEFVG+IYA+GA+ASM GVLIYHK LK Y RN+LF AQLLY SGM
Sbjct: 299 YWYTDPTAGPAFSQEFVGIIYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGM 358
Query: 359 LDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM 418
LDL+FI RWNL LGIPDS FVITE+ + +ISKIRWIPM+VLSTRLCP+GIEGTFFA LM
Sbjct: 359 LDLVFIKRWNLTLGIPDSLFVITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLM 418
Query: 419 CIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDE 478
CIDS G L SKWGGG VLH VTR DF NLWLVILIRN+LRL T+ +FLVP +D D+
Sbjct: 419 CIDSFGQLASKWGGGFVLHAFGVTRHDFGNLWLVILIRNILRLVTVCFVFLVPDSDHLDD 478
Query: 479 LIPVDLLRKN 488
L+P D+L K
Sbjct: 479 LVPSDVLPKK 488
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SQN2|FBT3_ARATH Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana GN=At1g79710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1238), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/484 (47%), Positives = 336/484 (69%), Gaps = 7/484 (1%)
Query: 21 KQNDHDLQVTAKRTKLLSVFLE-PFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKV 79
++N D K+ +L + L+ P +WL+ML +L+ +F FG+I+VYG+SQG SKV
Sbjct: 15 RRNHQD----KKKEGVLDLVLKRPLRWLRMLIEELHWSFFFGVIIVYGVSQGLGKGLSKV 70
Query: 80 VTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGC 139
T YY+KD QK+QPS QIY+GL +P ++KP+WGL TD P+ GY RRPYF++AG
Sbjct: 71 STQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRPYFILAGFLAM 130
Query: 140 VSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFC 199
+S ++ L L +A+AL+C V SAG+AIADV IDAC+ + SI LA DMQSLCG C
Sbjct: 131 ISMMVLWLHTNLHLALALSCLVAGSAGVAIADVTIDACVTQCSISHPTLAADMQSLCGLC 190
Query: 200 SAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMEN 259
S+ GSL+G+++SG V+ +G +G G+L + LL+V+G V+ E+ S ++ +K V +
Sbjct: 191 SSIGSLVGFSLSGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESPSRSL--GRKHVNDK 248
Query: 260 VEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIY 319
++K+ + +VW+P L+M LS AVS+ HEG FYWYTD K GP+FS+E VG I
Sbjct: 249 FLDAGSAIWKTFQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFSKEAVGSIM 308
Query: 320 ALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFV 379
+ GA+ S++G+L+Y LK++P RN++F A L +SG LDLI +LR NL LG+PD FF+
Sbjct: 309 SFGAIGSLVGILLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRINLKLGLPDYFFI 368
Query: 380 ITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLL 439
+ ++ VSH+IS+I+W+P++VLS++LCP G+EGTFFALLM I+ IG L S WGGG++LH L
Sbjct: 369 VVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWGGGVLLHAL 428
Query: 440 HVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDELIPVDLLRKNSDTSTDDEGLQ 499
VTRT F NLWLVI+IR++LR+ +GL+FL+P D + ++P ++L D E ++
Sbjct: 429 KVTRTQFDNLWLVIVIRSLLRVIPIGLVFLIPNVDSNSTILPAEMLTSRISEGVDTEKIE 488
Query: 500 LVTI 503
+ +
Sbjct: 489 MTAL 492
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana GN=At5g25050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1202), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/475 (46%), Positives = 320/475 (67%), Gaps = 2/475 (0%)
Query: 22 QNDHDLQVTAKRTKLLSVFLEPFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVT 81
+N + V + +V P +WL+MLSS+L+ +F+FG++ +YG++QG GS +V T
Sbjct: 9 ENGGSVHVVKGESNFRNVVCGPVRWLKMLSSELHWSFVFGVVSLYGINQGLGGSLGRVAT 68
Query: 82 DYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVS 141
+YY KDVQKVQPS Q + +P ++KP+WG+ TD PI G+HRRPYF++AGV G VS
Sbjct: 69 EYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPYFILAGVLGVVS 128
Query: 142 ALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSA 201
L SL L + +AL SA +AIADV IDAC A NSI+ +LA DMQSLC S+
Sbjct: 129 LLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLASDMQSLCSLSSS 188
Query: 202 AGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVE 261
G+L+G+ +SG V+ +G +G G+L P L+ V+G V E K+V +
Sbjct: 189 IGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPHVPGF--SYKQVNQKFT 246
Query: 262 FTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYAL 321
K M+++MKC VW+PSLYMY+SL + ++ HEG FYW+TD K GP F+QE VG I ++
Sbjct: 247 DAGKAMWRTMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFAQETVGFILSI 306
Query: 322 GAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVIT 381
G++ S++ +Y LKD+P R L QLL+ +SGMLDLI + R NL G+PD F++
Sbjct: 307 GSIGSILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKFGLPDYLFIVV 366
Query: 382 EQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441
++ VS +I +++W+P++VL+++LCP GIEGTFFALLM ID+ G +TS W GGI+LH+L V
Sbjct: 367 DEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWLGGIMLHVLKV 426
Query: 442 TRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDELIPVDLLRKNSDTSTDDE 496
TRT+F NLWL +L+RNV+RL L +FLVPK DQ+ +P +++ ++SD D++
Sbjct: 427 TRTEFGNLWLAVLVRNVMRLLPLCFLFLVPKGDQNTFKLPDEIMGEDSDEEKDEK 481
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4KIL8|FBT5_ARATH Probable folate-biopterin transporter 5 OS=Arabidopsis thaliana GN=At5g25040 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/470 (44%), Positives = 306/470 (65%), Gaps = 6/470 (1%)
Query: 22 QNDHDLQVTAKRTKLLSVFLEPFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVT 81
+N + V + + L SV P +WL+ML+S+L+ +++F ++ G++QGF S V T
Sbjct: 9 ENRGSVHVVERESNLRSVVCGPVRWLKMLASKLHWSYVFAVVSNCGINQGFGYSLGHVAT 68
Query: 82 DYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCV 140
DYY KDVQKVQPS Q + + ++ KP++G+ TD PI G+HRRPYF++AGV G V
Sbjct: 69 DYYMKDVQKVQPSQYQALSAITRISWIIFKPLFGILTDVLPIFGFHRRPYFILAGVIGVV 128
Query: 141 SALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCS 200
S L SL L + +AL SA +AIADV IDAC NS + +LA DMQSLC
Sbjct: 129 SLLFISLQSNLHLYLALFWMTISSAAMAIADVTIDACTTYNSNKHPSLASDMQSLCSLSY 188
Query: 201 AAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENV 260
+ G L+G+ +SG V+ +G +G G+L L+ V+G + E R + +N
Sbjct: 189 SIGELLGFFMSGILVHLVGSKGVFGLLTFTFALVSVVGVLFSEPRVHGFSFK-----QNF 243
Query: 261 EFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYA 320
K M++++KC VW+PSLYM+++ A+ + EG FYW+TD K GP F+QE VG I +
Sbjct: 244 TNAMKAMWRTIKCSDVWQPSLYMFITRALGLDIKEGLFYWFTDSKDGPLFAQETVGFILS 303
Query: 321 LGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 380
+G++ S++GVL+Y+ LKD+P R L QLL+ +SGM DLI +LR NL G+PD F++
Sbjct: 304 IGSIGSILGVLLYNLRLKDHPFRKLFLWTQLLFALSGMFDLILVLRLNLKFGLPDYLFIV 363
Query: 381 TEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440
+ VS +I ++ W+ + VL+T+LCP GIEGTFFALLM ID+ G +TS W GG +LH+L
Sbjct: 364 VDGIVSKMIIRLTWMVIFVLNTKLCPHGIEGTFFALLMSIDNAGLMTSSWLGGKMLHVLK 423
Query: 441 VTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDELIPVDLLRKNSD 490
VTRT+F NLWL +L+RNV+RL + +FLVP+ DQ+ +P +++ ++S+
Sbjct: 424 VTRTEFGNLWLAVLVRNVMRLLPICFLFLVPQGDQNTFKLPAEIMGEDSE 473
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Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q55721|FBT_SYNY3 Folate-biopterin transporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0642 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 205/399 (51%), Gaps = 30/399 (7%)
Query: 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRP 129
QG G S++ ++ KD + P+ + IGL P ++KP+ GL +D P+ GY RR
Sbjct: 46 QGVLG-LSRLAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSDTVPLFGYRRRS 104
Query: 130 YFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAG---------IAIADVVIDA-CIA 179
Y ++G+ G L+F A S G AG +AI DV++D+ +
Sbjct: 105 YLWLSGLMGSAGWLLF----------AAWVSSGTQAGLVLLFTSLSVAIGDVIVDSLVVE 154
Query: 180 RNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGF 239
R E A +QSL +A G +I SG + + + AI P+L + F
Sbjct: 155 RAQRESLAQVGSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLTVGAAF 214
Query: 240 VIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFY 299
+I E +A E++K + K ++++++ + P+L+++ A + E F+
Sbjct: 215 LISEVSTAE---EEEKPQPKAQI--KLVWQAVRQKTILLPTLFIFFWQATP--SAESAFF 267
Query: 300 WYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGML 359
++T + G F +F+G + + +VA +IGV +Y + LK P R ++ + ++ + G+
Sbjct: 268 YFTTNELG--FEPKFLGRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVISSLLGLT 325
Query: 360 DLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMC 419
LI I N A+GI D +F + + + + +I ++P++VL+ RLCP GIE T FALLM
Sbjct: 326 TLILITHANRAMGIDDHWFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATLFALLMS 385
Query: 420 IDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNV 458
+ ++ + S G ++ H L VT T F NL L+++I N+
Sbjct: 386 VMNLAGVLSFEVGSLLTHWLGVTETQFDNLALLVIITNL 424
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Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q9SKZ5|FBT1_ARATH Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 201/399 (50%), Gaps = 19/399 (4%)
Query: 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRP 129
QG G +++ +Y KD + P+ + GL LP ++KP++G +D+ P+ GY RR
Sbjct: 137 QGVLG-LARLAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSVPLFGYRRRS 195
Query: 130 YFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALA 189
Y V++G+ G S + + + A +G + VV + R E ++++
Sbjct: 196 YLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSVAFSDVVVDSMVVERARGESQSVS 255
Query: 190 PDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANI 249
+QSLC SA G ++ SG V G + GV A+ P++ + ++ E R
Sbjct: 256 GSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGVTALLPLITSAVAVLVNEQRVVRP 315
Query: 250 RSEKKKVMENVEFTTKG-----------MYKSMKCPQVWKPSLYMYLSLAVSISTHEGQF 298
S +K EN+ + G ++ ++K P V+ P+L+++L A S +
Sbjct: 316 ASGQK---ENITLLSPGFLQTSKQNMIQLWGAIKQPNVFLPTLFIFLWQATPHS--DSAM 370
Query: 299 YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGM 358
+++T K G F+ EF+G + + ++AS++GV +Y+ LK PLR + + GM
Sbjct: 371 FYFTTNKLG--FTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKIFLVTTIFGTGLGM 428
Query: 359 LDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM 418
+I + +N LGI D +F I + + ++++ ++P++VL+ RLCP G+E T FA LM
Sbjct: 429 TQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPEGMEATLFATLM 488
Query: 419 CIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRN 457
I + GS+ G + +TR F NL +I++ N
Sbjct: 489 SISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIILCN 527
|
Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWQ5|FBT4_ARATH Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/489 (25%), Positives = 225/489 (46%), Gaps = 69/489 (14%)
Query: 45 QWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCY 104
WL+ L S F++ + L+Y +QGF SF Y KD ++ PS Q + +
Sbjct: 3 HWLKQLRSAFGVAFLWLVCLIY-FTQGFR-SFVWTAVSYQLKDRLQLSPSASQFVFSVAF 60
Query: 105 LPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL-----LGKLPIAIALAC 159
P +KP++G+ +D PI G R PY VI+ V V L+ L L + I L
Sbjct: 61 FPWSIKPLYGIISDCIPIGGKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTV 120
Query: 160 SVGISAGIAIADVVIDACIARN-SIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL 218
+ G A+ADVVIDA IA +E + A D+QS+ F A G + G + G+++++L
Sbjct: 121 Q---NLGSAMADVVIDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNL 177
Query: 219 GPQGALGVLAIPPVLLIVLGFVIYETRS-------------------------------- 246
+ + + P L ++ ++ E+ +
Sbjct: 178 KIETIFLLFTVLPALQLLSCALVEESPANNEPLPELLDSNEFEEKSLTSNDNYPDTSKSN 237
Query: 247 --------------ANIRSEKKKV---------MENVEFTTKGMYKSMKCPQVWKPSLYM 283
+N +SE +K ++++ T G+ ++ K P + +P +
Sbjct: 238 TRRRKGQKKGKKGDSNGKSETQKKQSKSLASQWFQSLKAATFGLGRAFKQPIILRPMAWF 297
Query: 284 YLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLR 343
+++ + FY+ T+ A F+G +G + M G IY++ L+D LR
Sbjct: 298 FIAHITVPNLSTVMFYYQTEVLQLDA---AFLGTARVVGWLGLMFGTFIYNRYLQDMTLR 354
Query: 344 NLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTR 403
L A + ++ +LD++ + R N+ G+ D V+ + I++++++P ++LS R
Sbjct: 355 KSLLFAHIGLSVTILLDMVLVSRANVGYGVSDKTMVLFGSALGDAINQLKFMPFLILSGR 414
Query: 404 LCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLAT 463
LCP GIEGT FAL M I+++G+ + G + LL ++ F N+++ + I+
Sbjct: 415 LCPPGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGISSGSFDNMFMGLAIQVFCTYIP 474
Query: 464 LGLIFLVPK 472
+ +FL+PK
Sbjct: 475 VLFLFLIPK 483
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4I5Q2|FBT8_ARATH Probable folate-biopterin transporter 8, chloroplastic OS=Arabidopsis thaliana GN=At1g04570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/425 (25%), Positives = 204/425 (48%), Gaps = 22/425 (5%)
Query: 61 GIILVYGLSQGFSGS--FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTD 118
GI ++ GL GS F + +++ +QPS +Q+ C LP V KP++G+ +D
Sbjct: 86 GISVLCGLGYWVQGSRCFPWLALNFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLSD 145
Query: 119 AFPIKGYHRRPYFVIAGVAGCVS-ALMFSLLGKLPIAIAL-ACSVGISAGIAIADVVIDA 176
I R PY I ++ M G + +L AC + + G +I +V DA
Sbjct: 146 VLYIGSGRRVPYIAIGVFLQVLAWGSMGIFQGAREVLPSLVACVLLSNLGASITEVAKDA 205
Query: 177 CIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV 236
+A + R +QS SAAG ++G + G+ + P+ + V + L +V
Sbjct: 206 LVAEYGLRYRI--NGLQSYALMASAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLV 263
Query: 237 LGFVIYETRSANIR-SEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHE 295
+ E R +E V+E+V+ + ++++ ++ +P ++ +S+A+ +
Sbjct: 264 VSLSSKEESFGLPRIAETSSVLESVKKQISNLKEAIQADEISQPLIWAVVSIAM-VPLLS 322
Query: 296 GQFYWYT------DPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSA 349
G + Y DP +G+ +G + + ++Y + LK P+R L+
Sbjct: 323 GSVFCYQTQVLNLDPSV--------IGMSKVIGQLMLLCLTVVYDRYLKTLPMRPLIHII 374
Query: 350 QLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGI 409
QLLYG+S +LD I + + NL GI + +V+ ++ I+++ + +P V +CP G
Sbjct: 375 QLLYGLSILLDYILVKQINLGFGISNEVYVLCFSSLAEILAQFKILPFAVRLASMCPQGC 434
Query: 410 EGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFL 469
EG+ + L + + S + G + +L+ +T ++++NL ILI+++ LA L + L
Sbjct: 435 EGSVTSFLASTLCLSQIVSAFLGVGLANLIGITSSNYSNLSSGILIQSLAALAPLCFMHL 494
Query: 470 VPKAD 474
VP ++
Sbjct: 495 VPMSE 499
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIQ7|FBT7_ARATH Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 176/391 (45%), Gaps = 24/391 (6%)
Query: 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRP 129
QGF G F + +++ + +V PSV+Q+ LP V KPI+G+ +D+ G HR P
Sbjct: 30 QGFRG-FPWLGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVSDSVYFFGQHRIP 88
Query: 130 YFVIAGVAGCVSALMFSLLGKLPIAIALACSVGI---SAGIAIADVVIDACIARNSIE-- 184
Y + + +S L + L + ++I LA S+ + + G ++ +V DA +A + +
Sbjct: 89 YIAVGALLQAISWLAIAFLSRSNVSI-LALSIYLLLSNLGASLVEVANDAIVAESGKQKT 147
Query: 185 IRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYET 244
+ ++ S S+ G ++G + G ++ Q V I L +L F++
Sbjct: 148 SETQSGELPSFVWMVSSLGGILGNLLGGIAIKTFSAQSTFLVFGI----LALLQFLV--- 200
Query: 245 RSANIRSEKKKVMEN------VEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQF 298
+ NIR + + EN + + ++ P++ ++ +S AV + G
Sbjct: 201 -TINIREKSLNLPENPSPAGGIRKHLSDLSHVLRKPEISYSIAWIAVSTAV-VPVLTGTM 258
Query: 299 YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGM 358
++Y +G+ G +A ++ Y++ LK R LL + Q+ +
Sbjct: 259 FFYQTKFL--KIDASLLGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFFVI 316
Query: 359 LDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM 418
DL+F+ LG+ DS +V+ + + +P VL RLCP G EG+ A +M
Sbjct: 317 SDLLFVKGVYRDLGVSDSVYVLFFSGFLETLFYFKILPFTVLMARLCPPGCEGSLMAFVM 376
Query: 419 CIDSIGSLTSKWGGGIVLHLLHVTRTDFTNL 449
++ + S + G ++ + VT DF+
Sbjct: 377 SAIALAFIVSGYLGIVLASFVGVTEDDFSGF 407
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|O22780|FBT9_ARATH Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 100/412 (24%), Positives = 188/412 (45%), Gaps = 16/412 (3%)
Query: 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYF---- 131
FS + +++ ++PS +Q+ LP V KP++G+ +D I G R PY
Sbjct: 100 FSWLALNFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYGVLSDVLYIGGARRVPYISVGV 159
Query: 132 VIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPD 191
++ G+A A+ LP +A + G +I +V DA +A + R
Sbjct: 160 LLQGLAWGSLAIFPGAREVLPSLMAFILLSNL--GASITEVSQDALVAEYGL--RYQING 215
Query: 192 MQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGA-LGVLAIPPVLLIVLGFVIYET----RS 246
+QS SA G ++G + G+ + P+ L A+ + LIV E+ R
Sbjct: 216 LQSYALMASAVGGILGNLLGGYCLLKTPPRILFLAFTALLSLQLIVSLSSKEESVNLPRI 275
Query: 247 ANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKA 306
+ E V+ V+ + ++ ++ +P +++ S+A+ + G + Y
Sbjct: 276 GEVTPEISSVLGIVKKQFLDLKGIVQVDEISQPLIWIVSSIAL-VPLLSGSVFCYQTQVL 334
Query: 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILR 366
+G+ +G + + ++Y + K P+R L+ QLLY S + D I + +
Sbjct: 335 N--LDPSVIGMSKVIGQLMLLCLTVVYDRYWKKLPMRALIHIVQLLYAFSLLFDYILVKQ 392
Query: 367 WNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSL 426
NLA GI ++ FV+ V+ I+++ + +P VL +CP G EG+ + L + S+
Sbjct: 393 INLAFGISNTAFVLCFSSVAEILAQFKILPFSVLLANMCPGGCEGSITSFLASTLCLSSV 452
Query: 427 TSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDE 478
S + G + +++ +T +++NL ILI+++ L L I VP + E
Sbjct: 453 VSGFTGVGMANMIGITSKNYSNLPAGILIQSLAALVPLWFIHYVPMLEPGFE 504
|
Could mediate folate transport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 511 | ||||||
| 224141981 | 519 | predicted protein [Populus trichocarpa] | 0.976 | 0.961 | 0.702 | 0.0 | |
| 224089380 | 479 | predicted protein [Populus trichocarpa] | 0.915 | 0.977 | 0.738 | 0.0 | |
| 359475893 | 518 | PREDICTED: uncharacterized protein LOC10 | 0.925 | 0.913 | 0.692 | 0.0 | |
| 356554135 | 523 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.967 | 0.618 | 0.0 | |
| 356562137 | 511 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.974 | 0.607 | 0.0 | |
| 297811191 | 502 | integral membrane transporter family pro | 0.951 | 0.968 | 0.657 | 1e-179 | |
| 15238279 | 503 | major facilitator protein [Arabidopsis t | 0.951 | 0.966 | 0.653 | 1e-179 | |
| 449493405 | 499 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.929 | 0.951 | 0.598 | 1e-164 | |
| 414885518 | 507 | TPA: hypothetical protein ZEAMMB73_22641 | 0.917 | 0.925 | 0.587 | 1e-163 | |
| 115479235 | 504 | Os09g0423400 [Oryza sativa Japonica Grou | 0.913 | 0.926 | 0.577 | 1e-162 |
| >gi|224141981|ref|XP_002324339.1| predicted protein [Populus trichocarpa] gi|222865773|gb|EEF02904.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/515 (70%), Positives = 426/515 (82%), Gaps = 16/515 (3%)
Query: 1 MESLENQELIVEKPPSISS----LKQNDHDLQV--TAKRTKLLSVFLEPFQWLQMLSSQL 54
M+ LE QEL+ + P S + + D Q T R LS+F+EPFQWLQMLSSQL
Sbjct: 1 MDPLETQELVGKSPTDSSKQALPISEQDQGRQSSETCARASPLSIFMEPFQWLQMLSSQL 60
Query: 55 NSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWG 114
N TFIFG+++VYGLSQGFSGSF KVVTD+YWKDVQKVQPS VQ+YIGL Y+P VMKPIWG
Sbjct: 61 NPTFIFGVVVVYGLSQGFSGSFFKVVTDFYWKDVQKVQPSAVQLYIGLYYIPWVMKPIWG 120
Query: 115 LFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVI 174
L TD FP++GY RRPYF++AGV GCVSALM + LGK+PIA+AL+C +GI+AG+AIADV I
Sbjct: 121 LLTDVFPVRGYKRRPYFLVAGVLGCVSALMVATLGKVPIAVALSCLIGITAGVAIADVTI 180
Query: 175 DACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLL 234
DACIA+NSIEIR+LAPDMQSLCG CS+ G+LIGY+ SGF +L +LA+PP +L
Sbjct: 181 DACIAKNSIEIRSLAPDMQSLCGICSSLGALIGYSSSGFF-------ASLVLLAVPPTIL 233
Query: 235 IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTH 294
IVLGFVIYE RS ++SEKKK +++ +GM K++K PQVWKPSLYMYLSLA+SISTH
Sbjct: 234 IVLGFVIYEVRSTTLQSEKKK---DLQIALRGMSKTIKLPQVWKPSLYMYLSLALSISTH 290
Query: 295 EGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYG 354
EGQFYWYT PKAGPAFSQEFVG+IYA+GA+AS+ GVLIY KTLKDYP R+LL AQLLYG
Sbjct: 291 EGQFYWYTYPKAGPAFSQEFVGMIYAVGALASIAGVLIYQKTLKDYPFRSLLLYAQLLYG 350
Query: 355 ISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFF 414
++GMLD+IF LRWNL +GIPD FFVI E+CVS IIS+IRWIPMIVLSTRLCP+GIEGTFF
Sbjct: 351 MTGMLDVIFFLRWNLVIGIPDYFFVIMEECVSRIISRIRWIPMIVLSTRLCPLGIEGTFF 410
Query: 415 ALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKAD 474
ALLMCIDS+GSL+SKWGGGIVLHL HVTRTDFTNLWL ILIRN LR AT+GLIFLVPK D
Sbjct: 411 ALLMCIDSLGSLSSKWGGGIVLHLFHVTRTDFTNLWLAILIRNFLRFATIGLIFLVPKGD 470
Query: 475 QSDELIPVDLLRKNSDTSTDDEGLQLVTINEKNQE 509
Q D+LIP D+L NSD S DD+GL+L + E ++E
Sbjct: 471 QEDDLIPPDILTANSDASLDDDGLELAPVKETSEE 505
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089380|ref|XP_002308712.1| predicted protein [Populus trichocarpa] gi|222854688|gb|EEE92235.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/474 (73%), Positives = 409/474 (86%), Gaps = 6/474 (1%)
Query: 41 LEPFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYI 100
+EPFQWLQMLSSQLN TFIFG+++VYG SQG SGSF KVVTDYYWKDVQKVQPS VQ+Y+
Sbjct: 1 MEPFQWLQMLSSQLNPTFIFGVVVVYGFSQGLSGSFFKVVTDYYWKDVQKVQPSAVQLYM 60
Query: 101 GLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACS 160
GL Y+P VMKPIWGLFTD FP++GY RRPYF++AGV GCVSALM +LLGK+PIA+AL+C
Sbjct: 61 GLYYIPWVMKPIWGLFTDVFPVRGYKRRPYFIVAGVLGCVSALMIALLGKVPIAVALSCL 120
Query: 161 VGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220
+GI+AG+AIADV IDACIA+NSIEIRALAPDMQSLCGFCS+ G+LIGY+ SGF V+HLGP
Sbjct: 121 IGITAGVAIADVTIDACIAKNSIEIRALAPDMQSLCGFCSSLGALIGYSSSGFFVHHLGP 180
Query: 221 QGALGV----LAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQV 276
Q L V LA+PP LLIVLGFVIYE RS I + +E ++ +GM K++K PQV
Sbjct: 181 QAGLYVSLVLLAVPPALLIVLGFVIYEVRSTKIIC--LQAVEGLQIALRGMSKTIKLPQV 238
Query: 277 WKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKT 336
WKPSLYMYLSLA+SISTHEG FYWYTDPKAGPAFSQEFVG+IYA+GA+AS+ GVLIY K
Sbjct: 239 WKPSLYMYLSLALSISTHEGHFYWYTDPKAGPAFSQEFVGIIYAVGALASIAGVLIYQKA 298
Query: 337 LKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIP 396
LK+ P R+L+ AQLLYG+SGMLDL F+LRWNLALGIPD FFVI E+CV+ IIS+IRW+P
Sbjct: 299 LKNCPFRSLILYAQLLYGMSGMLDLTFVLRWNLALGIPDYFFVIAEECVTRIISRIRWMP 358
Query: 397 MIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIR 456
MIVLSTRLCP+GIEGTFFALLMCIDS+G+L+SKWGGG++LHL HVTRTDFTNLWLVILIR
Sbjct: 359 MIVLSTRLCPLGIEGTFFALLMCIDSLGALSSKWGGGVLLHLFHVTRTDFTNLWLVILIR 418
Query: 457 NVLRLATLGLIFLVPKADQSDELIPVDLLRKNSDTSTDDEGLQLVTINEKNQEV 510
N LR ATLGLIFLVP+ DQ+D LIP D+L NS S DD+GL+LV + E ++EV
Sbjct: 419 NFLRFATLGLIFLVPRGDQADSLIPSDVLTANSAASLDDDGLELVPVKETSEEV 472
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475893|ref|XP_002283360.2| PREDICTED: uncharacterized protein LOC100244119 [Vitis vinifera] gi|296082148|emb|CBI21153.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/475 (69%), Positives = 400/475 (84%), Gaps = 2/475 (0%)
Query: 33 RTKLLSVFLEPFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQ 92
+T ++ ++PFQWLQML QLN TFI GI LVYGLSQGFS SF KVVTD+YWKDVQKVQ
Sbjct: 42 KTTPFTLLIQPFQWLQMLCKQLNPTFILGIALVYGLSQGFSNSFFKVVTDFYWKDVQKVQ 101
Query: 93 PSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLP 152
PSVVQ+YIG Y+P +MKP+WGL TD FP+ GY RRPYFV AGV G VSA + ++ G LP
Sbjct: 102 PSVVQLYIGFYYIPWIMKPVWGLLTDVFPVMGYRRRPYFVAAGVIGTVSAAVVAISGNLP 161
Query: 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSG 212
+A+AL C +GI+AG+AIADV IDACIARNSIEIR+LA DMQS GFCS+AG+L+GY+ SG
Sbjct: 162 VAVALGCLIGITAGVAIADVTIDACIARNSIEIRSLAADMQSFSGFCSSAGALLGYSSSG 221
Query: 213 FSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSE-KKKVMENVEFTTKGMYKSM 271
F V+HLG QGALG+L PP +L+VLGFVIYE+R+ N+ S K+K ME V+ + MY+++
Sbjct: 222 FFVHHLGAQGALGILVGPPAMLVVLGFVIYESRAPNLASNNKRKAMEKVDIAIRDMYRTI 281
Query: 272 KCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVL 331
+CPQVWKPSLYMYLSLA+SISTHEGQFYWYTDPKAGPAFSQEFVG+IYA+GA+AS++G+L
Sbjct: 282 RCPQVWKPSLYMYLSLALSISTHEGQFYWYTDPKAGPAFSQEFVGMIYAVGALASILGIL 341
Query: 332 IYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISK 391
IYHKTLKD P R LLF AQL+Y ISG+LD+IFILRWNLALG+PD FV+ E+C+S ++++
Sbjct: 342 IYHKTLKDCPFRTLLFFAQLIYAISGILDVIFILRWNLALGVPDYLFVVMEECISRVVAR 401
Query: 392 IRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWL 451
+RW+PMI+LST+LCP+GIEGTFFALLMCIDS+GSL+SKW GG+VLHLLHVTR+DFTNLWL
Sbjct: 402 VRWMPMIILSTKLCPLGIEGTFFALLMCIDSLGSLSSKWAGGMVLHLLHVTRSDFTNLWL 461
Query: 452 VILIRNVLRLATLGLIFLVPKADQSDELIPVDLLRKNSDTSTDDEGLQLVTINEK 506
V+LIRN+LRLATLGLIFLVP QSDE+I D L S S +D+ Q +NE
Sbjct: 462 VVLIRNILRLATLGLIFLVPNVGQSDEVISSDFLNDTSSVSEEDDEFQ-TCLNEN 515
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554135|ref|XP_003545404.1| PREDICTED: uncharacterized protein LOC100806186 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/509 (61%), Positives = 401/509 (78%), Gaps = 3/509 (0%)
Query: 3 SLENQELIVEKPPSISSLKQNDH--DLQVTAKRTKLLSVFLEPFQWLQMLSSQLNSTFIF 60
+L +Q + P ++ +N++ LL++ EPFQW+Q LSSQLN TF+
Sbjct: 14 NLPSQNPVPSHPHETDTMGENENATVTTKKKTSKTLLTLLTEPFQWIQKLSSQLNPTFVI 73
Query: 61 GIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAF 120
G+ L+YG+ QGFSGS KVV DYYWKDVQK+QP VQ+Y+G ++P V+KP+WG+ TDAF
Sbjct: 74 GVFLIYGIGQGFSGSLFKVVADYYWKDVQKIQPFTVQLYVGFYFIPWVLKPLWGILTDAF 133
Query: 121 PIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIAR 180
P++GY RRPYF+I+GV G VSA + + G L AL C VG+SA +AIADV IDACIAR
Sbjct: 134 PVRGYRRRPYFIISGVIGAVSAAVIAFAGNLAAVAALMCFVGVSASLAIADVTIDACIAR 193
Query: 181 NSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFV 240
NSIE+R LAPD+QSLCGFCS AG+L+GY SGF V+ LGPQ +LG++A+ P L IVLGFV
Sbjct: 194 NSIEVRELAPDLQSLCGFCSGAGALVGYLASGFFVHRLGPQESLGLMALSPALTIVLGFV 253
Query: 241 IYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYW 300
IYE R++ EKK+ +E+V + MY++M P VWKPSLYM+L+LA++++THEG FYW
Sbjct: 254 IYENRTSGSHIEKKQAVESVGMKIRSMYQTMLYPHVWKPSLYMFLALALNVTTHEGHFYW 313
Query: 301 YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLD 360
YTDPKAGPAFSQEFVG+IYA+GAVAS+IGVLIYHK LKDYP R+L+F AQLLYGISG+LD
Sbjct: 314 YTDPKAGPAFSQEFVGVIYAIGAVASLIGVLIYHKALKDYPFRDLVFYAQLLYGISGVLD 373
Query: 361 LIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCI 420
LIFILRWNL +GIPD FFV+ E+ + I SKIRW+PM+VLST+LCP+GIEGTFFALLMCI
Sbjct: 374 LIFILRWNLVIGIPDYFFVVIEESATRITSKIRWMPMMVLSTQLCPLGIEGTFFALLMCI 433
Query: 421 DSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDELI 480
DSIG+L S+WGGG++L +LH+TRTDFTNLWL +LIR++LR ATL L+FLVPK DQ +EL+
Sbjct: 434 DSIGALLSRWGGGVLLRVLHITRTDFTNLWLAVLIRDMLRFATLALVFLVPKTDQYEELL 493
Query: 481 PVDLLRKN-SDTSTDDEGLQLVTINEKNQ 508
P ++ KN SD ++E L+LV IN K +
Sbjct: 494 PFEVSGKNTSDKVDEEETLELVPINGKTE 522
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562137|ref|XP_003549330.1| PREDICTED: uncharacterized protein LOC100794191 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/505 (60%), Positives = 396/505 (78%), Gaps = 7/505 (1%)
Query: 6 NQELIVEKPPSISSLKQNDHDLQVTAKRTKLLSVFLEPFQWLQMLSSQLNSTFIFGIILV 65
+Q + P + +ND+ + LLS+ EP QW+Q LSSQLN TF+ G+ ++
Sbjct: 11 HQNPVPSLPHETEPMGENDNK-----TKKNLLSLLTEPIQWIQSLSSQLNPTFVIGVFII 65
Query: 66 YGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGY 125
YG+ QGFSGS KVV+DYYWKDVQK+QPS VQ+Y+G ++P V+KP+WG+ TDAFP++GY
Sbjct: 66 YGIGQGFSGSLFKVVSDYYWKDVQKIQPSTVQLYVGFYFIPWVLKPLWGILTDAFPVRGY 125
Query: 126 HRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEI 185
RRPYF+I+GV G +SA + + G L AL C +G+SA +AIADV IDACIARNSIE+
Sbjct: 126 RRRPYFIISGVIGAISAAVVAFAGNLAAVAALMCFLGVSASLAIADVTIDACIARNSIEM 185
Query: 186 RALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETR 245
R LAPD+QSLCGFCS AG+L+GY SGF V+ LG Q +LG++A+ P L IVLGFVIYE R
Sbjct: 186 RKLAPDLQSLCGFCSGAGALVGYLASGFFVHRLGTQESLGLMALSPALTIVLGFVIYENR 245
Query: 246 SANIRSEKK-KVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDP 304
++ EK+ + + +V + MY++M P VWKPSLYM+L+L ++++THEG FYWYTDP
Sbjct: 246 TSASHIEKQVRKLFSVGMKIRSMYQTMLYPHVWKPSLYMFLALTLNVTTHEGHFYWYTDP 305
Query: 305 KAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFI 364
KAGPAFSQEFVG+IYA+GAVAS+IGVLIYHK LKDY R+L+F AQLLYGISG+LDLIFI
Sbjct: 306 KAGPAFSQEFVGVIYAIGAVASLIGVLIYHKALKDYQFRDLVFYAQLLYGISGVLDLIFI 365
Query: 365 LRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIG 424
LRWNL +GIPD FFV+ E+ + I SKIRW+PM+VLST+LCP+GIEGTFFALLMCIDSIG
Sbjct: 366 LRWNLVIGIPDYFFVVLEESATRITSKIRWMPMMVLSTQLCPLGIEGTFFALLMCIDSIG 425
Query: 425 SLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDELIPVDL 484
+L SKWGGG++L +LH+TRTDFTNLWL +LIR++LR ATL L+FLVPK DQ +EL+P ++
Sbjct: 426 ALFSKWGGGMLLRVLHITRTDFTNLWLAVLIRDMLRFATLALVFLVPKTDQYEELLPSEV 485
Query: 485 LRKN-SDTSTDDEGLQLVTINEKNQ 508
KN S+ ++E L+LV I+ K +
Sbjct: 486 SGKNTSEKVHEEETLELVPIHGKTE 510
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811191|ref|XP_002873479.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297319316|gb|EFH49738.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 322/490 (65%), Positives = 396/490 (80%), Gaps = 4/490 (0%)
Query: 1 MESLENQELIVEKPPSISSLKQNDH-DLQVTAKRTKLLSVFLEPFQWLQMLSSQLNSTFI 59
ME+LE ++ + P + + +DH +++ A+R ++SV L+PFQWLQMLSS+LN +F+
Sbjct: 1 METLETEKFFSDDKPLLKPI--SDHSEIKTYARRNAVVSVLLQPFQWLQMLSSRLNLSFV 58
Query: 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDA 119
G++LVYG++QGFSGS KVVTDYYWKDVQ+VQPSVVQ+Y+GL Y+P VM+PIWGLFTD
Sbjct: 59 LGVVLVYGVNQGFSGSIFKVVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDV 118
Query: 120 FPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIA 179
FPIKGY R+PYFV++GV G VSA+ ++LGKLP A+AL+C +G+SA +AIADVVIDACIA
Sbjct: 119 FPIKGYKRKPYFVVSGVLGLVSAIAIAVLGKLPAALALSCLLGVSAAMAIADVVIDACIA 178
Query: 180 RNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGF 239
NSI IR+LAPD+QSLC CS+AG+L+GYA SG V+ LGPQGALGVLA P +++LGF
Sbjct: 179 TNSINIRSLAPDIQSLCMVCSSAGALVGYATSGVFVHRLGPQGALGVLAFSPATIVILGF 238
Query: 240 VIYETRSANIRSEK-KKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQF 298
IYE RS+ + +K KK + + KGM K++K P+VWKPSLYM++SLA++ISTHEG F
Sbjct: 239 FIYEKRSSTVPIQKNKKDTDGLGVAVKGMCKTIKYPEVWKPSLYMFISLALNISTHEGHF 298
Query: 299 YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGM 358
YWYTDP AGPAFSQEFVG+IYA+GA+ASM GVLIYHK LK Y RN+LF AQLLY SGM
Sbjct: 299 YWYTDPTAGPAFSQEFVGIIYAIGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGM 358
Query: 359 LDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM 418
LDL+FI RWNL LGIPDS FVITE+ V+ IISKIRWIPM+VLSTRLCP+GIEGTFFA LM
Sbjct: 359 LDLVFIKRWNLTLGIPDSLFVITEESVTKIISKIRWIPMVVLSTRLCPLGIEGTFFAFLM 418
Query: 419 CIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDE 478
CIDS G L SKWGGG LH VTR DF NLWLVILIRN+LRL T+ +FLVP +D D+
Sbjct: 419 CIDSFGQLASKWGGGFALHAFGVTRHDFGNLWLVILIRNLLRLVTVCFVFLVPDSDHLDD 478
Query: 479 LIPVDLLRKN 488
L+P D+L K
Sbjct: 479 LVPSDVLPKK 488
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238279|ref|NP_196643.1| major facilitator protein [Arabidopsis thaliana] gi|75173996|sp|Q9LEV7.1|FBT6_ARATH RecName: Full=Probable folate-biopterin transporter 6 gi|8979716|emb|CAB96837.1| putative protein [Arabidopsis thaliana] gi|332004217|gb|AED91600.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 320/490 (65%), Positives = 396/490 (80%), Gaps = 4/490 (0%)
Query: 1 MESLENQELIVEKPPSISSLKQNDH-DLQVTAKRTKLLSVFLEPFQWLQMLSSQLNSTFI 59
ME+LE ++ + P + + +DH +++ A+R ++SV ++PFQWLQMLSS+LN +F+
Sbjct: 1 METLETEKFFSDDKPLLKPI--SDHSEIKTKARRNAVVSVLIQPFQWLQMLSSRLNLSFV 58
Query: 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDA 119
G++LVYG++QGFSGS KVVTDYYWKDVQ+VQPSVVQ+Y+GL Y+P VM+PIWGLFTD
Sbjct: 59 LGVVLVYGVNQGFSGSIFKVVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDV 118
Query: 120 FPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIA 179
FPIKGY R+PYFV++GV G VSA+ +LGKLP A+AL+C +G+SA +AIADVVIDACIA
Sbjct: 119 FPIKGYKRKPYFVVSGVLGLVSAIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIA 178
Query: 180 RNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGF 239
NSI IR+LAPD+QSLC CS+AG+L+GYA SG V+ LGPQGALGVLA P +++LGF
Sbjct: 179 TNSINIRSLAPDIQSLCMVCSSAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGF 238
Query: 240 VIYETRSANIRSEK-KKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQF 298
IYE RS+ + ++K KK + + KGM K++K P+VWKPSLYM++SLA++ISTHEG F
Sbjct: 239 FIYEKRSSTVPTQKTKKDTDGLGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHF 298
Query: 299 YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGM 358
YWYTDP AGPAFSQEFVG+IYA+GA+ASM GVLIYHK LK Y RN+LF AQLLY SGM
Sbjct: 299 YWYTDPTAGPAFSQEFVGIIYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGM 358
Query: 359 LDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM 418
LDL+FI RWNL LGIPDS FVITE+ + +ISKIRWIPM+VLSTRLCP+GIEGTFFA LM
Sbjct: 359 LDLVFIKRWNLTLGIPDSLFVITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLM 418
Query: 419 CIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDE 478
CIDS G L SKWGGG VLH VTR DF NLWLVILIRN+LRL T+ +FLVP +D D+
Sbjct: 419 CIDSFGQLASKWGGGFVLHAFGVTRHDFGNLWLVILIRNILRLVTVCFVFLVPDSDHLDD 478
Query: 479 LIPVDLLRKN 488
L+P D+L K
Sbjct: 479 LVPSDVLPKK 488
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449493405|ref|XP_004159279.1| PREDICTED: LOW QUALITY PROTEIN: probable folate-biopterin transporter 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 286/478 (59%), Positives = 369/478 (77%), Gaps = 3/478 (0%)
Query: 35 KLLSVFLEPFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPS 94
KL S+ L+PF+WL+MLS++L+ +FI G+IL+YGLS GFSGS+ KVV+DYYWKDVQK+QPS
Sbjct: 22 KLFSIMLQPFRWLKMLSTELHPSFIAGVILIYGLSHGFSGSYFKVVSDYYWKDVQKLQPS 81
Query: 95 VVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIA 154
VVQIYIG+ +P VMKPIWGL TDAFP++GY RRPYFVI+GV G +A+ ++ G L +
Sbjct: 82 VVQIYIGIYTIPWVMKPIWGLLTDAFPVRGYLRRPYFVISGVVGATAAVGMAVKGGLGVL 141
Query: 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFS 214
AL +GIS +AIADV IDACI RNSIE++ LA D+QSLCG CS+ G LIGY+ SGF
Sbjct: 142 EALGLLIGISGAMAIADVTIDACIVRNSIEVQWLAQDLQSLCGACSSIGHLIGYSTSGFF 201
Query: 215 VNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIR---SEKKKVMENVEFTTKGMYKSM 271
V+ LG Q ALG+LAIPP L+++LGF I+ET S ++ K ++ V + K++
Sbjct: 202 VHLLGAQEALGILAIPPALVVLLGFFIHETPSPTLQYNGKSKGGSIKQVGVAIRDTCKAI 261
Query: 272 KCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVL 331
K P VW+PSL M+L L++SISTHEGQFYWYTD KAGPAFSQE VGLIYA+G+ AS+IGVL
Sbjct: 262 KYPHVWRPSLXMFLCLSLSISTHEGQFYWYTDKKAGPAFSQESVGLIYAVGSAASLIGVL 321
Query: 332 IYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISK 391
IYHKTL+D R +LF AQL YG++G LD+IF+LRWNLAL IPD FV+ E+CV+ I+++
Sbjct: 322 IYHKTLRDLKFRRILFFAQLFYGVAGFLDVIFVLRWNLALRIPDELFVVIEECVTRIVTR 381
Query: 392 IRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWL 451
IRW PM+VL+TRLC +GIEGTFFALL CIDS+G+L SKW GG+VLH VTR+DF NLWL
Sbjct: 382 IRWTPMMVLNTRLCSVGIEGTFFALLACIDSLGTLCSKWSGGLVLHAFGVTRSDFRNLWL 441
Query: 452 VILIRNVLRLATLGLIFLVPKADQSDELIPVDLLRKNSDTSTDDEGLQLVTINEKNQE 509
V+L+R VLR +G +FLVP A+Q+D LIP D +S D + + LV++ + ++
Sbjct: 442 VVLLRTVLRFVVVGFVFLVPDANQTDILIPGDHTMVRKSSSEDGDNIPLVSMKSEGRD 499
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414885518|tpg|DAA61532.1| TPA: hypothetical protein ZEAMMB73_226414 [Zea mays] gi|414885519|tpg|DAA61533.1| TPA: hypothetical protein ZEAMMB73_226414 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 278/473 (58%), Positives = 361/473 (76%), Gaps = 4/473 (0%)
Query: 41 LEPFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYI 100
LEP +W++ML +L +TF+ G++LVYGLSQGF+GSF +V +DYYWKDVQ+VQP+ VQ
Sbjct: 36 LEPVRWMRMLCRELGATFVAGVVLVYGLSQGFAGSFFRVASDYYWKDVQRVQPATVQFLS 95
Query: 101 GLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACS 160
++P V+KP+WG+ TD FPI GY RRPYF+ +G+ G VSA + ++ LP++ A+ C
Sbjct: 96 VFFFIPWVLKPLWGIMTDVFPICGYRRRPYFLFSGILGTVSAAIVAVTIGLPMSSAVLCL 155
Query: 161 VGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220
+GIS +AIADV IDA IA+NSI+ ALAPDMQSLC F S+ G+L+GYA SG V+HLG
Sbjct: 156 MGISTAVAIADVTIDASIAKNSIDKPALAPDMQSLCAFSSSLGALVGYATSGLFVHHLGA 215
Query: 221 QGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPS 280
QGALGV+AIPP ++ LGF IYE ++ + K+KV+ V KGM ++++ P VW+PS
Sbjct: 216 QGALGVMAIPPATVVFLGFFIYELKTHQ-HNVKEKVLNKVGGAVKGMVRTIRYPVVWRPS 274
Query: 281 LYMYLSLAVSISTHEGQFYWYTDPKA-GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKD 339
LYM+LSLA+SISTHEGQFYWYT+ P FSQEFVGL++A+GAVASM+GVL+YHK LKD
Sbjct: 275 LYMFLSLALSISTHEGQFYWYTNKTPPNPGFSQEFVGLVHAIGAVASMLGVLVYHKCLKD 334
Query: 340 YPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIV 399
YP R++L AQLLYG+SG+LDL F+LRWNLALGIPD+ FV E+CVS +++++R +PM+V
Sbjct: 335 YPFRSILLYAQLLYGVSGLLDLTFVLRWNLALGIPDAAFVTLEECVSRVVARVRLMPMMV 394
Query: 400 LSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVL 459
LST+LCP G+EGTFFALLMCIDS+G L +K GG VL L VTRTDF +LWL +L+RNVL
Sbjct: 395 LSTKLCPPGMEGTFFALLMCIDSLGMLAAKAGGAAVLRALRVTRTDFGHLWLAVLLRNVL 454
Query: 460 RLATLGLIFLVPKADQSDELIPVDLLRKNSDTSTDDEG--LQLVTINEKNQEV 510
RLATLG I LVP A Q+D L+P +LL + DDE LQL + +V
Sbjct: 455 RLATLGAIGLVPTAGQTDVLVPRELLVSSPAGVADDEEERLQLAMLTSHTDDV 507
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115479235|ref|NP_001063211.1| Os09g0423400 [Oryza sativa Japonica Group] gi|50725892|dbj|BAD33420.1| integral membrane transporter-like protein [Oryza sativa Japonica Group] gi|50726132|dbj|BAD33653.1| integral membrane transporter-like protein [Oryza sativa Japonica Group] gi|113631444|dbj|BAF25125.1| Os09g0423400 [Oryza sativa Japonica Group] gi|125563763|gb|EAZ09143.1| hypothetical protein OsI_31413 [Oryza sativa Indica Group] gi|215701413|dbj|BAG92837.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/476 (57%), Positives = 355/476 (74%), Gaps = 9/476 (1%)
Query: 38 SVFLEPFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQ 97
S L+P +WL+ML +L +TF+ G++LVYGLSQGF+GSF +V +DYYWKDVQ+VQP+ VQ
Sbjct: 21 STALQPVRWLRMLCRELGATFVAGVVLVYGLSQGFAGSFFRVASDYYWKDVQRVQPATVQ 80
Query: 98 IYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIAL 157
+ + ++P V+KP+WG+ TD FP++GY RRPYF+ AGV G SA + +++ LP+ A+
Sbjct: 81 LLSAVFFIPWVLKPLWGIMTDVFPVRGYRRRPYFLFAGVLGTASAAIVTMVNGLPMTSAI 140
Query: 158 ACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH 217
VGIS +AIADV IDACIA+N I+ +L PDMQSLC F S+ G+LIGYA SG V+H
Sbjct: 141 LSFVGISTAVAIADVTIDACIAKNGIDKPSLVPDMQSLCAFSSSLGALIGYATSGMFVHH 200
Query: 218 LGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVW 277
LG QGALGV+A+PP L+ LGF IYE + + K+KV+ V KGM +++K P VW
Sbjct: 201 LGAQGALGVMALPPATLVFLGFFIYELKMYQ-HNVKEKVLNKVHMAVKGMAQTIKYPVVW 259
Query: 278 KPSLYMYLSLAVSISTHEGQFYWYTDPK-AGPAFSQEFVGLIYALGAVASMIGVLIYHKT 336
KPSLYM+LSLA+SISTHEGQFYWYT + P FSQEFVG+++A+GAVASM+GVL+YHK
Sbjct: 260 KPSLYMFLSLALSISTHEGQFYWYTSKEPPNPGFSQEFVGMVHAIGAVASMVGVLVYHKY 319
Query: 337 LKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIP 396
LKDYP R++LF AQLLYG+SG+LDL F+LRWNL LG+PD+ FV E+C + ++ ++R +P
Sbjct: 320 LKDYPFRSILFYAQLLYGVSGLLDLTFVLRWNLLLGVPDAAFVTLEECCARVVGRVRLMP 379
Query: 397 MIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIR 456
M+VLST+LCP G EGTFFALLMCIDS G L +K GG VL L VTRTDF LWL +L+R
Sbjct: 380 MMVLSTKLCPPGAEGTFFALLMCIDSAGMLAAKAGGAAVLRALRVTRTDFARLWLAVLVR 439
Query: 457 NVLRLATLGLIFLVPKADQSDELIPVDLLRKNSDTS-------TDDEGLQLVTINE 505
N+LRL+TL I LVP ADQ+D L+P DLL D S D+E LQL +
Sbjct: 440 NLLRLSTLAAISLVPTADQTDVLLPRDLLAVAGDGSPPAAGDGDDEERLQLAKFAD 495
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 511 | ||||||
| TAIR|locus:2183810 | 503 | AT5G10820 "AT5G10820" [Arabido | 0.980 | 0.996 | 0.590 | 5.7e-162 | |
| TAIR|locus:2017814 | 497 | AT1G79710 "AT1G79710" [Arabido | 0.919 | 0.945 | 0.439 | 2.2e-112 | |
| TAIR|locus:2179285 | 499 | AT5G25050 "AT5G25050" [Arabido | 0.927 | 0.949 | 0.431 | 1.1e-110 | |
| TAIR|locus:2045462 | 560 | AT2G32040 "AT2G32040" [Arabido | 0.800 | 0.730 | 0.279 | 2e-40 | |
| UNIPROTKB|Q55721 | 494 | slr0642 "Folate-biopterin tran | 0.878 | 0.908 | 0.268 | 3.3e-40 | |
| TAIR|locus:2160150 | 491 | AT5G54860 "AT5G54860" [Arabido | 0.444 | 0.462 | 0.265 | 3.9e-36 | |
| GENEDB_PFALCIPARUM|PF11_0172 | 455 | PF11_0172 "folate/biopterin tr | 0.455 | 0.512 | 0.258 | 4.2e-26 | |
| UNIPROTKB|Q8IIK1 | 455 | PF11_0172 "Folate/biopterin tr | 0.455 | 0.512 | 0.258 | 4.2e-26 | |
| TAIR|locus:2197803 | 542 | AT1G04570 "AT1G04570" [Arabido | 0.794 | 0.749 | 0.239 | 5.6e-24 | |
| GENEDB_PFALCIPARUM|MAL8P1.13 | 505 | MAL8P1.13 "integral membrane p | 0.749 | 0.758 | 0.22 | 4.7e-21 |
| TAIR|locus:2183810 AT5G10820 "AT5G10820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
Identities = 298/505 (59%), Positives = 372/505 (73%)
Query: 1 MESLENQELIVEKPPSISSLKQNDH-DLQVTAKRTKLLSVFLEPFQWLQMLSSQLNSTFI 59
ME+LE ++ + P + + +DH +++ A+R ++SV ++PFQWLQMLSS+LN +F+
Sbjct: 1 METLETEKFFSDDKPLLKPI--SDHSEIKTKARRNAVVSVLIQPFQWLQMLSSRLNLSFV 58
Query: 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDA 119
G++LVYG++QGFSGS KVVTDYYWKDVQ+VQPSVVQ+Y+GL Y+P VM+PIWGLFTD
Sbjct: 59 LGVVLVYGVNQGFSGSIFKVVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDV 118
Query: 120 FPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALXXXXXXXXXXXXXXXXXXXXXX 179
FPIKGY R+PYFV++GV G VSA+ +LGKLP A+AL
Sbjct: 119 FPIKGYKRKPYFVVSGVLGLVSAIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIA 178
Query: 180 RNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGXXXXXXXXXXXXXXXXF 239
NSI IR+LAPD+QSLC CS+AG+L+GYA SG V+ LGPQG F
Sbjct: 179 TNSINIRSLAPDIQSLCMVCSSAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGF 238
Query: 240 VIYETRSANIRSEK-KKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQF 298
IYE RS+ + ++K KK + + KGM K++K P+VWKPSLYM++SLA++ISTHEG F
Sbjct: 239 FIYEKRSSTVPTQKTKKDTDGLGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHF 298
Query: 299 YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGM 358
YWYTDP AGPAFSQEFVG+IYA+GA+ASM GVLIYHK LK Y RN+LF AQLLY SGM
Sbjct: 299 YWYTDPTAGPAFSQEFVGIIYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGM 358
Query: 359 LDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM 418
LDL+FI RWNL LGIPDS FVITE+ + +ISKIRWIPM+VLSTRLCP+GIEGTFFA LM
Sbjct: 359 LDLVFIKRWNLTLGIPDSLFVITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLM 418
Query: 419 CIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDE 478
CIDS G L SKWGGG VLH VTR DF NLWLVILIRN+LRL T+ +FLVP +D D+
Sbjct: 419 CIDSFGQLASKWGGGFVLHAFGVTRHDFGNLWLVILIRNILRLVTVCFVFLVPDSDHLDD 478
Query: 479 LIPVDLLRKNSDTSTDDEGLQLVTI 503
L+P D+L K DD+ ++L+ +
Sbjct: 479 LVPSDVLPKKQSEDDDDDDIKLLLL 503
|
|
| TAIR|locus:2017814 AT1G79710 "AT1G79710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 208/473 (43%), Positives = 305/473 (64%)
Query: 32 KRTKLLSVFLE-PFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQK 90
K+ +L + L+ P +WL+ML +L+ +F FG+I+VYG+SQG SKV T YY+KD QK
Sbjct: 22 KKEGVLDLVLKRPLRWLRMLIEELHWSFFFGVIIVYGVSQGLGKGLSKVSTQYYFKDEQK 81
Query: 91 VQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGK 150
+QPS QIY+GL +P ++KP+WGL TD P+ GY RRPYF++AG +S ++ L
Sbjct: 82 IQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRPYFILAGFLAMISMMVLWLHTN 141
Query: 151 LPIAIALXXXXXXXXXXXXXXXXXXXXXXRNSIEIRALAPDMQSLCGFCSAAGSLIGYAV 210
L +A+AL + SI LA DMQSLCG CS+ GSL+G+++
Sbjct: 142 LHLALALSCLVAGSAGVAIADVTIDACVTQCSISHPTLAADMQSLCGLCSSIGSLVGFSL 201
Query: 211 SGFSVNHLGPQGXXXXXXXXXXXXXXXXFVIYETRSANIRSEKKKVMENVEFTTKGMYKS 270
SG V+ +G +G V+ E+ S ++ +K V + ++K+
Sbjct: 202 SGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESPSRSLG--RKHVNDKFLDAGSAIWKT 259
Query: 271 MKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGV 330
+ +VW+P L+M LS AVS+ HEG FYWYTD K GP+FS+E VG I + GA+ S++G+
Sbjct: 260 FQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFSKEAVGSIMSFGAIGSLVGI 319
Query: 331 LIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIIS 390
L+Y LK++P RN++F A L +SG LDLI +LR NL LG+PD FF++ ++ VSH+IS
Sbjct: 320 LLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRINLKLGLPDYFFIVVDEFVSHMIS 379
Query: 391 KIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLW 450
+I+W+P++VLS++LCP G+EGTFFALLM I+ IG L S WGGG++LH L VTRT F NLW
Sbjct: 380 RIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWGGGVLLHALKVTRTQFDNLW 439
Query: 451 LVILIRNVLRLATLGLIFLVPKADQSDELIPVDLLRKNSDTSTDDEGLQLVTI 503
LVI+IR++LR+ +GL+FL+P D + ++P ++L D E +++ +
Sbjct: 440 LVIVIRSLLRVIPIGLVFLIPNVDSNSTILPAEMLTSRISEGVDTEKIEMTAL 492
|
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| TAIR|locus:2179285 AT5G25050 "AT5G25050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 206/477 (43%), Positives = 299/477 (62%)
Query: 22 QNDHDLQVTAKRTKLLSVFLEPFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVT 81
+N + V + +V P +WL+MLSS+L+ +F+FG++ +YG++QG GS +V T
Sbjct: 9 ENGGSVHVVKGESNFRNVVCGPVRWLKMLSSELHWSFVFGVVSLYGINQGLGGSLGRVAT 68
Query: 82 DYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVS 141
+YY KDVQKVQPS Q + +P ++KP+WG+ TD PI G+HRRPYF++AGV G VS
Sbjct: 69 EYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPYFILAGVLGVVS 128
Query: 142 ALMFSLLGKLPIAIALXXXXXXXXXXXXXXXXXXXXXXRNSIEIRALAPDMQSLCGFCSA 201
L SL L + +AL NSI+ +LA DMQSLC S+
Sbjct: 129 LLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLASDMQSLCSLSSS 188
Query: 202 AGSLIGYAVSGFSVNHLGPQGXXXXXXXXXXXXXXXXFVIYETRSANIRSEKKKVMENVE 261
G+L+G+ +SG V+ +G +G V E K+V +
Sbjct: 189 IGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPHVPGF--SYKQVNQKFT 246
Query: 262 FTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYAL 321
K M+++MKC VW+PSLYMY+SL + ++ HEG FYW+TD K GP F+QE VG I ++
Sbjct: 247 DAGKAMWRTMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFAQETVGFILSI 306
Query: 322 GAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVIT 381
G++ S++ +Y LKD+P R L QLL+ +SGMLDLI + R NL G+PD F++
Sbjct: 307 GSIGSILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKFGLPDYLFIVV 366
Query: 382 EQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441
++ VS +I +++W+P++VL+++LCP GIEGTFFALLM ID+ G +TS W GGI+LH+L V
Sbjct: 367 DEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWLGGIMLHVLKV 426
Query: 442 TRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDELIPVDLLRKNSDTSTDD-EG 497
TRT+F NLWL +L+RNV+RL L +FLVPK DQ+ +P +++ ++SD D+ EG
Sbjct: 427 TRTEFGNLWLAVLVRNVMRLLPLCFLFLVPKGDQNTFKLPDEIMGEDSDEEKDEKEG 483
|
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| TAIR|locus:2045462 AT2G32040 "AT2G32040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 122/436 (27%), Positives = 211/436 (48%)
Query: 62 IILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFP 121
+ +VY + QG G +++ +Y KD + P+ + GL LP ++KP++G +D+ P
Sbjct: 130 VAMVYFV-QGVLG-LARLAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSVP 187
Query: 122 IKGYHRRPYFVIAGVAGCVS-ALMFSLL-GKLPIAIALXXXXXXXXXXXXXXXXXXXXXX 179
+ GY RR Y V++G+ G S +LM + K A +
Sbjct: 188 LFGYRRRSYLVLSGLLGAFSWSLMAGFVDSKYSAAFCILLGSLSVAFSDVVVDSMVVERA 247
Query: 180 RNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGXXXXXXXXXXXXXXXXF 239
R E ++++ +QSLC SA G ++ SG V G +
Sbjct: 248 RG--ESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGVTALLPLITSAVAV 305
Query: 240 VIYETRSANIRSEKKKVMENVEFTTKG-----------MYKSMKCPQVWKPSLYMYLSLA 288
++ E R S +K EN+ + G ++ ++K P V+ P+L+++L A
Sbjct: 306 LVNEQRVVRPASGQK---ENITLLSPGFLQTSKQNMIQLWGAIKQPNVFLPTLFIFLWQA 362
Query: 289 VSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFS 348
S + +++T K G F+ EF+G + + ++AS++GV +Y+ LK PLR + F
Sbjct: 363 TPHS--DSAMFYFTTNKLG--FTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKI-FL 417
Query: 349 AQLLYGIS-GMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPI 407
++G GM +I + +N LGI D +F I + + ++++ ++P++VL+ RLCP
Sbjct: 418 VTTIFGTGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPE 477
Query: 408 GIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLI 467
G+E T FA LM I + GS+ G + +TR F NL +I++ N+ L L L+
Sbjct: 478 GMEATLFATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIILCNLSSLLPLPLL 537
Query: 468 FLVPKADQSDELIPVD 483
L+P+ D D L D
Sbjct: 538 GLLPR-DSPDTLTKDD 552
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| UNIPROTKB|Q55721 slr0642 "Folate-biopterin transporter" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 125/466 (26%), Positives = 218/466 (46%)
Query: 36 LLSVFLEPFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSV 95
L S L+ F ++L S + I+ +Y + QG G S++ ++ KD + P+
Sbjct: 13 LFSTPLKRFLREKVLLGNAPSWELLAILSIYFV-QGVLG-LSRLAVSFFLKDELGLSPAA 70
Query: 96 VQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAI 155
+ IGL P ++KP+ GL +D P+ GY RR Y ++G+ G L+F+
Sbjct: 71 MGALIGLGAAPWILKPVLGLMSDTVPLFGYRRRSYLWLSGLMGSAGWLLFAAWVSSGTQA 130
Query: 156 ALXXXXXXXXXXXXXXXXXXXXXXRNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSV 215
L R E A +QSL +A G +I SG +
Sbjct: 131 GLVLLFTSLSVAIGDVIVDSLVVERAQRESLAQVGSLQSLTWGAAAVGGIITAYASGALL 190
Query: 216 NHLGPQGXXXXXXXXXXXXXXXXFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQ 275
+ F+I E +A E++K + K ++++++
Sbjct: 191 EWFSTRTVFAITAIFPLLTVGAAFLISEVSTAE---EEEKPQPKAQI--KLVWQAVRQKT 245
Query: 276 VWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHK 335
+ P+L+++ A + E F+++T + G F +F+G + + +VA +IGV +Y +
Sbjct: 246 ILLPTLFIFFWQATPSA--ESAFFYFTTNELG--FEPKFLGRVRLVTSVAGLIGVGLYQR 301
Query: 336 TLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWI 395
LK P R ++ + ++ + G+ LI I N A+GI D +F + + + + +I ++
Sbjct: 302 FLKTLPFRVIMGWSTVISSLLGLTTLILITHANRAMGIDDHWFSLGDSIILTVTGQIAFM 361
Query: 396 PMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILI 455
P++VL+ RLCP GIE T FALLM + ++ + S G ++ H L VT T F NL L+++I
Sbjct: 362 PVLVLAARLCPPGIEATLFALLMSVMNLAGVLSFEVGSLLTHWLGVTETQFDNLALLVII 421
Query: 456 RNVLRLATLGLIFLVPKADQSDELIPVDLLRKNSDTSTDDEGLQLV 501
N+ L L + L+P D + D K + + DD G +LV
Sbjct: 422 TNLSTLLPLPFLGLLPAGDPQVK----DKTEK--EDNPDDPGDRLV 461
|
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| TAIR|locus:2160150 AT5G54860 "AT5G54860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 3.9e-36, Sum P(2) = 3.9e-36
Identities = 61/230 (26%), Positives = 121/230 (52%)
Query: 243 ETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYT 302
ET+ +S + ++++ T G+ ++ K P + +P + +++ + FY+ T
Sbjct: 257 ETQKKQSKSLASQWFQSLKAATFGLGRAFKQPIILRPMAWFFIAHITVPNLSTVMFYYQT 316
Query: 303 DPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLI 362
+ A F+G +G + M G IY++ L+D LR L A + ++ +LD++
Sbjct: 317 EVLQLDA---AFLGTARVVGWLGLMFGTFIYNRYLQDMTLRKSLLFAHIGLSVTILLDMV 373
Query: 363 FILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDS 422
+ R N+ G+ D V+ + I++++++P ++LS RLCP GIEGT FAL M I++
Sbjct: 374 LVSRANVGYGVSDKTMVLFGSALGDAINQLKFMPFLILSGRLCPPGIEGTLFALFMSINN 433
Query: 423 IGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPK 472
+G+ + G + LL ++ F N+++ + I+ + +FL+PK
Sbjct: 434 LGNTVGSFMGAGLASLLGISSGSFDNMFMGLAIQVFCTYIPVLFLFLIPK 483
|
|
| GENEDB_PFALCIPARUM|PF11_0172 PF11_0172 "folate/biopterin transporter, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 63/244 (25%), Positives = 120/244 (49%)
Query: 249 IRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGP 308
++ ++ N+ + K + P P LY+++ + S ++ F+++ K G
Sbjct: 221 LKEKEYSTNRNIFNQLSDLIKFINTPIFLGPFLYIFVYM--SGPDYDDAFFFFCTNKLG- 277
Query: 309 AFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWN 368
F F+G + +AS+IG++IY LK+ LR L L+ + +I N
Sbjct: 278 -FRPSFMGTLRLTYGIASLIGIIIYRVFLKNCSLRKTLIITTLVSFPIYISPIILTEHIN 336
Query: 369 LALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTS 428
LGI + FV++ + I++I+ +P+ +L+ +C G+E + FA ++ + ++GSLT
Sbjct: 337 KFLGISNELFVLSGGFLIEAITEIQLLPLFILTANICQPGLEASVFATILSVKNLGSLTK 396
Query: 429 KWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDELIPVDLLRKN 488
K + +L+ + +F NL L IL L +L L+ L+P + ++L KN
Sbjct: 397 KGTSSFITYLMKIDSYNFDNLSLYILTCGFFLLFSLTLVPLLPNEEHIEKL-------KN 449
Query: 489 SDTS 492
+TS
Sbjct: 450 KETS 453
|
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| UNIPROTKB|Q8IIK1 PF11_0172 "Folate/biopterin transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 4.2e-26, Sum P(2) = 4.2e-26
Identities = 63/244 (25%), Positives = 120/244 (49%)
Query: 249 IRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGP 308
++ ++ N+ + K + P P LY+++ + S ++ F+++ K G
Sbjct: 221 LKEKEYSTNRNIFNQLSDLIKFINTPIFLGPFLYIFVYM--SGPDYDDAFFFFCTNKLG- 277
Query: 309 AFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWN 368
F F+G + +AS+IG++IY LK+ LR L L+ + +I N
Sbjct: 278 -FRPSFMGTLRLTYGIASLIGIIIYRVFLKNCSLRKTLIITTLVSFPIYISPIILTEHIN 336
Query: 369 LALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTS 428
LGI + FV++ + I++I+ +P+ +L+ +C G+E + FA ++ + ++GSLT
Sbjct: 337 KFLGISNELFVLSGGFLIEAITEIQLLPLFILTANICQPGLEASVFATILSVKNLGSLTK 396
Query: 429 KWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDELIPVDLLRKN 488
K + +L+ + +F NL L IL L +L L+ L+P + ++L KN
Sbjct: 397 KGTSSFITYLMKIDSYNFDNLSLYILTCGFFLLFSLTLVPLLPNEEHIEKL-------KN 449
Query: 489 SDTS 492
+TS
Sbjct: 450 KETS 453
|
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| TAIR|locus:2197803 AT1G04570 "AT1G04570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 5.6e-24, P = 5.6e-24
Identities = 101/422 (23%), Positives = 188/422 (44%)
Query: 61 GIILVYGLSQGFSGS--FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTD 118
GI ++ GL GS F + +++ +QPS +Q+ C LP V KP++G+ +D
Sbjct: 86 GISVLCGLGYWVQGSRCFPWLALNFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLSD 145
Query: 119 AFPIKGYHRRPYFVIAGVAGCVSAL--MFSLLGKLPIAIALXXXXXXXXXXXXXXXXXXX 176
I R PY I GV V A M G + +L
Sbjct: 146 VLYIGSGRRVPYIAI-GVFLQVLAWGSMGIFQGAREVLPSLVACVLLSNLGASITEVAKD 204
Query: 177 XXXRNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGXXXXXXXXXXXXXX 236
+R +QS SAAG ++G + G+ + P+
Sbjct: 205 ALVAE-YGLRYRINGLQSYALMASAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLV 263
Query: 237 XXFVIYETRSANIR-SEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHE 295
E R +E V+E+V+ + ++++ ++ +P ++ +S+A+ +
Sbjct: 264 VSLSSKEESFGLPRIAETSSVLESVKKQISNLKEAIQADEISQPLIWAVVSIAM-VPLLS 322
Query: 296 GQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGI 355
G + Y +G+ +G + + ++Y + LK P+R L+ QLLYG+
Sbjct: 323 GSVFCYQTQVLN--LDPSVIGMSKVIGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGL 380
Query: 356 SGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGT--- 412
S +LD I + + NL GI + +V+ ++ I+++ + +P V +CP G EG+
Sbjct: 381 SILLDYILVKQINLGFGISNEVYVLCFSSLAEILAQFKILPFAVRLASMCPQGCEGSVTS 440
Query: 413 FFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPK 472
F A +C+ I +++ G G+ +L+ +T ++++NL ILI+++ LA L + LVP
Sbjct: 441 FLASTLCLSQI--VSAFLGVGLA-NLIGITSSNYSNLSSGILIQSLAALAPLCFMHLVPM 497
Query: 473 AD 474
++
Sbjct: 498 SE 499
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| GENEDB_PFALCIPARUM|MAL8P1.13 MAL8P1.13 "integral membrane protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 4.7e-21, P = 4.7e-21
Identities = 88/400 (22%), Positives = 180/400 (45%)
Query: 83 YYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSA 142
Y KD + P+ + I + +P +K +W + +D +PI GY RR Y+++ G C+ +
Sbjct: 76 YLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAVISDNYPIFGY-RRKYYLLLGSFLCILS 134
Query: 143 LM-FSLL--GKLPIAIALXXXXXXXXXXXXXXXXXXXXXXRNSIEIRALAPDMQSLCGFC 199
L+ L+ L I I L + I + A ++ F
Sbjct: 135 LICLGLITHNNLFITILLLFIYFFGSSLCNVIGEAQVVESNRNCSINSSARNVSLFFAFR 194
Query: 200 SAAGSLIGYAVSGFSVNHLGPQGXXXXXXXXXXXXXXXXFVIYETRSANIRSEKKKVMEN 259
+ +++ Y +SG+ + + + F I E R+ S K ++
Sbjct: 195 KLSFAIMSY-LSGYLLLLISKKHIFLIGSFLPICVFTSGFFIIEKRNYTKSSIKDQI--- 250
Query: 260 VEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIY 319
K +Y +K + +++++ ++ S F++ T+ FS +G +
Sbjct: 251 -----KCIYSIIKLSYLKNFIIFIFIMMSTP-SCGNTLFFYITNELK---FSPNLLGKMA 301
Query: 320 ALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFV 379
++AS I ++ Y +R LL + ++ +L L+ I + N L IP++ F
Sbjct: 302 MFQSLASFISIISYMLFFTKIDIRKLLLYSTIIITPFCLLPLVVIKKVNYFLFIPNTLFF 361
Query: 380 ITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLL 439
IT+ + I++ + +P++VL +RL P G E T ++LL+ ++ S+ S + ++ + L
Sbjct: 362 ITDTVLIEFIAEFQTMPILVLCSRLIPEGFESTIYSLLLSSNNFASIISSFLSSLLTYSL 421
Query: 440 HVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQSDEL 479
++T T+FTNL +I+I + + + ++++P Q L
Sbjct: 422 NITSTNFTNLPYMIIICCLTNIIPIFFLYILPNHSQKKNL 461
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LEV7 | FBT6_ARATH | No assigned EC number | 0.6530 | 0.9510 | 0.9662 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XVIII.1934.1 | hypothetical protein (440 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.I.3658.1 | hypothetical protein (201 aa) | • | 0.421 | |||||||
 | gw1.29.56.1 | hypothetical protein (278 aa) | • | 0.421 | |||||||
 | eugene3.121720001 | hypothetical protein (63 aa) | • | 0.419 | |||||||
 | estExt_fgenesh4_pg.C_LG_V0629 | hypothetical protein (251 aa) | • | 0.419 | |||||||
 | gw1.II.1221.1 | hypothetical protein (155 aa) | • | 0.417 | |||||||
 | estExt_Genewise1_v1.C_LG_XIV1543 | SubName- Full=Putative uncharacterized protein; (151 aa) | • | 0.416 | |||||||
 | eugene3.00080706 | hypothetical protein (213 aa) | • | 0.415 | |||||||
 | gw1.II.1028.1 | hypothetical protein (152 aa) | • | 0.413 | |||||||
 | estExt_Genewise1_v1.C_1340217 | hypothetical protein (132 aa) | • | 0.409 | |||||||
 | gw1.XV.3200.1 | hypothetical protein (265 aa) | • | 0.402 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 511 | |||
| pfam03092 | 425 | pfam03092, BT1, BT1 family | 1e-104 | |
| TIGR00788 | 468 | TIGR00788, fbt, folate/biopterin transporter | 3e-57 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-06 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.001 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.002 |
| >gnl|CDD|111933 pfam03092, BT1, BT1 family | Back alignment and domain information |
|---|
Score = 317 bits (815), Expect = e-104
Identities = 128/409 (31%), Positives = 207/409 (50%), Gaps = 4/409 (0%)
Query: 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRP 129
QG +G S++ T + KD + P+ Q GL LP V+KP G+ +D F + GY RRP
Sbjct: 1 QGVAGGLSRLSTQFMLKDRLGIDPARYQRLSGLATLPWVIKPFTGVLSDGFALFGYRRRP 60
Query: 130 YFVIAGVAGCVSALMFSLLGKLP--IAIALACSVGISAGIAIADVVIDACIARNSIEIRA 187
Y ++G+ G AL + LL A+A A S G A+ DV+ DA + +
Sbjct: 61 YLALSGLLGGAFALSYGLLPAKESSAAVAAAFIFLSSLGKALVDVLSDALYSERGRQEPL 120
Query: 188 LAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSA 247
P + S CSA G +IG +SG ++ PQ + V A +L V V+ E
Sbjct: 121 AGPSLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAALQLLTCVDAAVLKEEEVL 180
Query: 248 N-IRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQ-FYWYTDPK 305
R ++ +K+ + P++ P+L A + + FY+ T+
Sbjct: 181 GLGRPPVPCLLGLNREVISRNWKAFRYPEILAPTLTWISFWAAPLVIAKADMFYYQTNEL 240
Query: 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFIL 365
GP FS F G + +G++A ++GV +Y++ LK +P R +L +SG+ DLI +
Sbjct: 241 GGPNFSYSFYGTVKVIGSIAGLLGVTLYNRFLKKHPYRLTFGVTTVLQVLSGLFDLILVK 300
Query: 366 RWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGS 425
RWN LGI D +++ + + ++ ++++P +VL RLCP G E T FALL I ++G
Sbjct: 301 RWNRYLGISDHVYILGDSIILEVLYMLKFMPFLVLLARLCPRGSESTVFALLASIANLGQ 360
Query: 426 LTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKAD 474
+ S G +++ L VT F+NL L++LI ++ L L L+ L+P +
Sbjct: 361 IVSSSLGALLMEYLGVTEDQFSNLPLLLLIGSLCTLLPLPLLGLLPPSA 409
|
Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters. One such protein, previously termed (and is still annotated as) ORFG, was shown to encode a biopterin transport protein using null mutants, thus being subsequently renamed BT1. The significant similarity of ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative transmembrane protein and another member of this family) was previously noted. This family also contains five putative Arabidopsis thaliana proteins of unknown function. In addition, it also contains two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). Length = 425 |
| >gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 3e-57
Identities = 118/442 (26%), Positives = 205/442 (46%), Gaps = 20/442 (4%)
Query: 43 PFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGL 102
PF + S + + V +G +G ++ D + + Q +GL
Sbjct: 12 PFLGYIPVFSFHPRVVLAIGLQVL-FVKGIAGLMRLPLS-PMLTDDLGLDGARYQRLVGL 69
Query: 103 CYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLP--IAIALACS 160
L +KP G+ +D FP+ GY +R Y V++G+ G SA+++ LL +A A
Sbjct: 70 SSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLG--SAILYGLLPGKVSSAKVAAAFI 127
Query: 161 VGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220
+ A+ DV++D+ + E + P + S SA G LI + G ++
Sbjct: 128 FLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLT 187
Query: 221 QGALGVLA-IPPVLLIVLGFV----------IYETRSANIRSEKKKVMENVEFTTKGMYK 269
+ + A + + L V I N+ V+ NV+ G+
Sbjct: 188 RILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRG 247
Query: 270 SMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIG 329
+++ ++ KP ++++LS A G + T F G+ +G + S+ G
Sbjct: 248 AIQLLEIAKPLIFIFLSYANLPGA-SGSVFCATTQCLP--GGPSFSGMSKVVGNLGSLCG 304
Query: 330 VLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHII 389
V Y + LK +P R L LLY +S + DLI + RWNLA GI D FV+ + ++ ++
Sbjct: 305 VGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVL 364
Query: 390 SKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNL 449
++++++P +VL RLCP G E + FALL I +GS S + G +++ + +T + NL
Sbjct: 365 AQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNL 424
Query: 450 WLVILIRNVLRLATLGLIFLVP 471
WL+IL ++ L L L+ L+P
Sbjct: 425 WLLILGHSLAPLLPLPLLHLLP 446
|
The Folate-Biopterin Transporter (FBT) Family (TC 2.A.71)The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity [Cell envelope, Other]. Length = 468 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 61/371 (16%), Positives = 117/371 (31%), Gaps = 30/371 (8%)
Query: 58 FIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPS-VMKPIWGLF 116
L + + + + P+ + + + L + +P+ G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDL-----GISPTEIGLLLTAFSLGYALAQPLAGRL 55
Query: 117 TDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDA 176
+D F RR +I + + L+ L + + L G+ G A
Sbjct: 56 SDRFG-----RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFP--AAAA 108
Query: 177 CIARN-SIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLI 235
IA E R A L G+ +G + G + G + A +LAI +L
Sbjct: 109 LIADWFPPEERGRA---LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAA 165
Query: 236 VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHE 295
VL ++ + K +K + P L++ L+L +
Sbjct: 166 VLAALLLPRPPPESKRPKPAEEAPAPLVP--AWKLLLRD----PVLWLLLALLLFGFAFF 219
Query: 296 GQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGI 355
+ + S GL+ L + IG L+ + R L A LL +
Sbjct: 220 ALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLIL 279
Query: 356 SGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFA 415
+ + L + +L + + ++ + + + + L + L P GT
Sbjct: 280 AALG-LALLSLTESSLWLLVALLLLG------FGAGLVFPALNALVSDLAPKEERGTASG 332
Query: 416 LLMCIDSIGSL 426
L S+G
Sbjct: 333 LYNTAGSLGGA 343
|
Length = 346 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 63/356 (17%), Positives = 131/356 (36%), Gaps = 49/356 (13%)
Query: 108 VMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVS-ALMFS----LLGKLPIAIALACSVG 162
PI G D + RP+ +I + +S L+F+ L + A +
Sbjct: 50 FTDPIVGAIIDRTRTRWGKFRPWLLIGAIPLAISLVLLFATPFGLSMTAKLIYAFITYIL 109
Query: 163 ISAGIAIADVVIDA---CIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG 219
+ ++ + + R+ E R + S + G L+ ++ V LG
Sbjct: 110 LGLAYTFVNIPYWSLIPVLTRDPKE-RT---SLASYRRIGATIGGLLVAVIAPPLVALLG 165
Query: 220 P-------QGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMK 272
A ++AI V+ ++ F + R + +K+KV + + M+K++
Sbjct: 166 GGNGAKGYFLAALIIAILAVVGFLICFAGTKERVSVPPEQKEKV------SLRDMFKALF 219
Query: 273 C--PQVWKPSLYMYLSLAVSISTHEGQFYW-YTDPKAGPAFSQEFVGLIYALGAVASMIG 329
P + LY+ +LA+++ +Y+ Y + ++ +G +A+++G
Sbjct: 220 KNRPLLILLLLYLLNALAMAVRNGLLLYYFTYV------LGNAGLFSVLLLIGTIAAILG 273
Query: 330 VLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHII 389
++ K + + LL I +L L F+ +L L F V+ ++ I
Sbjct: 274 APLWPWLAKRFGKKRTFLLGMLLAAIGLVL-LFFLPPGSLWL-----FLVLV--VLAGIG 325
Query: 390 SKIRWIPMIVLSTRLCPIG-------IEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438
+ + + + G EG F+L D +G G++L
Sbjct: 326 LGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLLAF 381
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 11/136 (8%)
Query: 108 VMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGI 167
+ + G +D F RR ++ + + +L+ + L + + +G+ G
Sbjct: 49 LGSLLAGYLSDRFG-----RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGL--GG 101
Query: 168 AIADVVIDACIARNSIE-IRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226
A IA R A L G+L+G + G LG + +
Sbjct: 102 GALYPAAAALIAEWFPPKERGRA---LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158
Query: 227 LAIPPVLLIVLGFVIY 242
LAI +LL +L +
Sbjct: 159 LAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 511 | |||
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 100.0 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 100.0 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.98 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.97 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.97 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.96 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.96 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.96 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.95 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.94 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.94 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.94 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.94 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.93 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.93 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.93 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.92 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.92 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.92 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.92 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.91 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.9 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.89 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.89 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.89 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.88 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.88 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.87 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.87 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.87 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.86 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.86 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.84 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.84 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.82 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.82 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.82 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.73 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.72 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.72 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.71 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.65 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.64 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.63 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.62 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.56 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 99.55 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.51 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.51 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.45 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.44 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.38 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.34 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.29 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.28 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.27 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.27 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.27 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.26 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.25 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.23 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.2 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.2 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.18 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.17 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.17 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.17 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.16 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.16 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.16 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.15 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.15 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.14 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.14 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.14 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.14 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.13 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.13 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.12 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.12 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.12 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.12 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.12 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.12 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.11 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.1 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.1 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.1 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.09 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.08 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.08 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.07 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.07 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.07 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.07 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.07 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.06 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.05 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.05 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.03 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.01 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.01 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.01 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.01 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.99 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.98 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.98 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.98 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.92 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.92 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.91 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.9 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.89 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.88 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.88 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.87 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.87 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.87 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.87 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.85 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.84 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.84 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.84 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.84 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.83 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.83 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.82 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.81 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.8 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.79 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.78 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.78 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.77 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.76 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.76 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.76 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.76 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.73 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.72 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.72 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.72 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.71 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.66 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.65 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.64 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.64 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.61 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.6 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.59 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.57 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.57 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.48 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.43 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.37 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.36 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.32 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.3 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.28 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.25 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.21 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.21 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.17 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.16 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.05 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.04 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.04 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.98 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.94 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.89 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.88 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.85 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.81 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.75 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.74 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.69 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.65 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.49 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.49 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.46 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.45 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.35 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.27 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.25 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.24 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.14 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.11 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.06 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.99 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.78 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.77 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.72 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.66 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.73 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 95.68 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.57 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.54 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.29 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.73 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.58 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 93.79 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.46 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.32 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.06 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 92.93 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.77 | |
| COG1288 | 481 | Predicted membrane protein [Function unknown] | 92.3 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 92.06 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 91.42 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.07 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 90.88 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 90.86 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 89.96 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 87.67 | |
| KOG4255 | 439 | consensus Uncharacterized conserved protein [Funct | 81.44 |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=326.00 Aligned_cols=407 Identities=34% Similarity=0.634 Sum_probs=340.0
Q ss_pred cccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 037870 71 GFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGK 150 (511)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~ 150 (511)
|+..++......+++++++|+++++...+.++..+||.++|++|.++|.++++|||||++++++.++..++...++..+.
T Consensus 2 G~~~~l~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~ 81 (433)
T PF03092_consen 2 GFAGGLSRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA 81 (433)
T ss_pred ChhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 44445666778888899999999999999999999999999999999999999999999999999998777777776554
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhh
Q 037870 151 --LPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLA 228 (511)
Q Consensus 151 --~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~ 228 (511)
.+...+.+..++..+|.+..++..++++.|..++++..|+..++..+....+|.+++..++|.+.+..+++..|.+.+
T Consensus 82 ~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 82 SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 233345667788999999999999999999998877669999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHhhcccccccccchh-----h---hhhhhhHHHHHHHHHHhccCCcchHHHH-HHHHHhhhccCcccc-ee
Q 037870 229 IPPVLLIVLGFVIYETRSANIRSE-----K---KKVMENVEFTTKGMYKSMKCPQVWKPSL-YMYLSLAVSISTHEG-QF 298 (511)
Q Consensus 229 ~~~~i~~~~~~~~~e~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~ 298 (511)
++..+..+..+++.|++...+..+ + +......++..++.++.++.|.+|...+ +.++.... ...... .+
T Consensus 162 ~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~a~~f 240 (433)
T PF03092_consen 162 ALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLP-PSISSASSF 240 (433)
T ss_pred HHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-cCCCCccEE
Confidence 887775544444444322211110 0 0111125667788999999999999888 56555543 333334 66
Q ss_pred eeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhh
Q 037870 299 YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFF 378 (511)
Q Consensus 299 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
||.++...++|+|+...|.+..++.++.++|..+..++..+++.|+++..+.++..+..+..+.+..++|..+|+++.++
T Consensus 241 y~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f 320 (433)
T PF03092_consen 241 YFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWF 320 (433)
T ss_pred EEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEE
Confidence 77766644667999999999999999999999999999999999999999888877766666667777787788999988
Q ss_pred hhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Q 037870 379 VITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNV 458 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~ 458 (511)
.++...+..+..++.++|...+++|++|++.+|+.+|+..++.|+|..++..++..+.+.++++.+++.+++.+++++.+
T Consensus 321 ~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~ 400 (433)
T PF03092_consen 321 ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSV 400 (433)
T ss_pred EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHHhhcCCCCcCcC
Q 037870 459 LRLATLGLIFLVPKADQSDE 478 (511)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~ 478 (511)
+.+++++++.++|++++..+
T Consensus 401 ~~ll~l~ll~lLp~~~~~~~ 420 (433)
T PF03092_consen 401 IQLLPLPLLFLLPPQKRITD 420 (433)
T ss_pred HHHHHHHHHHHcCCCchhhH
Confidence 99999999999998766544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=318.06 Aligned_cols=411 Identities=26% Similarity=0.414 Sum_probs=324.1
Q ss_pred CchhH-HHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhcccccCCCCCchHHHH
Q 037870 55 NSTFI-FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVI 133 (511)
Q Consensus 55 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~~~~g~~Rr~~l~~ 133 (511)
+++.. ..+...| +.+|+. ++....+++++++++|+|+++++.+.++..+|+.++|+||+++||++++|||||+++++
T Consensus 23 ~~~~~~~~~~~~y-~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~ 100 (468)
T TIGR00788 23 HPRVVLAIGLQVL-FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVL 100 (468)
T ss_pred CcchHHHHHHHHH-HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHH
Confidence 34443 3444467 999999 88888999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHH
Q 037870 134 AGVAGC-VSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSG 212 (511)
Q Consensus 134 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g 212 (511)
+.++.. ++...++..++. .......+++.+++.+..+++.+++..|..+++++.++..++..+...++|.++|+.++|
T Consensus 101 ~~~l~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G 179 (468)
T TIGR00788 101 SGLLGSAILYGLLPGKVSS-AKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGG 179 (468)
T ss_pred HHHHHHHHHHHhcccccch-HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 887763 444444433332 223444678899999999999999999998755566777888777888899999999999
Q ss_pred HhhccCChhhHHHHhhhHHHHHHHHHhhcccccc-cccc-hhh---------hhhhhhHHHHHHHHHHhccCCcchHHHH
Q 037870 213 FSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRS-ANIR-SEK---------KKVMENVEFTTKGMYKSMKCPQVWKPSL 281 (511)
Q Consensus 213 ~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~-~~~~-~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (511)
.+.+.++|+..|++.+++.++..+..++++|++. ..++ .++ ....+..++..++.++.+++|.++..++
T Consensus 180 ~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~ 259 (468)
T TIGR00788 180 PLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLI 259 (468)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 9999999999999998887776666677888642 1111 000 0001122334556777889999998888
Q ss_pred HHHH-HhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhh
Q 037870 282 YMYL-SLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLD 360 (511)
Q Consensus 282 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~ 360 (511)
+.++ ... ........+++.+. ..|+++.+.|.+....+++.+++..+.+++.+|++.|+++.++.++..+..+..
T Consensus 260 fifl~~~~-~~~~~~~~f~~~~~---~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~ 335 (468)
T TIGR00788 260 FIFLSYAN-LPGASGSVFCATTQ---CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFD 335 (468)
T ss_pred HHHHHHhh-cCCCCceeEEEEcc---cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCc
Confidence 7777 332 23333333333333 389999999999988999999999999999999999999999877777654443
Q ss_pred HHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 361 LIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
..+...++...+.++.+++++...+.++..++.++|...++++.+|++.+|+.+|+.+++.++|..+++.++|.+.+.+|
T Consensus 336 ~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 336 LILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred eeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333444444455555666667788899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHHHHhhcCC
Q 037870 441 VTRTDFTNLWLVILIRNVLRLATLGLIFLVPK 472 (511)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
.+.++++.++.+.+++.++.++++.++.++|+
T Consensus 416 ~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 416 ITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999997
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=252.37 Aligned_cols=368 Identities=17% Similarity=0.106 Sum_probs=273.8
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHH
Q 037870 59 IFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVA 137 (511)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~ 137 (511)
++++..+. |..+....+....+|++.+| +|+|..+.|+..+.|.++..+ .|+...+.||+ .||++++....+
T Consensus 15 l~aLa~~~-F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-----~Rr~lLl~~l~l 87 (394)
T COG2814 15 LLALALAA-FAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRL-----ERRRLLLGLLAL 87 (394)
T ss_pred HHHHHHHH-HHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----chHHHHHHHHHH
Confidence 34455544 67777777777788888776 999999999999999999988 99999999996 789999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037870 138 GCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH 217 (511)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~ 217 (511)
+.++.+++++++|+.. +++.|++.++..+.......+...++. +|++|++++++...+..++.++|.++|.++.+.
T Consensus 88 Fi~~n~l~alAp~f~~--Ll~aR~~~g~a~G~f~~i~~~~a~~lv--pp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~ 163 (394)
T COG2814 88 FIVSNLLSALAPSFAV--LLLARALAGLAHGVFWSIAAALAARLV--PPGKRGRALALVFTGLTLATVLGVPLGTFLGQL 163 (394)
T ss_pred HHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc--CccchhhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998765 788899999999999999999999998 456699999999999999999999999999999
Q ss_pred CChhhHHHHhhhHHHH-HHHHHhhcc-cccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCccc
Q 037870 218 LGPQGALGVLAIPPVL-LIVLGFVIY-ETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHE 295 (511)
Q Consensus 218 ~gw~~~f~~~~~~~~i-~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 295 (511)
+|||.+|+..++++++ .+..+..+| .+..+..+ ...++..+.+|+|+++..++..++.....+..++
T Consensus 164 ~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~-----------~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ft 232 (394)
T COG2814 164 FGWRATFLAIAVLALLALLLLWKLLPPSEISGSLP-----------GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYT 232 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCC-----------cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHH
Confidence 9999999999999888 455677788 11111110 1224567889999999888877776655544333
Q ss_pred ceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCc
Q 037870 296 GQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPD 375 (511)
Q Consensus 296 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (511)
.+-.+..+ ..|+|.+.++++...++++.++|..+.||+.|| +.|+.+.....+..+..+...... ..
T Consensus 233 Yi~P~L~~---v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~---------~~ 299 (394)
T COG2814 233 YIRPFLES---VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG---------AS 299 (394)
T ss_pred hHHHHHHH---ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc---------ch
Confidence 22223333 379999999999999999999999999999999 777777766555544322211111 11
Q ss_pred hhhhhHHHHHHHHHHHhhHhHHHHHHhhcCC--CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHH
Q 037870 376 SFFVITEQCVSHIISKIRWIPMIVLSTRLCP--IGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVI 453 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~ 453 (511)
.+..+....+.++... +..+....+..+ ++.+..+.+++....|+|..+|..++|.+.+++|+. ...
T Consensus 300 ~~~~~~~~~~wg~a~~---~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~--------~~~ 368 (394)
T COG2814 300 PALALALLFLWGFAFS---PALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYA--------ATG 368 (394)
T ss_pred HHHHHHHHHHHHHHhh---hhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--------HHH
Confidence 1222222222222222 222333333333 588899999999999999999999999999987754 233
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 037870 454 LIRNVLRLATLGLIFLVPK 472 (511)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (511)
.++++..+++..+.....+
T Consensus 369 ~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 369 WVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455555555555544333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=260.94 Aligned_cols=386 Identities=15% Similarity=0.162 Sum_probs=268.9
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhccc--ccCCCCCchHHHHHHH
Q 037870 59 IFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAF--PIKGYHRRPYFVIAGV 136 (511)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~--~~~g~~Rr~~l~~~~~ 136 (511)
.+.+...+ +.++....+....+|.++++ .|.|..++|.. +....++..+++||+++||+ +++| |||++++.+.+
T Consensus 14 ~~~~~~l~-~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~-~~~~~~~~~~~l~gpl~Dr~~~~~~G-rrr~~ll~~~i 89 (491)
T PRK11010 14 SAILLILG-FASGLPLALTSGTLQAWMTV-ENIDLKTIGFF-SLVGQAYVFKFLWSPLMDRYTPPFLG-RRRGWLLATQL 89 (491)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCC-CchHHHHHHHH
Confidence 34555566 77888888888889999887 79999999986 55666676799999999997 3445 77778888888
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037870 137 AGCVSALMFSLLGK-LPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSV 215 (511)
Q Consensus 137 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~ 215 (511)
..+++...+++.++ .+...+...+++.+++.+..++..+++..|+.+ +++|++..++...+..+|.++++.+++++.
T Consensus 90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~--~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLP--AEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777543 234445666778899999999999999999984 456999999999999999999999999999
Q ss_pred c-cCChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcc
Q 037870 216 N-HLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTH 294 (511)
Q Consensus 216 ~-~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 294 (511)
+ ..|||.+|++.++..++..+..++.||+++..+++ ++..+ ....++++.++++..|...+..++.........
T Consensus 168 ~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~ 242 (491)
T PRK11010 168 DRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVP--KTLEQ---AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAM 242 (491)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHhcCCCccccccc--cchhh---hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence 8 57999999999887776655555677764321111 10001 112345566777777665544433332221111
Q ss_pred cceeeeeecCCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCC
Q 037870 295 EGQFYWYTDPKAGPAFSQEFVGLIY-ALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGI 373 (511)
Q Consensus 295 ~~~~~~~~~~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (511)
...++|..+. .|++..+.|.+. ....++.++|.++.|++.||+++|+.+..+.++..+..+....+.. ..
T Consensus 243 ~~~~~~l~~~---~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~------~~ 313 (491)
T PRK11010 243 SLTTTFLIRG---VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI------TD 313 (491)
T ss_pred HHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------cc
Confidence 1222232222 689999999987 5677899999999999999999988776654443332222111111 01
Q ss_pred CchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHH
Q 037870 374 PDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVI 453 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~ 453 (511)
++.+.......+..++.++......+...+.++++..++.+|+.++..++|..+++.+.|.+.+.+|+. ..+
T Consensus 314 ~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~--------~~f 385 (491)
T PRK11010 314 KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWP--------TFY 385 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHH
Confidence 122222222334445556666666778889999999999999999999999999999999999987632 345
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 037870 454 LIRNVLRLATLGLIFLVPK 472 (511)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (511)
.+..++.+.+++...++++
T Consensus 386 ~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 386 LFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555666666665555544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-30 Score=251.48 Aligned_cols=384 Identities=14% Similarity=0.142 Sum_probs=261.4
Q ss_pred HHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhcccc--cCCCCCchHHHHHHHHHH
Q 037870 62 IILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFP--IKGYHRRPYFVIAGVAGC 139 (511)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~~--~~g~~Rr~~l~~~~~~~~ 139 (511)
....| +.|++..++....+|.|+++ .|+|.+++|++..+ ..++.++|+||+++||++ .+| |||++++.+.++.+
T Consensus 4 ~~~l~-~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~-~~~~~~~~l~g~~~Dr~~~~~~g-~rr~~l~~~~~~~~ 79 (402)
T PRK11902 4 MLLLG-FASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLV-GQAYIFKFLWAPLMDRYTPPLLG-RRRGWLLLTQVGLA 79 (402)
T ss_pred HHHHH-HHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHH-HHHHHHHHHHHHHHHcccccCCC-cchhHHHHHHHHHH
Confidence 45567 88999999999999999998 79999999998544 446777999999999982 224 67778999888888
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 037870 140 VSALMFSLLGK-LPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH- 217 (511)
Q Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~- 217 (511)
++..++++.++ ...+.+....++.++..+..+++.++++.|..+ +++|+++.++...+.++|.++++.+++.+.+.
T Consensus 80 l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~ 157 (402)
T PRK11902 80 ASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLH--PEERGAGAAVKVLGYRLAMLVSGGLALWLADRV 157 (402)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 88888777643 233334555556678888899999999999974 45699999999999999999999999999885
Q ss_pred CChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccce
Q 037870 218 LGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQ 297 (511)
Q Consensus 218 ~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (511)
.|||..|++.++..++..+..++.||++.++.++ ++.. ++..++.++++|||.++..++..++............
T Consensus 158 ~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~--~~~~---~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~ 232 (402)
T PRK11902 158 LGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPP--RSLG---EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLS 232 (402)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCccccccc--chhH---HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHH
Confidence 5999999998887766555556677664432211 1100 1122456678889988776655444332111111111
Q ss_pred eeeeecCCCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCch
Q 037870 298 FYWYTDPKAGPAFSQEFVGLIYA-LGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDS 376 (511)
Q Consensus 298 ~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (511)
.++..+. .|+++.++|++.. ...++.+++..+.+++.||+++|+.+..+..+..+..+....... ..++.
T Consensus 233 ~~~l~~~---~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~------~~~~~ 303 (402)
T PRK11902 233 TTFLIRG---AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV------TPKHL 303 (402)
T ss_pred HHHHHHh---cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh------cCCcH
Confidence 1222222 6899999998874 445678999999999999999988877665544432222211111 01122
Q ss_pred hhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHH
Q 037870 377 FFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIR 456 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~ 456 (511)
+..+....+..+..++...........+++++..++.+++.++..+++..+++.++|.+.|.+|+. ..+.+.
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~--------~~f~~~ 375 (402)
T PRK11902 304 WTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWP--------GFYLMT 375 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHHH
Confidence 222222233334555555555565666666666677778888888888888888999999998743 345555
Q ss_pred HHHHHHHHHHHhhcCCC
Q 037870 457 NVLRLATLGLIFLVPKA 473 (511)
Q Consensus 457 ~~~~~~~~~~~~~~~~~ 473 (511)
++++++++++....+++
T Consensus 376 ~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 376 VVIALPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 56666666655555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=250.20 Aligned_cols=349 Identities=16% Similarity=0.090 Sum_probs=243.1
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
.....+|.+.+ ++|.|+.+.|++.+.+.+++.+ ++++|+++||+ +||+++..+.++.+++++.++++++.+.
T Consensus 27 ~~~~~~~~l~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~- 99 (390)
T PRK03545 27 VPVGLLSDIAQ-SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-----ERRKLLIGLFVLFIASHVLSALAWNFTV- 99 (390)
T ss_pred HHHcchHHHHh-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHHHHHhccHHH-
Confidence 33344666555 4999999999999999999877 88999999996 6888999999999999999999886554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLL 234 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~ 234 (511)
+++.|++++++.+...+...+++.+..+ +++|++++++...+.++|..+||++++.+.+++|||+.|++.+++.++.
T Consensus 100 -l~~~r~~~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~ 176 (390)
T PRK03545 100 -LLISRIGIAFAHAIFWSITASLAIRVAP--AGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALIT 176 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhCC--hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 5677888999888888888888888874 4569999999999999999999999999999999999999998877764
Q ss_pred H-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChh
Q 037870 235 I-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQE 313 (511)
Q Consensus 235 ~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 313 (511)
. .....+||++++++ +..++.++.+|+|.++......++............+.+..+. .|+++.
T Consensus 177 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g~s~~ 241 (390)
T PRK03545 177 LLLLIKLLPLLPSEHS------------GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV---AGLSEN 241 (390)
T ss_pred HHHHHHhCCCCCCCCc------------chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCcc
Confidence 3 34444565432211 0113455678888876554433332222221111222222232 588888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhh
Q 037870 314 FVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIR 393 (511)
Q Consensus 314 ~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
+.+.+.....++.+++.++.+++.||+++|.+.... .+........ ... .++.+.......+.++.....
T Consensus 242 ~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~-~~~~~~~~~l--~~~-------~~~~~~~~~~~~l~g~~~~~~ 311 (390)
T PRK03545 242 FATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAI-ALLLVCLLLL--LPA-------ANSEWHLSVLSIFWGIAIMCI 311 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHH--HHH-------hchHHHHHHHHHHHHHHHhcc
Confidence 999988888899999999999999999877654332 2222211111 111 111222222233444443333
Q ss_pred HhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHh
Q 037870 394 WIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIF 468 (511)
Q Consensus 394 ~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (511)
.+.....+.+..| +.+|+++|+++...++|..+|+.++|.+.+.+|++ ..+.+.+++.+++++...
T Consensus 312 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~--------~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 312 GLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS--------SIGYVGAALALAALVWSI 377 (390)
T ss_pred hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--------HHHHHHHHHHHHHHHHHH
Confidence 3445566667776 68899999999999999999999999999987754 234444455555555444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=253.36 Aligned_cols=390 Identities=14% Similarity=0.148 Sum_probs=262.0
Q ss_pred cchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccc-cCCCCCchHHHHHHHHHHHHHHHHHhcCChh
Q 037870 75 SFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFP-IKGYHRRPYFVIAGVAGCVSALMFSLLGKLP 152 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~-~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~ 152 (511)
.+....+++++++++|+++.++|++.++..+..++ +|+.|+++||.+ ++| ||||+++.+.+..+++.+++...++.+
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G-rrr~~i~~~~~~~~i~~~~~~~~~~~~ 94 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG-KFRPWLLIGAIPFSIVLVLLFTTPDFS 94 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC-CcchhHHHhHHHHHHHHHHHHhCCCCC
Confidence 44455677788888999999999999999999888 999999999984 556 889999999888888888877766432
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc-------cCChh
Q 037870 153 ----IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN-------HLGPQ 221 (511)
Q Consensus 153 ----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~-------~~gw~ 221 (511)
...+++.+++.+++.+...++..++..+..+ ++++|++..++.+.+..+|.++++.+.+.+.. ..+||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~-~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 95 ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITL-DPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 2334555666677777777777888888764 34668999998888888888887777666542 46899
Q ss_pred hHHHHhhhHHHHH-HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeee
Q 037870 222 GALGVLAIPPVLL-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYW 300 (511)
Q Consensus 222 ~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
+.+++.+++.++. .+..+..||++.+.++. ++.+.+. .+.++..+++|.++..++..++............+++
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKERYSEIPKN--IEKKLSL---KQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY 248 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEecCCCCCcc--cccCCCH---HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee
Confidence 9999988887774 44556677765321111 1111112 2345567788988777665555444332222233445
Q ss_pred eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhh
Q 037870 301 YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 380 (511)
Q Consensus 301 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (511)
.... .+ ++...+.+.....++.+++.++.+++.||+++|+.+..+..+..+..+... +.. .+.+..+
T Consensus 249 ~~~~---~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~ 315 (437)
T TIGR00792 249 FTYV---LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF-FAG--------SNLPLIL 315 (437)
T ss_pred Eeee---cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-Hcc--------hhHHHHH
Confidence 4443 34 455667666777899999999999999999999988877655554322211 110 1112222
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhcCC-------CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccc-----
Q 037870 381 TEQCVSHIISKIRWIPMIVLSTRLCP-------IGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTN----- 448 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~----- 448 (511)
....+.++..+...+...++.+|.+| ++.+|+++|+.+...++|..+++.+.|.+.+..|+..+.-+.
T Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~ 395 (437)
T TIGR00792 316 VLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLN 395 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHH
Confidence 23334455556666666677777654 567899999999999999999999999999998886432121
Q ss_pred -h-HHHHHHHHHHHHHHHHHHh-hcCCCCcCcCccchhh
Q 037870 449 -L-WLVILIRNVLRLATLGLIF-LVPKADQSDELIPVDL 484 (511)
Q Consensus 449 -~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 484 (511)
. .....+.+++.+++++++. ..|.+|++.++..+|+
T Consensus 396 ~~~~~~~~~p~i~~~~~~~~~~~~y~l~~~~~~~i~~~l 434 (437)
T TIGR00792 396 GIKILMFAVPALFLLLAAIIIGRFYKLTEKKHAEIVEEL 434 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHeeCcHHHHHHHHHHH
Confidence 1 1223344455566666665 6666555444343433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=239.35 Aligned_cols=370 Identities=12% Similarity=0.073 Sum_probs=268.2
Q ss_pred HHHHhccCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCC
Q 037870 48 QMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYH 126 (511)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~ 126 (511)
+...++++++++..+.+.| ....+..--++.+.|.+.++ .++|.+|.|++.+++.+.|.+ +.++|.++||. +
T Consensus 20 ~~~y~~~r~qif~~~fiGY-a~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-----n 92 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGY-AAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-----N 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-----C
Confidence 4445666777888899999 44444444557788887666 889999999999999999999 99999999996 5
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHH
Q 037870 127 RRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLI 206 (511)
Q Consensus 127 Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~l 206 (511)
-|.++..+.+++++..+++++++ +...+.++.++.|...+...+++...+..+. +++|||+..++++.+.|+|..+
T Consensus 93 pr~fm~~gLilsai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf--sr~eRG~~~siWn~shNiGGal 168 (448)
T COG2271 93 PRYFMAFGLILSAIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWF--SRKERGTWWSIWNTSHNIGGAL 168 (448)
T ss_pred CceeehHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHc--CccccCceEEEehhhhhcccch
Confidence 67789999999999999999988 4445677778888888888888888888887 4577999999999999999999
Q ss_pred HHHHH--HHhhccCChhhHHHHhhhHHHHH-HHHHhhcccccccccch--h-------h--hhhhhh--HHHHHHHHHHh
Q 037870 207 GYAVS--GFSVNHLGPQGALGVLAIPPVLL-IVLGFVIYETRSANIRS--E-------K--KKVMEN--VEFTTKGMYKS 270 (511)
Q Consensus 207 g~~~~--g~l~~~~gw~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~--~-------~--~~~~~~--~~~~~~~~~~~ 270 (511)
.|++. +++..+.+||..|++.+++.+++ ++.++..+++|++..-. + + +++.++ ......-.+.+
T Consensus 169 ~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YV 248 (448)
T COG2271 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYV 248 (448)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHH
Confidence 99999 89999999999999999998885 45666677766432110 0 0 000000 11111234568
Q ss_pred ccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC--CChHHHHH
Q 037870 271 MKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY--PLRNLLFS 348 (511)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~l~~ 348 (511)
++||.+|.+.+..++....-++.....+.|..+. .|+|....+...+..-++++.|.++.|+++||. |+|....+
T Consensus 249 L~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~---k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~ 325 (448)
T COG2271 249 LKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV---KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL 325 (448)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---cCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence 8999999887766665554455544455555444 699999999999999999999999999999996 56655554
Q ss_pred HHHHHHHhhhhhHHHhhhcccccCCC-chhhhhHHHHHHHHHHHhhHhHH---HHHHhhcCCCcchHHHHHHHHHHHHH-
Q 037870 349 AQLLYGISGMLDLIFILRWNLALGIP-DSFFVITEQCVSHIISKIRWIPM---IVLSTRLCPIGIEGTFFALLMCIDSI- 423 (511)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~g~~~gl~~~~~~l- 423 (511)
.+.+....++..... ... +.++..+.. ...+.+.+.|. -....|.+|++..|++.|+.+.+..+
T Consensus 326 i~~~~i~~~~~~~w~--------~~~~~~~l~~~~l---~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~ 394 (448)
T COG2271 326 IFMLLITASLVLYWL--------APNGSYLLDAILL---FIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLI 394 (448)
T ss_pred HHHHHHHHHHHHHHc--------CCCccHHHHHHHH---HHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHh
Confidence 443333322222111 111 112222211 11222233333 23456999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhccC
Q 037870 424 GSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 424 g~~~g~~l~g~l~~~~g~~ 442 (511)
|.+.+....|++.|.+|+.
T Consensus 395 Ga~~a~~~~g~i~d~~gW~ 413 (448)
T COG2271 395 GAALAGLPLGYIADTWGWD 413 (448)
T ss_pred hHHhcCCcceeeEecCCCc
Confidence 8899999999998876543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-29 Score=245.94 Aligned_cols=370 Identities=12% Similarity=0.019 Sum_probs=248.1
Q ss_pred cccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh---c
Q 037870 73 SGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL---L 148 (511)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~---~ 148 (511)
...+....+|.+.++ ++.++.+.|++.+...+++.+ +++.|+++||+ +||+.++.+.++.+++...++. .
T Consensus 32 ~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~ 105 (417)
T PRK10489 32 GLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-----DRKKLILLARGTCGLGFIGLALNAFL 105 (417)
T ss_pred HHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-----CCceEEEehHHHHHHHHHHHHHHHHc
Confidence 334556677777766 888999999999999999887 99999999996 5677777776666665554432 2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhh
Q 037870 149 GKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLA 228 (511)
Q Consensus 149 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~ 228 (511)
.+.....+++.+++.+++.+...+...+++.+..+ +++|+++.++.+...++|..+||.++|.+.+..+|++.|++.+
T Consensus 106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVG--RENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 22233445667888888888777777788888774 3558899999999999999999999999999889999999887
Q ss_pred hHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCC
Q 037870 229 IPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGP 308 (511)
Q Consensus 229 ~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
+..++..+..+.+||.++++.+. ++ ..++..+..+..+++|.++...+..++... ........+.+..+. .
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~---~ 254 (417)
T PRK10489 184 AGTFITLLPLLRLPALPPPPQPR--EH---PLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEV---W 254 (417)
T ss_pred HHHHHHHHHHHhCCCCCCCCccc--cc---chHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc---c
Confidence 77666555556677654332111 11 111222334556777776655444333222 112222223333332 6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHH
Q 037870 309 AFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 388 (511)
Q Consensus 309 g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
|+++...|++.....++.+++.++.+++.||.++++.+..+.++..+..+ .+.. .++.+......++.++
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~g~ 324 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVG---LFGL-------MPMWILAVLCLALFGY 324 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHH---HHHc-------cchHHHHHHHHHHHHH
Confidence 88899999998888999999999999999987777666665444433211 1111 1222222223334444
Q ss_pred HHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHh
Q 037870 389 ISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIF 468 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (511)
..+...+...+++.+..|++.||+++|+++...++|..+|+.+.|.+.+.+|... .....+.+..+++++...
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~-------~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVA-------SASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHHHHHHH
Confidence 4454445556778899999999999999999999999999999999999876431 222333344444555555
Q ss_pred hcCCCCcC
Q 037870 469 LVPKADQS 476 (511)
Q Consensus 469 ~~~~~~~~ 476 (511)
.+++.+++
T Consensus 398 ~~~~~~~~ 405 (417)
T PRK10489 398 VLGELRRF 405 (417)
T ss_pred hccccccc
Confidence 66665543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=248.70 Aligned_cols=361 Identities=12% Similarity=0.043 Sum_probs=233.3
Q ss_pred HHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHH
Q 037870 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAG 138 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~ 138 (511)
+...+.+ +...+........+|.+.++ +|+|..+.|++.+.+.+++.+ +++.|+++||+ +||+++.++.++.
T Consensus 26 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~~~~~~~~~ 98 (434)
T PRK11663 26 ITMYLGY-ALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-----NARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHH-HHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-----CCchhHHHHHHHH
Confidence 3344444 33333333445677877666 999999999999999999887 99999999996 6788889999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 037870 139 CVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL 218 (511)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~ 218 (511)
.++.++++++++.. .+++.+++.+++.+...+...+++.+..+ +++|++++++.+.+.++|.++++.+++++.+.+
T Consensus 99 ~~~~~~~~~~~~~~--~l~~~~~l~g~~~g~~~~~~~~~~~~~~~--~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 174 (434)
T PRK11663 99 GIINILFGFSSSLW--AFALLWVLNAFFQGWGWPVCAKLLTAWYS--RTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174 (434)
T ss_pred HHHHHHHHHHhHHH--HHHHHHHHHHHHHHccchHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99988888887644 35566777788777777777788888874 356999999999999999999999999999999
Q ss_pred ChhhHHHHhhhHHHHH-HHHHhhccccccccc--c-----hh-hhhhhhh--HHHHHHHH--HHhccCCcchHHHHHHHH
Q 037870 219 GPQGALGVLAIPPVLL-IVLGFVIYETRSANI--R-----SE-KKKVMEN--VEFTTKGM--YKSMKCPQVWKPSLYMYL 285 (511)
Q Consensus 219 gw~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~--~-----~~-~~~~~~~--~~~~~~~~--~~~l~~~~~~~~~~~~~~ 285 (511)
|||+.|++.+++.++. .+..++++|++.+.. + .+ ++...++ .+...++. ...+++|.+|...+..++
T Consensus 175 gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
T PRK11663 175 GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVL 254 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHH
Confidence 9999999988776653 344455676543210 0 00 0000000 00011121 125677877766554443
Q ss_pred HhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHhhhhhHHH
Q 037870 286 SLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY--PLRNLLFSAQLLYGISGMLDLIF 363 (511)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~l~~~~~~~~~~~~~~~~~ 363 (511)
............+.+..+. .|++..+.+.......++.+++.++.|++.||+ ++|+.......+........+..
T Consensus 255 ~~~~~~~~~~~~p~~l~~~---~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~ 331 (434)
T PRK11663 255 VYVVRAAINDWGNLYMSET---LGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL 331 (434)
T ss_pred HHHHHHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH
Confidence 3322222222223333222 689999999888888899999999999999998 33333222111111111111111
Q ss_pred hhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 364 ILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
.. ..............++..............|..|++++|++.|+.++..++|..++|.+.|++.|..|+
T Consensus 332 ~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~ 402 (434)
T PRK11663 332 MP-------FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHW 402 (434)
T ss_pred cc-------cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhccc
Confidence 11 111111111111112111111112234557889999999999999999999999999999999997663
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=245.42 Aligned_cols=360 Identities=14% Similarity=0.069 Sum_probs=253.6
Q ss_pred HHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHH
Q 037870 62 IILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCV 140 (511)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~ 140 (511)
+...+ +...+.......++|.+.++ +|.++.+.+++.+.+.++..+ .|++|+++||+ +||+.++.+.++..+
T Consensus 15 ~~~~~-~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 15 VAFGF-FMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-----GVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHH-HHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHH
Confidence 33444 55555666667788888776 999999999999999888776 89999999996 677788888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 037870 141 SALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220 (511)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw 220 (511)
+.+.++++++.. .+++.+++++++.+...+...+++.+..+ +++|++..++.....++|..+||.++|.+.++.||
T Consensus 88 ~~~~~~~~~~~~--~l~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw 163 (471)
T PRK10504 88 GSLFCALSGTLN--ELLLARVLQGVGGAMMVPVGRLTVMKIVP--REQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASW 163 (471)
T ss_pred HHHHHHHhCCHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccH
Confidence 888777777544 35677899999999888888888888874 35589999999999999999999999999999999
Q ss_pred hhHHHHhhhHHHHHH-HHHhhcccccccccchhhh----------------hhhh----h---H----------------
Q 037870 221 QGALGVLAIPPVLLI-VLGFVIYETRSANIRSEKK----------------KVME----N---V---------------- 260 (511)
Q Consensus 221 ~~~f~~~~~~~~i~~-~~~~~~~e~~~~~~~~~~~----------------~~~~----~---~---------------- 260 (511)
|+.|++......+.. +.....|+.+....+.+.. +..+ . .
T Consensus 164 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (471)
T PRK10504 164 HWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLL 243 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999876665533 3334444432211110000 0000 0 0
Q ss_pred HHHH----HHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 037870 261 EFTT----KGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKT 336 (511)
Q Consensus 261 ~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l 336 (511)
++.. ....+++|||.++..++..++............++|.+.. .|.++.+.+++.....++.+++..+.+++
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 320 (471)
T PRK10504 244 HARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG---LGFSPFHAGLMMIPMVLGSMGMKRIVVQV 320 (471)
T ss_pred HHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0012467788877766655554433222222344454443 68899999988888888888888999999
Q ss_pred hccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHH
Q 037870 337 LKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFAL 416 (511)
Q Consensus 337 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl 416 (511)
.||+++|+++..+..+..+..+....... ....+.......+.++..+....+...+..+.+|++.+|+.+|+
T Consensus 321 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 393 (471)
T PRK10504 321 VNRFGYRRVLVATTLGLALVSLLFMLVAL-------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSL 393 (471)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHhccc-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHH
Confidence 99999999988776655543222211100 11111112223344556666677777888899999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 417 LMCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 417 ~~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
.++..++|..+|+.++|.+.+..|+.
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999988764
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=237.46 Aligned_cols=363 Identities=12% Similarity=0.065 Sum_probs=236.5
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..++..+...+.+|.++++++|.|..++|++.+++.+...+ +|++|+++||++ |||++++.+.+...++.++++
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g----~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQG----DRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CchHHHHHHHHHHHHHHHHHH
Confidence 444555556667788888877999999999999999887665 999999999962 455555556666666777777
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccc--hHHHHHHHHHHHHHHHHHHHHHhhccCChhhHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPD--MQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGAL 224 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f 224 (511)
++++... +++.+++.+.+.+...+...++..|..++ ++|++ ..+....+.++|.++||.+++.+.+.+|||+.|
T Consensus 83 ~~~~~~~--l~~~~~~~g~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f 158 (375)
T TIGR00899 83 WNRNYFL--LLVLGVLLSSFASTANPQLFALAREHADR--TGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMF 158 (375)
T ss_pred hcchHHH--HHHHHHHHHhhhhhhHHHHHHHHHHHhhh--cchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHH
Confidence 7776443 44556666665555666667777776533 22333 357777888999999999999999999999999
Q ss_pred HHhhhHHHHHH-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeec
Q 037870 225 GVLAIPPVLLI-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTD 303 (511)
Q Consensus 225 ~~~~~~~~i~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (511)
++.++..++.. +.++++||++++..+++ + ..+.++.+++|.++...+..++............+.+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (375)
T TIGR00899 159 LTAALAFVLCGVLVWLFLPSYPRGAPGAL-T---------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIH 228 (375)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCccccc-C---------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99988776644 44555787554322110 0 0122335566766554433333222111111222333322
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHH
Q 037870 304 PKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQ 383 (511)
Q Consensus 304 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (511)
. .|.++.+.|.+.....+..+++..+.+++.||+++|+.+..+.++..+.. ...... ++.+..+...
T Consensus 229 ~---~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~ 295 (375)
T TIGR00899 229 E---LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFY---TGLAAD-------NSLWALLMLQ 295 (375)
T ss_pred H---cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHHH
Confidence 2 68889899988777667778888899999999999998877654433211 111110 1112222233
Q ss_pred HHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Q 037870 384 CVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLAT 463 (511)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 463 (511)
.+.++..+...+.......|..|+ ++++++|+.+...++|..++|.++|.+.+..|++ ..+.+.+++.+++
T Consensus 296 ~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~--------~~~~~~~~~~~~~ 366 (375)
T TIGR00899 296 LLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYH--------AVYWFAIVMLIVA 366 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------hHHHHHHHHHHHH
Confidence 344555555555566677788875 5679999999999999999999999999876633 2344455555555
Q ss_pred HHHHhhc
Q 037870 464 LGLIFLV 470 (511)
Q Consensus 464 ~~~~~~~ 470 (511)
.+...++
T Consensus 367 ~~~~~~~ 373 (375)
T TIGR00899 367 LFCLLLI 373 (375)
T ss_pred HHHHhee
Confidence 5555444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=251.19 Aligned_cols=394 Identities=15% Similarity=0.082 Sum_probs=255.5
Q ss_pred ccCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHH
Q 037870 53 QLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYF 131 (511)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l 131 (511)
.++|.+++.+.+++ +..++........+|.+.++ +|++..+.+++.+++.++.++ .+++|+++||+ +||+.+
T Consensus 163 ~~~~~l~~i~~l~~-~~~g~d~~~is~ilp~i~~~-~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-----GRR~~l 235 (742)
T TIGR01299 163 RFQWALFFVLGLAL-MADGVEVFVVGFVLPSAEKD-LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-----GRKQCL 235 (742)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHH
Confidence 34555555555555 55566555566677776555 999999999999999999888 89999999996 688888
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHH
Q 037870 132 VIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVS 211 (511)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~ 211 (511)
+++.++.+++.+++++++++. .+++++++.|++.+...+...+++.|..+ ++.|++..++...+..+|.++++.++
T Consensus 236 ii~lil~~i~~ll~afa~s~~--~llv~R~l~G~g~g~~~p~~~~~isE~~p--~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 236 LICLSVNGFFAFFSSFVQGYG--FFLFCRLLSGFGIGGAIPIVFSYFAEFLA--QEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887644 46778999999999999999999999984 45699999999999999999999888
Q ss_pred HHhhcc-------------CChhhHHHHhhhHHHHHHHHHhhcccccccccch---hh-h-----------h----hhh-
Q 037870 212 GFSVNH-------------LGPQGALGVLAIPPVLLIVLGFVIYETRSANIRS---EK-K-----------K----VME- 258 (511)
Q Consensus 212 g~l~~~-------------~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~---~~-~-----------~----~~~- 258 (511)
..+... .+||+.+++.+++.++.++..+++||+++..... ++ . + ..+
T Consensus 312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~ 391 (742)
T TIGR01299 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKV 391 (742)
T ss_pred HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHH
Confidence 776543 3689999888877777677778899987542110 00 0 0 000
Q ss_pred ----hHHH-------------------------------HHHHHHHhccCCcchHHHHH---HHHHhhhccCcccceeee
Q 037870 259 ----NVEF-------------------------------TTKGMYKSMKCPQVWKPSLY---MYLSLAVSISTHEGQFYW 300 (511)
Q Consensus 259 ----~~~~-------------------------------~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 300 (511)
..+. .+.+++.+++.+.....++. .++..+.++++...++..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~ 471 (742)
T TIGR01299 392 FSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDM 471 (742)
T ss_pred HHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00012333333322211111 111111111111111100
Q ss_pred ee----------------------------------------------------------------cC------------
Q 037870 301 YT----------------------------------------------------------------DP------------ 304 (511)
Q Consensus 301 ~~----------------------------------------------------------------~~------------ 304 (511)
.. +.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 551 (742)
T TIGR01299 472 IKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTF 551 (742)
T ss_pred HHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccch
Confidence 00 00
Q ss_pred ----------------------------CCCCCCC-------hhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Q 037870 305 ----------------------------KAGPAFS-------QEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSA 349 (511)
Q Consensus 305 ----------------------------~~~~g~s-------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~ 349 (511)
..+.+.+ .........+..++.+++.++.+++.||+|+|+++..+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~ 631 (742)
T TIGR01299 552 IDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGS 631 (742)
T ss_pred hhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 0000000 01123334677789999999999999999999998887
Q ss_pred HHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHH
Q 037870 350 QLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSK 429 (511)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~ 429 (511)
.++..+.++... +. +.....+...++.+++.+..+.....+++|+.|++.||+++|+.++...+|..+||
T Consensus 632 ~~lsai~~ll~~-~~---------~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp 701 (742)
T TIGR01299 632 MVLSCISCFFLS-FG---------NSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGI 701 (742)
T ss_pred HHHHHHHHHHHH-HH---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555333221 11 11112222223445555555666778889999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCcC
Q 037870 430 WGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQS 476 (511)
Q Consensus 430 ~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (511)
.++|.+.+.. ....+.+++++.+++.++.+++||++++
T Consensus 702 ~i~g~L~~~~---------~~~pf~i~a~~lll~~ll~~~LPET~~~ 739 (742)
T TIGR01299 702 LIFGSFVGIT---------KAAPILFASAALACGGLLALKLPDTRGQ 739 (742)
T ss_pred HHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 9999887642 1233455555556666666677887764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=240.70 Aligned_cols=356 Identities=13% Similarity=0.061 Sum_probs=240.8
Q ss_pred CchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHH
Q 037870 55 NSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVI 133 (511)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~ 133 (511)
+|..+......+ +.+++.........|.+.++ +|.++.+.|++.+...++..+ .++.|+++||+ +||+.+..
T Consensus 13 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~ 85 (406)
T PRK11551 13 LALTIGLCFLVA-LLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-----GRKRILIV 85 (406)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHH
Confidence 343434444444 56666666666677777655 999999999999999999887 89999999996 67788888
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 037870 134 AGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGF 213 (511)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~ 213 (511)
+.++..++.++++++++.. .+++.+++.+++.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 161 (406)
T PRK11551 86 SVALFGLFSLATAQAWDFP--SLLVARLLTGVGLGGALPNLIALTSEAVG--PRLRGTAVSLMYCGVPFGGALASVIGVL 161 (406)
T ss_pred HHHHHHHHHHHHHHhccHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877654 35677889999988888888899999874 4569999999999999999999999999
Q ss_pred hhccCChhhHHHHhhhHHHHH-HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccC
Q 037870 214 SVNHLGPQGALGVLAIPPVLL-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSIS 292 (511)
Q Consensus 214 l~~~~gw~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (511)
+.+..+||+.|++.++..++. .+..+++||++++..++.+++..+ +..+...+..+++..+...+..++.......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (406)
T PRK11551 162 AAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA---PVLRALFGEGRATATLLLWISYFFTLIVLYF 238 (406)
T ss_pred HccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh---hhHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 988899999999887766553 334556777654322110000000 1111111111112222222211121111111
Q ss_pred cccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccC
Q 037870 293 THEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALG 372 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (511)
.....+.+.. +.|+++.+.+.+.....++.+++.++.+++.||.++|+.+........+..+ .+..
T Consensus 239 ~~~~~p~~~~----~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~---~~~~------- 304 (406)
T PRK11551 239 LLNWLPSLLV----GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLA---ALAA------- 304 (406)
T ss_pred HHHHHHHHHH----hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHh-------
Confidence 1111222222 2588899999998888899999999999999999999887765433332211 1111
Q ss_pred CCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 373 IPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
.++.+......++.++...........+..|.+|+++||+.+|+.+...++|..+||.++|.+.+.
T Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~ 370 (406)
T PRK11551 305 APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL 370 (406)
T ss_pred cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence 111222222223334444444555667788999999999999999999999999999999999875
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-28 Score=244.50 Aligned_cols=363 Identities=10% Similarity=-0.038 Sum_probs=260.6
Q ss_pred chhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHH
Q 037870 56 STFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIA 134 (511)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~ 134 (511)
|..+..+.+.+ +...++.+....++|.+.++ +|.+..+.+|+.+.+.+++.. +|++|+++||+ +||+.++.+
T Consensus 5 ~~~~~~~~~~~-~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-----Grk~~l~~~ 77 (495)
T PRK14995 5 WLTLVIIVLVY-IPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-----GFKRLLMLG 77 (495)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHH
Confidence 34456666666 77888888889999998766 999999999999999999876 99999999995 789999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037870 135 GVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFS 214 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l 214 (511)
.+++.++.++++++++.+. +++.|+++|+|.+...+.....+.+... ++++|+++++++....++|..+||.++|++
T Consensus 78 ~~~~~~~~~~~~~a~~~~~--li~~r~l~G~g~~~~~~~~~~~l~~~~~-~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l 154 (495)
T PRK14995 78 GTLFGLASLAAAFSPTASW--LIATRALLAIGAAMIVPATLAGIRATFT-EEKQRNMALGVWAAVGSGGAAFGPLVGGIL 154 (495)
T ss_pred HHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999886554 6778999999998877766666655432 235699999999999999999999999999
Q ss_pred hccCChhhHHHHhhhHHHHH-HHHHhhcccccccccchhh-hhh--------------------hhhHHH----------
Q 037870 215 VNHLGPQGALGVLAIPPVLL-IVLGFVIYETRSANIRSEK-KKV--------------------MENVEF---------- 262 (511)
Q Consensus 215 ~~~~gw~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~~-~~~--------------------~~~~~~---------- 262 (511)
.+++|||+.|++...+.++. .+..+++||++.++.++.+ ... ......
T Consensus 155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (495)
T PRK14995 155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL 234 (495)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 99999999999987776663 4455566765432211100 000 000000
Q ss_pred -----HHHHH--------HHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHH
Q 037870 263 -----TTKGM--------YKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIG 329 (511)
Q Consensus 263 -----~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 329 (511)
...+. .+.+|+|.++...+..++............+.+.+.. .|+|+.+.|+......++..++
T Consensus 235 ~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v---~g~s~~~ag~~~~~~~~~~~~~ 311 (495)
T PRK14995 235 LLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV---HGLSPLEAGMFMLPVMVASGFS 311 (495)
T ss_pred HHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHH
Confidence 00000 2466777766555544443332222111222233333 6899999999999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcc
Q 037870 330 VLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGI 409 (511)
Q Consensus 330 ~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 409 (511)
.++.|++.||+++|+.+..+.++..+...... ... .....+......++.++..+....+......+.+|+++
T Consensus 312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~-~~~------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~ 384 (495)
T PRK14995 312 GPIAGILVSRLGLRLVATGGMALSALSFYGLA-MTD------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK 384 (495)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH-Hhc------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh
Confidence 99999999999998887766555443222111 111 01122222333456677777777778888889999999
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 410 EGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 410 ~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
+|.+.++.++..++|..+|+.+.|.+.+.
T Consensus 385 ~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 385 AAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=241.74 Aligned_cols=390 Identities=12% Similarity=0.019 Sum_probs=237.5
Q ss_pred HHHHHHHhhcccccccchhhhhhhhhhcccCCC--hHH--HHH--HHHHhhcchhh-hhHHHhhhcccccCCCCCchHHH
Q 037870 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQ--PSV--VQI--YIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFV 132 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~--~g~--~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~ 132 (511)
....+.+ +..+++...+....|.+-++ ++.+ +.. ++. ..++..+++.+ ++++|+++||+ +||+.+.
T Consensus 19 ~~~~~g~-~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Grr~~l~ 91 (490)
T PRK10642 19 TAASLGN-AMEWFDFGVYGFVAYALGKV-FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-----GRQKILA 91 (490)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHh-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHH
Confidence 3334444 55666666666666655443 6432 321 222 13566677777 88999999995 7888999
Q ss_pred HHHHHHHHHHHHHHhcCChhH------HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHH
Q 037870 133 IAGVAGCVSALMFSLLGKLPI------AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLI 206 (511)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~l 206 (511)
++.++++++.+++++++++.. ..+++.|+++|++.+...+...+++.|..+ +++|++..++...+..+|..+
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p--~~~Rg~~~~~~~~~~~~G~~l 169 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP--DRKRGFMGSWLDFGSIAGFVL 169 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC--CCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999998653 236788999999999999999999999984 456999999888888888888
Q ss_pred HHHHHHHhh--------ccCChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhh--hhhhHH-HHHHHHHHhccC-C
Q 037870 207 GYAVSGFSV--------NHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKK--VMENVE-FTTKGMYKSMKC-P 274 (511)
Q Consensus 207 g~~~~g~l~--------~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~-~ 274 (511)
|+.+...+. ..+|||++|++.+++.++..++...+||+++.....++.+ ..+... +...++++.+++ +
T Consensus 170 g~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (490)
T PRK10642 170 GAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHW 249 (490)
T ss_pred HHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhH
Confidence 876665442 3679999999977655554445566787754321110000 000000 000122333332 1
Q ss_pred cchHHHH-HHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 037870 275 QVWKPSL-YMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLY 353 (511)
Q Consensus 275 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~ 353 (511)
+.+.... ..++.....+......+.+.... .|++....++......++.+++.++.+++.||+|+|+.+..+.++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 326 (490)
T PRK10642 250 RSLLTCIGLVIATNVTYYMLLTYMPSYLSHN---LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVAL 326 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111111 11111121222222233333222 5788877777777778889999999999999999999887765433
Q ss_pred HHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Q 037870 354 GISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGG 433 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g 433 (511)
.+..+....... .......+...++.++..+........+..|.+|++.||+..|+......+++.++|.+.|
T Consensus 327 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g 399 (490)
T PRK10642 327 FVLAIPAFILIN-------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA 399 (490)
T ss_pred HHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221111111 1111122222223333334444455566778999999999999876667778889999999
Q ss_pred HHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 037870 434 IVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQ 475 (511)
Q Consensus 434 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
++.+..+. . ...+.+..+..++.++..+++||+++
T Consensus 400 ~l~~~~~~----~---~~~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 400 WLVESTQN----L---MMPAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHHHHhCC----c---hHHHHHHHHHHHHHHHHHHHhccccC
Confidence 98875431 1 11122223334444444455677654
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-28 Score=236.81 Aligned_cols=347 Identities=16% Similarity=0.111 Sum_probs=248.6
Q ss_pred cccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 037870 71 GFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLG 149 (511)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~ 149 (511)
.+........+|.+..+ ++.+..++|++.++..++..+ +|++|+++||+ +||+.++.+.++..++..+.++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 12 LIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRY-----DRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-----chhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677887776 899999999999999999887 99999999996 677788888777777766666554
Q ss_pred ---ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 150 ---KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 150 ---~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
+.+...+++.+++.+++.+...+...+++.|..++ ++|++..++.+.+..+|.++||.+++.+.+..|||+.|++
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE--EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11333467778899999999999999999999854 4699999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHhhc--ccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcc-cceeeeeec
Q 037870 227 LAIPPVLLIVLGFVI--YETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTH-EGQFYWYTD 303 (511)
Q Consensus 227 ~~~~~~i~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 303 (511)
.++..++..+..+.+ ||+++++.++.++ +..++..+..+..+|+|.++...+..++......... ...+++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T TIGR00900 164 DAVGFAISALLIVSVRIPELAASEIQALSN---AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSK 240 (365)
T ss_pred HHHHHHHHHHHHHhcccccCCCccccccch---hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 877666544433333 3322211111000 1111222345567788888776655544443222222 233444443
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHH
Q 037870 304 PKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQ 383 (511)
Q Consensus 304 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (511)
. +|.++.+.|.+.....++.+++.++.+++.||.++|+.+..+..+..+..... .... ++.+..+...
T Consensus 241 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~ 308 (365)
T TIGR00900 241 Y---LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVV-GLTP--------PNFPLFLVLW 308 (365)
T ss_pred H---hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-Hhhc--------hhHHHHHHHH
Confidence 3 58889999999888899999999999999999999988776644443321111 1110 1123333344
Q ss_pred HHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 384 CVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
++.++..+...+....+..|.+|+++||+++|+.+...+++..+++.++|.+.|.+|
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 556666677777777888999999999999999999999999999999999998754
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=245.68 Aligned_cols=360 Identities=12% Similarity=0.044 Sum_probs=235.5
Q ss_pred chhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHH
Q 037870 56 STFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIA 134 (511)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~ 134 (511)
+..+....+.| +.............|.+.++ +|++..+.|++.+++.+++.+ +|+.|+++||+ +||+++..+
T Consensus 28 ~~i~~~~~~~~-~~~y~~r~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~r~~l~~~ 100 (467)
T PRK09556 28 MQSYLVVFIGY-LTMYLIRKNFKAAQNDMIST-YGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-----NTKQFLPFL 100 (467)
T ss_pred HHHHHHHHHHH-HHHHHHhcChhhhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-----CccchHHHH
Confidence 44445555666 44444445556677776555 999999999999999999988 99999999996 677777777
Q ss_pred HHHHHHHHHHHHh-----cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHH
Q 037870 135 GVAGCVSALMFSL-----LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYA 209 (511)
Q Consensus 135 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~ 209 (511)
.++.++..+..++ +++ ...+++.|++.|++.+...+....++.++. ++++|+++++++..+.++|.++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~--~~~~rg~a~gi~~~~~~lG~~l~~~ 176 (467)
T PRK09556 101 LILSAICMLGFGASLGSGSVS--LGLMIALWALSGFFQSTGGPCSYSTITRWT--PRRKRGRFLGFWNISHNLGGAGAGG 176 (467)
T ss_pred HHHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHc--CccceeeeEEeeecccchhhhHHHH
Confidence 7666666555544 343 444677888999998888888888888887 4466999999999999999999999
Q ss_pred HHHHhhccC---ChhhHHHHhhhHHHHHHH-HHhhccccccccc--chh---------hhhhhhhHHHHHHH-H-HHhcc
Q 037870 210 VSGFSVNHL---GPQGALGVLAIPPVLLIV-LGFVIYETRSANI--RSE---------KKKVMENVEFTTKG-M-YKSMK 272 (511)
Q Consensus 210 ~~g~l~~~~---gw~~~f~~~~~~~~i~~~-~~~~~~e~~~~~~--~~~---------~~~~~~~~~~~~~~-~-~~~l~ 272 (511)
+..++.+.. +||..|.+.+++.++..+ .+++.++++++.. +.+ +++..++.+....+ . +..++
T Consensus 177 i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 256 (467)
T PRK09556 177 VALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLK 256 (467)
T ss_pred HHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHc
Confidence 987776643 699999888877766443 3444454432210 000 00000000000011 1 23678
Q ss_pred CCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 037870 273 CPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLL 352 (511)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~ 352 (511)
+|.+|...+..++............+.|..+. +|++..+.+.......++.+++.++.|++.||+++|+.+.....+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~---~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~ 333 (467)
T PRK09556 257 NPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE---LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL 333 (467)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 89888777666554443332222333333333 689999999888888899999999999999999988876554333
Q ss_pred HHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHH-HHhHHHHH
Q 037870 353 YGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSI-GSLTSKWG 431 (511)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~~g~~l 431 (511)
..+.. ....+.. ..+........++.++.......+......|..|++.+|++.|+.+...++ |..++|.+
T Consensus 334 ~~~~~-~~~~~~~-------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~ 405 (467)
T PRK09556 334 ALIIF-TLGVYQH-------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVG 405 (467)
T ss_pred HHHHH-HHHHHHh-------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhh
Confidence 22211 1111111 111111111112222211111112234556999999999999999999997 77999999
Q ss_pred HHHHHH
Q 037870 432 GGIVLH 437 (511)
Q Consensus 432 ~g~l~~ 437 (511)
.|.+.|
T Consensus 406 ~G~i~~ 411 (467)
T PRK09556 406 LGMIAD 411 (467)
T ss_pred HHHHhc
Confidence 999998
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=244.25 Aligned_cols=364 Identities=10% Similarity=-0.021 Sum_probs=235.1
Q ss_pred cCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHH
Q 037870 54 LNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFV 132 (511)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~ 132 (511)
++|.++.+.++.++...+.. ......+|.+..+ +|.+..+.+++.+.+.+...+ +|++|+++||+ +||+.++
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~-~~~~~~~~~i~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----g~r~~l~ 88 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFP-KAVTVFFKELQQI-FQATYSETAWISSIMLAVLYAGGPISSILVNRF-----GCRPVVI 88 (455)
T ss_pred cchHHHHHHHHHHHHHHhhh-cchhhhHHHHHHH-hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-----CchHHHH
Confidence 45555555444443222222 2234456666554 999999999999998877666 99999999996 6777888
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHH
Q 037870 133 IAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSG 212 (511)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g 212 (511)
.+.++..++++.++++++.... +...+++.|++.+...+...+++.++. +++|+++.++.+.+..+|..++|++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~G~~~~~~~~~~~~~~~~~~---~~~r~~a~g~~~~~~~~g~~~~~~l~~ 164 (455)
T TIGR00892 89 AGGLLASLGMILASFSSNVIEL-YLTAGFITGLGLAFNFQPSLTMLGKYF---YRRRPLANGLAMAGSPVFLSTLAPLNQ 164 (455)
T ss_pred hhHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcchhhhhHHHHHHHHHH---HhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8888888888888888765532 233456778877765555556666665 246899999999999999999999999
Q ss_pred HhhccCChhhHHHHhhhHHHHHHHHHhhc-cccccc---ccc-hh----h-hhhh---hhHHHHHHHH--HHhccCCcch
Q 037870 213 FSVNHLGPQGALGVLAIPPVLLIVLGFVI-YETRSA---NIR-SE----K-KKVM---ENVEFTTKGM--YKSMKCPQVW 277 (511)
Q Consensus 213 ~l~~~~gw~~~f~~~~~~~~i~~~~~~~~-~e~~~~---~~~-~~----~-~~~~---~~~~~~~~~~--~~~l~~~~~~ 277 (511)
.+.+.+|||+.|++.+++.++..+..++. ++++.+ +.+ .+ + .... .+..+...+. .+.+++|.++
T Consensus 165 ~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (455)
T TIGR00892 165 YLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFL 244 (455)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHH
Confidence 99999999999999988776643333333 221110 000 00 0 0000 0001111111 2567888887
Q ss_pred HHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHH
Q 037870 278 KPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY--PLRNLLFSAQLLYGI 355 (511)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~l~~~~~~~~~ 355 (511)
..++..++...........++.+..+ .|++..+.+.+..+.+++.+++.++.+++.||. +.++...........
T Consensus 245 ~~~~~~~l~~~~~~~~~~~l~~~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 245 VYLSGNVIMFLGFFAPIIFLVPYAKD----KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 66665544443332222222222222 588999999998888899999999999999874 333333322111111
Q ss_pred hhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037870 356 SGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIV 435 (511)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l 435 (511)
++..+.... .++.+..+...++.++..+.........+.+.+|++++|+.+|++++..++|..+||.++|.+
T Consensus 321 -~l~~ll~~~-------~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 321 -GLTHLLCAL-------AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred -HHHHHHHHH-------hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence 111111111 112222333344556666666677778888999999999999999999999999999999999
Q ss_pred HHHhc
Q 037870 436 LHLLH 440 (511)
Q Consensus 436 ~~~~g 440 (511)
.+..|
T Consensus 393 ~~~~g 397 (455)
T TIGR00892 393 VDATK 397 (455)
T ss_pred ehhcC
Confidence 98764
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-28 Score=230.11 Aligned_cols=402 Identities=14% Similarity=0.147 Sum_probs=289.3
Q ss_pred cccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhccc-ccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 71 GFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAF-PIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~-~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
++.......++..+++|..|+++..+|.+..+..+--++ .|+.|.++||. .++| ||||+++++.+..++.+.++..+
T Consensus 25 ~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~G-rfRP~lL~g~ip~~i~~~l~F~~ 103 (467)
T COG2211 25 NFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWG-RFRPWLLWGAIPFAIVAVLLFIT 103 (467)
T ss_pred HHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccc-cccHHHHHHhHHHHHHHHHHHcC
Confidence 333445566788999999999999999999998888887 99999999999 5678 99999999999999999988888
Q ss_pred CCh----hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc-------c
Q 037870 149 GKL----PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN-------H 217 (511)
Q Consensus 149 ~~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~-------~ 217 (511)
++. ....+.+..++.+++......+..++.+++++ +++||.+..++.+.+.++|..+...+.+.++. .
T Consensus 104 p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~-d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~ 182 (467)
T COG2211 104 PDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ-DPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKA 182 (467)
T ss_pred CCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 753 34456677788899999999999999999986 45789999999999999998777766666643 3
Q ss_pred CChhhHHHHhhhHHHHH-HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccc
Q 037870 218 LGPQGALGVLAIPPVLL-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEG 296 (511)
Q Consensus 218 ~gw~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
.||+...++.++++.+. ..+++-.+|+..+....++ +.+. +..+++...++||+++..++..++.........+.
T Consensus 183 ~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~-~~~~---~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~ 258 (467)
T COG2211 183 LGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT-GVKL---KLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSI 258 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-cccc---cHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhh
Confidence 47888877777777764 4566667877654332211 0111 12234556788998887777555544433333455
Q ss_pred eeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCch
Q 037870 297 QFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDS 376 (511)
Q Consensus 297 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (511)
..||.+.. +|.+.............+.+++.++..++.+|+|+|+++.++.++..++.....+.. ..+.
T Consensus 259 ~~yy~~y~---lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~--------~~~~ 327 (467)
T COG2211 259 MVYYVTYV---LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP--------AGSV 327 (467)
T ss_pred hheeEEEE---cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc--------Ccch
Confidence 66777776 577777777777788888888899999999999999999999777766544332221 2223
Q ss_pred hhhhHHHHHHHHHHHhhHhHHHHHHhhc-------CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCC-ccc
Q 037870 377 FFVITEQCVSHIISKIRWIPMIVLSTRL-------CPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTD-FTN 448 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~-~~~ 448 (511)
++.+...++.++..+.......+++.|. ..++.+|..+|.++.+..+|.+++..+.|++.+..|+..+. .+.
T Consensus 328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~ 407 (467)
T COG2211 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQS 407 (467)
T ss_pred HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence 3444444455566666655555555533 45788999999999999999999999999999999998665 454
Q ss_pred hHHHHH-------HHHHHHHHHHHHHhhcCCCCcCcCccchhhccCCC
Q 037870 449 LWLVIL-------IRNVLRLATLGLIFLVPKADQSDELIPVDLLRKNS 489 (511)
Q Consensus 449 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (511)
...+.. +-+++.+++++.+.+.|.++++.++..+|+.++++
T Consensus 408 ~~al~gI~~~~~~~Pa~l~l~~~i~~~~y~L~~~~~~~I~~eL~~r~~ 455 (467)
T COG2211 408 ASALFGIRFLFIILPALLLLLAAIIIFFYKLNEKMHKEIIEELEQRKA 455 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 333222 22334444555555677776666666676655554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=237.85 Aligned_cols=364 Identities=12% Similarity=0.076 Sum_probs=246.1
Q ss_pred cCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHH
Q 037870 54 LNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFV 132 (511)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~ 132 (511)
++|+.+.+..+.+ +..++.........|.+.+ ++|.+..+.|++.++..++..+ +|+.|+++||+ +||+.++
T Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~~~ 81 (405)
T TIGR00891 9 AQWNAFSAAWLGW-LLDAFDFFLVALVLAEVAG-EFGLTTVDAASLISAALISRWFGALMFGLWGDRY-----GRRLPMV 81 (405)
T ss_pred ccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHH
Confidence 4455556666666 6677777677777777654 4999999999999999999887 99999999996 6777888
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHH
Q 037870 133 IAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSG 212 (511)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g 212 (511)
.+.++..++.+++++++++.. ++..+++.|++.+...+...+++.|..+ +++|+++.++.+.+..+|.++++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 82 TSIVLFSAGTLACGFAPGYIT--MFIARLVIGIGMGGEYGSSAAYVIESWP--KHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred HHHHHHHHHHHHHHHhccHHH--HHHHHHHHHhhhhhhhHHHHHHHHHhCC--hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876543 5677899999999988888999999884 356999999999999999999999999
Q ss_pred HhhccCC--hhhHHHHhhhHHHHHHHHHhhcccccccccchhhhh-hhhhHHHH----------HHHHHHhcc--CCcch
Q 037870 213 FSVNHLG--PQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKK-VMENVEFT----------TKGMYKSMK--CPQVW 277 (511)
Q Consensus 213 ~l~~~~g--w~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~l~--~~~~~ 277 (511)
.+.+..+ ||+.|++.++..++..+....+||++..++++++++ ..+..++. .++.....+ .++.+
T Consensus 158 ~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (405)
T TIGR00891 158 LVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRW 237 (405)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhh
Confidence 9988766 999998876655555455556777643221111000 00000000 000000000 01111
Q ss_pred HH----HHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 037870 278 KP----SLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLY 353 (511)
Q Consensus 278 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~ 353 (511)
.. .+...+............+.+.... .|++..+.+.+.....++.+++.++.+++.||+++|+.+..+..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 238 PTFVYLVVLVLFANLYSHPIQDLLPTYLKAD---LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence 11 1111111111111122222233222 6899999999988889999999999999999999999887765544
Q ss_pred HHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Q 037870 354 GISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGG 433 (511)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g 433 (511)
....+. .... ....+.......+.+++...........++|.+|++++|+++|+.+.+.++|..++|.++|
T Consensus 315 ~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g 385 (405)
T TIGR00891 315 QLLIIP--VFAI-------GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA 385 (405)
T ss_pred HHHHHH--HHHh-------CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 221111 1111 1111222222123333444444555677889999999999999999999999999999999
Q ss_pred HHHHHhc
Q 037870 434 IVLHLLH 440 (511)
Q Consensus 434 ~l~~~~g 440 (511)
.+.+..|
T Consensus 386 ~l~~~~g 392 (405)
T TIGR00891 386 LLAQRLD 392 (405)
T ss_pred HHHHhcc
Confidence 9999877
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=231.67 Aligned_cols=326 Identities=13% Similarity=0.083 Sum_probs=232.8
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 037870 79 VVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIAL 157 (511)
Q Consensus 79 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (511)
..+|++.++ +|++++++|+..++..+...+ +|++|+++||+ +||+.++.+.++.+++.++++++++++ .++
T Consensus 41 ~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~--~l~ 112 (394)
T PRK10213 41 SLLTPMAQD-LGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-----DRRYVVILFAVLLTLSCLLVSFANSFS--LLL 112 (394)
T ss_pred hhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcHHHHHHHHHHHHHHHHHHHHHChHH--HHH
Confidence 346666554 999999999999999988877 99999999996 688899999999999988888877554 467
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHH-
Q 037870 158 ACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV- 236 (511)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~- 236 (511)
+.|++.|++.+...+...+++.|..+ +++|+++.++...+.++|..+||++++++.+.+|||+.|++.+++.++..+
T Consensus 113 ~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 113 IGRACLGLALGGFWAMSASLTMRLVP--PRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 78899999999988888999999884 456999999999999999999999999999999999999998776665333
Q ss_pred HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccce-eeeeecCCCCCCCChhHH
Q 037870 237 LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQ-FYWYTDPKAGPAFSQEFV 315 (511)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~ 315 (511)
.....||++.++++ . .++.++.+++|.++..++..++............ +++.. +.|+++...
T Consensus 191 ~~~~~p~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~g~s~~~~ 254 (394)
T PRK10213 191 IIKSLPSLPGEPSH---Q---------KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN----LAGFGVDGL 254 (394)
T ss_pred HHHHCCCCCccccc---c---------hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCChhHH
Confidence 33345654322110 0 0123467788888776554333332222211111 22222 268999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHh
Q 037870 316 GLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWI 395 (511)
Q Consensus 316 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
+.+....+++.+++.++.+++.||.+ |+.+.....+.....+...... +..+.......+.++..+....
T Consensus 255 g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~l~G~~~~~~~~ 324 (394)
T PRK10213 255 TLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG---------SDKIVATGVAIIWGLTFALVPV 324 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHhhhH
Confidence 99888888999999999999999964 4433333232222111111111 1122222334455666666666
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 396 PMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 396 ~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
...+.+++..| +++++..++.....++|..+|+.++|++.|..|+
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~ 369 (394)
T PRK10213 325 GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGL 369 (394)
T ss_pred HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 67777888887 5577888888889999999999999999997653
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=238.36 Aligned_cols=403 Identities=14% Similarity=0.127 Sum_probs=257.4
Q ss_pred cccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhccc-ccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 71 GFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAF-PIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~-~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
++........++.|+++.+|+++.++|.+..+..+..++ +|++|.++||. .++| ||||+++.+.+.++++..++...
T Consensus 19 ~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~G-rrrp~il~g~i~~~i~~~llf~~ 97 (473)
T PRK10429 19 DFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWG-KFKPWILIGTLANSVVLFLLFSA 97 (473)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCC-CcchhHhhhhHHHHHHHHHHHcC
Confidence 334445566788888898999999999999998888777 99999999998 5667 88999999998888887776554
Q ss_pred CChh----HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc-------c
Q 037870 149 GKLP----IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN-------H 217 (511)
Q Consensus 149 ~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~-------~ 217 (511)
++.+ ...+++..++..++..+..++..++..|++++ +++|.++.++...+.++|..+++.+...+.+ .
T Consensus 98 p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~-~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~ 176 (473)
T PRK10429 98 HLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD-KREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRG 176 (473)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 4321 22344445566778888888899999998753 4678998888777777776666655544322 2
Q ss_pred CChhhHHHHhhhHHHH-HHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccc
Q 037870 218 LGPQGALGVLAIPPVL-LIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEG 296 (511)
Q Consensus 218 ~gw~~~f~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
.+|+....+.+++.++ ..+..+..||++.++....+++.+.+.+ +.++.+++||.++..++..++...........
T Consensus 177 ~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~ 253 (473)
T PRK10429 177 FGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLK---DIVALIYKNDQLSCLLGMALAYNIASNIINGF 253 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHH---HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567776666666655 3344455777532211100011111222 23445668888777666555544433333334
Q ss_pred eeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCch
Q 037870 297 QFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDS 376 (511)
Q Consensus 297 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (511)
..|+.... .+ +....+.+.....++.+++.++.+++.||+|+|+.+..+..+.++..+....... ......
T Consensus 254 ~~y~~~y~---~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 324 (473)
T PRK10429 254 AIYYFTYV---IG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL-----AAPHNA 324 (473)
T ss_pred eeeEEEEE---CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-----cCchhH
Confidence 44555543 22 4556666667777888999999999999999999988776554433222211100 011122
Q ss_pred hhhhHHHHHHHHHHHhhHhHHHHHHhhcCC-------CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccch
Q 037870 377 FFVITEQCVSHIISKIRWIPMIVLSTRLCP-------IGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNL 449 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~ 449 (511)
+..+....+.++..+.......++++|.++ ++.+|..+|..+...+++..+|+.+.|++.+..|+..+.-+..
T Consensus 325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~~~~~q~~ 404 (473)
T PRK10429 325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYVPNVEQSA 404 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCH
Confidence 233333345555666666666677777755 5678889999999999999999999999999999864332221
Q ss_pred H-------HHHHHHHHHHHHHHHHH-hhcCCCCcCcCccchhhccC
Q 037870 450 W-------LVILIRNVLRLATLGLI-FLVPKADQSDELIPVDLLRK 487 (511)
Q Consensus 450 ~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 487 (511)
. ....+.+++.+++++++ .+.|-++++.++..+|+.++
T Consensus 405 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~~~ 450 (473)
T PRK10429 405 QTLLGMQFIMIGLPTLFFMITLVLYFRYYRLNGDFLRRIQIHLLDK 450 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCCHHHHHHHHHHHHHH
Confidence 1 11223333344454444 35666655555555555433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=228.54 Aligned_cols=361 Identities=15% Similarity=0.137 Sum_probs=237.1
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhccc--ccCCCCCchHHHHHHH
Q 037870 59 IFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAF--PIKGYHRRPYFVIAGV 136 (511)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~--~~~g~~Rr~~l~~~~~ 136 (511)
+..+...| +.||+..++..+.+|.++++ .|.|.+++|+. +...+++..+++++++.||+ ++.| +||.+++...+
T Consensus 3 ~~~~~~ly-~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~-~~~~l~~~~~~l~~p~~~~~~~~~~g-~r~~~i~~~~~ 78 (390)
T TIGR02718 3 VITLGLLY-LSQGIPIGLAMDALPTLLRE-DGAPLTALAFL-PLVGLPWVVKFLWAPLVDNWWSWRLG-RRRSWVLPMQC 78 (390)
T ss_pred HHHHHHHH-HHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHH-HHHHHHHHHHHHHHHHHhccccccCC-cchhHHHHHHH
Confidence 35667788 99999999999999999998 79999999987 44566676777788888775 2334 56665555444
Q ss_pred HHHHHHHHHH-hcCChh-HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037870 137 AGCVSALMFS-LLGKLP-IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFS 214 (511)
Q Consensus 137 ~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l 214 (511)
+..++...++ +..... ....+...+..++..+..++..|++..|..+ +++++...+....+..+|.++|+...+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~--~~~~~~~~~~~~~g~~lG~~~g~~~~~~l 156 (390)
T TIGR02718 79 LVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFN--GRTLAKGNAVQIAGVMIGFFGGGAGTLVL 156 (390)
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 212111 1123344455667788888888888777653 34456666667777788999999888899
Q ss_pred hccCChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcc
Q 037870 215 VNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTH 294 (511)
Q Consensus 215 ~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 294 (511)
.+++|||..|++.+++.++..+..++++|+++++++.+ + +..++.++.+|+|.++..+...++.........
T Consensus 157 ~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 228 (390)
T TIGR02718 157 FGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAP-L-------ARRASLFRFFRRPLAWSLLALALLSAMTAVSGF 228 (390)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccc-h-------hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887775544455554432211110 0 112346678889988777665555443222222
Q ss_pred cceeeeeecCCCCCCCChhHHHHHHHHHH-HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCC
Q 037870 295 EGQFYWYTDPKAGPAFSQEFVGLIYALGA-VASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGI 373 (511)
Q Consensus 295 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (511)
...+.+..+ .|++++++|.+..... +..+++.++.|++.||+++|+.+..+..+.....+...... ..+ ..
T Consensus 229 ~~~~~~l~~----~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~---~~~-~~ 300 (390)
T TIGR02718 229 GLSKLYLVD----AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQA---AFW-LA 300 (390)
T ss_pred HHhhHHHHh----cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---Hcc-cC
Confidence 222222222 6899999999876554 57778889999999999999988876554432222111111 111 11
Q ss_pred CchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCC-cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 374 PDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPI-GIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
+.....+....+.++..+...........+.+++ +.+|+.+++.++..++|..+||.++|.+.+..|+
T Consensus 301 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~ 369 (390)
T TIGR02718 301 PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY 369 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2222222222333445566666666676677765 8999999999999999999999999999998774
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=243.45 Aligned_cols=360 Identities=11% Similarity=0.052 Sum_probs=231.2
Q ss_pred HHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHH
Q 037870 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAG 138 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~ 138 (511)
..+.+.+ +...+........+|.+.+ ++|+|..+.+++.+...++..+ .++.|+++||+ +||+.++.+.++.
T Consensus 23 ~~~~~~~-~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~ 95 (496)
T PRK03893 23 SAAWLGY-LLDGFDFVLITLVLTEVQG-EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-----GRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHH
Confidence 3444444 5555555565666676654 5999999999999999999887 89999999996 6788888888888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 037870 139 CVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL 218 (511)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~ 218 (511)
+++.+++++.++.. .+++.+++.|++.+...+...+++.|..+ +++|++..++...+.++|..+++.+++.+.+++
T Consensus 96 ~~~~~~~~~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 171 (496)
T PRK03893 96 SVGTLACGFAPGYW--TLFIARLVIGMGMAGEYGSSATYVIESWP--KHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW 171 (496)
T ss_pred HHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 88888888877544 36777889999988888888888888874 356899999999999999999999999999999
Q ss_pred ChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHH-------HHH----------HHHhcc---------
Q 037870 219 GPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFT-------TKG----------MYKSMK--------- 272 (511)
Q Consensus 219 gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-------~~~----------~~~~l~--------- 272 (511)
+||+.|++.++..++..+....+||+++.+.+.++++..++..+. ... ....+.
T Consensus 172 ~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (496)
T PRK03893 172 GWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIV 251 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 999999875444433333344456543211110000000000000 000 000000
Q ss_pred ------------------CCcchHHHHHHHH--HhhhccC--cccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 037870 273 ------------------CPQVWKPSLYMYL--SLAVSIS--THEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGV 330 (511)
Q Consensus 273 ------------------~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 330 (511)
++..+........ .....+. .....+.+... +.|++..+.+.+.....++.+++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~---~~g~~~~~~g~~~~~~~~~~~~g~ 328 (496)
T PRK03893 252 AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKT---DLGYDPHTVANVLFFSGFGAAVGC 328 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 0000010 01112222222 368999999999999999999999
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcch
Q 037870 331 LIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIE 410 (511)
Q Consensus 331 ~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 410 (511)
++.+++.||+++|+.+..+..+..+..+.. .... ....+.......+.+............++++.+|++++
T Consensus 329 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (496)
T PRK03893 329 CVGGFLGDWLGTRKAYVCSLLISQLLIIPV-FAIG-------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQR 400 (496)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHH-hhcc-------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHh
Confidence 999999999999988777654433321111 1110 11111111111122222222233445677899999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 411 GTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 411 g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
|+++|+.+...++|..+||.++|.+.+.+|+
T Consensus 401 g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~ 431 (496)
T PRK03893 401 AAGLGFTYNVGALGGALAPILGALIAQRLDL 431 (496)
T ss_pred hcccchhhhhhhHHHHHHHHHHHHHhccCCh
Confidence 9999999999999999999999999987664
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=235.03 Aligned_cols=364 Identities=11% Similarity=0.054 Sum_probs=243.5
Q ss_pred cCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHH
Q 037870 54 LNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFV 132 (511)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~ 132 (511)
.+|..+..+.+.| +.+..+........|. +++++|++..++|++.+++.+++.+ +++.|+++||+ +||+.+.
T Consensus 5 ~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----G~r~~~~ 77 (412)
T TIGR02332 5 LFRRLIIFLFILF-IFSFLDRINIGFAGLT-MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-----GARRWIA 77 (412)
T ss_pred ehhHHHHHHHHHH-HHHHhhhhhHHHHHHh-hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-----ChHHHHH
Confidence 3455666677777 5666666666677775 4556999999999999999999888 89999999996 6788889
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHH
Q 037870 133 IAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSG 212 (511)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g 212 (511)
.+.++..++.++++++++.. .+++.|++.|++.+...+....++.|+.+ +++|++..++++.+..+|.++++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--~l~~~r~l~G~~~~~~~~~~~~~~~~~~~--~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 78 GIMVLWGIASTATMFATGPE--SLYLLRILVGIAEAGFLPGILLYLTFWFP--AYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754 36778999999999888777778888874 456999999999999999999999999
Q ss_pred Hhhc------cCChhhHHHHhhhHHHHH-HHHHhhccccccccc---chhhhhhhhh----------H-----H--HHHH
Q 037870 213 FSVN------HLGPQGALGVLAIPPVLL-IVLGFVIYETRSANI---RSEKKKVMEN----------V-----E--FTTK 265 (511)
Q Consensus 213 ~l~~------~~gw~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~---~~~~~~~~~~----------~-----~--~~~~ 265 (511)
++.+ ..|||++|++.+++.++. .+.++++||++++.. +++++...+. . + ...+
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQR 233 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Confidence 8864 369999999988887764 445667787764321 1110000000 0 0 0001
Q ss_pred HHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHH
Q 037870 266 GMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNL 345 (511)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~ 345 (511)
..++.+++|.+|...+..++.........+..+.+..+. +.|++..+.+.+.....++.+++.++.+++.||+++|+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 234 SMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSF--NQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 122233456666555544443332333333333343331 246788888888889999999999999999999987765
Q ss_pred HHH-HHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 037870 346 LFS-AQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIG 424 (511)
Q Consensus 346 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg 424 (511)
... ...+..+ .+ .+... .......+....+..+..............|..|++++|+++|+.+...++|
T Consensus 312 ~~~~~~~~~~~-~~---~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g 381 (412)
T TIGR02332 312 HTALPYLFAAA-GW---LLASA------TDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIG 381 (412)
T ss_pred HHHHHHHHHHH-HH---HHHHh------cCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhh
Confidence 332 2222221 11 11110 1111111111111111111111122233356789999999999999999999
Q ss_pred HhHHHHHHHHHHHHhc
Q 037870 425 SLTSKWGGGIVLHLLH 440 (511)
Q Consensus 425 ~~~g~~l~g~l~~~~g 440 (511)
+.++|.+.|.+.+..|
T Consensus 382 ~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 382 SALSPFLIGILKDATG 397 (412)
T ss_pred hhhhhhhcccccccCC
Confidence 9999999999988754
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-27 Score=230.66 Aligned_cols=347 Identities=13% Similarity=-0.008 Sum_probs=237.5
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+...+....+.+.+|.+.++ +|.|..+.++..+.+.+++.+ +++.|+++||+ +||++++.+.++..++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~ 96 (406)
T PRK15402 23 FATYIANDMIQPGMLAVVED-FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-----GRRPVMLAGVAFFILTCLAIL 96 (406)
T ss_pred HHHHhhhhhHhcchHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHH
Confidence 44444555566677776555 999999999999999999887 89999999996 678888888888888888888
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
++++.. .++..+++.+++.+...+...+.+.|..+ +++|.+..++......+|..+||.+++.+.++.+||+.|++
T Consensus 97 ~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 97 LAQSIE--QFTLLRFLQGIGLCFIGAVGYAAIQESFE--EADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred HHccHH--HHHHHHHHHHhHhhhHHHHHHHHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 877654 35677888898888877777777777764 34577778888888889999999999999999999999999
Q ss_pred hhhHHHHHHH-HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCC
Q 037870 227 LAIPPVLLIV-LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPK 305 (511)
Q Consensus 227 ~~~~~~i~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (511)
.++..++..+ ..+..||++.+..++ .+.++..++.++.+++|.++...+..++............+++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 245 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETAGRVGEK------LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISG- 245 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCCcccccc------ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-
Confidence 8887766443 445567654322111 01112234556778899877765544433322111111223332222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
+|+++.+.|.......++.+++.++.+++.||+++|+.+..+..+..++......... . .....++.+....+
T Consensus 246 --~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~-~----~~~~~~~~~~~~~~ 318 (406)
T PRK15402 246 --EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATV-I----SSHAYLWLTAGLSL 318 (406)
T ss_pred --hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-c----ccccHHHHHHHHHH
Confidence 6888989998877777788999999999999999999887775544432222211110 0 01112222233334
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLL 439 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~ 439 (511)
.++..+...++...... ..+++++|++++.++....++..+|+.+++.+.+..
T Consensus 319 ~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 319 YAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred HHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 44444544444444333 344589999999999999999999999999886643
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=238.10 Aligned_cols=357 Identities=11% Similarity=0.061 Sum_probs=237.8
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHH
Q 037870 59 IFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVA 137 (511)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~ 137 (511)
+......+ +..++........+|.+. +++|+|+.+.+++.++..+++.+ +|++|+++||+ +||+.++.+.++
T Consensus 20 ~~~~~~~~-~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-----g~r~~l~~~~~~ 92 (426)
T PRK12307 20 LFSAWLGY-VFDGFDFMLIFYIMYLIK-ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-----GRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHH-HHHHhHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHH
Confidence 34444555 555565555555666554 45999999999999999999888 99999999995 788899999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037870 138 GCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH 217 (511)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~ 217 (511)
.+++.+.++++++.. .+++.+++.|++.+...+....++.|..+ +++|+++.++...+..+|.++++.+.+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~--~l~~~r~l~G~g~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 93 YSVGTGLSGLASGVI--MLTLSRFIVGMGMAGEYACASTYAVESWP--KHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred HHHHHHHHHHHhHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHhCC--HhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 999988888887544 46778999999998888888888888874 35689999999999999999999999999999
Q ss_pred CChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhh--hhh-hHHHHHHHHHHhccCCcchHHHHHHHHHhh---hcc
Q 037870 218 LGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKK--VME-NVEFTTKGMYKSMKCPQVWKPSLYMYLSLA---VSI 291 (511)
Q Consensus 218 ~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~ 291 (511)
.|||+.|++..+..++........||+++..+++.+++ ..+ ..+....+.++.+++|.++........... ...
T Consensus 169 ~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (426)
T PRK12307 169 YGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANW 248 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 99999998854433332222223344332111100000 000 000111245667777776544332221111 111
Q ss_pred CcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhccccc
Q 037870 292 STHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLAL 371 (511)
Q Consensus 292 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (511)
......+.+... .|+++...+.+.....++.+++.++.+++.||+++|+.+..+.++..+..+.. ....
T Consensus 249 ~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~------ 317 (426)
T PRK12307 249 PIFGLLPTYLAG----EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPL-FRIP------ 317 (426)
T ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHc------
Confidence 111222333322 57888888988888889999999999999999999988877755444321111 1111
Q ss_pred CCCchhhhhHHHHHHHHH--HHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 372 GIPDSFFVITEQCVSHII--SKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
.... ..+.. .+.+.. ...........+.|..|++.+|+++|+.....++++.++|.+.|++.+.+|
T Consensus 318 -~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 318 -QDNY-LLLGA-CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred -cccH-HHHHH-HHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 1111 11111 111111 111122334567899999999999999999999999999999999998765
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-27 Score=229.61 Aligned_cols=343 Identities=12% Similarity=0.017 Sum_probs=236.9
Q ss_pred ccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
..+.........+.+.++ +|.+..+.+++.+.+.+++.+ +|++|+++||+ +||++++.+.++..++.+++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-----grr~vl~~~~~~~~~~~~~~~~~ 88 (393)
T PRK11195 15 SALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-----PKGRVMFIANGIKLLGCLLMLFG 88 (393)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-----CCchhhHHHHHHHHHHHHHHHHH
Confidence 333333334455666555 999999999999999999987 99999999996 78889999988888877776665
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhh
Q 037870 149 GKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLA 228 (511)
Q Consensus 149 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~ 228 (511)
++. ++.++++|++.+...+...+++.|+.++ ++|+++.++.+...++|.++||.++|++.+. .|+..+.+.+
T Consensus 89 ~~~-----~~~r~l~G~~~a~~~pa~~a~i~~~~~~--~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~ 160 (393)
T PRK11195 89 IHP-----LLAYGLVGIGAAAYSPAKYGILTELLPG--EKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCA 160 (393)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 432 4567889999999999999999999854 5699999999999999999999999999885 4888887776
Q ss_pred hHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCC
Q 037870 229 IPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGP 308 (511)
Q Consensus 229 ~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
...++..+..+.+||++.++++.+ .+.....++..++.+.++++|.++.......+............+.|.+.. +
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l 236 (393)
T PRK11195 161 LIYLLAALFNLFIPRLGARRPGQS-WNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA---L 236 (393)
T ss_pred HHHHHHHHHHhcCCCCcccccccC-CCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---c
Confidence 655554455567777653322110 000011112223345667788766544433222221111111222333333 6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHH
Q 037870 309 AFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 388 (511)
Q Consensus 309 g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
|+++.+.|.+.....++.+++.++.+++.||.++++.+..+..+. + ....+.. .++.+..+....+.++
T Consensus 237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~-~---~~~~~~~-------~~~~~~~~~~~~~~G~ 305 (393)
T PRK11195 237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMG-L---VVLLMAL-------QHSLLPAYPLLILIGA 305 (393)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH-H---HHHHHHH-------HhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999988887776653222 1 1111111 0112222333345566
Q ss_pred HHHhhHhHHHHHHhhcCCCcc-hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 389 ISKIRWIPMIVLSTRLCPIGI-EGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~-~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
+.+...++..+.+++..|++. +|++.|+.+...+++..++..+.+.+ +.+|..
T Consensus 306 ~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~ 359 (393)
T PRK11195 306 LGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVP 359 (393)
T ss_pred hhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCC
Confidence 667777778888888777655 79999999999999999999999855 555544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=234.34 Aligned_cols=344 Identities=12% Similarity=0.006 Sum_probs=215.9
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCC--hhHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGK--LPIA 154 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~--~~~~ 154 (511)
...+|. +.++ |++..+.|++.+...+++.+ +|++|+++||+ +||++++.+.++.+++.+.+++.+. .+..
T Consensus 49 ~~~~p~-l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-----g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 121 (452)
T PRK11273 49 ALAMPY-LVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAGLILAAAVMLFMGFVPWATSSIA 121 (452)
T ss_pred HHhhHH-HHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----CCchhHHHHHHHHHHHHHHHHhhhcccccHH
Confidence 345565 4565 99999999999999999888 99999999996 6777888888888888887777531 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHH-HHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGS-LIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~-~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
.++..+++.+++.+...+.....+.+.. ++++|++.+++++.+.++|. +.+|+++..+....|||+.|++.+++.++
T Consensus 122 ~~~~~~~l~gi~~g~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~ 199 (452)
T PRK11273 122 VMFVLLFLCGWFQGMGWPPCGRTMVHWW--SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAIL 199 (452)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhC--ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566677888887777666666777766 34569999999999999886 45665544444445999999998877766
Q ss_pred -HHHHHhhccccccccc--chhh-hh-------hhhhHHHHHHH--HHHhccCCcchHHHHHHHHHhhhccCcccceeee
Q 037870 234 -LIVLGFVIYETRSANI--RSEK-KK-------VMENVEFTTKG--MYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYW 300 (511)
Q Consensus 234 -~~~~~~~~~e~~~~~~--~~~~-~~-------~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
..+..+++||++++.. +.++ ++ ..++.+...++ ....+|++.+|...+..++.....+......+.+
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~ 279 (452)
T PRK11273 200 VALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 279 (452)
T ss_pred HHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566776544211 0000 00 00000000111 1236778888876665554443333322333444
Q ss_pred eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC--CChHHHHHH-HHHHHHhhhhhHHHhhhcccccCCCchh
Q 037870 301 YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY--PLRNLLFSA-QLLYGISGMLDLIFILRWNLALGIPDSF 377 (511)
Q Consensus 301 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (511)
..+. .|++..+.+.+..+..++.+++.++.|++.||+ ++|+..... ..+..+. +....... .....
T Consensus 280 l~~~---~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~-~~~~~~~~-------~~~~~ 348 (452)
T PRK11273 280 LKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA-TIVYWLNP-------AGNPT 348 (452)
T ss_pred HHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH-HHHHHHhc-------ccChH
Confidence 4333 578888888888888888999999999999998 444332221 1111111 11111110 01111
Q ss_pred hhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhcc
Q 037870 378 FVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLT-SKWGGGIVLHLLHV 441 (511)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~-g~~l~g~l~~~~g~ 441 (511)
..+......+...............|.+|++.+|+++|+.+...++|+.+ +|.++|.+.|.+|+
T Consensus 349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~ 413 (452)
T PRK11273 349 VDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 413 (452)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcc
Confidence 11111111121111111122345569999999999999999999998765 79999999998774
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=233.59 Aligned_cols=336 Identities=13% Similarity=0.095 Sum_probs=232.6
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
....|.+ ++++|+|..+.|++.+++.+++.+ +|++|+++||+ +||+.+..+.++.+++.+.++++++.. .+
T Consensus 23 ~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-----G~r~~~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (377)
T TIGR00890 23 TLLAPPL-GRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-----GPRAVAMLGGILYGLGFTFYAIADSLA--AL 94 (377)
T ss_pred hhHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-----CccchhHHhHHHHHHHHHHHHHHHHHH--HH
Confidence 3445554 455999999999999999999988 99999999996 677788888888899998888888644 35
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHH-
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLI- 235 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~- 235 (511)
++.+++.+++.+.........+.+.. +++|+++.++...+.++|..+++++.+.+.+..|||+.|++.++..++..
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 171 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWF---PDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIV 171 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHc---CcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 66777888888776655555555554 34689999999999999998887777788888899999999888877754
Q ss_pred HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHH
Q 037870 236 VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFV 315 (511)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 315 (511)
..+++++|+++++.+++++ .+ +...+.++.+++|.++...+..++............+.+.. +.|.++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 242 (377)
T TIGR00890 172 LGAFLIGYPPGQLIKTNIE---VS--VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQ----SLGLSDGFL 242 (377)
T ss_pred HHHHheecCchhccccCcc---cc--hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHH----HcCCCHHHH
Confidence 3444555443322111000 00 11123456778888776655444332221111111122222 257888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHh
Q 037870 316 GLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWI 395 (511)
Q Consensus 316 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
+.+.....++.+++.++.+++.||+++|+.+..+..+..+..+... ... .......+....+.++..+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 243 VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML-FIP-------MLNDVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-Hcc-------cchhHHHHHHHHHHHHHhccchh
Confidence 8888888999999999999999999999988777555544322211 111 00111111222233444444444
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 396 PMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 396 ~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
....+..|..|++++|+.+|+.+...++|..++|.+.|.+.+..|+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 360 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF 360 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 5566788999999999999999999999999999999999987664
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=231.49 Aligned_cols=360 Identities=13% Similarity=0.099 Sum_probs=232.2
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+...+..++..+.+|.++++++|.|..+.|++.+++.+++.+ +|+.|+++||+ +||++++.+.++.+++.+.+.
T Consensus 25 ~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~~~~~~~~~~~~ 99 (399)
T PRK05122 25 FISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-----GPKKAVVFGLCGCALSGLLYL 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-----CCcchHHHHHHHHHHHHHHHH
Confidence 444555566677888888777999999999999999999888 99999999996 678888888877766655544
Q ss_pred hc---CCh---hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 037870 147 LL---GKL---PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220 (511)
Q Consensus 147 ~~---~~~---~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw 220 (511)
++ ++. ....+++.|++.|++.+...+....++.+.. ++++|+++.++...+.++|.++|+.+++.+.+++||
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 177 (399)
T PRK05122 100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRV--GALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGL 177 (399)
T ss_pred HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhc--ChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccH
Confidence 32 221 2345678889999999988888778877877 345689999998899999999999999999999999
Q ss_pred hhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeee
Q 037870 221 QGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYW 300 (511)
Q Consensus 221 ~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
+..+++.++..++..+.....|++++++.+ + .+.++ .+++ .+.......+............+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (399)
T PRK05122 178 AGLGLLIMLLALLGLLLARPRPAVPPVKGE---R---LPFRR-------VLGR--VWPYGMGLALASIGFGTIATFITLY 242 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCcc---c---hhHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887766554433332223332211100 1 11111 1111 1111111111111111111111112
Q ss_pred eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhh
Q 037870 301 YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 380 (511)
Q Consensus 301 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (511)
..+ .|++ ..+.......++.+++.++.+++.||+++|+.+..+..+..+..+.. .. .++.+..+
T Consensus 243 ~~~----~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~ 306 (399)
T PRK05122 243 YAA----RGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLL---WL-------APSPWMAL 306 (399)
T ss_pred HHH----cccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH---HH-------hccHHHHH
Confidence 222 2332 33444566677888899999999999999988777655444322211 11 11222223
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHH
Q 037870 381 TEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLR 460 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 460 (511)
...++.+++.+..++.......+..|++++|+++|+++...++|..+++.+.|.+.+..|++ ..+.+.+++.
T Consensus 307 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~--------~~~~~~~~~~ 378 (399)
T PRK05122 307 IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYP--------SIFLAAALAA 378 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--------HHHHHHHHHH
Confidence 33345555555555555566778899999999999999999999999999999999876532 3344444555
Q ss_pred HHHHHHHhhcCCC
Q 037870 461 LATLGLIFLVPKA 473 (511)
Q Consensus 461 ~~~~~~~~~~~~~ 473 (511)
+++++....++++
T Consensus 379 ~~~~~~~~~~~~~ 391 (399)
T PRK05122 379 LLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHhccc
Confidence 5555555555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=228.60 Aligned_cols=328 Identities=17% Similarity=0.134 Sum_probs=230.0
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
...+.+|.+.++ +|+|..+.|++.+.+.+++.+ +|+.|+++||+ +||+++..+..+++++.+.+++++++..
T Consensus 27 ~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-----G~r~~l~~~~~l~~~~~~~~~~a~~~~~- 99 (393)
T PRK09705 27 SVGPLLPQLRQA-SGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-----SERRSVAISLLLIAVGALMRELYPQSAL- 99 (393)
T ss_pred ccchhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHCcchHH-
Confidence 345667776554 999999999999999999888 99999999995 7899999999999999999999997654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhhHHHHhhhHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL-GPQGALGVLAIPPVL 233 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~-gw~~~f~~~~~~~~i 233 (511)
++..|+++|++.+...+....++.+..+ ++|+++++.+..+...|..+|+.+++++.++. +||+.+.+.++..++
T Consensus 100 -ll~~r~l~Gig~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 100 -LLSSALLGGVGIGIIQAVMPSVIKRRFQ---QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred -HHHHHHHHHhHHHHHhhhhhHHHHHHcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5778999999999888877777776652 56899999999999999999999999998875 899988776555444
Q ss_pred HHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChh
Q 037870 234 LIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQE 313 (511)
Q Consensus 234 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 313 (511)
..+.++...+++++++++ ++ ...++.+++|+.|...+..++............+.+..+ .|++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~----~g~s~~ 240 (393)
T PRK09705 176 ALFAWWWQSAREVASSHK--TT---------TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE----IGASAQ 240 (393)
T ss_pred HHHHHHHHhcCCCccccC--CC---------cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCChh
Confidence 333333222221111100 00 011344566766655554443333222222223333322 588999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhh
Q 037870 314 FVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIR 393 (511)
Q Consensus 314 ~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
+.|.+.....++.+++.++.+++.||.++|+.+..+..+..+...... ... . ...... ..+.++..+..
T Consensus 241 ~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~-~~~-------~-~~~~~~--~~l~g~g~g~~ 309 (393)
T PRK09705 241 YSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFI-WLP-------L-QLPVLW--AMVCGLGLGGA 309 (393)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-Hcc-------c-hHHHHH--HHHHHHhccch
Confidence 999999999999999999999999999999888776544443222111 111 0 111111 11223333444
Q ss_pred HhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 394 WIPMIVLSTRLC-PIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 394 ~~~~~~~~~~~~-p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
.+.......+.. |++++|+.+|+.+...+++..++|.+.|++.|..|
T Consensus 310 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g 357 (393)
T PRK09705 310 FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG 357 (393)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444455555 46789999999999999999999999999999876
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=225.73 Aligned_cols=325 Identities=13% Similarity=0.018 Sum_probs=210.5
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
.+.+|.+.+| +|+|..+.|++.+.+.+++.+ +++.|+++||+ +||++++.+......+.......++ ...+
T Consensus 11 ~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~--~~~l 82 (368)
T TIGR00903 11 SPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-----FKRWFLFGSLATFAAAAGRLLDPFN--YEWL 82 (368)
T ss_pred HhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHHHHHHhcc--HHHH
Confidence 3456666555 999999999999999999888 89999999996 5666665544444343322222243 4457
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH-HH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL-LI 235 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i-~~ 235 (511)
++.|++.|++.+.. ......+.+..+ +++|+++.++.+.+..+|.++++++++++.+++|||+.|++.+++.++ ..
T Consensus 83 ~~~R~l~G~g~~~~-~~~~~~~~~~~~--~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 83 LACQLLAALGQPFL-LNAFAPAASQIR--EERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHhHhHHH-HHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 88899999998764 344455567663 467999999999999999999999999999999999999998888776 44
Q ss_pred HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHH
Q 037870 236 VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFV 315 (511)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 315 (511)
+.++++||+++++.+. .+ .++..+++++++++|.+|...+..++.....+...+..+.+..+ .|++.. .
T Consensus 160 ~~~~~lp~~p~~~~~~--~~----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~----~g~s~~-~ 228 (368)
T TIGR00903 160 LVLAALPALPFQAAEG--FG----FKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP----AGLEDI-A 228 (368)
T ss_pred HHHHHcCCCCCCCCCC--cc----hHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCChH-H
Confidence 5666788876543211 00 01112356788999999888777766655555444444444432 456654 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC---CChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHh
Q 037870 316 GLIYALGAVASMIGVLIYHKTLKDY---PLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKI 392 (511)
Q Consensus 316 g~~~~~~~~~~~~~~~~~~~l~~r~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
+....+..+.+.++. +++.||. ++|+.......+... +....+.. . . .....+....+.+++...
T Consensus 229 ~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a--~~~~~~~~--~----~-~~~~~~~~~~l~~~~~~~ 296 (368)
T TIGR00903 229 GDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIA--AFFLALAF--E----L-NRLALFAFIGIAGLLMLP 296 (368)
T ss_pred HHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHH--HHHHHHHH--c----c-ccHHHHHHHHHHHHhhhh
Confidence 544444444444443 4444444 333433321111111 11111111 0 0 111112222233333444
Q ss_pred hHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 037870 393 RWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVL 436 (511)
Q Consensus 393 ~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~ 436 (511)
.+.....+.+|..|++.||++.|+.+...++++.++|.+.+.+.
T Consensus 297 ~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 297 AYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred hHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 44456677889999999999999999999999999999988776
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-26 Score=228.48 Aligned_cols=347 Identities=16% Similarity=0.177 Sum_probs=248.9
Q ss_pred ccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh-
Q 037870 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL- 147 (511)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~- 147 (511)
..+...+...+++.++.+ .+-|+..++++.++..+|..+ +++.|.++||+ .||++++.+.++.++....+++
T Consensus 22 S~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-----drrrili~~~~~~~~~~~~L~~l 95 (524)
T PF05977_consen 22 SNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRF-----DRRRILILSQLLRALVALLLAVL 95 (524)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cchHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566766666 788999999999999999876 99999999996 6888888888776655444332
Q ss_pred --cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHH
Q 037870 148 --LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALG 225 (511)
Q Consensus 148 --~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~ 225 (511)
....+.+.+++..++.+++.++..++.++++.++.++ ++..++.++.....++..++||.++|.++..+|-.++|.
T Consensus 96 ~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~--~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 96 AFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK--EDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred HHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3333455567778899999999999999999999955 446777888889999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHH-HHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecC
Q 037870 226 VLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKG-MYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDP 304 (511)
Q Consensus 226 ~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (511)
+.++..++.+......+.++.+... .++ +..+..++ ++.+.++|.++..++..++...+.......++++..+.
T Consensus 174 inalsfl~~i~~l~~~~~~~~~~~~-~~e----~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~ 248 (524)
T PF05977_consen 174 INALSFLISILALLRWKPPPPPSSL-PRE----RFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV 248 (524)
T ss_pred HHHHHHHHHHHHHHHcccccccccc-chh----hhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 9988777755444444433222111 111 22222222 33344456655554444443333222233344444444
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHH
Q 037870 305 KAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQC 384 (511)
Q Consensus 305 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
+|.++..+|++.+..++|.++|.++.+++.+|.+.++++..+.++..+..+ .+.. .++.+..+...+
T Consensus 249 ---l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~---~lal-------~~~~~~~~~~l~ 315 (524)
T PF05977_consen 249 ---LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALL---LLAL-------SPSFWLALIALF 315 (524)
T ss_pred ---hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHH---HHhc-------chHHHHHHHHHH
Confidence 688999999999999999999999999999999988887776555443221 1111 122333333444
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 385 VSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
+.+++.........+.+++.+|++.+|+++++++++...+..+|.++.|.+.+.+|..
T Consensus 316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~ 373 (524)
T PF05977_consen 316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVR 373 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 5566666667777788899999999999999999999999999999999999988754
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=230.71 Aligned_cols=386 Identities=8% Similarity=0.020 Sum_probs=234.7
Q ss_pred HHHHHHHhhcccccccchhhhhhhhhhccc--CCChHHHHHHHH-----Hhhcchhh-hhHHHhhhcccccCCCCCchHH
Q 037870 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQ--KVQPSVVQIYIG-----LCYLPSVM-KPIWGLFTDAFPIKGYHRRPYF 131 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~s-----~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l 131 (511)
......+ +.+.++........|.+..+++ +.++. .+++.+ +..++..+ +++.|+++||+ +||+.+
T Consensus 25 ~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-----Grr~~l 97 (438)
T PRK09952 25 LGSFAGA-VVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-----GRKRML 97 (438)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-----ccHHHH
Confidence 3344444 4555555555555555555444 67766 455432 22233334 56789999996 788899
Q ss_pred HHHHHHHHHHHHHHHhcCChhH------HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHH
Q 037870 132 VIAGVAGCVSALMFSLLGKLPI------AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSL 205 (511)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 205 (511)
+.+.++.+++++++++++++.. ..+++.|+++|++.+...+....++.|..+ +++|++..+..+.+..+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p--~~~rg~~~~~~~~g~~~G~~ 175 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP--KNKKAFYSSGVQVGYGVGLL 175 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC--CCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999998652 246778999999999988888888899874 46689999988888889988
Q ss_pred HHHHHHHHhh--------ccCChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcch
Q 037870 206 IGYAVSGFSV--------NHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVW 277 (511)
Q Consensus 206 lg~~~~g~l~--------~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (511)
++..+...+. ..+|||.+|++.+++.++........||+++..++.++++ +.++........+++|+.+
T Consensus 176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 252 (438)
T PRK09952 176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQA---AAKKRIPVIEALLRHPGAF 252 (438)
T ss_pred HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcc---cccccCCHHHHHHHchHHH
Confidence 8887776654 3579999999887765544444445566543221110000 0000001112244566655
Q ss_pred HHHHH-HHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 037870 278 KPSLY-MYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGIS 356 (511)
Q Consensus 278 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~ 356 (511)
..... .++.....+......+.|.... .|++......+....++..+++.++.|++.||+++|+.+..+.++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~---~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~ 329 (438)
T PRK09952 253 LKIIALRLCELLTMYIVTAFALNYSTQN---LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLS 329 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 54332 2221211222222222333222 5777776555555566777888889999999999999887765443332
Q ss_pred hhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHH-HHHHhHHHHHHHHH
Q 037870 357 GMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCID-SIGSLTSKWGGGIV 435 (511)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~-~lg~~~g~~l~g~l 435 (511)
.+....... ........+....+.++..+........+..|.+|++.|++..|+..... .+++.++|.+.|++
T Consensus 330 ~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l 403 (438)
T PRK09952 330 AFPFFMALE------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAAL 403 (438)
T ss_pred HHHHHHHHH------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 211111110 01111122222233344445555666778889999999999999966554 48899999999999
Q ss_pred HHHhccCCCCccchHHHHHHHHHHHHHHHHHHhhcCC
Q 037870 436 LHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPK 472 (511)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
.+..+. ++ ...+.+..++.+++.+....+++
T Consensus 404 ~~~~~~---~~---~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 404 VTYFGG---SW---HSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred HHhcCC---Cc---hHHHHHHHHHHHHHHHHHHHccc
Confidence 886431 12 22334444445555555555554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=226.03 Aligned_cols=334 Identities=12% Similarity=0.060 Sum_probs=226.1
Q ss_pred cccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh
Q 037870 69 SQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL 147 (511)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~ 147 (511)
..+.......+.+|.+.++ +|.+..+.|++.+...+++.+ +|++|+++||+ +||+.+..+.++.+++.+++++
T Consensus 14 ~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~l~~~ 87 (382)
T PRK10091 14 GLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRY-----SLKHILLFLVALCVIGNAMFTL 87 (382)
T ss_pred HHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-----ccHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455567776554 999999999999999999888 99999999995 7888999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHh
Q 037870 148 LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVL 227 (511)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~ 227 (511)
+++.+. +++.+++.|++.+...+....++.+..+ +++|+++++....+..+|..+|+++++++.+..|||++|++.
T Consensus 88 ~~~~~~--l~~~r~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 88 SSSYLM--LAIGRLVSGFPHGAFFGVGAIVLSKIIK--PGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred hCcHHH--HHHHHHHHHhhhHHHHHHHHHHHHHhCC--hHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 887554 5677889999888877777777777763 355888999999999999999999999999999999999998
Q ss_pred hhHHHHHH-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCC
Q 037870 228 AIPPVLLI-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKA 306 (511)
Q Consensus 228 ~~~~~i~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
++..++.. ...+++||.+++++. +. ++..+.++++..+...+..++............+.+..+.
T Consensus 164 ~~~~~~~~~~~~~~lp~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 229 (382)
T PRK10091 164 AVFNIAVLASIYFWVPDIRDEAKG--------GL----REQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-- 229 (382)
T ss_pred HHHHHHHHHHHHHhCCCCCccccc--------CH----HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 88776643 345567765432111 01 1123456777666554433332221111111111122222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
.|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+..+..+..+....... ..+..+....+.
T Consensus 230 -~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~ 299 (382)
T PRK10091 230 -SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG---------MKTASLIFAFIC 299 (382)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHH
Confidence 6899999999989999999999999999999999998888775554433222111111 111111111122
Q ss_pred HHHHHhhHhHHHH-HHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 387 HIISKIRWIPMIV-LSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 387 ~~~~~~~~~~~~~-~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
+........+... ...+..|++.++... .+...++|..+||.++|++.|.
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 300 CAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred HHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHc
Confidence 2222222233333 333444555566543 4677899999999999999985
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=235.50 Aligned_cols=353 Identities=11% Similarity=0.063 Sum_probs=214.2
Q ss_pred ccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH---h
Q 037870 72 FSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS---L 147 (511)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~---~ 147 (511)
...+...+.+|.++++++|+|+.++|++.++..+...+ +|++|+++||+ +||+.++++....++...... .
T Consensus 24 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~ 98 (420)
T PRK09528 24 FIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-----GLKKHLLWIISGLLVLFGPFFIYVF 98 (420)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345567788888888999999999999999999887 99999999996 566666665444433322111 1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHh
Q 037870 148 LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVL 227 (511)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~ 227 (511)
.+. .........++.++..+.........+.++.++.+++++..++......++|..++|+++|.+.+ .+|+.+|++.
T Consensus 99 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~ 176 (420)
T PRK09528 99 APL-LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLG 176 (420)
T ss_pred HHH-HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHH
Confidence 110 00001111222222222222222222233332223456777888888899999999999999886 4899999998
Q ss_pred hhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCC
Q 037870 228 AIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAG 307 (511)
Q Consensus 228 ~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (511)
++..++..+..++.+++++++.+.++++..++.+...++.++.+|+|.++...++.+.............+.+..+...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (420)
T PRK09528 177 SGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFAT 256 (420)
T ss_pred HHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87776654444444332222110000000001112234566788899887665543333221111111222222222112
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
.+.+..+.|.+..+..++..++.++.+++.||+++|+.+..+.++..+..... .+ .++.+..+....+.+
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~-~~---------~~~~~~~~~~~~l~g 326 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGS-GF---------ATGPLEVSILKLLHA 326 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH-Hh---------cccHHHHHHHHHHHH
Confidence 35677788988888888889999999999999999998877755554422211 11 112222223333444
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHH-HHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFAL-LMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl-~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
...+........++.+..|++.+++.++. +++..++|..+++.+.|++.|.+|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~ 381 (420)
T PRK09528 327 FEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGF 381 (420)
T ss_pred HHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 44445555556677888999999988766 6778899999999999999998764
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=232.88 Aligned_cols=363 Identities=15% Similarity=0.128 Sum_probs=229.7
Q ss_pred HHHHHHHhhcccccccchhhhhhhhhhc-------ccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHH
Q 037870 60 FGIILVYGLSQGFSGSFSKVVTDYYWKD-------VQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYF 131 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l 131 (511)
+...... +..++.........|.+.++ +++.+..+.+++.+++.++..+ ++++|+++||+ +||+.+
T Consensus 15 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-----Grr~~~ 88 (479)
T PRK10077 15 LVATLGG-LLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GRRDSL 88 (479)
T ss_pred HHHHHHH-HhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHH
Confidence 3333333 66777777766666654332 2389999999999999999888 99999999996 688888
Q ss_pred HHHHHHHHHHHHHHHhc---------CChh-HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHH
Q 037870 132 VIAGVAGCVSALMFSLL---------GKLP-IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSA 201 (511)
Q Consensus 132 ~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 201 (511)
+++.++..++.+.+++. ++.. +..+++.|+++|++.+...+...+++.|+.+ +++|++++++.+.+..
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~--~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP--AHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC--hhhhhHHHHHHHHHHH
Confidence 88888888877776653 1222 3456788999999999999999999999984 4669999999999999
Q ss_pred HHHHHHHHHHHHhh--------ccCChhhHHHHhhhHHHHHHHHHhhccccccccc---chhhhh-h------hhhHHHH
Q 037870 202 AGSLIGYAVSGFSV--------NHLGPQGALGVLAIPPVLLIVLGFVIYETRSANI---RSEKKK-V------MENVEFT 263 (511)
Q Consensus 202 ~G~~lg~~~~g~l~--------~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~---~~~~~~-~------~~~~~~~ 263 (511)
+|.++++.+++.+. +..|||+.|++.+++.++..+..+++||++++.. +.++.+ . .++.++.
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence 99999988776553 3569999999988777776556677888764311 110000 0 0000111
Q ss_pred HHHHHHhcc-----CCcchHH----HHHHHHHhhh-ccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 037870 264 TKGMYKSMK-----CPQVWKP----SLYMYLSLAV-SISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIY 333 (511)
Q Consensus 264 ~~~~~~~l~-----~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 333 (511)
.++.++.++ .+..+.. .......... .........++.+......|++....+......++..+++.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 326 (479)
T PRK10077 247 LQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLA 326 (479)
T ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 112222221 1111111 0100000000 00001111122222112256766666666667778888999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhH-hHHHHHHhhcCCCcchHH
Q 037870 334 HKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRW-IPMIVLSTRLCPIGIEGT 412 (511)
Q Consensus 334 ~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~g~ 412 (511)
+++.||+++|+.+..+..+..+..+....... . ..+..+ .+....+..+..+... +....+++|..|+++||+
T Consensus 327 g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~--~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 400 (479)
T PRK10077 327 IMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--T---QAPGIV-ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGK 400 (479)
T ss_pred HHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh--c---CcccHH-HHHHHHHHHHHHhccccchhHHHhHhhCChhHHHH
Confidence 99999999999998887666654332221111 0 011111 1111122222233222 334677889999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 037870 413 FFALLMCIDSIGSLTSKWGGGIVL 436 (511)
Q Consensus 413 ~~gl~~~~~~lg~~~g~~l~g~l~ 436 (511)
++|+.+...+++..+++.+.+.+.
T Consensus 401 ~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 401 ALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999988877655
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=230.05 Aligned_cols=385 Identities=15% Similarity=0.139 Sum_probs=249.7
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhccc-ccCCCCCchHHHHHHHHHHHHHHHHHhcCChh-
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAF-PIKGYHRRPYFVIAGVAGCVSALMFSLLGKLP- 152 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~-~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~- 152 (511)
.....+++|+++++|+++.++|.+.++..+..++ +|+.|.++||. .++| ||||+++.+.+..+++..++...|+.+
T Consensus 27 ~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G-rrrp~il~~~~~~~i~~~l~f~~p~~~~ 105 (444)
T PRK09669 27 TVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG-QFRPYLLWFAIPFGVVCLLTFYTPDFGA 105 (444)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC-CcchhHHHHHHHHHHHHHHHHhCCCCCc
Confidence 3355678888888999999999999999988877 99999999998 4566 889999988888877776666565422
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc-------cCChhh
Q 037870 153 ---IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN-------HLGPQG 222 (511)
Q Consensus 153 ---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~-------~~gw~~ 222 (511)
...+++..++.+.+.....++..++.+|+.++ +++|.+..++...+.++|..+++.+...+.. ..||+.
T Consensus 106 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~-~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~ 184 (444)
T PRK09669 106 TGKIIYACVTYILLSLVYTAINVPYCAMPGAITND-PRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY 184 (444)
T ss_pred chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence 23344445555666667777788899988753 3568888888888888888887765554432 347888
Q ss_pred HHHHhhhHHHHH-HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeee
Q 037870 223 ALGVLAIPPVLL-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWY 301 (511)
Q Consensus 223 ~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
.+.+.+++.++. .+.++..+|+..++.++ + . +..++++..+|||.++..++..++.............|+.
T Consensus 185 ~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~--~---~---~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 256 (444)
T PRK09669 185 AMMVMGLLGVVLFFCCFFMTKERYTPEVDN--S---S---SVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYV 256 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEecCCCCcC--C---C---CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheee
Confidence 888877776664 34445556653322110 1 1 1224567778999887776654443332222222334555
Q ss_pred ecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhH
Q 037870 302 TDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVIT 381 (511)
Q Consensus 302 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (511)
... .+ ++...+.+.....+..+++.++.+++.||+++|+.+..+.++..+...... +. ...+.+..+.
T Consensus 257 ~~~---~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~ 324 (444)
T PRK09669 257 NYV---LL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIF-FI-------PPSNVWLIFA 324 (444)
T ss_pred eee---cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-Hh-------CcchHHHHHH
Confidence 443 22 233444455666788888989999999999999988877554443222111 11 1112222333
Q ss_pred HHHHHHHHHHhhHhHHHHHHhhcCC-------CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCC-ccch----
Q 037870 382 EQCVSHIISKIRWIPMIVLSTRLCP-------IGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTD-FTNL---- 449 (511)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~-~~~~---- 449 (511)
..++.++..+...+...+++.|.++ ++.+|..+|..+...++|..+|+.++|.+.+..|+..+. -+.-
T Consensus 325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~~~~~q~~~~~~ 404 (444)
T PRK09669 325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVGGAAVQSASVLT 404 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 3445566666666666777777664 466789999999999999999999999999999986332 1221
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhcCCCCcCcCccch
Q 037870 450 ---WLVILIRNVLRLATLGLIFLVPKADQSDELIPV 482 (511)
Q Consensus 450 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (511)
.....+.+++.+++++++.+.|-++++.++..+
T Consensus 405 ~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~i~~ 440 (444)
T PRK09669 405 TINLLFTVIPGVLFAGMAIILNFYKLNDARVEAIAQ 440 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 111223334445555555566665554433333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=234.82 Aligned_cols=345 Identities=14% Similarity=0.046 Sum_probs=235.4
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
....|.+ .+++|.+..+.|++.+++.++..+ .+++|+++||+ +||+.+..+.++..++..+++++++.. .+
T Consensus 14 ~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~ 85 (399)
T TIGR00893 14 SFAAPML-QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-----GARKTLAVFIVIWGVFTGLQAFAGAYV--SL 85 (399)
T ss_pred hHhHHHH-HHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-----CcceeeHHHHHHHHHHHHHHHHHcCHH--HH
Confidence 3345554 455999999999999999999887 99999999996 677788888888888888888887544 46
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV 236 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~ 236 (511)
++.+++.|++.+...+....++.|..+ +++|++..++.+...++|.++++.+++.+.+..+||+.|++.++..++..+
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFP--ASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCC--HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 778899999999988888999999884 356899999999999999999999999999999999999998887776443
Q ss_pred -HHhhcccccccccch-hhhhhh--hh----------HHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeee
Q 037870 237 -LGFVIYETRSANIRS-EKKKVM--EN----------VEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYT 302 (511)
Q Consensus 237 -~~~~~~e~~~~~~~~-~~~~~~--~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
..+..||++.++... ++++.. +. .++.....++.+++|+++...+..++............+.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (399)
T TIGR00893 164 LWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLV 243 (399)
T ss_pred HhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444455544322111 000000 00 0001123456777887776665554443322222222333333
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChH--HHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhh
Q 037870 303 DPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRN--LLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 380 (511)
Q Consensus 303 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (511)
+. .|+++.+.+.+.....++.+++.++.+++.||+++|+ ....... .....+.........+ ..+..+..+
T Consensus 244 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~ 316 (399)
T TIGR00893 244 QE---RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKT-AIIAGLVLSLLMFATN---YVNIPYAAL 316 (399)
T ss_pred HH---hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHHHHhc---cchhHHHHH
Confidence 32 6888889999888888999999999999999999885 1111111 1111011111100000 011112222
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 381 TEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
....+..+..+ ..+....+..|..|+++||+++|+.+...++|..++|.+.|.+.+..|
T Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 317 ALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 22222222222 456667788899999999999999999999999999999999988654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=223.72 Aligned_cols=336 Identities=13% Similarity=0.110 Sum_probs=227.7
Q ss_pred ccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhcccc--cCCCCCchHHHHHHHHHHHHHHHHHhcCCh
Q 037870 74 GSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFP--IKGYHRRPYFVIAGVAGCVSALMFSLLGKL 151 (511)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~~--~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~ 151 (511)
..+....+|.++++ +|+|.+++|++... .+++.+++++|+++||+. ++| |||++++.+.+..+++...+++.++.
T Consensus 4 ~~~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~~~~~g~~~Dr~~~~~~G-rr~~~l~~~~~~~~~~~~~l~~~~~~ 80 (356)
T TIGR00901 4 LGLVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSLKFLWSPLVDTVYLPFFG-RRRSWLVLTQVLLLSLLLILSFLVPS 80 (356)
T ss_pred chhHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCCC-ccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34455677888776 89999999998655 677767999999999983 345 67777888888888887777776432
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC--------hhh
Q 037870 152 -PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG--------PQG 222 (511)
Q Consensus 152 -~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g--------w~~ 222 (511)
....+....++.+.+.+..+++.++++.|..+ +++|+++.++...+.++|.++++.+++.+.+..| ||.
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILS--DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY 158 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence 22234444556678888889999999999984 4669999999999999999999999999988888 999
Q ss_pred HHHHhhhHHHHHHHHHh-hcccccccccchhhhhhhhhHHHHHHHHHHhccCCc---chHHHHHHHHHhhhccCccccee
Q 037870 223 ALGVLAIPPVLLIVLGF-VIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQ---VWKPSLYMYLSLAVSISTHEGQF 298 (511)
Q Consensus 223 ~f~~~~~~~~i~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
.|++.++..++..+..+ ..||+++.++.. ++..+ +..+.+++.+++|. ++..++..++............+
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEPQEDASVP--KPLTQ---AVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTT 233 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccccc--hhHHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887766444433 456643321111 11011 11234455666665 44444443333332222223334
Q ss_pred eeeecCCCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhc-ccccCCCch
Q 037870 299 YWYTDPKAGPAFSQEFVGLIYAL-GAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRW-NLALGIPDS 376 (511)
Q Consensus 299 ~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 376 (511)
+|..+ .|+++.++|.+... +.++.+++.++.+++.||+++|+.+..+.++..+............ +...+.+..
T Consensus 234 ~~l~~----~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (356)
T TIGR00901 234 LFLLD----MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL 309 (356)
T ss_pred HHHHH----cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 44433 58999999988754 4467889999999999999999888777655544322222111100 000011222
Q ss_pred hhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 037870 377 FFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSI 423 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~l 423 (511)
+......++.++..+...++...+.+|.+|++++|+++|+.++..++
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 356 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSAL 356 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Confidence 33344445667777888888899999999999999999998887653
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=234.15 Aligned_cols=252 Identities=12% Similarity=-0.019 Sum_probs=166.8
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
.+.+|.+.+ ++|++..+.+++.+.+.+++.+ +++.|+++||+ +||+.+..+.++.+++.++++++++... +
T Consensus 56 ~~~~~~l~~-~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----G~r~~~~~~~~~~~~~~~~~~~~~s~~~--l 127 (476)
T PLN00028 56 APLLPIIRD-NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-----GPRYGSAFLLMLTAPAVFCMSLVSSATG--F 127 (476)
T ss_pred HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHhcCHHH--H
Confidence 345566544 5999999999998888888887 89999999996 6777888888888888888888876543 4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhh----c-----cCChhhHHHHh
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSV----N-----HLGPQGALGVL 227 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~----~-----~~gw~~~f~~~ 227 (511)
++.+++.|++.+... ....++.++. ++++|+++.++.+...++|..+++.+.+.+. + ..|||+.|++.
T Consensus 128 ~~~r~l~G~~~~~~~-~~~~~i~~~~--~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~ 204 (476)
T PLN00028 128 IAVRFFIGFSLATFV-SCQYWMSTMF--NGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP 204 (476)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHhc--ChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 566788888776543 3445567766 3456999999988777778777766665442 2 25899999999
Q ss_pred hhHHHHHHHHHhhcccccccccchhhhhhhh-hHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCC
Q 037870 228 AIPPVLLIVLGFVIYETRSANIRSEKKKVME-NVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKA 306 (511)
Q Consensus 228 ~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
+++.++..+..+++++++++....+.++..+ +.....+.+++.+++++.|...+..++............+.+....
T Consensus 205 g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-- 282 (476)
T PLN00028 205 GLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-- 282 (476)
T ss_pred HHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh--
Confidence 8888775544444443322211010000000 0001123456677888877665544333222222222223332222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLR 343 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 343 (511)
.|++....+.+..+..++.+++.++.|++.||+++|
T Consensus 283 -~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 283 -FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 689999999888888899999999999999988754
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-26 Score=224.28 Aligned_cols=341 Identities=17% Similarity=0.196 Sum_probs=237.6
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..........+..|.+.++ +|.|..+.|++.+++.++..+ ++++|+++||+ +||+++..+.++..++.+.++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-----GRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHHHHHHHHHHHHH
Confidence 33444445555667766555 999999999999999999887 99999999996 678888888888888888888
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
+.++... +++.+++.+++.+...+..++++.|..+ +++|++..++.+....+|..+|+.+++.+.++.+||+.|++
T Consensus 89 ~~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 89 LSNNIET--LLVLRFVQAFGASAGSVISQALVRDIYP--GEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred HHccHHH--HHHHHHHHHcchhHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 8876443 5677889999999998989999999874 45689999999999999999999999999999999999998
Q ss_pred hhhHHHHHH-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCC
Q 037870 227 LAIPPVLLI-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPK 305 (511)
Q Consensus 227 ~~~~~~i~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (511)
.++..++.. +..+..||+++++++. +.++..++.++.+++|+++...+...+............+++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPYEARI-------QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI- 236 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccC-------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-
Confidence 887776643 3445566654432211 0112234556778888887665544333322222222223333222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
.|+++.+.|.+.....++.+++.++.+++.||+++|+.+..+..+..+..+....... . ..+.....+....+
T Consensus 237 --~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~ 309 (385)
T TIGR00710 237 --MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI--L---GLGSWAMIIGPMMF 309 (385)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--h---ccchHHHHHHHHHH
Confidence 6889999999988889999999999999999999998887765554443222211111 0 01111222222334
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHH
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGI 434 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~ 434 (511)
.++..+...........|..| +.+|++.++.+.....++.+.+.+.+.
T Consensus 310 ~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~ 357 (385)
T TIGR00710 310 VGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL 357 (385)
T ss_pred HHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555566667776 678999999988887666665555553
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-26 Score=225.99 Aligned_cols=332 Identities=16% Similarity=0.103 Sum_probs=226.4
Q ss_pred cchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhH
Q 037870 75 SFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPI 153 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (511)
....+.++.++++++|.|+.++|++.+...++..+ +|+.|+++||+ +||+.++.+.++..++.+.+.+.++.+
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-----g~k~~l~~~~~~~~~~~~~~~~~~~~~- 100 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-----GAKPMIVTGMLMRAAGFATMAIAHEPW- 100 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-----CchHHHHHHHHHHHHHHHHHHHhccHH-
Confidence 34455677777777999999999999998888766 89999999996 688899999999999998888877544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
.+++.+++.+++.+...+...+++.+..+ +++|+++.++.+...++|..+||.++|++. .+|||+.|++.++..++
T Consensus 101 -~l~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~ 176 (400)
T PRK11646 101 -LLWLSCILSGLGGTLFDPPRTALVIKLIR--PHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVL 176 (400)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH
Confidence 35667888898888888888888888874 456999999999999999999999999998 67999999998877666
Q ss_pred HH-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCCh
Q 037870 234 LI-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQ 312 (511)
Q Consensus 234 ~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 312 (511)
.. +..++.||.+.++. + ++ ..+++++.+++|.++...+..+.............+++..+ .+.++
T Consensus 177 ~~i~~~~~~~~~~~~~~----~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~ 242 (400)
T PRK11646 177 AAAFNAWLLPAYKLSTV----R---TP---VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVND----IAGSP 242 (400)
T ss_pred HHHHHHHhCCccccccc----c---hh---hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHh----hcCCc
Confidence 43 33445555322111 0 01 11244567788877655443322221111111223333333 23466
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-ccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHH
Q 037870 313 EFVGLIYALGAVASMIGVLIYHKTL-KDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISK 391 (511)
Q Consensus 313 ~~~g~~~~~~~~~~~~~~~~~~~l~-~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (511)
.+.|.+.....++...+....+++. ||++.++.+..+..+..+..+ .+.. .++....+....+.+...+
T Consensus 243 ~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~---~l~~-------~~~~~~~~~~~~l~~~g~~ 312 (400)
T PRK11646 243 SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMF---PIGM-------VSNLQQLFTLICLFYIGSI 312 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH---HHHH-------hhhHHHHHHHHHHHHHHHH
Confidence 7788877666666655554455555 456656555555433332211 1111 0111222222233444445
Q ss_pred hhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 392 IRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 392 ~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
...++..+...+.+|++++|+++|+.+...++|..+||.++|++.|..+
T Consensus 313 ~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 313 IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 5556667788899999999999999999999999999999999999854
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=226.30 Aligned_cols=343 Identities=13% Similarity=0.104 Sum_probs=231.4
Q ss_pred cccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh
Q 037870 69 SQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL 147 (511)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~ 147 (511)
..........+.+|.++++++|++..++|++.+++.+...+ +|+.|+++||+ +||+.++++.+...++.+++++
T Consensus 18 ~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~k~~~~~~~~~~~~~~~~~~~ 92 (395)
T PRK10054 18 LLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-----DKKRYMLLAITAFASGFIAIPL 92 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CcchhHHHHHHHHHHHHHHHHH
Confidence 33444455566788888888999999999999998888776 99999999996 6778888888888888888888
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHh
Q 037870 148 LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVL 227 (511)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~ 227 (511)
.++... +++.+.+.+.+.+...+...++..|..+ +++|++..++.+...++|.++||.+++++.+ .||+.+|++.
T Consensus 93 ~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 93 VNNVTL--VVLFFALINCAYSVFSTVLKAWFADNLS--STSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 776443 3444555565655556666777777763 3568999999999999999999999999875 7999999988
Q ss_pred hhHHHHHH-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCC
Q 037870 228 AIPPVLLI-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKA 306 (511)
Q Consensus 228 ~~~~~i~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
++..++.. +..+++||++++++++ ++ + ..+.++.+|+|.++...+..++..............+.... .
T Consensus 168 ~~~~~i~~i~~~~~~~~~~~~~~~~--~~------~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~ 237 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRSEKAIATE--TG------S-VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV-A 237 (395)
T ss_pred HHHHHHHHHHHHHHHhccccccccc--hh------h-hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh-c
Confidence 87776643 3445566554322111 10 0 01235678889888776655543332211111111121111 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+.+.+....+.+.....+......+..+++.||.++|+.+..+..+..+..+.. ... ..+.+..+....+.
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~ 308 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGF-IFS--------GNSLLLWGMSAAVF 308 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHH-HHc--------chHHHHHHHHHHHH
Confidence 246677777877777767667777888999999999988777754444322111 111 01112222223344
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
+++.....+.....+.+.+|++.+|++++..+ ...+|..+||.++|.+.|++|.
T Consensus 309 ~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~ 362 (395)
T PRK10054 309 TVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPP 362 (395)
T ss_pred HHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcCh
Confidence 44444444555667889999999999998765 6779999999999999998764
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=238.78 Aligned_cols=352 Identities=12% Similarity=0.051 Sum_probs=254.2
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+...+........+|.+.++ +|.+..+.+++.+.+.++..+ .|+.|+++||+ +||+.++.+.++..++.++++
T Consensus 12 ~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-----GTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHh
Confidence 55666666677788887666 999999999999999999887 89999999996 688888999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
++++... +++.++++|++.+...+...+++.|..+ +++|+++.+++..+..+|..+||.+++++.++.|||+.|++
T Consensus 86 ~~~~~~~--l~~~~~~~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 86 VAPNLEL--MIIFRVIQGFGGGPLIPLSFSTLLNIYP--PEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CcCCHHH--HHHHHHHHHhhhhhHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 8886553 6778999999999998888999999884 45689999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHhhcccccccccchhhh----------------------hhh--h-hHH---------------HHHH
Q 037870 227 LAIPPVLL-IVLGFVIYETRSANIRSEKK----------------------KVM--E-NVE---------------FTTK 265 (511)
Q Consensus 227 ~~~~~~i~-~~~~~~~~e~~~~~~~~~~~----------------------~~~--~-~~~---------------~~~~ 265 (511)
.+.+.++. .+..++.||++++..+..+. ..+ . ... ...+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELT 241 (485)
T ss_pred hhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 88777664 33445566543322111000 000 0 000 0000
Q ss_pred -----HHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037870 266 -----GMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY 340 (511)
Q Consensus 266 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 340 (511)
...+.+++|.++...+..++............+.|..+. .|+++.+.|.+.....++.+++.++.+++.||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~ 318 (485)
T TIGR00711 242 DDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV---LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI 318 (485)
T ss_pred CCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 012456777776665555444333322222334444443 689999999999889999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHH
Q 037870 341 PLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCI 420 (511)
Q Consensus 341 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~ 420 (511)
++|+.+..+..+..+......... . .....+.......+.+++.+....+......+..|++++|+++|+.+..
T Consensus 319 ~~~~~~~~g~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 392 (485)
T TIGR00711 319 DPRKLVTIGLILYAVGFYWRAFTF---T---PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFT 392 (485)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccC---C---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHH
Confidence 999988777555544322211000 0 0111122222344556666666677777777889999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 037870 421 DSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 421 ~~lg~~~g~~l~g~l~~~ 438 (511)
.++|+.+|+.+.|.+.+.
T Consensus 393 ~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 393 RQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=223.44 Aligned_cols=333 Identities=12% Similarity=0.038 Sum_probs=230.6
Q ss_pred ccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCch----HHHHHHHHHHHHHHHHH
Q 037870 72 FSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRP----YFVIAGVAGCVSALMFS 146 (511)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~----~l~~~~~~~~~~~~~~~ 146 (511)
...++..+.+|.++++ +|+|..++|++.+++.+...+ +|++|+++||+ +|+. .+..+..+..+ ..+.
T Consensus 18 ~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~l~~~--~~~~ 89 (382)
T TIGR00902 18 CAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-----NHIIIALRLLALASAIFAA--AFSA 89 (382)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHHHHH--HHHH
Confidence 3345566678888876 999999999999999888776 99999999996 3422 22222211111 2223
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
.+++.+ .+++.+.+.+.+.+...+..+++..+. +++|++..+....+.++|.++||+++|.+.+++|||..|++
T Consensus 90 ~~~~~~--~l~~~~~l~~~~~~~~~p~~~al~~~~----~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 90 GAHNAW--LLFIAIGLFALFFSAGMPIGDALANTW----QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhhhHH--HHHHHHHHHHHHHccchhHHHHHHHHH----HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 445433 355567667777666667777776443 24578889999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHhhcccc-cccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCC
Q 037870 227 LAIPPVLLIVLGFVIYET-RSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPK 305 (511)
Q Consensus 227 ~~~~~~i~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (511)
.++..++..+ .+.++|+ ++++++++ ++ . +..++.++.+|+|+++..++..++.........+..+.+..+
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~--~---~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-- 234 (382)
T TIGR00902 164 LTAGLAFMLI-GFLIKPTIPPKDAIPE-DE--S---QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-- 234 (382)
T ss_pred HHHHHHHHHH-HHHcCCCCCCCccccc-cc--c---ccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 7655333322 2333433 22211110 00 0 112345678899998888776665444333333333333332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
.|.++.++|.+.....++.+++..+.+++.||++.|+.+..+.++..+...... . .++.+..+....+
T Consensus 235 --~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~-~---------~~~~~~~~~~q~l 302 (382)
T TIGR00902 235 --AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG-A---------IEAFPLIFLLQIL 302 (382)
T ss_pred --CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH-h---------HhhHHHHHHHHHH
Confidence 689999999999899999999999999999999999998887666654322211 1 1233444555678
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHH-HHHHHHhHHHHHHHHHHHHhc
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMC-IDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~-~~~lg~~~g~~l~g~l~~~~g 440 (511)
.++..+...+....++++. |++++++..+++++ ...+|..+|+.++|++.|++|
T Consensus 303 ~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 303 HCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888888888888887 98999999999874 567999999999999999875
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-25 Score=222.59 Aligned_cols=356 Identities=10% Similarity=0.002 Sum_probs=238.3
Q ss_pred hHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHH
Q 037870 58 FIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGV 136 (511)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~ 136 (511)
.+......+++...+...+..+.+|.+.+ ++|.+..+.++..+++.+++.+ ++++|+++||+ +||++++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~l~~i~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~l~~~~~ 89 (413)
T PRK15403 16 FFPMALILYDFAAYLTTDLIQPGIINVVR-DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-----GRRPVLITGAL 89 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-----CchHHHHHHHH
Confidence 33444455555555566666777777544 4999999999999999999887 99999999996 68889999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 037870 137 AGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN 216 (511)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~ 216 (511)
+..++.++++++++... +++.|+++|++.+...+...+++.|..+ +++|++.+++...+..+|..+||.+++.+.+
T Consensus 90 ~~~~~~~~~~~a~~~~~--l~~~r~l~Gi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 90 IFTLACAATLFTTSMTQ--FLIARFIQGTSICFIATVGYVTVQEAFG--QTKGIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred HHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988886543 6778999999887666666666777663 3557888999999999999999999999999
Q ss_pred cCChhhHHHHhhhHHHHHHH-HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCccc
Q 037870 217 HLGPQGALGVLAIPPVLLIV-LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHE 295 (511)
Q Consensus 217 ~~gw~~~f~~~~~~~~i~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 295 (511)
+.|||+.|++.++..++..+ .++.+||+++++++. .+.++..++.++.+|||.++...+..++..........
T Consensus 166 ~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~ 239 (413)
T PRK15403 166 FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP------FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVA 239 (413)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCC------CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998887776443 455678765422111 01112335667888999988776655444433332222
Q ss_pred ceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCc
Q 037870 296 GQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPD 375 (511)
Q Consensus 296 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (511)
..+++..+. .|+++.+.++.......+.+++..+.+++.+|...++.......+..++.... ..... . ....
T Consensus 240 ~~P~~l~~~---~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~-~~~~~---~-~~~~ 311 (413)
T PRK15403 240 VSPVILIDA---GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALL-IVGNL---L-WPHV 311 (413)
T ss_pred hChHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHH-HHHHH---H-cccc
Confidence 334344333 68999999998877778888888888888766555454333222222211111 11100 0 0111
Q ss_pred hhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 376 SFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
.+..+....+.+.+.+...+..... +.......+|++.|+.+.....+..+++.++|++.+.
T Consensus 312 ~~~~~~~~~l~~~G~~~~~p~~~~~-al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 312 WLWSVLGTSLYAFGIGLIFPTLFRF-TLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1112222233344444444444322 2222233479999999999999999999999988775
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-26 Score=223.91 Aligned_cols=365 Identities=12% Similarity=0.059 Sum_probs=224.3
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhc-chhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYL-PSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l-~~~~~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..++...+..+.+|.++++++|.|.+++|++.+...+ ++.+++++|.++||++ +||.+++.+.+...++..+.+
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g----~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRG----DRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHHH
Confidence 44555555667788888888899999999999776654 5666777666699962 555556666666666666677
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
++++.... ++..+++.+.+ +...+...++..+..+++.+..+...++.+.+.++|.++||++++++.+++|||..|++
T Consensus 101 ~~~~~~~l-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~ 178 (393)
T PRK15011 101 WNRNYFVL-LFVGVFLSSFG-STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLS 178 (393)
T ss_pred HhhHHHHH-HHHHHHHHHHH-HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHH
Confidence 77654431 22333344443 34555666666665432211123344677788999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCC-cchHHHHHHHHHhhhccCcccceeeeeecC
Q 037870 227 LAIPPVLL-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCP-QVWKPSLYMYLSLAVSISTHEGQFYWYTDP 304 (511)
Q Consensus 227 ~~~~~~i~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (511)
.++..++. ...++++||.++++++. ++ + .+.. .+++ ..+......++.......+....+.+..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 246 (393)
T PRK15011 179 AAVAFIVCGVMVWLFLPSMRKELPLA--TG---T----LEAP---RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINE 246 (393)
T ss_pred HHHHHHHHHHHHHhhcCccCCCCccc--cc---c----cccc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777664 44555677764332211 00 0 0011 1222 222222221221111111111233333332
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHH
Q 037870 305 KAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQC 384 (511)
Q Consensus 305 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
+|+++.+.|.+.....++.+++.++.|++.||+++|+.+..+.....+. +...... .+.+..+....
T Consensus 247 ---~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~l~~~~ 313 (393)
T PRK15011 247 ---LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF-YAGMLMA---------HSPAILLGLQL 313 (393)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHH---------hhHHHHHHHHH
Confidence 6889999998877777778889999999999999998776654333321 1111111 11122222222
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHH
Q 037870 385 VSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATL 464 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
+..+..+..........+|..|+ ++|+++++++...++|..+++.++|.+.+.+|+. ..+.+..++.++++
T Consensus 314 l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~--------~~~~~~~~~~~~~~ 384 (393)
T PRK15011 314 LNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYH--------AVFWFALVMIIATL 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHH
Confidence 33333344444445566788885 5999999999999999999999999999976532 34455556666666
Q ss_pred HHHhhcCC
Q 037870 465 GLIFLVPK 472 (511)
Q Consensus 465 ~~~~~~~~ 472 (511)
+.+++.||
T Consensus 385 ~~~~~~~~ 392 (393)
T PRK15011 385 FCLLRIKD 392 (393)
T ss_pred HHHHhhcC
Confidence 66666654
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=221.63 Aligned_cols=340 Identities=11% Similarity=0.012 Sum_probs=218.9
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH---hcCChh
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS---LLGKLP 152 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~---~~~~~~ 152 (511)
....+++++++ +|.|..+.|++.+.+.+++.+ +|+.|+++||+ +||+.+..+.++.+++.+++. ...+ +
T Consensus 32 ~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-----g~k~~l~~~~~~~~~~~~~~~~~~~~~~-~ 104 (402)
T TIGR00897 32 EQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEII-----GPLKTMMIGLLLWCVGHAAFIVFGLGHA-N 104 (402)
T ss_pred HHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHhccCc-c
Confidence 34456777765 999999999999999999887 99999999996 678888888877777765442 2221 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHH-HHHHHHHHHhhccCChhhHHHHhhhHH
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGS-LIGYAVSGFSVNHLGPQGALGVLAIPP 231 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~-~lg~~~~g~l~~~~gw~~~f~~~~~~~ 231 (511)
...+++.+++.+++.+...+...+.+.+.. ++++|++++|+.+.+.++|. ++||.+++.+.+.+||+..+|......
T Consensus 105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 182 (402)
T TIGR00897 105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNT--KQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFV 182 (402)
T ss_pred HHHHHHHHHHHHcchHHHHhHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 334566788888887766665566666665 34569999999999999996 689999999998899776666544333
Q ss_pred HHH-HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCC
Q 037870 232 VLL-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAF 310 (511)
Q Consensus 232 ~i~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (511)
.+. .+..+..++.++++.++ ++ ++.++..+..+..+|+|.++...+..++............+++..+ .|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~g~ 254 (402)
T TIGR00897 183 LTGGVIALFSNKDIFTPQHMQ-TR---EKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE----LGF 254 (402)
T ss_pred HHHHHHHHhccCCCCCccccc-CC---cchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC
Confidence 332 22333344432211111 01 1111222345567889988766554444333222222223333322 688
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHH-HHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHH
Q 037870 311 SQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFS-AQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHII 389 (511)
Q Consensus 311 s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+..+.+.+.....++..++.++.|++.||+++|+.+.. +.+...+..+....... . .....+..+....+.+..
T Consensus 255 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~----~-~~~~~~~~~~~~~~~G~~ 329 (402)
T TIGR00897 255 STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ----H-FGHSFAVALIIAIALGIF 329 (402)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH----c-cCCcHHHHHHHHHHHHHH
Confidence 99888888888889999999999999999998876542 22222221111111110 0 011122222223333433
Q ss_pred HHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 390 SKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 390 ~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
.+. ..+......+..| +++|+++|+.+...++++.++|.++|.+.+..|
T Consensus 330 ~~~-~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g 378 (402)
T TIGR00897 330 LAG-YVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG 378 (402)
T ss_pred HHH-HHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333 2344455566555 689999999999999999999999999999765
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-26 Score=222.43 Aligned_cols=331 Identities=11% Similarity=0.052 Sum_probs=216.0
Q ss_pred ccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHH---HHhcC
Q 037870 74 GSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALM---FSLLG 149 (511)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~---~~~~~ 149 (511)
.++..+.+|.++++++|.|..++|++.+++.+++.+ +|++|+++||+ +||+.++.+.+.+.++.+. .+..+
T Consensus 31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~ 105 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-----GAKRSALQGMLACGLAGLAYLLAAILP 105 (392)
T ss_pred HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-----cchHHHHHHHHHHHHHHHHHHhhhccc
Confidence 345556677777777999999999999999999888 99999999996 6777777777666554432 22222
Q ss_pred ---ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 150 ---KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 150 ---~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
..+...+++.++++|++.+...+...+++.+.. ++++|++++++...+.+.|..+||++++++.+++|||+.+.+
T Consensus 106 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~--~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 106 VSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLV--GPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 123445678899999999888777777888877 346799999999999999999999999999999999988776
Q ss_pred hhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCC
Q 037870 227 LAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKA 306 (511)
Q Consensus 227 ~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
..+..++........||.++++++ + .+.++. .+.+.++.+... +.... ........+.+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~----~~~~~~~~~~~~-l~~~~----~~~~~~~~~~~~~~--- 245 (392)
T PRK12382 184 TMVLPLLAWAFNGTVRKVPAHAGE---R---PSLWSV----VGLIWKPGLGLA-LQGVG----FAVIGTFVSLYFAS--- 245 (392)
T ss_pred HHHHHHHHHHHHHhccCCCCCccc---C---chHHHH----HHHHHHhHHHHH-HHHHH----HhHHHHHHHHHHHh---
Confidence 555443333222223332221110 0 111111 111112222111 11110 00111111112222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
.|++. .+.......++.+++.+..+++.||+++|+.+..+..+..+..+. ... .++.+..+....+.
T Consensus 246 -~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~l~ 312 (392)
T PRK12382 246 -KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL---LWL-------APTAWVALAGAALT 312 (392)
T ss_pred -cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH---HHH-------cccHHHHHHHHHHH
Confidence 24443 344455667778889999999999999998887775554442221 111 11222222333445
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
++..+...+.......+..|++++|+++|+.++..++|..++|.+.|.+.+..|+.
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~ 368 (392)
T PRK12382 313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYP 368 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 55555555666677788999999999999999999999999999999999987643
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=231.72 Aligned_cols=340 Identities=19% Similarity=0.236 Sum_probs=235.3
Q ss_pred cccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 037870 71 GFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLG 149 (511)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~ 149 (511)
.+......+.+|.++.+++|.|..+++++.+++.++..+ ++++|+++||+ +||++++.+.++.+++.+.+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~ 83 (352)
T PF07690_consen 9 GFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-----GRRRVLIIGLLLFALGSLLLAFAS 83 (352)
T ss_dssp HHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCeeeEeehhhhhhhHHHHhhhhh
Confidence 333344555677455666999999999999999998877 99999999996 677788899888888856666655
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhh
Q 037870 150 KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAI 229 (511)
Q Consensus 150 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~ 229 (511)
+.+ .+++.+++.|++.+...+...+++.|..++ ++|++..++.+.+.++|.++||.+++.+.+..+||+.|++.++
T Consensus 84 ~~~--~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 84 NFW--LLLIARFLLGIGSGFFSPASNALIADWFPP--EERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI 159 (352)
T ss_dssp CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred hHH--HHhhhccccccccccccccccccccccchh--hhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence 544 478889999999999999999999999844 5799999999999999999999999999999999999999998
Q ss_pred HHHHHHH-HHhhcccccccccchhhhhhhhhHHHHHHH-HHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCC
Q 037870 230 PPVLLIV-LGFVIYETRSANIRSEKKKVMENVEFTTKG-MYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAG 307 (511)
Q Consensus 230 ~~~i~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (511)
+.++..+ ..++++++++++...++++..++.++...+ .+...++|.+|...+..++............+.|..+.
T Consensus 160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 236 (352)
T PF07690_consen 160 LSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEV--- 236 (352)
T ss_dssp HHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH---
T ss_pred hhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhc---
Confidence 8887544 334455444333222111100001111122 44555566665333322222222222222223332222
Q ss_pred CCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFS-QEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s-~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+|++ ..+.+.+.....+..+++.++.+++.||+++++..........+..+....... ..+....+....+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 309 (352)
T PF07690_consen 237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF-------SSSPVWLIIALFLI 309 (352)
T ss_dssp HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH-------HCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHH
Confidence 6788 788888888888999999999999999999877776665554443222221111 01222333344456
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHH
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSK 429 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~ 429 (511)
++..+...+.......+.+|++++|+++|+.+...+++..+||
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 310 GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6677777888888999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-26 Score=225.34 Aligned_cols=392 Identities=12% Similarity=0.078 Sum_probs=248.7
Q ss_pred cccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhccc-ccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 71 GFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAF-PIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~-~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
+....+....+.+|++|..|+++..+|.+..+..+-.++ .|+.|.++||. .++| ||||+++++.+..+++..++...
T Consensus 22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G-r~rp~il~g~i~~~i~~~llf~~ 100 (460)
T PRK11462 22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG-KFRPWVLFGALPFGIVCVLAYST 100 (460)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC-CcchhHhHHHHHHHHHHHHHHhC
Confidence 334445556788888898999999999999999988887 99999999998 5677 99999999988888888777666
Q ss_pred CChh----HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC------
Q 037870 149 GKLP----IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL------ 218 (511)
Q Consensus 149 ~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~------ 218 (511)
|+.+ ...+.+..++..++..+.+++..++..|++++ +++|.++.++...+.++|..+++.+...+.+..
T Consensus 101 p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d-~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~ 179 (460)
T PRK11462 101 PDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND-PTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKP 179 (460)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 5422 23345556667888889999999999999853 577999999999999999888877766654432
Q ss_pred -ChhhHHHHhhhHHHHHH-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccc
Q 037870 219 -GPQGALGVLAIPPVLLI-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEG 296 (511)
Q Consensus 219 -gw~~~f~~~~~~~~i~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
||+....+.+++.++.. ++....+|++.++.+ + .+.+ +.++..++||.++..+...++...........
T Consensus 180 ~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~---~---~~~~---~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~ 250 (460)
T PRK11462 180 LGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT---T---TSMR---EDLRDIWQNDQWRIVGLLTIFNILAVCVRGGA 250 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc---C---CCHH---HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH
Confidence 57777666666655533 344445665322211 1 1122 34566778888766654433333322222233
Q ss_pred eeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCch
Q 037870 297 QFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDS 376 (511)
Q Consensus 297 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (511)
..|+.... .|. +...+.+.....++.+++..+++++.||+++|+.+..+..+..+..+.. .+.. ....
T Consensus 251 ~~y~~~y~---~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~-~~~~-------~~~~ 318 (460)
T PRK11462 251 MMYYVTWI---LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAM-FFVP-------MQAS 318 (460)
T ss_pred hhhhhhhh---cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHhc-------hhHH
Confidence 44555444 332 3344555567778888999999999999999888765543333222211 1111 1111
Q ss_pred hhhhHHHHHHHHHHHhhHhHHHHHHhhcCC-------CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCC-ccc
Q 037870 377 FFVITEQCVSHIISKIRWIPMIVLSTRLCP-------IGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTD-FTN 448 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~-~~~ 448 (511)
...+...++.++..+.......++..+..+ ++.+|..++..+...++|.++|+.++|.+.+..|+..+. -+.
T Consensus 319 ~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~~~~~q~ 398 (460)
T PRK11462 319 ITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAAEKAQN 398 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 111112223333333333333445554444 677888899999999999999999999999998886421 111
Q ss_pred hH------HH-HHHHHHHHHHHHHHHh-hcCCCCcCcCccchhhc
Q 037870 449 LW------LV-ILIRNVLRLATLGLIF-LVPKADQSDELIPVDLL 485 (511)
Q Consensus 449 ~~------~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 485 (511)
-. .+ ..+.+++.+++.+++. +.|-++++.++..+|+.
T Consensus 399 ~~~~~~i~~~~~~~P~~~~~~~~~~~~~~y~l~~~~~~~i~~~l~ 443 (460)
T PRK11462 399 SATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLA 443 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 11 11 1233333445545443 45665555454555543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=224.13 Aligned_cols=345 Identities=10% Similarity=0.031 Sum_probs=216.7
Q ss_pred hcccccccchhhhhhhhhhccc---CCChHHHHHHHHHhhcc---hhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQ---KVQPSVVQIYIGLCYLP---SVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCV 140 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~~s~~~l~---~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~ 140 (511)
+.+.++........|.+.+ ++ +.+..+.+...+++.+. ..+ ++++|+++||+ +||+.+..+.+++.+
T Consensus 32 ~~~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-----Grr~~l~~~~~~~~~ 105 (432)
T PRK10406 32 LVEWFDFYVYSFCSLYFAH-IFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-----GRKKSMLISVCMMCF 105 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHH
Confidence 4455555555555565544 46 45566544444444443 336 78899999996 788899999999999
Q ss_pred HHHHHHhcCChh------HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037870 141 SALMFSLLGKLP------IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFS 214 (511)
Q Consensus 141 ~~~~~~~~~~~~------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l 214 (511)
+.+++++++++. ...+++.|+++|++.+...+...+++.|..+ +++|++..+..+.+...|.++++.++..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p--~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 106 GSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV--EGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC--CCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988753 2347788999999999998989999999884 46689999988888888888888776554
Q ss_pred h--------ccCChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHH
Q 037870 215 V--------NHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLS 286 (511)
Q Consensus 215 ~--------~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 286 (511)
. +.+|||++|++.+++.++.......+||+++.+.+. + + ...++++.+++++.+...+..++.
T Consensus 184 ~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~--~---~----~~~~~~~l~~~~~~~~~~~~~~~~ 254 (432)
T PRK10406 184 QQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA--L---K----EAGSLKGLWRNRRAFIMVLGFTAA 254 (432)
T ss_pred HHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh--h---c----ccccHHHHHhhHHHHHHHHHHHHH
Confidence 3 257999999988777666544444566654322100 0 0 012344566677665544332222
Q ss_pred -hhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhh
Q 037870 287 -LAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFIL 365 (511)
Q Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~ 365 (511)
....+......+.+..+. .|++..+.+.......++..++..+.|++.||+++|+.+.....+..+..+.......
T Consensus 255 ~~~~~~~~~~~lp~~l~~~---~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 255 GSLCFYTFTTYMQKYLVNT---AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 221222222223232222 6888888888777777777888888899999999998876654433222111111111
Q ss_pred hcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHH-HHhHHHHHHHHHHHHh
Q 037870 366 RWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSI-GSLTSKWGGGIVLHLL 439 (511)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~~g~~l~g~l~~~~ 439 (511)
. .......+....+..+..+....+...+.+|.+|++.|++++|+.+...++ .+...|.+.+.+ +..
T Consensus 332 --~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~ 399 (432)
T PRK10406 332 --N----VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSI 399 (432)
T ss_pred --c----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHh
Confidence 0 111111111111122222333334556778999999999999999887765 344577777744 443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=225.69 Aligned_cols=361 Identities=14% Similarity=0.108 Sum_probs=234.7
Q ss_pred cccccccchhhhhhhhhhcccCCChHH-----HHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHH
Q 037870 69 SQGFSGSFSKVVTDYYWKDVQKVQPSV-----VQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSA 142 (511)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~ 142 (511)
..+....+..+.+|.+.++ +|.+..+ .|++.++..++..+ +|++|+++||+ +||+.++.+.++..++.
T Consensus 25 ~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~ 98 (408)
T PRK09874 25 LTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-----GRKIMLLRSALGMGIVM 98 (408)
T ss_pred HHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----CcHHHHHHHHHHHHHHH
Confidence 3444445566678888876 8888654 48888888888777 99999999996 67778888888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhh
Q 037870 143 LMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQG 222 (511)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~ 222 (511)
+++++.++.+ .+++.+++.+++.+.. +....++.+.. ++++|+++.++.+.+..+|..++|.+++.+.+..+||+
T Consensus 99 ~~~~~~~~~~--~~~~~~~~~g~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 173 (408)
T PRK09874 99 VLMGLAQNIW--QFLILRALLGLLGGFV-PNANALIATQV--PRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP 173 (408)
T ss_pred HHHHHHhhHH--HHHHHHHHHHHhhhhH-HhHHHHHHHhc--CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 8877776544 3566677777765543 44556666666 34568999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHH-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHH-HHHhhhccCcccceeee
Q 037870 223 ALGVLAIPPVLLI-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYM-YLSLAVSISTHEGQFYW 300 (511)
Q Consensus 223 ~f~~~~~~~~i~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 300 (511)
.|++.++..++.. ...++++|++++.++.+ + ...++..+.+++++.+...... ++............+.|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T PRK09874 174 VFFITASVLFLCFLVTLFCIRENFQPVSKKE-M-------LHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLY 245 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccchh-h-------hHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888776643 34455666543221110 0 1113345567787765533322 21111111111112222
Q ss_pred eecCCCCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhh
Q 037870 301 YTDPKAGPAFSQ--EFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFF 378 (511)
Q Consensus 301 ~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
..+.. ...+. ...|.+..+..++.+++.+..+++.||+++|+.+..+..+..+..+ .... .++.+.
T Consensus 246 ~~~~~--~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~ 313 (408)
T PRK09874 246 VRELA--GNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLI---PMSF-------VQTPLQ 313 (408)
T ss_pred HHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH---HHHH-------hccHHH
Confidence 22211 11111 1234555566778888888999999999999988877554443211 1111 011222
Q ss_pred hhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHH
Q 037870 379 VITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNV 458 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~ 458 (511)
.+....+.+++.+...+.......+..|++++|+.+|+.+...++|..+||.++|.+.+..|+. ..+.+.++
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~--------~~f~~~~~ 385 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFR--------AVFLVTAG 385 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchh--------HHHHHHHH
Confidence 2233345566666666666777788899999999999999999999999999999999876633 33444444
Q ss_pred HHHHHHHHHh
Q 037870 459 LRLATLGLIF 468 (511)
Q Consensus 459 ~~~~~~~~~~ 468 (511)
+.+++.+..+
T Consensus 386 ~~l~~~~~~~ 395 (408)
T PRK09874 386 VVLFNAVYSW 395 (408)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-26 Score=228.98 Aligned_cols=365 Identities=15% Similarity=0.159 Sum_probs=230.6
Q ss_pred hcccccccchhhhhhhhhhcccCCC--------hHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQ--------PSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAG 138 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~ 138 (511)
+..++.........+....+ ++.+ ..+.+++.+++.++..+ ++++|+++||+ +||++++.+.++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~~~~~~~~~ 111 (481)
T TIGR00879 38 LMFGYDTGVIGGALALPAFE-FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-----GRKKSLLIIALLF 111 (481)
T ss_pred HhcccccchhhhhhhcHHHH-HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-----hhHHHHHHHHHHH
Confidence 45555555555566655443 5555 89999999999999888 99999999996 6888888888888
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHH---HHh
Q 037870 139 CVSALMFSLLGKL-PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVS---GFS 214 (511)
Q Consensus 139 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~---g~l 214 (511)
.++.+++.+.++. ....+++.+++.|++.+...+...+++.|..+ +++|+++.++.+.+.++|..+++.++ +..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 189 (481)
T TIGR00879 112 VIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAP--KALRGALTSLYQLAITFGILVAYGFGSGKVSL 189 (481)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCC--hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888877654432 23356788999999999998888899999884 45699999999999999999999999 766
Q ss_pred hccCChhhHHHHhhhHHHHHHHHHhhccccccccc---chhh-hhhh----------hhHHH------------------
Q 037870 215 VNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANI---RSEK-KKVM----------ENVEF------------------ 262 (511)
Q Consensus 215 ~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~---~~~~-~~~~----------~~~~~------------------ 262 (511)
.+..+||+.|++.++..++..+..+++||+++... +.++ ++.. ....+
T Consensus 190 ~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
T TIGR00879 190 NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP 269 (481)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccc
Confidence 67789999999976666555556667777643110 0000 0000 00000
Q ss_pred HHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 037870 263 TTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPL 342 (511)
Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 342 (511)
...+.++..++ ..+......++.............++......+.|++....+.......++.+++.++.+++.||+++
T Consensus 270 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 348 (481)
T TIGR00879 270 SWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGR 348 (481)
T ss_pred cHHHHHhcCch-hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00111111111 11111111111111111111112222222222357888778888888888899999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhH-HHHHHhhcCCCcchHHHHHHHHHHH
Q 037870 343 RNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIP-MIVLSTRLCPIGIEGTFFALLMCID 421 (511)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~g~~~gl~~~~~ 421 (511)
|+.+..+..+..+..+.....................+....+.....+....+ ...+..|..|++.||+++|+.+...
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 428 (481)
T TIGR00879 349 RPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAAN 428 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHH
Confidence 998887755544432222111110000000000111111112222233333333 3455689999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhcc
Q 037870 422 SIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 422 ~lg~~~g~~l~g~l~~~~g~ 441 (511)
++|..+++.+.|.+.+..++
T Consensus 429 ~lg~~i~~~~~~~~~~~~~~ 448 (481)
T TIGR00879 429 WLANFIVGFLFPTMLESIGV 448 (481)
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999887653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=218.93 Aligned_cols=329 Identities=17% Similarity=0.131 Sum_probs=223.5
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAI 155 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (511)
..+.+|.+.++ +|+|+.+.+++.+++.++..+ ++++|+++||+ +||+++..+.++.+++...+.+.++...
T Consensus 10 ~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 81 (377)
T PRK11102 10 YLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-----GRKPVILGGTLVFALAAVACALAQTIDQ-- 81 (377)
T ss_pred HhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-----CChHHHHHHHHHHHHHHHHHHHHccHHH--
Confidence 34567777666 999999999999999999887 89999999995 6888999999898898888888876543
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHH-
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLL- 234 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~- 234 (511)
+++.+++.+++.+...+...+++.+..+ +++|++..++.+.+..+|..++|.+++.+.+..+||+.|++.++..++.
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 159 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFP--KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAA 159 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 5677888999999888888899998874 4568999999999999999999999999999999999999888777664
Q ss_pred HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhH
Q 037870 235 IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEF 314 (511)
Q Consensus 235 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 314 (511)
.+..+++||++++++++ + .+.++..++.++.+++|..+...+..++............+++..+. .|+++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~ 231 (377)
T PRK11102 160 ALVFFFIPETLPKERRQ--P---FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL---NGVSPQN 231 (377)
T ss_pred HHHHHhCCccCcccccC--C---CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH---hCCCHHH
Confidence 44555677654332111 0 11122234556778888877655544333222222111222222222 5889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhH
Q 037870 315 VGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRW 394 (511)
Q Consensus 315 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
.|.+.....++.+++.++.+++.||+++|+.+..+..+..+.++........ ....+.......+.....+...
T Consensus 232 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T PRK11102 232 FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL------DLGFWALVVGVAAFVGCVSMIS 305 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998887765544332222211110 0011111111112222223333
Q ss_pred hHHHHHHhhcCCCcchHHHHHHHHHHHH-HHHhHHHH
Q 037870 395 IPMIVLSTRLCPIGIEGTFFALLMCIDS-IGSLTSKW 430 (511)
Q Consensus 395 ~~~~~~~~~~~p~~~~g~~~gl~~~~~~-lg~~~g~~ 430 (511)
......+.|..| +.+|+++++.+.... +|..+++.
T Consensus 306 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~ 341 (377)
T PRK11102 306 SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGAL 341 (377)
T ss_pred HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666 789999888766543 33334443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-25 Score=217.70 Aligned_cols=331 Identities=15% Similarity=0.072 Sum_probs=222.6
Q ss_pred cchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhH
Q 037870 75 SFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPI 153 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (511)
....+.+|.+.++ +|.|..+.++..+.+.++..+ +|+.|+++||+ +||++++.+.++..++...+..+++...
T Consensus 20 ~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~l~~~~~~~~i~~~~~~~~~~~~~ 93 (392)
T PRK10473 20 DMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-----GRKPVAIPGAALFIIASLLCSLAETSSL 93 (392)
T ss_pred HHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-----CChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 3444567777665 999999999999999999887 89999999996 6888888888888888888888776543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
+++.+++.+++.+...+...+++.|..+ +++|++..++.+...++|..++|.+++.+.+..|||+.|++.++..++
T Consensus 94 --~~~~~~l~g~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i 169 (392)
T PRK10473 94 --FLAGRFLQGIGAGCCYVVAFAILRDTLD--DRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIL 169 (392)
T ss_pred --HHHHHHHHHhhhhHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHH
Confidence 5667888899888888888888888874 456899999999999999999999999988889999999998877766
Q ss_pred H-HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCCh
Q 037870 234 L-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQ 312 (511)
Q Consensus 234 ~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 312 (511)
. .+..+++||++++++++ +. +..++.++.++++.++...+...+.......+....+++..+. .|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~ 238 (392)
T PRK10473 170 VLLLSLFILKETRPARAPA--AS------SKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQ---MGFSR 238 (392)
T ss_pred HHHHHHHHcCCCCCcccCC--cc------chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH---cCCCH
Confidence 4 34455667765432111 10 0112344566777766544433222211111111122222222 68899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHh
Q 037870 313 EFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKI 392 (511)
Q Consensus 313 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
.+.+.+.....++.+++.++.+++.||+++|+.+..+..+..+..+....... ....+....+...+.+.
T Consensus 239 ~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~g~~~ 308 (392)
T PRK10473 239 GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS----------HAVSLFGITLICAGFSV 308 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 99998888888999999999999999999999888776555443222211110 01111111111111122
Q ss_pred hHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 393 RWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 393 ~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
.. ......+..|.++++ |...+...++..+|+.+++++.+.+|+
T Consensus 309 ~~--~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~ 352 (392)
T PRK10473 309 GF--GVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGI 352 (392)
T ss_pred Hh--HHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 122334555654443 444555678888899999999988774
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=219.01 Aligned_cols=333 Identities=10% Similarity=0.011 Sum_probs=224.7
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..+.......+.+|.+.++ +|.|..++|++.+.+.++..+ +|++|+++||+ +||+.+..+.++..++...++
T Consensus 16 ~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-----g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 16 LLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-----GFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred HHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777888988876 899999999999999999887 99999999996 678888888888888888888
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
++++.. .+++.+++.|++.+...+...+.+.+..+ +++|++.++.++.+.++|..+|+.+++.+.+...|.. .+.
T Consensus 90 ~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~~ 164 (381)
T PRK03633 90 LMVGFW--SWLAWRFVAGIGCAMIWVVVESALMCSGT--SRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL-PWV 164 (381)
T ss_pred HhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH-HHH
Confidence 887644 35677899999988877776666666653 3468999999999999999999999999877543333 233
Q ss_pred hhhHHHHHH-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCC
Q 037870 227 LAIPPVLLI-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPK 305 (511)
Q Consensus 227 ~~~~~~i~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (511)
.+....... +.....++++. +++ ++ ++.++.+++|..+......++............+.+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-- 229 (381)
T PRK03633 165 TGLVLAAILPLLFTRILNQQA--ENH--DS---------TSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-- 229 (381)
T ss_pred HHHHHHHHHHHHHhcccCCCC--CCC--CC---------CCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 222222211 22212222211 100 00 123345677776654322222111111111122333322
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
.|.++...|.+.....++.+++....+++.||+++|+.+..+..+..+..+.. .. . .... ....+
T Consensus 230 --~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~---~~-------~--~~~~-~~~~l 294 (381)
T PRK03633 230 --QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM---LS-------Q--AAMA-PALFI 294 (381)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH---hh-------h--HHHH-HHHHH
Confidence 57888899988888889999999999999999999998877655544322211 11 0 0111 11122
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
.+.......+.......|..|+++++...+..+...++|..+||.++|++.|..|.
T Consensus 295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~ 350 (381)
T PRK03633 295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD 350 (381)
T ss_pred HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33333444555667778889988888888888888999999999999999998763
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=219.64 Aligned_cols=335 Identities=15% Similarity=0.099 Sum_probs=228.2
Q ss_pred ccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 037870 72 FSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGK 150 (511)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~ 150 (511)
.......+.+|.+.++ +|.|+.+.+++.+++.+++.+ ++++|+++||+ +||+.++.+.++..++.+.+.+.++
T Consensus 22 ~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~ 95 (394)
T PRK11652 22 MAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-----GRRPVILVGMSIFILGTLVALFAHS 95 (394)
T ss_pred HHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHHHHHHHHHHHHHHHcc
Confidence 3334445566776655 999999999999999999888 89999999996 6788888888888888888888776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhH
Q 037870 151 LPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIP 230 (511)
Q Consensus 151 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~ 230 (511)
.. .+++.+++.+++.+...+....+..|..+ +++++++.++.+.+..+|..+||.+++.+.+..|||+.|++.++.
T Consensus 96 ~~--~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~ 171 (394)
T PRK11652 96 LT--VLIAASAIQGLGTGVGGVMARTLPRDLYE--GTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLL 171 (394)
T ss_pred HH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 44 35677888888888777777777777653 345788888888999999999999999999989999999998777
Q ss_pred HHHH-HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCC
Q 037870 231 PVLL-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPA 309 (511)
Q Consensus 231 ~~i~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 309 (511)
.++. .+..++.||++++++++ + +..++.++.+++|.++...+..+........+....+.+..+. .|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g 239 (394)
T PRK11652 172 GAGVTFSMARWMPETRPADARR--T-------RVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV---LG 239 (394)
T ss_pred HHHHHHHHHHhCCccCccccch--h-------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH---cC
Confidence 6653 34455677754332111 1 1224456677888776655433332221111111122233332 68
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHH
Q 037870 310 FSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHII 389 (511)
Q Consensus 310 ~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+++.+.|++.....++.+++..+.+++.||.+++... ......+..+....... ......+.......+.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g 312 (394)
T PRK11652 240 LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGW-----FGVMNVWTLLVPAALFFFG 312 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----hccccHHHHHHHHHHHHHH
Confidence 8999999988888899999999999999988732222 21112211111111100 0111222233334455566
Q ss_pred HHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 037870 390 SKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVL 436 (511)
Q Consensus 390 ~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~ 436 (511)
.+...+.......+..| +++|+..++.+...++|..+++.++|.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66667777777778887 67899999999999999999998888664
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=223.20 Aligned_cols=349 Identities=9% Similarity=-0.015 Sum_probs=229.9
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHH
Q 037870 59 IFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVA 137 (511)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~ 137 (511)
.+...+.+ +..+.........+|.+.++ +|+|.++.+++.+...+++.+ +++.|+++||+ +||+.++.+.++
T Consensus 9 ~~~~~~~~-~~~~~~~~~~g~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----g~r~~~~~~~~~ 81 (394)
T PRK03699 9 TWISFLSY-ALTGALVIVTGMVMGPIAEY-FNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-----PLKRQLIFGFAL 81 (394)
T ss_pred HHHHHHHH-HHHHHHHHHHhhhhHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHH
Confidence 34444444 44444444556667776554 999999999999999999888 89999999996 678888888888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc-
Q 037870 138 GCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN- 216 (511)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~- 216 (511)
..++.++++++++.. .+++.+++.+++.+...+...+++.+..+ +++|++..+..+....+|..++|.+.+.+.+
T Consensus 82 ~~i~~~l~~~~~~~~--~~~~~~~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (394)
T PRK03699 82 MILAVAGLMFSHSLA--LFSIAMFVLGVVSGITMSIGTFLITHVYE--GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR 157 (394)
T ss_pred HHHHHHHHHHcchHH--HHHHHHHHHHHhhHhhccchhHHhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888887644 35677888898888777777778888773 3568888888888888999999999988765
Q ss_pred cCChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccc
Q 037870 217 HLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEG 296 (511)
Q Consensus 217 ~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
..|||+.|++.+++.++..+..++.+.++.++++. ++. + + ..++ ..++.++...+..++...........
T Consensus 158 ~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~-~---~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (394)
T PRK03699 158 SIEWYWVYACIGLVYVAIFILTLFSEFPALGKHAP--KAD-K---P---VAKE-KWGIGVLFLAIAALLYILAQLTFISW 227 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccccccCc--ccc-C---c---cccc-cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999988877666443333222111111100 000 0 0 0011 12344444433333322222222222
Q ss_pred eeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCch
Q 037870 297 QFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDS 376 (511)
Q Consensus 297 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (511)
.+.|..+. .|+|+.+.+.+.....++..++.++.+++.||+++|+.+.....+..+. ...+.. .++.
T Consensus 228 ~p~~l~~~---~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~---~~~~~~-------~~~~ 294 (394)
T PRK03699 228 VPEYAQKK---FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL---MYLFVN-------TDDP 294 (394)
T ss_pred HHHHHHHH---cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH---HHHHHH-------cCCc
Confidence 33333332 6899999999888888899999999999999999998877664443331 111111 1111
Q ss_pred hhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 377 FFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
.......++.++..+..++...+...+..| +.+++..|......++|..++|.+.|++.+..|+.
T Consensus 295 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~ 359 (394)
T PRK03699 295 SHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ 359 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch
Confidence 122222234444444444444555566666 44567788888999999999999999999987744
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=232.95 Aligned_cols=367 Identities=12% Similarity=0.050 Sum_probs=234.2
Q ss_pred ccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 037870 88 VQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAG 166 (511)
Q Consensus 88 ~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 166 (511)
+++++..+.|++.+.+.+++.+ +++.|+++||+ +||+.+..+.++..++.+++.+........+++.++++|++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-----VFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-----CcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHh
Confidence 5899999999999999999988 89999999996 67778888888777777766543222233467789999999
Q ss_pred HHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhhHHHHhhhHHHHHHHHHhh-cccc
Q 037870 167 IAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL-GPQGALGVLAIPPVLLIVLGFV-IYET 244 (511)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~-gw~~~f~~~~~~~~i~~~~~~~-~~e~ 244 (511)
.+...+....++.++. ++++|+++.++...+..+|.++++++++.+.+.+ |||++|++.+++.++..+.++. .+|+
T Consensus 145 ~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 145 QGSVSPATHKIIVKWA--PPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred cccchhhHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 9999998889999987 4466999999999999999999999999999884 9999999998888775554443 4444
Q ss_pred cccccchh--hhhhhh-hHH------HHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHH
Q 037870 245 RSANIRSE--KKKVME-NVE------FTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFV 315 (511)
Q Consensus 245 ~~~~~~~~--~~~~~~-~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 315 (511)
++..+... +++..+ ... +....+++.++++.+|...+..++............+.+..+. +|++..+.
T Consensus 223 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~---~g~s~~~~ 299 (465)
T TIGR00894 223 PSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV---LRVSGKEN 299 (465)
T ss_pred cccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcChHHh
Confidence 43221110 010000 000 0001356677888887776655554443332222333333333 68999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHH-----H--HHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHH
Q 037870 316 GLIYALGAVASMIGVLIYHKTLKDYPLRNL-----L--FSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 388 (511)
Q Consensus 316 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~-----l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
|++..+..++.+++..+.|++.||.++|+. . ................... . .......+....+.+.
T Consensus 300 g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~l~~~ 373 (465)
T TIGR00894 300 GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY--L----SAAFYLTIIILTLANA 373 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--c----CCchHHHHHHHHHHHH
Confidence 998888888899999999999887543211 1 1111111100011111110 0 0111122222222233
Q ss_pred HHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHh
Q 037870 389 ISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIF 468 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (511)
..+...........+..|+ ..|+++|+.+...+++..++|.+.|.+.+.. ....+...+.+.+++.+++.++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~-----~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 374 VSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQD-----SKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCC-----CchHHHHHHHHHHHHHHHHHHHee
Confidence 3333333333444566764 8999999999999999999998888776531 112344556666666666666555
Q ss_pred hcCCCCcC
Q 037870 469 LVPKADQS 476 (511)
Q Consensus 469 ~~~~~~~~ 476 (511)
..++.+.+
T Consensus 448 ~~~~~~~~ 455 (465)
T TIGR00894 448 IFGSAERQ 455 (465)
T ss_pred eeecceec
Confidence 55544433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=215.21 Aligned_cols=330 Identities=15% Similarity=0.133 Sum_probs=224.3
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
.+.+|.+. +++|.++++.|++.+++.++..+ ++++|+++||+ +||+.+..+.++..++.+++++.++... +
T Consensus 26 ~p~~~~i~-~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~--l 97 (401)
T PRK11043 26 LPAFKAIQ-ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-----GRKPVLLAGLSLFALGSLGMLWVESAAQ--L 97 (401)
T ss_pred HhhHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-----CCcHHHHHHHHHHHHHHHHHHHhcCHHH--H
Confidence 34445444 45999999999999999999887 89999999996 6788888888888888888888876543 5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV 236 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~ 236 (511)
++.+++.+++.+...+...+++.|..++ +++++..+..+....+|..++|.+++++.+++|||+.|++.++..++..+
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~ 175 (401)
T PRK11043 98 LVLRFVQAVGVCSAAVIWQALVIDRYPA--QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLIL 175 (401)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 6678888888877777777888887643 44677788888888999999999999999999999999998877777555
Q ss_pred HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHH
Q 037870 237 LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVG 316 (511)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 316 (511)
..++++|++++++++ +...+.++.+|+|..+...+...+............+++..+ .|+++.+.|
T Consensus 176 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~g~s~~~~g 241 (401)
T PRK11043 176 PTLRLKPSKKARKQS----------QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ----MGYSPADIG 241 (401)
T ss_pred HHHHcCCCCCccccc----------hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH----cCCCHHHHH
Confidence 555555544322111 011345667778876654433322222111111122222222 588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhH
Q 037870 317 LIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIP 396 (511)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (511)
+......++.++|.+..+++.||+++|+.+........+..+....... ...+..+..+....+.++..+..++.
T Consensus 242 ~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (401)
T PRK11043 242 LSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASL-----LSHPSLVPLLIPFCVMAAANGAIYPI 316 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-----hccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8877778888999999999999999888765544333332221111111 01112222222223344444555555
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 397 MIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 397 ~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
......+..| +++|++.|+.++....+...++.+.|.+.+
T Consensus 317 ~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 317 VVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5555556666 679999999999988888899888888765
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-25 Score=219.57 Aligned_cols=388 Identities=12% Similarity=0.117 Sum_probs=235.2
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhccc-ccCCCCCchHHHHHHHHHHHHHHHHHhcC-C--
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAF-PIKGYHRRPYFVIAGVAGCVSALMFSLLG-K-- 150 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~-~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~-~-- 150 (511)
...+.++.|+++.+|+++.++|.+.++..+..++ +|++|.++||. +++| ||||+++.+.+...+...++...+ .
T Consensus 26 ~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~G-r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (448)
T PRK09848 26 MGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWG-KFRPFLLFGTAPLMIFSVLVFWVPTDWS 104 (448)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCc-CchHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 3344566788888999999999999999988877 99999999998 4456 888888877766655544432222 1
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHH-----HHHHHHHHHHHHHhhccC--Chh
Q 037870 151 --LPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCS-----AAGSLIGYAVSGFSVNHL--GPQ 221 (511)
Q Consensus 151 --~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-----~~G~~lg~~~~g~l~~~~--gw~ 221 (511)
.....++...++.+++.++..++..++..++.++ +++|.+..++...+. .++..++|.+++...... +|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~ 183 (448)
T PRK09848 105 HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ-PQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYH 183 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 1222234445566777888887778887777643 345777666554433 345555666554332111 222
Q ss_pred hHHHHhhhHHHHH-HHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeee
Q 037870 222 GALGVLAIPPVLL-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYW 300 (511)
Q Consensus 222 ~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
....+.+++.++. .+.....||+..++.++ .+. .+.++.++|||.++...+..++............++|
T Consensus 184 ~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~------~~~---~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~ 254 (448)
T PRK09848 184 FWTIVLAIAGMVLYFICFKSTRENVVRIVAQ------PSL---KISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFY 254 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCcEeccCCCccC------CCH---HHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheee
Confidence 1222223333332 22334456653322111 111 2345678899998877665555444333333345566
Q ss_pred eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhh
Q 037870 301 YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 380 (511)
Q Consensus 301 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (511)
..+. .|.+....++......++.+++.++.+++.||+++|+.+..+..+..++.+... +.. ....+..+
T Consensus 255 ~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~-~~~-------~~~~~~~~ 323 (448)
T PRK09848 255 VRYV---LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF-WVS-------VWSLPVAL 323 (448)
T ss_pred Eeee---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HcC-------chhHHHHH
Confidence 6554 566665555544555677888999999999999999999888666554332221 111 11222222
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhcCCC-------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccc-----
Q 037870 381 TEQCVSHIISKIRWIPMIVLSTRLCPI-------GIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTN----- 448 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~----- 448 (511)
....+.++..+....+..++..+..|. +.+|..+|+.+...++|..+|+.+.|.+.+..|+....-+.
T Consensus 324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~~~~~~ 403 (448)
T PRK09848 324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIM 403 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHH
Confidence 233345555566666667777777654 45799999999999999999999999999998885432111
Q ss_pred -hHHH-HHHHHHHHHHHHHHHhhcCCCCcCcCccchhhc
Q 037870 449 -LWLV-ILIRNVLRLATLGLIFLVPKADQSDELIPVDLL 485 (511)
Q Consensus 449 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (511)
.... ..+.+++.+++++++++.|.+|++.++..+|+.
T Consensus 404 ~i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~~~~~l~ 442 (448)
T PRK09848 404 GIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEID 442 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeCCHHHHHHHHHHHH
Confidence 1122 233444455556656667766555444545443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=226.23 Aligned_cols=347 Identities=12% Similarity=0.040 Sum_probs=232.0
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
......|.+. +++|.+..+.|++.++..++..+ .++.|+++||+ +||+.++.+.++..++.++++++++..
T Consensus 13 ~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~-- 84 (379)
T TIGR00881 13 NFALAMPYLV-EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-----NPRVFLPIGLILCAIVNLFFGFSTSLW-- 84 (379)
T ss_pred hhhhhhHHHH-HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-----CCeehhHHHHHHHHHHHHHHHHhhhHH--
Confidence 3344566554 45999999999999999999887 89999999996 688888899988889988888887544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHH-HHHHHhhccCChhhHHHHhhhHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGY-AVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~-~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
.+++.+++.+++.+...+...+++.|..++ ++|++..++.+.+.++|..+++ .+++.+.+..+||+.|++.+++.++
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 85 VMAALWALNGIFQGMGWPPCGRTVTKWFSR--SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHhhccccCCchHHHHHHhcCH--hhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 366778888998888888888899988743 5689999999999999999999 5777777888999999988877766
Q ss_pred H-HHHHhhcccccccccchh------hh------hhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeee
Q 037870 234 L-IVLGFVIYETRSANIRSE------KK------KVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYW 300 (511)
Q Consensus 234 ~-~~~~~~~~e~~~~~~~~~------~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
. .+.+++.+|+++++...+ ++ +..++........++.+++|.++...+..++............+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (379)
T TIGR00881 163 VSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLY 242 (379)
T ss_pred HHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 444555665443211000 00 0000001111234566788887766655444433222222222333
Q ss_pred eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChHHHHHH-HHHHHHhhhhhHHHhhhcccccCCCchhh
Q 037870 301 YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYP-LRNLLFSA-QLLYGISGMLDLIFILRWNLALGIPDSFF 378 (511)
Q Consensus 301 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
..+. .|++..+.+.+.....++.+++.++.+++.||.. +|+..... ....... ....... . ...+...
T Consensus 243 ~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~--~---~~~~~~~ 312 (379)
T TIGR00881 243 LTQE---KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV--SLLVYWL--N---PAANPLM 312 (379)
T ss_pred HHHH---hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH--HHHHHhc--C---cchhHHH
Confidence 3332 6889999999888888999999999999999753 33322221 1111111 1111100 0 0111112
Q ss_pred hhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 379 VITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
.+......+...............|.+|++.||+++|+.+...++|..++|.+.|.+.+..|++
T Consensus 313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 376 (379)
T TIGR00881 313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA 376 (379)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence 1122222232222223334456789999999999999999999999999999999999988764
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-25 Score=214.22 Aligned_cols=333 Identities=11% Similarity=0.046 Sum_probs=221.5
Q ss_pred ccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCC---chHHHHHHHHHHHHHHHHHhcC
Q 037870 74 GSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHR---RPYFVIAGVAGCVSALMFSLLG 149 (511)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~R---r~~l~~~~~~~~~~~~~~~~~~ 149 (511)
.++..+.+|.++++ +|.|..++|++.+++.++..+ +|++|+++||++ || ++.+.+.... .........+
T Consensus 20 ~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g----~~~~~~~~~~~~~~~--~~~~~~~~~~ 92 (382)
T PRK11128 20 YGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPS----QLIPALRLLALLTLL--FAVAFWFGAH 92 (382)
T ss_pred HHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc----chHHHHHHHHHHHHH--HHHHHHHhcc
Confidence 34556678888877 899999999999999999877 999999999963 22 1222222111 1122222334
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhh
Q 037870 150 KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAI 229 (511)
Q Consensus 150 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~ 229 (511)
+.+ .+++.+++.+++.+...+..+++..+.. ++|++..+......++|..+||+++|++.+++|||..|++.++
T Consensus 93 ~~~--~l~i~~~l~g~~~~~~~~~~~a~~~~~~----~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~ 166 (382)
T PRK11128 93 SFW--LLFVAIGLFNLFFSPLVPLTDALANTWQ----KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA 166 (382)
T ss_pred cHH--HHHHHHHHHHHHHcccccHHHHHHHHHH----hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 433 3456677778777777777777766652 2367777778888899999999999999999999999998776
Q ss_pred HHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCC
Q 037870 230 PPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPA 309 (511)
Q Consensus 230 ~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 309 (511)
..++..+..++.||++++.+++ ++. + +..++.++.+|+|.++...+..++............+.+..+ .|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~---~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~g 236 (382)
T PRK11128 167 GVASMLLGQLLRPTIMPQGESR--QQE-S---AGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA----AG 236 (382)
T ss_pred HHHHHHHHHHccCCCCCccccc--ccc-c---cccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH----CC
Confidence 5544443344455543221111 100 0 112345678899998877665555443322222222222222 68
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHH
Q 037870 310 FSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHII 389 (511)
Q Consensus 310 ~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (511)
+++.+.|.+.....++.++..++.+++.||+++|+.+..+.++..+..+. ... .++.+..+...++.++.
T Consensus 237 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 237 YSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL---MGS-------TTALPWLIVIQILHCGT 306 (382)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HHh-------hhhHHHHHHHHHHHHHH
Confidence 89999999888888899999999999999999999988776555442211 111 12233334445566666
Q ss_pred HHhhHhHHHHHHhhcCCCcchHHHHHHHH-HHHHHHHhHHHHHHHHHHHHhc
Q 037870 390 SKIRWIPMIVLSTRLCPIGIEGTFFALLM-CIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 390 ~~~~~~~~~~~~~~~~p~~~~g~~~gl~~-~~~~lg~~~g~~l~g~l~~~~g 440 (511)
.+...+....+..+. +++++++.+++++ ....+|..+||.++|.+.|.+|
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 676666666777776 5566789999887 4456777999999999999875
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=220.30 Aligned_cols=349 Identities=9% Similarity=-0.028 Sum_probs=215.7
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHH-HHhhc--ch---hh-hhHHHhhhcccccCCCCCchHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYI-GLCYL--PS---VM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCV 140 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-s~~~l--~~---~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~ 140 (511)
+.+.++........|.+.++ ++.+..+.+... +.... .+ .+ +++.|+++||+ +||+.++.+.++..+
T Consensus 25 ~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Grr~~l~~~~~~~~~ 98 (434)
T PRK15075 25 FLEMFDFFLFGFYATAIAKT-FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-----GRRKGLIVTLSIMAS 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-----chHHHHHHHHHHHHH
Confidence 56666666677777876555 898877765433 22222 22 23 67889999996 688888999999999
Q ss_pred HHHHHHhcCChhH------HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037870 141 SALMFSLLGKLPI------AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFS 214 (511)
Q Consensus 141 ~~~~~~~~~~~~~------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l 214 (511)
+.++++++++... ..+++.|+++|++.+...+....++.|+. ++++|++.+++...+.++|..+|+.+++.+
T Consensus 99 ~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~--p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 99 GTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA--TPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC--CcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987652 13577899999999888777788899988 446799999999888888888888888776
Q ss_pred h--------ccCChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHH-HHH
Q 037870 215 V--------NHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLY-MYL 285 (511)
Q Consensus 215 ~--------~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 285 (511)
. +.+|||++|++..+...+........||++...+ ++.+.+.++ ..+...++++.+..... .++
T Consensus 177 ~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 249 (434)
T PRK15075 177 NQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLA----RKHRPSMRE---IFRSLAANWRIVLAGMLMVAM 249 (434)
T ss_pred HHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHH----hhhcccccc---HHHHHHHhHHHHHHHHHHHHH
Confidence 2 4689999998754432222222222333221000 000000011 11122233333322111 111
Q ss_pred HhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhh
Q 037870 286 SLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFIL 365 (511)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~ 365 (511)
............+.+..+. .|++..+.+++.....++.+++.++.|++.||+++|+.+..+..+..+..+.......
T Consensus 250 ~~~~~~~~~~~~p~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 326 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTV---LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV 326 (434)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111223333222 5888888888888888899999999999999999999877654433221111111111
Q ss_pred hcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHH-HHhHHHHHHHHHHHHhc
Q 037870 366 RWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSI-GSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~~g~~l~g~l~~~~g 440 (511)
..+..........+.++..+...........|..|++.||+.+|+.....+. ++.++|.+.|++.+..|
T Consensus 327 ------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 327 ------AAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred ------cCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 0111111111112223334444444556778999999999999997665554 58889999999999876
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=221.37 Aligned_cols=344 Identities=13% Similarity=0.103 Sum_probs=230.3
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..+..........|.+.++ +|.+..+.+++.+...++..+ .++.|+++||+ +||+.+..+.++..++.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~~~~~~~~ 100 (398)
T TIGR00895 27 LMDGYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-----GRKRVLLWSILLFSVFTLLCA 100 (398)
T ss_pred HHHHHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-----hhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444556666555 999999999999999998877 89999999996 688888888888888888888
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
+.++... +++.+++.+++.+...+...+++.|..+ +++|++..++...+..+|..+++.+++++.+..||+..|++
T Consensus 101 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 101 LATNVTQ--LLILRFLAGLGLGGLMPNLNALVSEYAP--KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred HccchHH--HHHHHHHHhcccccchhhHHHHHHHHcC--HHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 8776443 5667888899988888888999999874 35689999999999999999999999999999999999998
Q ss_pred hhhHHHH-HHHHHhhcccccccccchhhhhh---------------------hhhHHHHHHHHHH-hccCCcc---hHHH
Q 037870 227 LAIPPVL-LIVLGFVIYETRSANIRSEKKKV---------------------MENVEFTTKGMYK-SMKCPQV---WKPS 280 (511)
Q Consensus 227 ~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~-~l~~~~~---~~~~ 280 (511)
.++..++ ..+...++||++....++++++. .+...+..++.++ .++++.. +...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLW 256 (398)
T ss_pred hhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHH
Confidence 8765555 44455667765432110000000 0000001112222 2222211 1111
Q ss_pred HHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhh
Q 037870 281 LYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLD 360 (511)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~ 360 (511)
+..++............+++.. +.|+++.+.+.+.....++.+++.++.+++.||+++|+...... +..+....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~- 330 (398)
T TIGR00895 257 LLYFMLLVGVYFLTNWLPKLMV----ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVL- 330 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHH-
Confidence 1111111111111111222222 26888889998888889999999999999999999884443332 22221111
Q ss_pred HHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037870 361 LIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIV 435 (511)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l 435 (511)
.... ..+....+...++.+++.+...+.....+.|.+|+++||+++|+.+...++|..+||.++|++
T Consensus 331 -~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 331 -VGST-------LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred -HHHH-------hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 1110 111222233334556666777777788899999999999999999999999999999999875
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=223.20 Aligned_cols=399 Identities=11% Similarity=0.052 Sum_probs=241.1
Q ss_pred HHHHHHHhhcccccccchhhhhhhhhhcc----cCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHH
Q 037870 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDV----QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIA 134 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~ 134 (511)
..+.+.. +.+++.........|.+-.+. .+.+..+.+++.+...++..+ ++++|+++||+ +||+.+.++
T Consensus 19 ~~~~~~~-~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-----Grr~~~~~~ 92 (502)
T TIGR00887 19 VIAGVGF-FTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-----GRKRVYGME 92 (502)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHH
Confidence 3333444 667776666666666543321 245667788999999999888 89999999996 788888888
Q ss_pred HHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHH
Q 037870 135 GVAGCVSALMFSLLGKL----PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAV 210 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~ 210 (511)
.++..++.++++++++. ....+++.|++.|++.+...+....++.|.. ++++|++..++.+....+|.++++.+
T Consensus 93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~--p~~~Rg~~~~~~~~~~~~g~~~g~~~ 170 (502)
T TIGR00887 93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFA--TKKWRGAMMAAVFAMQGFGILAGAIV 170 (502)
T ss_pred HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888876641 1345788899999999999999999999998 44679999999999999999999988
Q ss_pred HHHhhc-----------------------cCChhhHHHHhhhHHHHHHHHHhhccccccccc---chhh--hh-------
Q 037870 211 SGFSVN-----------------------HLGPQGALGVLAIPPVLLIVLGFVIYETRSANI---RSEK--KK------- 255 (511)
Q Consensus 211 ~g~l~~-----------------------~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~---~~~~--~~------- 255 (511)
+..+.. .++||++|.+.+++.++..+..+++||+++... +.++ ++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 876532 247999998887777776667788999876421 1100 00
Q ss_pred -----hhhh---H----HHHHHHHHHhccC---CcchHHHHH----HHHHhhhccCcccceeeeeecCCCCCCCChhHH-
Q 037870 256 -----VMEN---V----EFTTKGMYKSMKC---PQVWKPSLY----MYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFV- 315 (511)
Q Consensus 256 -----~~~~---~----~~~~~~~~~~l~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~- 315 (511)
..++ . ++...++++++++ ++.++..+. .+......+......+.+... .|++....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~----~G~~~~~~~ 326 (502)
T TIGR00887 251 VKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA----IGYSPPAAT 326 (502)
T ss_pred cccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH----HcCCCCccc
Confidence 0000 0 0000123444432 222222111 111111112221112222221 34433211
Q ss_pred ----------HH-HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHH
Q 037870 316 ----------GL-IYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQC 384 (511)
Q Consensus 316 ----------g~-~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
.. ......++.+++.++.+++.||+|||+.+..+..+..+............ . ......+ ..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~----~-~~~~~~~--~~ 399 (502)
T TIGR00887 327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL----S-THGFLAI--YV 399 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc----c-hhHHHHH--HH
Confidence 11 12344556777888999999999999988777655544322222111100 0 0111111 11
Q ss_pred HHHHHHHhh-HhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCc--cchHHHHHHHHHHHH
Q 037870 385 VSHIISKIR-WIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDF--TNLWLVILIRNVLRL 461 (511)
Q Consensus 385 ~~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~--~~~~~~~~~~~~~~~ 461 (511)
+..+..+.. ......+..|..|++.|+++.|+.+.+.++++.+++.+.+.+.+..+..++.. ......+.+.+++.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 479 (502)
T TIGR00887 400 LAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMF 479 (502)
T ss_pred HHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHH
Confidence 111122222 22334556899999999999999999999999999999999887432110000 011223444444444
Q ss_pred HHHHHHhhcCCCCcCc
Q 037870 462 ATLGLIFLVPKADQSD 477 (511)
Q Consensus 462 ~~~~~~~~~~~~~~~~ 477 (511)
++.++.+++||+++++
T Consensus 480 ~~~i~~~~lpEt~~~~ 495 (502)
T TIGR00887 480 LGILFTLLIPETKGKS 495 (502)
T ss_pred HHHHHheEeccCCCCC
Confidence 4545556778877643
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-25 Score=219.04 Aligned_cols=368 Identities=12% Similarity=0.053 Sum_probs=224.9
Q ss_pred chhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHH
Q 037870 56 STFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIA 134 (511)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~ 134 (511)
|..++...+.+ ............+.|. +++ +|+++++.+++.+++.++..+ +++.|+++||+ +||+.++.+
T Consensus 26 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~~~~~~~~ 97 (438)
T TIGR00712 26 WQVFLGIFFGY-AAYYLVRKNFALAMPY-LVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-----NPRVFLPAG 97 (438)
T ss_pred HHHHHHHHHHH-HHHHHHhccHHhhhHH-HHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-----CCceehHHH
Confidence 44445555555 2233222223344554 455 699999999999999999887 89999999996 567778888
Q ss_pred HHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHH
Q 037870 135 GVAGCVSALMFSLLGKL--PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSG 212 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g 212 (511)
.++.+++.+++++.++. +...+.+.+++.+++.+...+.....+.|.. ++++|++++++.+.+.++|..+++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~--~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWW--SQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhc--CcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 88888887777665321 2333456677788887777666677777776 4466999999999999999999988877
Q ss_pred Hhhc-cCChhhHHHHhhhHHHHH-HHHHhhccccccccc--chh--hh----h--hhhhHHHHHHH--HHHhccCCcchH
Q 037870 213 FSVN-HLGPQGALGVLAIPPVLL-IVLGFVIYETRSANI--RSE--KK----K--VMENVEFTTKG--MYKSMKCPQVWK 278 (511)
Q Consensus 213 ~l~~-~~gw~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~--~~~--~~----~--~~~~~~~~~~~--~~~~l~~~~~~~ 278 (511)
...+ ..+||+.|++.++..++. .+.++++||++++.. +.+ +. + ...+.+...++ ....+|++.+|.
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWY 255 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHH
Confidence 6544 569999999988887774 445566676543210 000 00 0 00000000111 124678888887
Q ss_pred HHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhh
Q 037870 279 PSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGM 358 (511)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~ 358 (511)
..+..++.....+......+.+..+. .|+++.+.++......++.+++.++.+++.||+++++....+.........
T Consensus 256 ~~~~~~~~~~~~~~~~~~~p~~l~~~---~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 332 (438)
T TIGR00712 256 IAIANVFVYLLRYGVLDWSPTYLKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTI 332 (438)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHc---cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 76554444332222222233333332 588998999888888889999999999999998543322222211111111
Q ss_pred hhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Q 037870 359 LDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGS-LTSKWGGGIVLH 437 (511)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~-~~g~~l~g~l~~ 437 (511)
....+.. . .....+......+..++..............|.+|++.+|+++|+.+...++++ .++|.+.|.+.|
T Consensus 333 ~~~~~~~--~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~ 407 (438)
T TIGR00712 333 AVIVYWM--N---PAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 407 (438)
T ss_pred HHHHHHh--c---CCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH
Confidence 1111110 0 001111111111111111111111112345689999999999999999988875 689999999999
Q ss_pred Hhcc
Q 037870 438 LLHV 441 (511)
Q Consensus 438 ~~g~ 441 (511)
..|+
T Consensus 408 ~~g~ 411 (438)
T TIGR00712 408 FFGW 411 (438)
T ss_pred hccc
Confidence 7763
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=219.70 Aligned_cols=358 Identities=13% Similarity=0.121 Sum_probs=237.7
Q ss_pred hhhhhhcccCCC---hHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 81 TDYYWKDVQKVQ---PSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 81 ~~~~~~~~~g~s---~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
.+.+ ++++|++ ..+.++..+++.++..+ .+++|+++||+ +||++++++.++..++.++.++++++.. +
T Consensus 112 ~~~i-~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-----Grr~~~~~~~~~~~i~~~~~~~~~~~~~--~ 183 (505)
T TIGR00898 112 SSTI-VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-----GRKKVLLLSTLVTAVSGVLTAFSPNYTV--F 183 (505)
T ss_pred cccE-EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-----cchHHHHHHHHHHHHHHHHHHHcccHHH--H
Confidence 3443 4569999 99999999999999988 89999999995 6888888899999999988888886543 6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV 236 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~ 236 (511)
++.+++.|++.+...+....++.|..+ +++|++..++...+..+|.++++.+++.+.+ ||+.|++.+++.++..+
T Consensus 184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~ 258 (505)
T TIGR00898 184 LVFRLLVGMGIGGIWVQAVVLNTEFLP--KKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFL 258 (505)
T ss_pred HHHHHHHHhhccchHHHHHHHhheecC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Confidence 778999999999988888999999884 4568999999989999999999998876654 99999999888777666
Q ss_pred HHhhcccccccccch---hh-hhh-----------------hhhHHHH---H---HHHHHhccCCcchHHHHHHHHHhhh
Q 037870 237 LGFVIYETRSANIRS---EK-KKV-----------------MENVEFT---T---KGMYKSMKCPQVWKPSLYMYLSLAV 289 (511)
Q Consensus 237 ~~~~~~e~~~~~~~~---~~-~~~-----------------~~~~~~~---~---~~~~~~l~~~~~~~~~~~~~~~~~~ 289 (511)
..+++||+++....+ ++ .+. .....+. . ...++++++|.++...+...+..+.
T Consensus 259 ~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (505)
T TIGR00898 259 LSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT 338 (505)
T ss_pred HHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHH
Confidence 667888876431110 00 000 0000000 0 1345677777776665443332221
Q ss_pred ccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhccc
Q 037870 290 SISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNL 369 (511)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (511)
..........+... .+.+... .....++..+++.++.+++.||+++|+.+..+.++..+..+.... ..
T Consensus 339 ~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~-~~---- 406 (505)
T TIGR00898 339 TAFSYYGLVLDLGN----LGGNIYL---DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF-VP---- 406 (505)
T ss_pred HHHHHHHHhccccc----cCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-cC----
Confidence 11111112222222 3444322 224556677888888999999999999988876655543322211 11
Q ss_pred ccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccch
Q 037870 370 ALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNL 449 (511)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~ 449 (511)
....+..+...++..+..+..+.....+..|..|++.|++++|+.++...+|+.++|.+.+ +.+. +.
T Consensus 407 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-~~-------- 473 (505)
T TIGR00898 407 ---VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-WL-------- 473 (505)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-HH--------
Confidence 1111222222233444445555566677889999999999999999999999999999988 4332 21
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcC
Q 037870 450 WLVILIRNVLRLATLGLIFLVPKADQS 476 (511)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (511)
...+.+.+++.+++.++..++||++++
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~lpet~~~ 500 (505)
T TIGR00898 474 FLPLVLFGGLALLAGILTLFLPETKGV 500 (505)
T ss_pred hhHHHHHHHHHHHHHHHHHcCcCCCCC
Confidence 122333444444455555677876653
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=212.37 Aligned_cols=344 Identities=10% Similarity=0.024 Sum_probs=216.0
Q ss_pred ccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChh
Q 037870 74 GSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLP 152 (511)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~ 152 (511)
.++..+.++.++++++|++..++|++.++..++..+ +|++|.++||++ |||+++.++.+...++..+..+.+++.
T Consensus 18 ~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g----~~r~~~~~~~~~~~~~~~~~~~~~~~~ 93 (418)
T TIGR00889 18 WGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWL----SAQKVYAVCHFAGALLLFFAAQVTTPA 93 (418)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 344455677777777999999999999999999887 999999999962 667788887777777777777776544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcch------hhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSI------EIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~------~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
. +.+.+++.+++.+...+..+++..+... .+...|.+..| .+|.++||.++|.+.....|+ +|++
T Consensus 94 ~--~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~ 164 (418)
T TIGR00889 94 G--MFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYI 164 (418)
T ss_pred H--HHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHH
Confidence 3 3444556666555444444444322211 01122444444 478899999998874333344 4666
Q ss_pred hhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCC-
Q 037870 227 LAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPK- 305 (511)
Q Consensus 227 ~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 305 (511)
.++..++..+..+++||+++.+++++ .+..+ ....+..+.+|+|.++...+..++............+.+..+..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~---~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 240 (418)
T TIGR00889 165 TAGSSALLGVFALTLPDIPVAKSTAK-MSIKV---MLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGR 240 (418)
T ss_pred HHHHHHHHHHHHhcCCCCCCCccccc-cCHHH---HhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcc
Confidence 66666654445567787643221110 10000 10112345788998877766655543322111111111111110
Q ss_pred ---CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHH
Q 037870 306 ---AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITE 382 (511)
Q Consensus 306 ---~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
..-+++.+..+....+..++.+++.+..+++.||+++|+++..+.++..+....... .. .. ....+..+..
T Consensus 241 ~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~-~~--~~---~~~~~~l~l~ 314 (418)
T TIGR00889 241 NPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY-GD--PE---YFGYALLFLS 314 (418)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-cC--cc---hhhHHHHHHH
Confidence 001234567788888889999999999999999999999998887666543222111 00 00 0011222233
Q ss_pred HHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHH-HHHHHHHhHHHHHHHHHHHHhc
Q 037870 383 QCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM-CIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~-~~~~lg~~~g~~l~g~l~~~~g 440 (511)
.++.++..+...+....++.|..|++.+|+++|+.+ ...++|..+||.++|++.+..|
T Consensus 315 ~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 315 MIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 445555555556666778899999999999999997 5678999999999999999876
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=221.88 Aligned_cols=349 Identities=15% Similarity=0.157 Sum_probs=253.2
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhccc-ccCCCCCchHHHHHHHHHHHHHHHHHhc-C-Chh
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAF-PIKGYHRRPYFVIAGVAGCVSALMFSLL-G-KLP 152 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~-~~~g~~Rr~~l~~~~~~~~~~~~~~~~~-~-~~~ 152 (511)
....+++++.+.+|+++..+|.+..+..+..++ +|+.|.++||. .++| ||||+++.+.+..+++..++... | +.+
T Consensus 20 ~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~llf~~~p~~~~ 98 (428)
T PF13347_consen 20 LSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLLFSPPPAGLS 98 (428)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHhhccccchhh
Confidence 344667777888999999999999998888777 99999999987 5667 99999999999999998888766 4 222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC-------Chh
Q 037870 153 ----IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL-------GPQ 221 (511)
Q Consensus 153 ----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~-------gw~ 221 (511)
...+.+..++..++......+..++.+|+.++ +++|.+..++...+..+|.++...+.+.+.+.. +|+
T Consensus 99 ~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~-~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~ 177 (428)
T PF13347_consen 99 FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPD-PDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR 177 (428)
T ss_pred hhhHHHHHHHHHHHHHHhhhhccCchhhcCcccccc-HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence 22235555666888888888889999999854 357999999988888888877777776665422 588
Q ss_pred hHHHHhhhHHHH-HHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeee
Q 037870 222 GALGVLAIPPVL-LIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYW 300 (511)
Q Consensus 222 ~~f~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
+..++.+++.++ ..+..+..||++++..++ +.+. +..+..+..++||.++...+..++.............||
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~---~~~~---~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~ 251 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKERSVEVTEQ---EKKI---SLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYY 251 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeeecccccccc---cccc---ccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 888888887777 445666778832222111 1111 122456778889988877776666555444344445566
Q ss_pred eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhh
Q 037870 301 YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 380 (511)
Q Consensus 301 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (511)
.++. .|.+ ...+.+.....++.+++.++.+++.||+|+|+.+..+.++..+..+...... ..+.+..+
T Consensus 252 ~~~v---l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 319 (428)
T PF13347_consen 252 FTYV---LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG--------PGSPWLVL 319 (428)
T ss_pred HHHH---hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH--------hhhHHHHH
Confidence 6655 3444 4566666788889999999999999999999999988777766444332221 12334444
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhcCC-------CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCC
Q 037870 381 TEQCVSHIISKIRWIPMIVLSTRLCP-------IGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTD 445 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~ 445 (511)
....+.+++.+..+....++..|.++ ++.+|..+|+.+...+++..+++.+.|.+.+..|+..+.
T Consensus 320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~ 391 (428)
T PF13347_consen 320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANA 391 (428)
T ss_pred HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCc
Confidence 45556666666666666667776655 567899999999999999999999999999999987654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=211.24 Aligned_cols=338 Identities=18% Similarity=0.165 Sum_probs=247.5
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+.............|.+.++ +|.+..+.+++.+...++..+ .|++|+++||+ +||+.+..+.++..++.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-----g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 9 FLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-----GRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHhhhhhHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CCchhhHHHHHHHHHHHHHHH
Confidence 33444445556677887766 899999999999999999877 99999999996 677788899999999988888
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
+.++.. .+++.+++.+++.+...+...+++.|..++ ++|++..++.+...++|..+++.+++.+.+..+||+.+++
T Consensus 83 ~~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 83 FASSLW--LLLVGRFLLGLGGGALYPAAAALIAEWFPP--KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred HhccHH--HHHHHHHHHHcccccccHhHHHHHHHhCCc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 876544 467778889999988888899999998843 5699999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCC
Q 037870 227 LAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKA 306 (511)
Q Consensus 227 ~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
.++..++..+...+++ |.++...+..++............+.+..+.
T Consensus 159 ~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 205 (352)
T cd06174 159 LAILGLLLALLLLFLL-------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-- 205 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh--
Confidence 8877776544444333 1122222222222221111111222222222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRN-LLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
.|.+..+.+.+.....++..++.++.+++.||+++|+ .+..+..+..+..+... . .++.+.......+
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~-------~~~~~~~~~~~~~ 274 (352)
T cd06174 206 -LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA---L-------APSLALLLVALLL 274 (352)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---H-------hccHHHHHHHHHH
Confidence 4788999999999999999999999999999999998 77776555554322211 1 1112333344456
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLG 465 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (511)
.++..+...+.......|..|+++|++.+|+.+...+++..+++.+.|.+.+..++. ..+.+..++.+++.+
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~--------~~~~~~~~~~~i~~i 346 (352)
T cd06174 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG--------GVFLILAALALLAAL 346 (352)
T ss_pred HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc--------hHHHHHHHHHHHHHH
Confidence 667777777788889999999999999999999999999999999999998854432 234444444444444
Q ss_pred HH
Q 037870 466 LI 467 (511)
Q Consensus 466 ~~ 467 (511)
..
T Consensus 347 ~~ 348 (352)
T cd06174 347 LL 348 (352)
T ss_pred Hh
Confidence 43
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=204.16 Aligned_cols=328 Identities=9% Similarity=0.018 Sum_probs=214.4
Q ss_pred hhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc-----CChhHH
Q 037870 81 TDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL-----GKLPIA 154 (511)
Q Consensus 81 ~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~-----~~~~~~ 154 (511)
.+.+.++++|+|.+|.+++.++..+.+.+ +.+.|++.||+ +.|+++.++.++..+.++.++++ ++ ..
T Consensus 57 ~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-----G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s--~~ 129 (462)
T PRK15034 57 TVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-----GGRRWTVFSTAILIIPCVWLGIAVQNPNTP--FG 129 (462)
T ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHHHcccCCC--HH
Confidence 44444446999999999999999999887 78889999996 55667778888888888888875 44 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhh-----c-------------
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSV-----N------------- 216 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~-----~------------- 216 (511)
.+++.+++.|++ +...+.....+.++. ++++||++.|+.....++|..+++++...+. +
T Consensus 130 ~lli~r~l~Gig-g~~f~~~~~~vs~wf--p~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~ 206 (462)
T PRK15034 130 IFIVIALLCGFA-GANFASSMGNISFFF--PKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGS 206 (462)
T ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHHC--CHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 467778888887 445566677777777 4466999999997666777766555554322 2
Q ss_pred cCChhhHHHHhhhHHHHHHH-HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCccc
Q 037870 217 HLGPQGALGVLAIPPVLLIV-LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHE 295 (511)
Q Consensus 217 ~~gw~~~f~~~~~~~~i~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 295 (511)
..+||.+.++.+++.++..+ .+++.++.+..+ ...++..+.+|+|+.|...++.++....+..+..
T Consensus 207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~-------------~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~ 273 (462)
T PRK15034 207 VMSLANAAWIWVPLLAIATIAAWSGMNDIASSR-------------ASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSA 273 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-------------cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Confidence 23477777776666655443 444444432211 1124566789999999888877765544443433
Q ss_pred ceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCc
Q 037870 296 GQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPD 375 (511)
Q Consensus 296 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (511)
.++++.... ++.........+..+...+..+++|+++||+|+++++..+.....+............ ....
T Consensus 274 ~lp~~~~~~-----~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~----~~~~ 344 (462)
T PRK15034 274 GFAMLAKTQ-----FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT----GSGN 344 (462)
T ss_pred HHHHHHHHH-----cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc----cccH
Confidence 344443332 2322222223455677888889999999999999999888765554332222221100 0011
Q ss_pred hhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCC---------------------cchHHHHHHHHHHHHHHHhHHHHHHHH
Q 037870 376 SFFVITEQCVSHIISKIRWIPMIVLSTRLCPI---------------------GIEGTFFALLMCIDSIGSLTSKWGGGI 434 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~g~~~gl~~~~~~lg~~~g~~l~g~ 434 (511)
.+..........+..++.....+.++.++.|+ ++.|.+.|+.++.+.+|+.+-|.+.|.
T Consensus 345 ~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~ 424 (462)
T PRK15034 345 FIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGM 424 (462)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHH
Confidence 12222222233445566666666666666663 267899999999999999999999898
Q ss_pred HHHHhc
Q 037870 435 VLHLLH 440 (511)
Q Consensus 435 l~~~~g 440 (511)
..+..|
T Consensus 425 ~~~~~g 430 (462)
T PRK15034 425 SLNMTG 430 (462)
T ss_pred HHHHcC
Confidence 888765
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=212.87 Aligned_cols=347 Identities=12% Similarity=0.091 Sum_probs=213.3
Q ss_pred ccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHH---HHhcC
Q 037870 74 GSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALM---FSLLG 149 (511)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~---~~~~~ 149 (511)
.....+.+|.++++++|.++.+.|++.++..+...+ +|++|+++||+ +||+.++.+....++.... ..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~ 92 (396)
T TIGR00882 18 MSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-----GLKKHLLWIISGLLVLFAPFFIYVFGP 92 (396)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566788888888999999999999999999887 99999999996 5666666554444333222 12222
Q ss_pred Ch---hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 150 KL---PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 150 ~~---~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
.. .....++.+++.+++.+...+..+.+..+.. ++++...+......++|.++||.++|.+.+ .+||..|++
T Consensus 93 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~ 167 (396)
T TIGR00882 93 LLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS----RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWL 167 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh----hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHH
Confidence 11 1112233345556665555555555554432 223445566667889999999999998865 599999999
Q ss_pred hhhHHHHHHHHHhh-cccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCC
Q 037870 227 LAIPPVLLIVLGFV-IYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPK 305 (511)
Q Consensus 227 ~~~~~~i~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (511)
.+++.++..+..+. .+|+++++...++.+. ++.++..++.++.+|||+++...+..+.............+.|.....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~ 246 (396)
T TIGR00882 168 GSGFALILMLLLMFAKPKAPSSATVANALGA-NASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFF 246 (396)
T ss_pred HHHHHHHHHHHHHHhCCCCchhhhhhccccc-ccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88877775444443 3433221110000000 000111245677889998876655544332211111112222332221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
.+.+.+....|.+.....+...++....+++.||+++|+.+..+..+..+..... .. .++.+..+....+
T Consensus 247 ~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~---~~-------~~~~~~~~~~~~l 316 (396)
T TIGR00882 247 ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGS---SF-------ATTALEVVILKML 316 (396)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH---Hh-------cCChHHHHHHHHH
Confidence 2235666778888888888888889999999999999998887765554422211 10 1122222222333
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHH-HHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFAL-LMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl-~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
.+...............+..|++.+++..+. .+...++|+.+++.++|++.|..|+
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~ 373 (396)
T TIGR00882 317 HAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGF 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 3433333333333455677888888887776 6788999999999999999998764
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=209.12 Aligned_cols=341 Identities=9% Similarity=0.061 Sum_probs=229.9
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHH-
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMF- 145 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~- 145 (511)
+..++.........|.+ ++++|+|+.+.|+..+.+.+++.+ +++.|+++||+ +||+.+..+.++.+++.+++
T Consensus 36 ~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-----G~r~~l~~g~~~~~~~~~l~~ 109 (438)
T PRK10133 36 FLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGLFLYALGAALFW 109 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHH
Confidence 45555555566677776 666999999999999999999988 99999999996 78889999999988888775
Q ss_pred --HhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc-c-----
Q 037870 146 --SLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN-H----- 217 (511)
Q Consensus 146 --~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~-~----- 217 (511)
.+++++ ..+++.++++|+|.+..++..+.++.+..++ ++|.+.++..+....+|..+|+.+++.+.. .
T Consensus 110 ~~~~a~~~--~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~--~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~ 185 (438)
T PRK10133 110 PAAEIMNY--TLFLVGLFIIAAGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_pred HHHhcCCH--HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 345544 4467889999999999999999998876532 345556888889999999999998876541 0
Q ss_pred --------------------CChhhHHHHhhhHHH-HHHH-HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCc
Q 037870 218 --------------------LGPQGALGVLAIPPV-LLIV-LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQ 275 (511)
Q Consensus 218 --------------------~gw~~~f~~~~~~~~-i~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (511)
.+||++|+....... +..+ .....||.+.++.+. + +..+..++.++.+++|.
T Consensus 186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~--~----~~~~~~~~~~~ll~~~~ 259 (438)
T PRK10133 186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD--A----KQGSFSASLSRLARIRH 259 (438)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc--c----cccchhhhHHHHHhCch
Confidence 256666654333332 2222 223344432211100 0 00111234457788888
Q ss_pred chHHHHHHHHHhhhccCccccee-eeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 037870 276 VWKPSLYMYLSLAVSISTHEGQF-YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYG 354 (511)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~ 354 (511)
++...+..++............+ |+.++. .|+++.+.++......++.++|.++.+++.||+++|+++..+.++..
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~---~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~ 336 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEI---PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM 336 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 77655544443332221111112 212222 69999999999999999999999999999999999998877755544
Q ss_pred HhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHH
Q 037870 355 ISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGI 434 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~ 434 (511)
+..+.. .+. +.. ..+....+.+++.+..+++.++...+..|+ +.+++.++.. +..+|..++|.+.|.
T Consensus 337 ~~~~~~-~~~---------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~ 403 (438)
T PRK10133 337 ALCLIS-AFA---------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_pred HHHHHH-HHc---------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHH
Confidence 322211 111 111 112223456777788888888888888775 4677777776 455788999999999
Q ss_pred HHHHhc
Q 037870 435 VLHLLH 440 (511)
Q Consensus 435 l~~~~g 440 (511)
+.+..|
T Consensus 404 l~~~~g 409 (438)
T PRK10133 404 VSDAAG 409 (438)
T ss_pred HHHhcc
Confidence 988765
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-26 Score=214.13 Aligned_cols=357 Identities=16% Similarity=0.140 Sum_probs=225.0
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
.++..+.+......+-. ++.+|+++...|++.+.+.+.+.+ .|+.|.++|| |+||.++.++..+..++.++.+
T Consensus 43 lmny~Dr~~iagv~~~v-~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-----yNR~~v~~vG~~iW~~Av~~~~ 116 (493)
T KOG1330|consen 43 LMNYADRYTIAGVLKEV-QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-----YNRKRVIAVGIFIWTLAVFASG 116 (493)
T ss_pred HHHHhhhhhhhhhhHHH-HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-----cCcceEEeeHHHHHHHHHHHHH
Confidence 45555544433333333 445999999999999999999877 9999999999 4899999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-PQGALG 225 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-w~~~f~ 225 (511)
++. .++.++++|.+.|+|-+...+..+.+++|..++ ++|++.+++++.+..+|+.+|.+.++.+.+..+ |||.|+
T Consensus 117 fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~--~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 117 FSN--HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD--DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHH--HHHHHHHHHHHhccchhhhcccchhHhhhcCcc--hhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 985 455678899999999999999999999999955 559999999999999999999999999988776 999999
Q ss_pred HhhhHHHHH-HHHHhhcccccccccchhhhhh--hhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeee
Q 037870 226 VLAIPPVLL-IVLGFVIYETRSANIRSEKKKV--MENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYT 302 (511)
Q Consensus 226 ~~~~~~~i~-~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
+.++++++. ++..++.+|+++...++.+.+. ..+.....++++...|+|.+....+-....++... .+++|..
T Consensus 193 ~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~G----s~sww~p 268 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIG----SLSWWAP 268 (493)
T ss_pred eehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhcc----ccchhhh
Confidence 999999885 4566667776653322211111 11233455777777777665443332222222111 1222221
Q ss_pred cCC----CCCCCChhH----HHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCC
Q 037870 303 DPK----AGPAFSQEF----VGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIP 374 (511)
Q Consensus 303 ~~~----~~~g~s~~~----~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (511)
... .-.|++..+ .|+....+.+|.++|..+.+++.+++.+.....+..+...........+...+. .....
T Consensus 269 ~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~-~~~~~ 347 (493)
T KOG1330|consen 269 AFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP-AFTSS 347 (493)
T ss_pred hHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH-hhhhH
Confidence 110 002333222 222224555666666666666665555533333333333322222111111000 00011
Q ss_pred chhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHh
Q 037870 375 DSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGS-LTSKWGGGIVLHLL 439 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~-~~g~~l~g~l~~~~ 439 (511)
..++.+++..+.....-....+..-+..+.+|+++|.+++++...+..+-+ .-+|.+.|.+.|++
T Consensus 348 s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 348 SMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 112222221122222222233333456699999999999999988877554 55566999999974
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=235.76 Aligned_cols=330 Identities=12% Similarity=0.031 Sum_probs=224.5
Q ss_pred HHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHH---HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 037870 94 SVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVI---AGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAI 169 (511)
Q Consensus 94 ~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 169 (511)
...++..+++.+++++ +|+.|+++||+ +||+++.. ..+...+..+.....++ .+.++++++++|++.++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-----~rk~~~~~~~~~~~~~~~~~~~~~~~~s--~~~l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-----DKAKLAKILKFAEIGIAALAIYGFHLNS--VPLLFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHh
Confidence 4578888889999887 99999999996 56665432 22222222222222343 34577889999999999
Q ss_pred HHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHHHHhhccccccccc
Q 037870 170 ADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANI 249 (511)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~ 249 (511)
..+...+++.++.+ +++|++++++.+++.++|.++||+++|++.+..||++.|++.++..++..++.+++++++....
T Consensus 125 ~~p~~~a~l~~~~~--~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1140)
T PRK06814 125 FGPIKYSILPDHLN--KDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAP 202 (1140)
T ss_pred hchHHHHhhHhhcC--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 99999999999984 4669999999999999999999999999999999999995555555555556666776543321
Q ss_pred chhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHH
Q 037870 250 RSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIG 329 (511)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 329 (511)
.. +......++....++.+.++|.++..++..++.++.........+.|.... +|.++...|++.+...++.++|
T Consensus 203 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~g~~~~~~g~~~~~~~~g~~ig 277 (1140)
T PRK06814 203 DL--KIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET---LGGDENVATLFLAVFSVGVAVG 277 (1140)
T ss_pred CC--eeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---cCCchHHHHHHHHHHHHHHHHH
Confidence 11 000011122234566677888888776655544433322223344444443 6889999999999999999999
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhc---cc-------ccCCCchhhhhHHHHHHHHHHHhhHhHHHH
Q 037870 330 VLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRW---NL-------ALGIPDSFFVITEQCVSHIISKIRWIPMIV 399 (511)
Q Consensus 330 ~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (511)
.++.+++.+|...++.+..+.++..+..+......... .. ....+..+..+...++.+++.++..++..+
T Consensus 278 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 357 (1140)
T PRK06814 278 SFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFA 357 (1140)
T ss_pred HHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999887766655444333332221111100000 00 000122233334445667777888888889
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 400 LSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 400 ~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
++++.+|++.+|+++|+.+++.+++..+++.++|.+.+
T Consensus 358 ~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 358 ALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998875
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=211.66 Aligned_cols=328 Identities=13% Similarity=0.021 Sum_probs=216.9
Q ss_pred CChHHHHHHHHHh--h---cchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhH------HHHHH
Q 037870 91 VQPSVVQIYIGLC--Y---LPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPI------AIALA 158 (511)
Q Consensus 91 ~s~~~~g~~~s~~--~---l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 158 (511)
.+.++.+.+.+.. . ++..+ +++.|+++||+ +||+.++.+.++..++.++++++++... ..+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-----GRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLL 101 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-----hhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHH
Confidence 4456666554432 2 22234 78999999996 6888888999999999999998887542 23567
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhh--------ccCChhhHHHHhhhH
Q 037870 159 CSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSV--------NHLGPQGALGVLAIP 230 (511)
Q Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~--------~~~gw~~~f~~~~~~ 230 (511)
.++++|++.+...+....++.|..+ +++|++..+..+.+..+|.++++.+++.+. +..+||+.|++.++.
T Consensus 102 ~r~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 179 (394)
T TIGR00883 102 ARLIQGFSLGGEWGGAALYLAEYAP--PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVL 179 (394)
T ss_pred HHHHHHhhccccccccHHHhhhcCC--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHH
Confidence 7889999888888888888888874 456899999999999999999998877653 357999999987766
Q ss_pred HHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCc--chHHHHHHHHHhhhccCcccceeeeeecCCCCC
Q 037870 231 PVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQ--VWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGP 308 (511)
Q Consensus 231 ~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
.++........+|+++.++++++++ +..++.++.+++++ ++......++............+.+..+. .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 250 (394)
T TIGR00883 180 VLIGLYLRRNLEETPVFEKAQEKHK------KKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT---L 250 (394)
T ss_pred HHHHHHHHHhcCCChhHHHHHhccc------cccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 6554444455666543221111000 01122344445544 44443333333222222222233333232 6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHH
Q 037870 309 AFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 388 (511)
Q Consensus 309 g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
|.++.+.+.+.....++.+++.++.+++.||+++|+.+.....+..+..+....... .....+..+....+.++
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~ 324 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL------DSGSFTLFFFLVLGLAL 324 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHHHH
Confidence 788888998888888899999999999999999998777554433322211111111 01122222333345556
Q ss_pred HHHhhHhHHHHHHhhcCCCcchHHHHHHH-HHHHHHHHhHHHHHHHHHHHHhc
Q 037870 389 ISKIRWIPMIVLSTRLCPIGIEGTFFALL-MCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~g~~~gl~-~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
..+....+....+.|..|++.|++++|+. +....+|..++|.++|++.+..|
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 325 IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 66677777888899999999999999985 45556788899999999999866
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-22 Score=197.83 Aligned_cols=366 Identities=15% Similarity=0.091 Sum_probs=249.9
Q ss_pred HHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 037870 97 QIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVID 175 (511)
Q Consensus 97 g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 175 (511)
++..++..+-.++ .|+.|.++|+- .+||+++....+++.+++.++.+.+...+....++.++...+.....+..+
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~----~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG----GRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc----ccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444 99999999985 378888888888888888888876444455566667788889999999999
Q ss_pred HHHhhcchhhhc------------------------cccchHHHHHHHHHHHHHHHHHHHHHhhcc--------CChhhH
Q 037870 176 ACIARNSIEIRA------------------------LAPDMQSLCGFCSAAGSLIGYAVSGFSVNH--------LGPQGA 223 (511)
Q Consensus 176 ~~~~~~~~~~~~------------------------~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~--------~gw~~~ 223 (511)
++++++.++++. +|++..+.-+..+++|+++.-.+.-.+... ..-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999865432 138999988888899998887776555321 235888
Q ss_pred HHHhhhHHHHH-HHHHhhcccccccccc-hhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeee
Q 037870 224 LGVLAIPPVLL-IVLGFVIYETRSANIR-SEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWY 301 (511)
Q Consensus 224 f~~~~~~~~i~-~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (511)
+.+.++..++. +...+++||++.++.. ..........++..+.+++..|.|.+.+.++..++.+-...........|.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a 308 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYA 308 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887774 4566778877652221 111111222333334445555667777666655554432222222222333
Q ss_pred ecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCh--HHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhh
Q 037870 302 TDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLR--NLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFV 379 (511)
Q Consensus 302 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (511)
... +|++..+...+..+..+.+++|+++.+++.||+|.| +++....++..+..+..++-.. ....+....+-+
T Consensus 309 ~~~---lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~--~~~~g~~~~~~f 383 (477)
T PF11700_consen 309 TEV---LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFW--PSFFGLKSPWEF 383 (477)
T ss_pred HHh---cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhh--hcccCcccHHHH
Confidence 333 799999998888999999999999999999999998 7877776655443332221000 112233344444
Q ss_pred hHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Q 037870 380 ITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVL 459 (511)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 459 (511)
....++.++..+.......++.+|+.|+++++..+|++......++.+||++.|.+.+..|-. ...+....+.
T Consensus 384 ~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~-------r~g~~~l~~l 456 (477)
T PF11700_consen 384 WVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ-------RYGFLFLLVL 456 (477)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------hhHHHHHHHH
Confidence 445557777777777788899999999999999999999999999999999999999987622 2334444455
Q ss_pred HHHHHHHHhhcCCCCcCcC
Q 037870 460 RLATLGLIFLVPKADQSDE 478 (511)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~ 478 (511)
.+++++++..++.+|.+++
T Consensus 457 f~~gl~ll~~v~~~~g~~~ 475 (477)
T PF11700_consen 457 FLIGLILLFFVDVEKGRED 475 (477)
T ss_pred HHHHHHHHhhccchhhhhc
Confidence 6667777777776655443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=212.23 Aligned_cols=369 Identities=13% Similarity=0.124 Sum_probs=259.5
Q ss_pred cccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 037870 87 DVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISA 165 (511)
Q Consensus 87 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (511)
.+++++..+.|++.+.+..|+.+ +...|+++||+ +-|+++..+.++.++++++..++.+.....+++.|+++|+
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-----G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-----GARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL 140 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence 45899999999999999999999 77799999996 4566788889999999999988776665567889999999
Q ss_pred HHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc-CChhhHHHHhhhHHHHHHHHHhhc-cc
Q 037870 166 GIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH-LGPQGALGVLAIPPVLLIVLGFVI-YE 243 (511)
Q Consensus 166 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~-~gw~~~f~~~~~~~~i~~~~~~~~-~e 243 (511)
+.+...++...+...+. +++||++..++...+..+|.+++.+++|++.+. +||+++|++.++.+++..++++++ .|
T Consensus 141 ~~g~~~pa~~~i~~~W~--P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWA--PPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHhHHHhhhhceeeeEC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988888 567899999999999999999999999999998 999999999999999976666544 44
Q ss_pred ccccccch--hhhhhhh-hHH-H-----HHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhH
Q 037870 244 TRSANIRS--EKKKVME-NVE-F-----TTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEF 314 (511)
Q Consensus 244 ~~~~~~~~--~~~~~~~-~~~-~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 314 (511)
+|.+.+.- ++.+..+ +.. + ...+++++++++.+|...+..+..+...+.+....|.|..+. +|+|..+
T Consensus 219 ~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V---L~f~v~~ 295 (466)
T KOG2532|consen 219 SPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEV---LGFDVRE 295 (466)
T ss_pred CcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---hCCChhh
Confidence 44332211 1111000 000 0 112578899999999888877766554444444445555555 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCC--------hHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 315 VGLIYALGAVASMIGVLIYHKTLKDYPL--------RNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 315 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
.|++.++..+...+..+++|.+.||... ||++.......... ..+.+. .......+..+....+.
T Consensus 296 ~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai--~l~~l~-----~~~~~~~~~a~~~l~~~ 368 (466)
T KOG2532|consen 296 TGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAV--FLLVLA-----FTSDEHRLLAVILLTIA 368 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHH--HHHeee-----ecCCCcchHHHHHHHHH
Confidence 9999999999999998999999887644 23333222222211 111111 11111122222222222
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHH
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGL 466 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (511)
....++..........+.+| ++.+..+|+.+.+.++...++|.+.|.+.+ - +...++..+|.+.+++.+++.++
T Consensus 369 ~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~----~t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 369 IGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-D----NTREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred HHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C----CCHHHHHHHHHHHHHHHHHhchh
Confidence 33334433333333334455 899999999999999999999999998875 1 13455677888887777777766
Q ss_pred HhhcCCCCcCcC
Q 037870 467 IFLVPKADQSDE 478 (511)
Q Consensus 467 ~~~~~~~~~~~~ 478 (511)
..+.-+.+.++.
T Consensus 443 f~~f~s~e~~~w 454 (466)
T KOG2532|consen 443 FLFFGSGEPAPW 454 (466)
T ss_pred eeEeecCcccCc
Confidence 655555555544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=200.63 Aligned_cols=343 Identities=10% Similarity=0.067 Sum_probs=229.1
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..++..++..+.+|.+ ++++|.|..+.|++.+...+++.+ .++.|++.||+ +||+.++.+.++++++.+++.
T Consensus 13 ~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-----G~r~~~~~g~~l~~~g~~l~~ 86 (410)
T TIGR00885 13 ALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-----SYKAGILLGLFLYALGAFLFW 86 (410)
T ss_pred HHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHH
Confidence 55566656666777776 455999999999999999999888 89999999996 788899999988888877754
Q ss_pred hcC-ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 037870 147 LLG-KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH-------- 217 (511)
Q Consensus 147 ~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~-------- 217 (511)
.+. ..++..+++.+++.|+|.+...+..+.++.+..++ ++|++.+++.+...++|..+||.+++.+...
T Consensus 87 ~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 87 PAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE--STATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 432 11344467788999999999999888988887743 4478889999999999999999999887532
Q ss_pred ------------------CChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHH
Q 037870 218 ------------------LGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKP 279 (511)
Q Consensus 218 ------------------~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (511)
.+||++|++.+++.++..+...+.++++.++++. ++ .+.+ .+.++.+|+|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~--~~--~~~~---~~~~~~~~~~~~~~~ 237 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDA--KQ--ISFS---ASLSRLARIRHYREG 237 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--cc--ccch---hhHHHHHhChhHHHH
Confidence 3699999988887666444333333222111111 10 1111 133456788888776
Q ss_pred HHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhh
Q 037870 280 SLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGML 359 (511)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~ 359 (511)
.+..+++........+.+..|..+. +.+.+....+........+..+|.++.+++.||.++|+++.....+..+..+.
T Consensus 238 ~l~~f~yvg~e~~~~s~l~~y~~~~--~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll 315 (410)
T TIGR00885 238 VIAQFFYVGVQIMCWTFIIQYAVRL--IPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLG 315 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 6655554443322222222222211 12444444454455555778899999999999999999887775555543222
Q ss_pred hHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 037870 360 DLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLL 439 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~ 439 (511)
... . +... .+....+.+++.+..++...++..+..+++......++..++ +|+.+.|.+.|++.|..
T Consensus 316 ~~~-~---------~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 316 SIF-A---------GGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHH-c---------CChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 211 1 1111 112223445666666777788888888877765555555544 99999999999999976
Q ss_pred c
Q 037870 440 H 440 (511)
Q Consensus 440 g 440 (511)
|
T Consensus 383 ~ 383 (410)
T TIGR00885 383 E 383 (410)
T ss_pred c
Confidence 4
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-25 Score=201.36 Aligned_cols=328 Identities=16% Similarity=0.124 Sum_probs=236.7
Q ss_pred cCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037870 89 QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGI 167 (511)
Q Consensus 89 ~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 167 (511)
++-+.+++|++.+...+...+ +|+.|++.||+ ++|..|+++..++..++++.++..++++ +++.|.++|+|.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-----Gy~ipm~~Gl~vmf~sTilFafg~sy~~--l~vAR~LQgvgs 173 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-----GYKIPMVAGLFVMFLSTILFAFGNSYPM--LFVARSLQGVGS 173 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHh-----ccccHHHHHHHHHHHHHHHHHHcchhHH--HHHHHHHhhhhH
Confidence 567888999999999888766 99999999997 6788889999999999999999886664 788899999999
Q ss_pred HHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHHHHhhccccccc
Q 037870 168 AIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSA 247 (511)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~ 247 (511)
++.++...++++|..+++ ++|++++|..-.+.++|.++||++||.+++..|.+.+|.+.+++.++-....+++-|+.+.
T Consensus 174 A~~~tsglamlAd~f~~d-~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPED-NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHhhhHHHHHHHcccc-hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 999999999999998754 5699999999999999999999999999999999999999999998855555554443222
Q ss_pred ccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHH
Q 037870 248 NIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASM 327 (511)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 327 (511)
..+.. ++-..+++++++|.++.........+.........++.|..+. ...+..+.|+.+....+...
T Consensus 253 ~~~~~---------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~---m~~p~w~~G~~fLp~~~~y~ 320 (464)
T KOG3764|consen 253 DPDST---------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET---MFTPGWEVGLAFLPASLSYA 320 (464)
T ss_pred Ccccc---------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh---ccCCCcceeeeecccccchh
Confidence 22110 1114578899999887665544343333333344455555554 34445588888888899999
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHhhhhh-HHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCC
Q 037870 328 IGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLD-LIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCP 406 (511)
Q Consensus 328 ~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 406 (511)
++..+.+.+.||++..+.+.....+..++.... ..+... + ...+.-.....+.+.......+|...+..+...
T Consensus 321 ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~---~---~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh 394 (464)
T KOG3764|consen 321 IGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS---I---AQLWVPNFGLGFGIGLADASLIPTLGYLVDPRH 394 (464)
T ss_pred ccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh---H---HHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhh
Confidence 999999999999996554443322222221111 111111 0 111111112222333334555666665555444
Q ss_pred Cc---chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 407 IG---IEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 407 ~~---~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
.. .-|.++++.....++|..+||.++|.+.+..|+.
T Consensus 395 ~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~ 433 (464)
T KOG3764|consen 395 VSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE 433 (464)
T ss_pred ccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH
Confidence 44 7899999999999999999999999999988754
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=207.43 Aligned_cols=330 Identities=14% Similarity=0.041 Sum_probs=213.8
Q ss_pred cchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcC-Chh
Q 037870 75 SFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLG-KLP 152 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~-~~~ 152 (511)
....+.+|.++++++|+|..+.+++.++..+++.+ ++++|+++||+ +||+.++.+.++..++.+++++++ +..
T Consensus 18 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (366)
T TIGR00886 18 FAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-----GPRYTTTLSLLLLAIPCLWAGLAVQSYS 92 (366)
T ss_pred HHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34455677656677999999999999999999887 89999999996 678888889999999988888877 544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc----------cCChhh
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN----------HLGPQG 222 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~----------~~gw~~ 222 (511)
. +++.+++.+++.+.. .....++.+.. ++++|+++.++.....++|..+++.+++.+.. +.+||+
T Consensus 93 ~--~~~~~~~~g~~~~~~-~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~ 167 (366)
T TIGR00886 93 V--LLLLRLFIGIAGGSF-ASCMPWISFFF--PKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW 167 (366)
T ss_pred H--HHHHHHHHHHhchhh-HhHHHHHHHhc--CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3 566788888876544 44567777777 34568999999887888888888877776654 348999
Q ss_pred HHH-HhhhHHHH-HHHHHhhcccccccccchhhhhhh----hhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccc
Q 037870 223 ALG-VLAIPPVL-LIVLGFVIYETRSANIRSEKKKVM----ENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEG 296 (511)
Q Consensus 223 ~f~-~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (511)
.|+ ..++...+ ..+...+.+|++++++++++.+.. ...++..++.++.+++|+++...+..++...........
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (366)
T TIGR00886 168 AFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSI 247 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 994 43444444 333444455544322111100000 000111224566788888776665544433322222223
Q ss_pred eeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCch
Q 037870 297 QFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDS 376 (511)
Q Consensus 297 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (511)
.+++..+. +|+++.+.+.+.....+..+++.++.+++.||+++|+.+..+........... .+.. . .....
T Consensus 248 ~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~--~---~~~~~ 318 (366)
T TIGR00886 248 FAMFFKDQ---FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLV-VLGL--V---SPLSL 318 (366)
T ss_pred HHHHHHHH---cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHH-HhcC--C---CcchH
Confidence 33344333 68899999988888888899999999999999999877766544333221111 1111 0 00022
Q ss_pred hhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 037870 377 FFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIG 424 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg 424 (511)
...+....+..+..+...........+..| +++|+++|+.++..++|
T Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 319 AVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 222222233344445555556667778777 79999999999888775
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=194.13 Aligned_cols=375 Identities=14% Similarity=0.146 Sum_probs=258.2
Q ss_pred ccC--CChHHH----HHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 037870 88 VQK--VQPSVV----QIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKL-PIAIALAC 159 (511)
Q Consensus 88 ~~g--~s~~~~----g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (511)
.+| .+..+. +.+++++.++.++ ..+.|+++||+ |||..+.++.++..++.+++.++... ....++..
T Consensus 48 r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~-----GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~G 122 (485)
T KOG0569|consen 48 RYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF-----GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILG 122 (485)
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 355 455544 4556667788777 77899999995 78888888887777776666654322 24458899
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHH--hhccCChhhHHHHhhhHHHHHHHH
Q 037870 160 SVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGF--SVNHLGPQGALGVLAIPPVLLIVL 237 (511)
Q Consensus 160 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~--l~~~~gw~~~f~~~~~~~~i~~~~ 237 (511)
|++.|+..+.......-++.|..|+ +.||........+..+|.++|..++.. +-+...|++.+....++.++..+.
T Consensus 123 R~i~Gl~~gl~~~~~pmyl~E~sP~--~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~ 200 (485)
T KOG0569|consen 123 RLIVGLACGLSTGLVPMYLTEISPK--NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL 200 (485)
T ss_pred HHHHHHHhHHHHHHHHHHHhhcChh--hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999854 669999998889999999999777643 224456999999998888888888
Q ss_pred Hhhcccccccccc----hhh-h-------------hhhh----hHHH------HHHHHHHhccCCcchHHHHHHHHHhhh
Q 037870 238 GFVIYETRSANIR----SEK-K-------------KVME----NVEF------TTKGMYKSMKCPQVWKPSLYMYLSLAV 289 (511)
Q Consensus 238 ~~~~~e~~~~~~~----~~~-~-------------~~~~----~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~ 289 (511)
..++||+|+.--. .++ + +..+ ..++ ....+++++++|..++.+...+.....
T Consensus 201 l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~ 280 (485)
T KOG0569|consen 201 LPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFA 280 (485)
T ss_pred HhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHH
Confidence 8999999864211 000 0 0000 0000 111367888998888775444333332
Q ss_pred c-cCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcc
Q 037870 290 S-ISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWN 368 (511)
Q Consensus 290 ~-~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 368 (511)
. ........+|.+....+.|++..+.-+.....++..++..+++..+.||.|||++++.+..++.+..+.........+
T Consensus 281 qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~ 360 (485)
T KOG0569|consen 281 QQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSN 360 (485)
T ss_pred HHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222233444444444446899998888888888999999999999999999999999988777765444433322111
Q ss_pred cccCCCchh-hhhHHHHHHHHHHHhhHhHHHH-HHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCc
Q 037870 369 LALGIPDSF-FVITEQCVSHIISKIRWIPMIV-LSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDF 446 (511)
Q Consensus 369 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~ 446 (511)
.. . +... ..++..++..+..++...|... +.+|++|++.|.++++...++..+...+-......+.+.+|-
T Consensus 361 ~~-~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~----- 433 (485)
T KOG0569|consen 361 SF-G-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP----- 433 (485)
T ss_pred Hh-h-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 11 1 1111 2234444555566666556554 566999999999999999999999999998888888887761
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcCCCCcCcCc
Q 037870 447 TNLWLVILIRNVLRLATLGLIFLVPKADQSDEL 479 (511)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (511)
+..+.+...+.+..+..++.+||+|+++..
T Consensus 434 ---~~filF~i~~~~~~i~~~~~lPETkgr~~~ 463 (485)
T KOG0569|consen 434 ---YVFILFVIPLAIFLIYLYRYLPETKGRTPY 463 (485)
T ss_pred ---hhhHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 223333444445555666699999987753
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=194.62 Aligned_cols=339 Identities=15% Similarity=0.181 Sum_probs=225.2
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
...+.++.|+++ .|+|.+|+|.+.++..+...+ +|+||.++||.. ++|+++.+..++.++........++++.
T Consensus 20 ~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~----~~~~~l~~~~l~~~~~~~~~~~~~~f~~- 93 (400)
T PF03825_consen 20 AFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFG----SAKRILALLSLLSALALLLLAFSSSFWW- 93 (400)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hHHHHHHHHHHHHHHHHHHHHHhccHHH-
Confidence 345567888888 899999999999999888777 889999999962 5677777777777776666666665443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHH-HHHhhccCC---hhhHHHHhhhH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAV-SGFSVNHLG---PQGALGVLAIP 230 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~-~g~l~~~~g---w~~~f~~~~~~ 230 (511)
++...++..+......+..+++..+..++++.+.|+.. ..+++|.+++... ++.+....+ ....+++.+..
T Consensus 94 -~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iR----lwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 168 (400)
T PF03825_consen 94 -LFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIR----LWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL 168 (400)
T ss_pred -HHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcch----hhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 33445555666666667777777776654444455555 4566666666443 233333322 33456666655
Q ss_pred HHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCC-
Q 037870 231 PVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPA- 309 (511)
Q Consensus 231 ~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 309 (511)
.++.....+.+|+.++++..+++. + +...++.++++|+|++...++..++.......+++....+..+ .|
T Consensus 169 ~~ll~~~~l~lp~~~~~~~~~~~~---~--~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~----~gg 239 (400)
T PF03825_consen 169 SLLLAGFALFLPKTPPKRSAKESV---K--KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQE----LGG 239 (400)
T ss_pred HHHHHHHHHhCCCCccccccCCCc---c--cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccc
Confidence 555555556677665322211100 0 1112345689999998877776665544322222112222222 44
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhh---hhHHHHHH
Q 037870 310 FSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFF---VITEQCVS 386 (511)
Q Consensus 310 ~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 386 (511)
.+....|.+..++.++.++.....+++.+|++.++++.++.+..++......... .+.... .+....+.
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~--------~~~~~~~~~~~l~q~lh 311 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS--------DPWPFIVALQLLGQLLH 311 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHhhh
Confidence 6777888888899999999999999999999999999998777765433222110 111111 11223457
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHH-HHHHhHHHHHHHHHHHHhccC
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCID-SIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~-~lg~~~g~~l~g~l~~~~g~~ 442 (511)
++..+..+.....++.+.+|++.|+++.|+++... .+|..+|..++|++.|.+|.+
T Consensus 312 G~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 312 GLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred hHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 77778888888899999999999999999998765 699999999999999998855
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-21 Score=180.02 Aligned_cols=375 Identities=15% Similarity=0.140 Sum_probs=262.8
Q ss_pred hhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhcccc-cCCCCCchHHHHHHHHHHHHHHHHHh-----cC-------C
Q 037870 84 YWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFP-IKGYHRRPYFVIAGVAGCVSALMFSL-----LG-------K 150 (511)
Q Consensus 84 ~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~~-~~g~~Rr~~l~~~~~~~~~~~~~~~~-----~~-------~ 150 (511)
.+..|++++..-++...++..+..-.+|.+|..||+.+ .+|+||-|++..+.+++..+..++++ .. +
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 34456999999999888887776666899999999997 89999999999999887776655543 22 2
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhh
Q 037870 151 LP--IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLA 228 (511)
Q Consensus 151 ~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~ 228 (511)
.+ .......+.+.|+|.....++..+++.|.++ +++|+++.++.+....+|.+++..+.|.+.+.++.....-+..
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~--e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~ 162 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAP--EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ 162 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 22 2234555667788888889999999999984 4669999999999999999999999999998876543332222
Q ss_pred ---hHHHHHHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCC
Q 037870 229 ---IPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPK 305 (511)
Q Consensus 229 ---~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (511)
+..+++.++..+-.|++.++....+++++.++++ .+.++..+|+.+++.++.++.......-...+-.|..+.
T Consensus 163 ~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~---a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~V- 238 (403)
T PF03209_consen 163 GVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFRE---AWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEV- 238 (403)
T ss_pred HHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHH---HHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHH-
Confidence 2222222333334444433322111222233333 344555789988888888776654433333344454444
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLK-DYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQC 384 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~-r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (511)
+|++..+...++.....+.++|..+.+++.. |.+.++.-..++..+.++... +.+.. . ..+.+.+-...+
T Consensus 239 --fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l-ii~a~----~--~~~~~~~~~~~~ 309 (403)
T PF03209_consen 239 --FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL-IILAG----P--LGSPWLFRPGVF 309 (403)
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH-HHHHH----h--cccchHHHHHHH
Confidence 7999999999999999999999999998876 566666666665555543222 22211 1 122334444556
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC--CCccchHHHHHHHHHHHHH
Q 037870 385 VSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTR--TDFTNLWLVILIRNVLRLA 462 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~ 462 (511)
+.++..++......+.+.+++++++.|+.+|.....+.++..+|..++|.+.|....-. +....+..+|.+-++..++
T Consensus 310 l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~ 389 (403)
T PF03209_consen 310 LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA 389 (403)
T ss_pred HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 77888888888888888999999999999999999999999999999999998754322 2344566677777777777
Q ss_pred HHHHHhhcCCC
Q 037870 463 TLGLIFLVPKA 473 (511)
Q Consensus 463 ~~~~~~~~~~~ 473 (511)
++.++..+.++
T Consensus 390 a~~ll~~l~~~ 400 (403)
T PF03209_consen 390 ALVLLGRLDRR 400 (403)
T ss_pred HHHHHHHhhhh
Confidence 77776655443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=202.46 Aligned_cols=347 Identities=10% Similarity=0.109 Sum_probs=222.5
Q ss_pred cchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHH-HHHHHHHHH-HHHHh----
Q 037870 75 SFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVI-AGVAGCVSA-LMFSL---- 147 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~-~~~~~~~~~-~~~~~---- 147 (511)
+...+..+.+++++.|+|++++|.+.++..+...+ +|+.|.++||++ .||..+.. +.+....+- ....+
T Consensus 24 gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg----~kK~Ll~~i~~l~~l~~pff~~v~~pll 99 (412)
T PF01306_consen 24 GIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLG----LKKHLLWFIAILLLLFGPFFIYVFGPLL 99 (412)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCT----TCSHHHHHHHHHHHTCHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788877899999999999998887766 999999999973 44544332 222222221 11111
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHh
Q 037870 148 LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVL 227 (511)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~ 227 (511)
..|... .+++..+..++......+..++++.+..++..-+.|++. ..+++|.+++..++|.+.+ .+.+..||+.
T Consensus 100 ~~n~~l-g~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R----~wGSig~ai~s~~~G~L~~-i~p~~~fwi~ 173 (412)
T PF01306_consen 100 QSNFWL-GAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRAR----MWGSIGFAIASLLAGILFN-INPNIIFWIA 173 (412)
T ss_dssp HTT-HH-HHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHH----HHhhHHHHHHHHHhheeee-eCccHHHHHH
Confidence 122221 122222223444445556678887776654433444444 7889999999999999987 4678889987
Q ss_pred hhHHHHHHHHHhhcc-cccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCC
Q 037870 228 AIPPVLLIVLGFVIY-ETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKA 306 (511)
Q Consensus 228 ~~~~~i~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (511)
.+..++..++.+..+ +.+++....+.++ .++.+...++..+++|+|++|...++.......+..+....+.|....-+
T Consensus 174 s~~~~il~lll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~ 252 (412)
T PF01306_consen 174 SAAAIILLLLLLLLKPDVPPQAEVADALG-AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQ 252 (412)
T ss_dssp HHHHHHHHHHHHSS---SSSSS-SSTTSS-S------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHcCCcCchhhhhhcccc-cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 766666544433333 3322211111010 01111234678899999999998887665544333333223333333222
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
..+.++..+|++.+...+..++...+.+++.+|+|.|+.+.++..++.+.-.... ..++.+.+.....+.
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~----------~~~~~~~i~~~klLH 322 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG----------FATNPWVISLIKLLH 322 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----------T--SHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh----------hhcchHHHHHHHHHH
Confidence 2355677899999999999999999999999999999999998777665422111 123455566667777
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHH-HHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALL-MCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~-~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
++-..+......-++++..|++..++.+.+. +...++|..+.+.++|.+.|.+|++
T Consensus 323 ~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~ 379 (412)
T PF01306_consen 323 ALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ 379 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence 8778888888889999999999999999986 6777899999999999999998854
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=197.45 Aligned_cols=327 Identities=14% Similarity=0.067 Sum_probs=217.6
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAI 155 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (511)
..+.+|.+.++ +|.|..+.|++.+++.+++.+ .++.|+++||+ +||+.+.++.+...++.+.+ ..++.. .
T Consensus 19 ~~~~lp~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~-~~~~~~--~ 89 (355)
T TIGR00896 19 VGPLLPQIRSA-LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-----GEERSVAAGLLLIAAGILIR-SAPGTA--L 89 (355)
T ss_pred CcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CchHHHHHHHHHHHHHHHHH-HhccHH--H
Confidence 34567776555 999999999999999999888 99999999996 67778888877777776665 555433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC--ChhhHHHHhhhHHHH
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL--GPQGALGVLAIPPVL 233 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~--gw~~~f~~~~~~~~i 233 (511)
+++.+++.+++.+...+....++.+..+ ++|+++.++.+.+.++|..+++.+++.+.++. +||+.|.+.++..++
T Consensus 90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 90 LFAGTALIGVGIAIINVLLPSLIKRDFP---QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5677888899888877666666666542 46899999999999999999999999988765 399998876654433
Q ss_pred HHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChh
Q 037870 234 LIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQE 313 (511)
Q Consensus 234 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 313 (511)
... .++|+.+++++++. +. . ....++.+|+|.++...+..++............+.+..+ .|++..
T Consensus 167 ~~~--~~~~~~~~~~~~~~-~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~----~g~~~~ 232 (355)
T TIGR00896 167 ALL--AWIPQVRRRVAANQ-TT--T-----RLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS----HGASAA 232 (355)
T ss_pred HHH--HHhhhhccccCCCC-CC--C-----CCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCHH
Confidence 322 23444332211110 00 0 0123456678877765554443332222222223333332 588999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHh
Q 037870 314 FVGLIYALGAVASMIGVLIYHKTLKDYP-LRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKI 392 (511)
Q Consensus 314 ~~g~~~~~~~~~~~~~~~~~~~l~~r~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
+.+.+.....++.+++.++.+++.||++ +|+.+..+..+..++.+.. .... ...... ...+.++..+.
T Consensus 233 ~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~--~~~l~g~~~g~ 301 (355)
T TIGR00896 233 TAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL-LFAP--------MHGLWA--WALVLGLGQGG 301 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH-HHhh--------hhHHHH--HHHHHHHhhhh
Confidence 9999999999999999999999999995 4555544444333322111 1111 001111 12234545555
Q ss_pred hHhHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 393 RWIPMIVLSTRL-CPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 393 ~~~~~~~~~~~~-~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
..+.......+. .+++++++.+++.+...+++..++|.+.|++.|+.|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 302 AFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 554444444444 455778999999999999999999999999999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=227.25 Aligned_cols=332 Identities=14% Similarity=0.074 Sum_probs=221.8
Q ss_pred hhhcccCCC--hHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH---hcCChhHHHHH
Q 037870 84 YWKDVQKVQ--PSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS---LLGKLPIAIAL 157 (511)
Q Consensus 84 ~~~~~~g~s--~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~ 157 (511)
++..+++.+ ....+++.+++.+++.+ +|++|+++||+ +||++++++.++.++..+++. ..++ +..++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-----grk~~l~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 107 (1146)
T PRK08633 35 TLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-----SKNRVIRIVKLFEVGLTLLIVLAYYLGW--FWLAF 107 (1146)
T ss_pred HHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHcc--HHHHH
Confidence 333335554 45578889999999877 99999999996 678888777665554444333 2343 44577
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc--------C-ChhhHHHHhh
Q 037870 158 ACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH--------L-GPQGALGVLA 228 (511)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~--------~-gw~~~f~~~~ 228 (511)
+.+++.|++.+...+...+++.|+.+ +++|++++++...+.++|.++|+.+++++.+. + +|++.+.+..
T Consensus 108 ~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 185 (1146)
T PRK08633 108 AVTFLLGAQSAIYSPAKYGIIPELVG--KENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL 185 (1146)
T ss_pred HHHHHHHHHHHhhchHHHhhhHHhcC--cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence 88899999999999999999999984 46699999999999999999999999999876 2 3444444443
Q ss_pred hHHHH-HHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCC
Q 037870 229 IPPVL-LIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAG 307 (511)
Q Consensus 229 ~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (511)
+...+ .++..+.+||.+.......+++.....+.....++.++++|.++..++..++...........++.+....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 262 (1146)
T PRK08633 186 LAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV--- 262 (1146)
T ss_pred HHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---
Confidence 33333 33444556765433221100100011122234456677788777665544433332222222233333333
Q ss_pred CCCChh-HHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFSQE-FVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s~~-~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+|++.. ..|++.....++.+++.++.+++.||.++++.+.++.++..+..+... .. ++.+..+...++.
T Consensus 263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~ 332 (1146)
T PRK08633 263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP-TA---------PSLASVLVLFFLF 332 (1146)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH-Hh---------hhHHHHHHHHHHH
Confidence 688888 889998899999999999999999999988777666544443221111 10 1222333344556
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
+++.++...+..+++.+.+|++.+|+++|+.+++.++|..+++.+++.+..
T Consensus 333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777788888999999999999999999999999888888776654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=203.70 Aligned_cols=360 Identities=10% Similarity=0.056 Sum_probs=219.2
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcc-hhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLP-SVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~-~~~~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+...+.+......++.|+++++|++..+.+++.+.+... +...++.|+++||+ ++||+.++++.+++.++.+.++
T Consensus 24 ~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~----~G~r~~~~~g~~~~~~g~~~~~ 99 (489)
T PRK10207 24 LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHL----LGTKRTIVLGAIVLAIGYFMTG 99 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhc----cchHHHHHHHHHHHHHHHHHHH
Confidence 445555555566778888888999999999998888754 55588999999993 2788899999999999999988
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
++++... .+++.+.++++|.+...+...+++.|..++++++|.+..++++.+.++|..+||.++|++.++.|||+.|++
T Consensus 100 ~~~~~~~-ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 100 MSLLKPD-LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNL 178 (489)
T ss_pred Hhccchh-HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 8765332 244668888999888888888999998865444578889999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHhhcc----cccccccc--hhhhhh-----------------hh--hHHHH----------------HH
Q 037870 227 LAIPPVLLIVLGFVIY----ETRSANIR--SEKKKV-----------------ME--NVEFT----------------TK 265 (511)
Q Consensus 227 ~~~~~~i~~~~~~~~~----e~~~~~~~--~~~~~~-----------------~~--~~~~~----------------~~ 265 (511)
.++..++.++.+...+ +.+.++.+ .+.... .+ ..... .+
T Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~ 258 (489)
T PRK10207 179 CGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAF 258 (489)
T ss_pred HHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7553333333333333 21101100 000000 00 00000 00
Q ss_pred HHHHhccCCcchHHHHH--HHHHhhhccCcccceeeeeec-CCC---CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037870 266 GMYKSMKCPQVWKPSLY--MYLSLAVSISTHEGQFYWYTD-PKA---GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKD 339 (511)
Q Consensus 266 ~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r 339 (511)
...+.+|+|.+....++ ..+......+.....+.+.++ ... +..+++.. +.....+..++..++.+++.+|
T Consensus 259 ~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~---~~~~n~~~iii~~pl~~~l~~r 335 (489)
T PRK10207 259 KLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVS---FQALNPFWVVVASPILAGIYTH 335 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHH---HHhHhHHHHHHHHHHHHHHHHH
Confidence 00122333333222221 111112122222223333322 111 11222222 2233444455666667788888
Q ss_pred CCChH-------HHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHH
Q 037870 340 YPLRN-------LLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGT 412 (511)
Q Consensus 340 ~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~ 412 (511)
.++|+ .+..+.++..++.+............-+....++.+...++.+....+..++....+.+.+|++.+|.
T Consensus 336 l~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~ 415 (489)
T PRK10207 336 LGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGF 415 (489)
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHH
Confidence 87665 24445444433322111000000000011123444445567777888888888999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 037870 413 FFALLMCIDSIGSLTSKWGGGIV 435 (511)
Q Consensus 413 ~~gl~~~~~~lg~~~g~~l~g~l 435 (511)
++|+++...++|+.+|..++...
T Consensus 416 ~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 416 ILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888887755
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=190.59 Aligned_cols=394 Identities=13% Similarity=0.103 Sum_probs=236.3
Q ss_pred ccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhccc-ccCCCCCchHHHHHHHHHHHHHHHHHhcCCh
Q 037870 74 GSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAF-PIKGYHRRPYFVIAGVAGCVSALMFSLLGKL 151 (511)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~-~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~ 151 (511)
..+....+++|+++ +|.+....+++..+..+...+ +|++|.++||. .++| |||++++.+.+...++..+++++++.
T Consensus 20 ~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~G-RRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 20 WALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFG-RRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCC-ChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 34445567777766 999999999999888877666 99999999975 4456 88888887788888888888776542
Q ss_pred h---------------HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHh--
Q 037870 152 P---------------IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFS-- 214 (511)
Q Consensus 152 ~---------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l-- 214 (511)
. ...+++...+..++......+..++++|..++++++++.+.++.+...++|.++|+.++++.
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1 12233344455567777777888999999976554456788888899999999999999875
Q ss_pred hccC-------------ChhhHHHHhhhHHHH-HHHHHhhcccccccccchh---h--hhhhhhHHHHHHHHHHhccC--
Q 037870 215 VNHL-------------GPQGALGVLAIPPVL-LIVLGFVIYETRSANIRSE---K--KKVMENVEFTTKGMYKSMKC-- 273 (511)
Q Consensus 215 ~~~~-------------gw~~~f~~~~~~~~i-~~~~~~~~~e~~~~~~~~~---~--~~~~~~~~~~~~~~~~~l~~-- 273 (511)
.+.+ +.|..|++.++..++ ..+..+..+|++...++.. + +..+.+....+++.++.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP 257 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLP 257 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCC
Confidence 2221 568899988877766 4556677888754221110 0 00001111223444444444
Q ss_pred CcchHHHHHHHHHhhhccCcccceeee------eecCCCCCCCChh-HHHHHH-HHHHHHHHHHHHHHHHHhccCCCh-H
Q 037870 274 PQVWKPSLYMYLSLAVSISTHEGQFYW------YTDPKAGPAFSQE-FVGLIY-ALGAVASMIGVLIYHKTLKDYPLR-N 344 (511)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~s~~-~~g~~~-~~~~~~~~~~~~~~~~l~~r~~~~-~ 344 (511)
|.+++..+..++.....+.+......| ......+..+++. ..|... ....+...+.+++..++.+|+|.| +
T Consensus 258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~ 337 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR 337 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 456666665555544322111001111 1111001111111 123333 455555567777889999999864 4
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhcc---------cccCCCc--hhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCC--cchH
Q 037870 345 LLFSAQLLYGISGMLDLIFILRWN---------LALGIPD--SFFVITEQCVSHIISKIRWIPMIVLSTRLCPI--GIEG 411 (511)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g 411 (511)
....+.++..++.....+.....+ ..+..+. .+..+....+.++..+..+..-++++++..|+ +..|
T Consensus 338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G 417 (477)
T TIGR01301 338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG 417 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCc
Confidence 445554444443332222221000 0000110 12333333445555555544446677777774 5679
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHH-hhcCCCCc
Q 037870 412 TFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLI-FLVPKADQ 475 (511)
Q Consensus 412 ~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 475 (511)
..+|+.|.+..+.+.+.....|.+.+.+|-.+ ...+.++++..+++.+.. +.+|+.+.
T Consensus 418 ~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~------~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 418 LSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGN------LPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999998777777332 134555556655555444 47887654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=196.41 Aligned_cols=360 Identities=12% Similarity=0.062 Sum_probs=215.4
Q ss_pred hcccccccchhhhhhhhhhcc--cCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDV--QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALM 144 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~ 144 (511)
+...+.+......+|.|++++ +|++..+.|++.+.+.+...+ .+++|+++||+ ++||+.++++.++.+++.++
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~----~G~~~~l~~~~~~~~~g~~~ 95 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRV----WGTKKTMVLGGIVLMLGHFM 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhh----cchHHHHHHHHHHHHHHHHH
Confidence 334444445566788888876 899999999999999988776 88899999993 26888899999999999888
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhh-ccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhH
Q 037870 145 FSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIR-ALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGA 223 (511)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~ 223 (511)
++++++.. .++..+++.++|.+...+...+++.+..++++ ++|++..++++.+.++|.++||.+++++.+++||++.
T Consensus 96 ~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~ 173 (475)
T TIGR00924 96 LAMSIYPD--LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVG 173 (475)
T ss_pred HHhcccHh--HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 88877533 34556777888888887888889888875432 4688899999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHhhcccc----cccccc-hhhhhhhhhHH------------H-----------H------------
Q 037870 224 LGVLAIPPVLLIVLGFVIYET----RSANIR-SEKKKVMENVE------------F-----------T------------ 263 (511)
Q Consensus 224 f~~~~~~~~i~~~~~~~~~e~----~~~~~~-~~~~~~~~~~~------------~-----------~------------ 263 (511)
|++.++..++..+.+++.++. ++++.+ .++++...... . .
T Consensus 174 f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (475)
T TIGR00924 174 FNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIF 253 (475)
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999876554433333333321 111110 00000000000 0 0
Q ss_pred -HHHHH-----HhccCCc--chHHHHHHHHHhhhccCcccceeeeeecCC----CCCCCChhHHHHHHHHHHHHHHHHHH
Q 037870 264 -TKGMY-----KSMKCPQ--VWKPSLYMYLSLAVSISTHEGQFYWYTDPK----AGPAFSQEFVGLIYALGAVASMIGVL 331 (511)
Q Consensus 264 -~~~~~-----~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~s~~~~g~~~~~~~~~~~~~~~ 331 (511)
.+... +.-|++. +....+...+....+.+..+.++.+..+.. .+.+.+ .+++.....+..++..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip---~~~~~~~n~~~iil~~p 330 (475)
T TIGR00924 254 FFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVP---VIWFQSLNPFWVVVGSP 330 (475)
T ss_pred HHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEEC---HHHHHhhhHHHHHHHHH
Confidence 00000 0001111 111111122222222222222332222211 112222 34444555555555544
Q ss_pred H----HHHHhcc-CCChHHH--HHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhc
Q 037870 332 I----YHKTLKD-YPLRNLL--FSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRL 404 (511)
Q Consensus 332 ~----~~~l~~r-~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (511)
+ ..++.|| .+.+... .++.++..++...........+.. ...+.++.+...++.++...+..+....++.+.
T Consensus 331 ~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~-~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~ 409 (475)
T TIGR00924 331 VLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG-GLTSPWFMVLIYLFQTLGELMISPLGLSWWTKI 409 (475)
T ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4 3455554 3333333 444444433322221111100000 112334444555666777777788888999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 405 CPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 405 ~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
+|++.||+++|++.....+|..+++.+.....+
T Consensus 410 aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~ 442 (475)
T TIGR00924 410 APQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV 442 (475)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998888888888887776654
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=183.84 Aligned_cols=371 Identities=11% Similarity=0.079 Sum_probs=252.1
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..++........+-..+++++|+|+.|.+++.++..+...+ ..+.|.+.||++ +|| +...+.++..+-++..+
T Consensus 23 f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG----gR~-~~~~s~~l~~IP~~~~~ 97 (417)
T COG2223 23 FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG----GRK-WTILSMLLLLIPCLGLA 97 (417)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC----chH-HHHHHHHHHHHHHHHHH
Confidence 344444444445555566678999999999999998877655 999999999973 555 55667777777777777
Q ss_pred hcCChh-HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC---hhh
Q 037870 147 LLGKLP-IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG---PQG 222 (511)
Q Consensus 147 ~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g---w~~ 222 (511)
++.... .+.+++..++.|++.+... ....+++... +|++.|.++|++. .+|+|..+...++-.++...| |+.
T Consensus 98 ~a~~~~~~~~ll~~gll~G~~GasFa-v~m~~~s~~f--P~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~ 173 (417)
T COG2223 98 FAVTYPSTWQLLVIGLLLGLAGASFA-VGMPNASFFF--PKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRN 173 (417)
T ss_pred HHccCCchHHHHHHHHHHhcccceeh-cccccccccC--ChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 754433 2345666666676655443 3455666666 4456899999998 999999999999988888888 998
Q ss_pred HHHHhhhHHHH-HHHHHhhcccccccccchhhhhhhhhHHHHH-HHHHHhccCCcchHHHHHHHHHhhhccCcccceeee
Q 037870 223 ALGVLAIPPVL-LIVLGFVIYETRSANIRSEKKKVMENVEFTT-KGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYW 300 (511)
Q Consensus 223 ~f~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
+..+..+..++ ....++...|.+..+++. + +.. .+++.++++++.|...++++........+...++.+
T Consensus 174 ~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~--~-------~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~ 244 (417)
T COG2223 174 VAGIYVVALAIAAVLAWLGMNDVPEHRASV--K-------PQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMY 244 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhccc--c-------ccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776666 445666666554422111 0 111 456678889999999887776655555555455544
Q ss_pred eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhh
Q 037870 301 YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVI 380 (511)
Q Consensus 301 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (511)
..+. ++.++...|.+...+.+.+.+...++|+++||+|.+|++......++++............ ..+..+..+
T Consensus 245 ~~~~---fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~---~~~~~~~~~ 318 (417)
T COG2223 245 LVTQ---FGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG---HGGSFVVFV 318 (417)
T ss_pred HHHh---cCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc---cCcchHHHH
Confidence 4444 7999999998888888889999999999999999999988887666654333222211110 012223333
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHH
Q 037870 381 TEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLR 460 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 460 (511)
.......++.+........++..+.| ++.|.+.|+...++++|+..-|...|...+..|. ....+.+...+.
T Consensus 319 ~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~-------~~~~f~~~~~~~ 390 (417)
T COG2223 319 AVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS-------YTGAFMLLLAFY 390 (417)
T ss_pred HHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc-------HHHHHHHHHHHH
Confidence 33344455666666666666666776 5888999999999999999999999999887661 122333444444
Q ss_pred HHHHHHHhhc
Q 037870 461 LATLGLIFLV 470 (511)
Q Consensus 461 ~~~~~~~~~~ 470 (511)
+.+.++.+.+
T Consensus 391 ~~a~v~~~~~ 400 (417)
T COG2223 391 LVALVLTWAL 400 (417)
T ss_pred HHHHHHHHHH
Confidence 5555544433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-20 Score=188.28 Aligned_cols=370 Identities=16% Similarity=0.157 Sum_probs=236.2
Q ss_pred HHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 037870 94 SVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADV 172 (511)
Q Consensus 94 ~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (511)
.+.+++.+...++..+ +++.|+++|++ +||+.++++.+++.++.++++++++.. .++++|++.|+|.+....
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~-----GRk~~l~~~~~~~~iG~ii~~~a~~~~--~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRI-----GRKKTLLLAVVLFLIGAIIIALAPSWY--QLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHhccchhhhhh
Confidence 4568999999999877 89999999996 799999999999999999999999654 478999999999999999
Q ss_pred HHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc--CChhhHHHHhhhHHHHHHHHHhhcccccccccc
Q 037870 173 VIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH--LGPQGALGVLAIPPVLLIVLGFVIYETRSANIR 250 (511)
Q Consensus 173 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~--~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~ 250 (511)
..+.+++|+. +++.||...+..+....+|..++..++ ...++ .+||..+.+..+++++..+..+++||++++..+
T Consensus 162 ~~piy~sEia--p~~~RG~l~~~~~l~~~~Gi~~~~~~~-~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~ 238 (513)
T KOG0254|consen 162 LAPVYISEIA--PAHIRGTLVSLYQLFITIGILLGYCIN-YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE 238 (513)
T ss_pred cchhhHhhcC--ChhhhHHHHHHHHHHHHHHHHHHHHHh-hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999998 446799999999999999999995555 44443 489999999888888866668889988765322
Q ss_pred hhhh----h------h--hhhHHHHH---H-----H---------HHHhccCCcchHHHHHHHHHhhh-ccCcccceeee
Q 037870 251 SEKK----K------V--MENVEFTT---K-----G---------MYKSMKCPQVWKPSLYMYLSLAV-SISTHEGQFYW 300 (511)
Q Consensus 251 ~~~~----~------~--~~~~~~~~---~-----~---------~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 300 (511)
..+. + . ..+..... + + ....+ +|..++..+.......+ .........+|
T Consensus 239 ~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y 317 (513)
T KOG0254|consen 239 KGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELF-SPKVRKRLIIGLLLQLFQQLTGINYVFYY 317 (513)
T ss_pred cCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhc-CcchHHHHHHHHHHHHHHHHhCCceEEee
Confidence 1100 0 0 00000000 0 0 11122 24444443322222222 12222334444
Q ss_pred eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhccccc--CCCchhh
Q 037870 301 YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLAL--GIPDSFF 378 (511)
Q Consensus 301 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 378 (511)
.....+..|.+... .....+.++..+++..+...+.||.|||+.++.+...+.++.+............. .....++
T Consensus 318 ~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (513)
T KOG0254|consen 318 STTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWL 396 (513)
T ss_pred hHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHH
Confidence 44433334554332 22234555666667777788999999999999998777765444332222111110 0111223
Q ss_pred hhHHHHHHHHHHHhhHhHHHH-HHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHH
Q 037870 379 VITEQCVSHIISKIRWIPMIV-LSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRN 457 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~ 457 (511)
.++...+..........|... +.+|..|.+.|++..++......+.+.+-......+.+..+ . ....+.+.+
T Consensus 397 ~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-----~--~~~f~~f~~ 469 (513)
T KOG0254|consen 397 AIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-----I--GGTFGYFGG 469 (513)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c--cchHHHHHH
Confidence 333333444444555555544 56899999999999999888888877766555555554433 0 112233444
Q ss_pred HHHHHHH-HHHhhcCCCCcCcCccch
Q 037870 458 VLRLATL-GLIFLVPKADQSDELIPV 482 (511)
Q Consensus 458 ~~~~~~~-~~~~~~~~~~~~~~~~~~ 482 (511)
++.+... .....+||+|.+..+..+
T Consensus 470 ~~~~~~~~fv~~~~pETkg~sleei~ 495 (513)
T KOG0254|consen 470 ICLLSLIIFVFFFVPETKGLTLEEIN 495 (513)
T ss_pred HHHHHHHHHheEEcccCCCCcHHHHH
Confidence 4444444 455689999987764333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-22 Score=195.46 Aligned_cols=367 Identities=14% Similarity=0.095 Sum_probs=255.1
Q ss_pred HhccCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCch
Q 037870 51 SSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRP 129 (511)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~ 129 (511)
...++|-++++.++...+..++...+. ...+.+. ++++.+..+++|+.++......+ .|+.+.+.||+ +.|+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~G-v~~~~~~-~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-----g~R~ 112 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFG-LLFEELM-DYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-----GCRT 112 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheeh-hhHHHHH-HHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-----CchH
Confidence 456888888888888878888877664 4445554 45999999999999998766655 99999999995 6888
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHH
Q 037870 130 YFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYA 209 (511)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~ 209 (511)
+++.+.++..+++++.+++++.+. .++...++.|+|.++...+....+..+. +++|+.+.|+...+..+|..+-|.
T Consensus 113 v~i~G~~v~~~g~~lssF~~~i~~-l~lt~gvi~G~G~~~~~~paiviv~~YF---~kkR~lA~Gia~~GsG~G~~~~~~ 188 (509)
T KOG2504|consen 113 VMIAGGLVAALGLLLSSFATSLWQ-LYLTFGVIGGLGLGLIYLPAVVILGTYF---EKKRALATGIAVSGTGVGTVVFPP 188 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHhhccchhhhcchhhhhhhHh---HHHHHHHHhhhhccCCcceeeHHH
Confidence 999999999999999999998554 4566677889998888877777777665 355999999999999999999999
Q ss_pred HHHHhhccCChhhHHHHhhhHHHHHHHHHhhcccccccc----------------------------cchhhh-------
Q 037870 210 VSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSAN----------------------------IRSEKK------- 254 (511)
Q Consensus 210 ~~g~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~----------------------------~~~~~~------- 254 (511)
+..++.+.+|||+.+++.+.+.+-.++....+++..... ++....
T Consensus 189 l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (509)
T KOG2504|consen 189 LLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNL 268 (509)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccch
Confidence 999999999999999998877765544444443311000 000000
Q ss_pred ----hhhhhHH--HHHHHH----HHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHH
Q 037870 255 ----KVMENVE--FTTKGM----YKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAV 324 (511)
Q Consensus 255 ----~~~~~~~--~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 324 (511)
+...+.+ ...... .+++++|.++...+...+...........++ ......|++..+...+.++.++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~----~~~~~~g~~~~~aa~l~Siigi 344 (509)
T KOG2504|consen 269 ATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLP----SYAKSLGLSSNDAAFLLSIIGV 344 (509)
T ss_pred hhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCChhhhHHHHHHHHH
Confidence 0000000 011112 4778888777666655544432222111122 2222378999999999999999
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhc
Q 037870 325 ASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRL 404 (511)
Q Consensus 325 ~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (511)
..+++.++.|.+.|+...++.......+... ++..+.+.. ....+..+....+.++..+...........++
T Consensus 345 ~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~-gl~~~~~p~-------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~ 416 (509)
T KOG2504|consen 345 SDIIGRIILGLLADKPGIRALVLFLLTLLIA-GLARLFLPF-------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDL 416 (509)
T ss_pred hhhhhhhhhhhhcCccccchHHHHHHHHHHH-HHHHHHHHH-------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998843333322221111 111111111 11223333444556666666555555677899
Q ss_pred CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 405 CPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 405 ~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
++.++-..++|+...+..++..+||.+.|++.|..|
T Consensus 417 ~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg 452 (509)
T KOG2504|consen 417 VGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG 452 (509)
T ss_pred cChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence 999999999999999999999999999998888765
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-21 Score=187.42 Aligned_cols=243 Identities=14% Similarity=0.130 Sum_probs=183.0
Q ss_pred hcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 037870 86 KDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGIS 164 (511)
Q Consensus 86 ~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 164 (511)
+++.+....+.+.+.+++.++|++ +++.|.+.||++ -.+.+....+...+..++....+|++ .+++.|++.|
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~-----ls~~l~~~~~~w~~~~~~~~~~~s~~--~~ialr~llG 145 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP-----LSKGLSVSGILWGLFGFLTAAVHSFP--GLIALRFLLG 145 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC-----hHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHH
Confidence 456899999999999999999998 899999999974 23344444445444444444455444 4788899999
Q ss_pred HHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhh------ccCChhhHHHHhhhHHHHH-HHH
Q 037870 165 AGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSV------NHLGPQGALGVLAIPPVLL-IVL 237 (511)
Q Consensus 165 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~------~~~gw~~~f~~~~~~~~i~-~~~ 237 (511)
+..+...|....++..+.+ +++|+..+++++...++|.++|.+++..+. ...||||.|++.+++.++. +++
T Consensus 146 l~es~~wP~~~~~lg~wy~--~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 146 LFESGGWPGVVAILGNWYG--KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred HHhcccchHHHHHHHhhcC--hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence 9999999998888888874 467999999999999999999999998763 3569999999999988884 567
Q ss_pred Hhhccccccccc--chhh-----hhhh----hh--HHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecC
Q 037870 238 GFVIYETRSANI--RSEK-----KKVM----EN--VEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDP 304 (511)
Q Consensus 238 ~~~~~e~~~~~~--~~~~-----~~~~----~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (511)
.+++|+.+.+.. +.++ ++.+ .. .+.....+++.+++|.+|...+..++.......+....+++...
T Consensus 224 f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~- 302 (495)
T KOG2533|consen 224 FFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKS- 302 (495)
T ss_pred EEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHc-
Confidence 778887765221 1111 0000 00 00234577889999999999888888776555554444444444
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037870 305 KAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY 340 (511)
Q Consensus 305 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 340 (511)
+.|+|..+...+.+...++++++.++.+.+.||.
T Consensus 303 --~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 303 --NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred --CCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 2679999999999999999999999999999994
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-20 Score=186.86 Aligned_cols=359 Identities=10% Similarity=0.023 Sum_probs=204.6
Q ss_pred ccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcch-hhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPS-VMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~-~~~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
..+.+.....+++.|+++++|++..+.+++.+.+.... ...+++|+++||+ ++||+.++.+.++..++..+++++
T Consensus 33 ~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~----~G~r~~~~~g~~~~~ig~~l~~~~ 108 (500)
T PRK09584 33 ERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV----LGTKRVIMLGAIVLAIGYALVAWS 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445567888888889999999988887765443 3367899999994 167888888888888888888876
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhh
Q 037870 149 GKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLA 228 (511)
Q Consensus 149 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~ 228 (511)
++.. ..+.+.+++.++|.+...+...+++.+..++++.+|.+..++++.+.++|..+||.++|++.+++|||+.|++.+
T Consensus 109 ~~~~-~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 109 GHDA-GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred cccH-HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 4322 234556777888888777777788888876544456667888899999999999999999999999999999887
Q ss_pred hHHHHHHH----HHhhcccccccccc--hhhhhh-------------------hhhHHHH----------HHHHHHhcc-
Q 037870 229 IPPVLLIV----LGFVIYETRSANIR--SEKKKV-------------------MENVEFT----------TKGMYKSMK- 272 (511)
Q Consensus 229 ~~~~i~~~----~~~~~~e~~~~~~~--~~~~~~-------------------~~~~~~~----------~~~~~~~l~- 272 (511)
+...+..+ ....++|..+++.. .+..+. ..+.... ........+
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAM 267 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 65444222 22233433111110 000000 0000000 000000000
Q ss_pred ----CCcchHHHHHHHHHhhhccCcccceeeeee----cC----CCCCCCChhHHHHHHH-HHHHHHHHHHHHHHHHhcc
Q 037870 273 ----CPQVWKPSLYMYLSLAVSISTHEGQFYWYT----DP----KAGPAFSQEFVGLIYA-LGAVASMIGVLIYHKTLKD 339 (511)
Q Consensus 273 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~~~l~~r 339 (511)
+++.+..+.. ++....++......+.... .. ..+...++.++..++. ...+...+...+.+++.+|
T Consensus 268 ~~~~~~~~~~~~~~-~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r 346 (500)
T PRK09584 268 KGAARRKMIVAFIL-MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR 346 (500)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC
Confidence 1112111111 1111111111111111111 11 1112233444443332 2233334444556777888
Q ss_pred CCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHH
Q 037870 340 YPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMC 419 (511)
Q Consensus 340 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~ 419 (511)
.+..+.+.++.++..++.+.... ........+..+.++.+...++.++...+..+....++.+.+|++.||+++|++..
T Consensus 347 ~~~~~~~~~G~~l~~l~f~~l~~-~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l 425 (500)
T PRK09584 347 LPMPHKFAIGMVLCSGAFLVLPL-GAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFL 425 (500)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 77777777776666554333221 11100000111223444455566777777778888899999999999999996544
Q ss_pred HHHHHHhHHHHHHHHHHHHh
Q 037870 420 IDSIGSLTSKWGGGIVLHLL 439 (511)
Q Consensus 420 ~~~lg~~~g~~l~g~l~~~~ 439 (511)
+.++|+.++|.+.+..
T Consensus 426 ----~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 426 ----TTAGAALIAGYVANLM 441 (500)
T ss_pred ----HHHHHHHHHHHHHHHh
Confidence 4455555555555433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=172.77 Aligned_cols=372 Identities=15% Similarity=0.106 Sum_probs=244.2
Q ss_pred chhhhhhhhhhcccCC---ChH----HHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh
Q 037870 76 FSKVVTDYYWKDVQKV---QPS----VVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL 147 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~---s~~----~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~ 147 (511)
......|+|+++..+. ++. -.|...++..+-.++ .|+.|.++|+.+ .||+++-....+..++.+++.+
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g----~Rk~~~~~f~~i~i~~~~~L~~ 108 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPG----PRKKFFGFFTAIGIISTFLLWF 108 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCC----CcchHHHHHHHHHHHHHHHHHH
Confidence 3444667777754333 433 344555555555444 999999999963 7888888888888888888888
Q ss_pred cCC-hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHH--HHh-h--------
Q 037870 148 LGK-LPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVS--GFS-V-------- 215 (511)
Q Consensus 148 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~--g~l-~-------- 215 (511)
.++ ..+...+++..+..++.....+..++++.+..++++ -++..+.-+....+|+.+.-++. +.+ .
T Consensus 109 i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~--~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~ 186 (438)
T COG2270 109 IPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN--MGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITII 186 (438)
T ss_pred hCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc--cCcccccccccccccchHHHHHHHHHHhcccccceeEE
Confidence 887 445556677788899999999999999999985543 45556655566677776655543 111 1
Q ss_pred -------ccCChhhHHHHhhhHHHHHH-HHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHh
Q 037870 216 -------NHLGPQGALGVLAIPPVLLI-VLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSL 287 (511)
Q Consensus 216 -------~~~gw~~~f~~~~~~~~i~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 287 (511)
+...-|.++.+.++..++.. ..++..++.+... ....+......++....+++..+++.+...++..++..
T Consensus 187 l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~-~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~ 265 (438)
T COG2270 187 LLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKIS-SPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYI 265 (438)
T ss_pred eeccCccccccchhHHHHHHHHHHHHHhHHHhccccccccc-ccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22345778888888888754 4555666554322 11111122334444455666667777776666554433
Q ss_pred hhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhc
Q 037870 288 AVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRW 367 (511)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (511)
-........--.|.. ..+|++..+..++.....+.+++|+++.|++.+|++.|+++..+.++..+.++.....-
T Consensus 266 DGv~til~~~~~fg~---~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~--- 339 (438)
T COG2270 266 DGVNTILAMGGVFGA---ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE--- 339 (438)
T ss_pred hhHHHHHHHHHHHHH---HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc---
Confidence 211111000011222 23799999999998889999999999999999999999999988776665443322111
Q ss_pred ccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCcc
Q 037870 368 NLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFT 447 (511)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~ 447 (511)
....+ +....+.++..+......-++..+++|++++++.+|+++..+..++.+||.+.+.+.+..|-..
T Consensus 340 ------~~~~f-~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r---- 408 (438)
T COG2270 340 ------GELDF-WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSR---- 408 (438)
T ss_pred ------ccHHH-HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchh----
Confidence 11112 2223355555566666677889999999999999999999999999999999999999877432
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCC
Q 037870 448 NLWLVILIRNVLRLATLGLIFLVPKAD 474 (511)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
..+....+...++++.+...|.++
T Consensus 409 ---~g~~~i~vll~iGl~~L~~v~~~~ 432 (438)
T COG2270 409 ---AGVLSIIVLLLIGLLLLLRVKVPG 432 (438)
T ss_pred ---hHHHHHHHHHHhhHhhEEeecCCC
Confidence 223333344455666566666543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-20 Score=181.61 Aligned_cols=333 Identities=14% Similarity=0.071 Sum_probs=197.8
Q ss_pred hhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 037870 80 VTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALA 158 (511)
Q Consensus 80 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (511)
.++.+.+| +|-+ ....|+.+...++.++ .|+.|+++|.+ +||.+++.+.++..++.+.++.+++... ++.
T Consensus 66 ~l~~I~~d-iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-----GRr~~~i~g~~l~vvG~Iv~atA~~~~~--~ia 136 (599)
T PF06609_consen 66 ILPYINAD-IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-----GRRYFFIIGSLLGVVGSIVCATAQNMNT--FIA 136 (599)
T ss_pred HHHHHHHh-cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-----cchHHHHHHHHHHHhHHHHhhcCCcHHH--HHH
Confidence 44544444 8775 5566888888888766 99999999996 7999999999999999999999987654 677
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHH-HH
Q 037870 159 CSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLI-VL 237 (511)
Q Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~-~~ 237 (511)
...+.++|.+..... ...+.|..+ .+.|+....+......+....++.++..+..+.+|||.|++..+...+.+ ..
T Consensus 137 g~~l~GvgaG~~~~~-~~~isEl~p--~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 137 GMVLYGVGAGVQELA-ALAISELVP--NKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHHHHHHhhHHHHHH-HHHHHHhcc--cchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 788888887777653 455788874 34465555444443334444567777666667799999999988776633 33
Q ss_pred H-hhcccccccccchhhhhhhhhHHH-----------------------------------------------------H
Q 037870 238 G-FVIYETRSANIRSEKKKVMENVEF-----------------------------------------------------T 263 (511)
Q Consensus 238 ~-~~~~e~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~ 263 (511)
. +..|+++++.+.+. .+.++.+++ .
T Consensus 214 ~~fY~PP~~~~~~~~~-~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~ 292 (599)
T PF06609_consen 214 FFFYFPPPRAQLHGRK-LSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW 292 (599)
T ss_pred HHHhCCCchhhhcccc-CcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh
Confidence 3 33333221111000 000000100 0
Q ss_pred H---H---HHHHhccCCcch-HHHHHHHHHhhhccCcccceeeeeecCCCCCCCCh---hHHHHHHHHHHHHHHHHHHHH
Q 037870 264 T---K---GMYKSMKCPQVW-KPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQ---EFVGLIYALGAVASMIGVLIY 333 (511)
Q Consensus 264 ~---~---~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~---~~~g~~~~~~~~~~~~~~~~~ 333 (511)
. + -.++++|+++.+ ..++..++....++.. ..+|.+....-++-++ ...+++.....++..+|..+.
T Consensus 293 ~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~---~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~ 369 (599)
T PF06609_consen 293 FGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSV---NILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVIL 369 (599)
T ss_pred hccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHH
Confidence 0 0 012455554333 2233333332222211 1111111100022222 245666667778888888888
Q ss_pred HHHhccCCChHHH-HHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHH
Q 037870 334 HKTLKDYPLRNLL-FSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGT 412 (511)
Q Consensus 334 ~~l~~r~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~ 412 (511)
+.+.++.++-|.. +.+.+++.+. ...+.... ..+....++..++.+++.+....+.....+-.+|++..|+
T Consensus 370 g~l~~~ir~~Kw~li~~~~~~ta~-~Gama~~~-------~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~ 441 (599)
T PF06609_consen 370 GLLFSKIRHIKWQLIFGSVLMTAF-CGAMAAVR-------PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGT 441 (599)
T ss_pred HHHHHHccchhHHHHHHHHHHHHH-HHHHHHcc-------CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHH
Confidence 8888776655544 3443333321 11111111 1121222344456666667777777777777899999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 037870 413 FFALLMCIDSIGSLTSKWGGGIVL 436 (511)
Q Consensus 413 ~~gl~~~~~~lg~~~g~~l~g~l~ 436 (511)
+.|+..+++.+|+.+|..+...+.
T Consensus 442 a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 442 ATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998886654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-21 Score=173.57 Aligned_cols=336 Identities=13% Similarity=0.156 Sum_probs=208.5
Q ss_pred cCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037870 89 QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGI 167 (511)
Q Consensus 89 ~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 167 (511)
.+.+..-.|++-+.+.+..++ .|+||.++|| |+||++++++.+..++...+.+.+.|+ ..+++.|++.|+.-
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-----yGRkpvll~c~~~va~s~ll~~~S~~F--~afv~aR~l~Gi~k 135 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDR-----YGRKPVLLACLIGVALSYLLWALSRNF--AAFVLARFLGGIFK 135 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhh-----hCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhcc
Confidence 455667788889999998887 9999999999 589999999999999999998888876 33566699988877
Q ss_pred HHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc---cCChhhHHH---HhhhHHHH-HHHHHhh
Q 037870 168 AIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN---HLGPQGALG---VLAIPPVL-LIVLGFV 240 (511)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~---~~gw~~~f~---~~~~~~~i-~~~~~~~ 240 (511)
+-..+ ..+++.|..++ ++|+..++.+....++|.++||++||++.+ ..|--+-++ +..++... .....++
T Consensus 136 gnl~v-~rAiisdV~se--k~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~ 212 (451)
T KOG2615|consen 136 GNLSV-IRAIISDVVSE--KYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWF 212 (451)
T ss_pred CchHH-HHHHHHhhcCh--hhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 65554 57899999844 668999999999999999999999999987 233222222 11122222 3345567
Q ss_pred cccccccccchhhhh-------hhhhH-HHHHHHHHHhccCCcchHHH------H-HHHHHhhhccCcccceeeeeecCC
Q 037870 241 IYETRSANIRSEKKK-------VMENV-EFTTKGMYKSMKCPQVWKPS------L-YMYLSLAVSISTHEGQFYWYTDPK 305 (511)
Q Consensus 241 ~~e~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 305 (511)
+||+-+.+++.+++. ...+. +-........+||++....+ . -.+.+...+....... .+. ..
T Consensus 213 lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~-~~l--~~ 289 (451)
T KOG2615|consen 213 LPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTV-LFL--TH 289 (451)
T ss_pred CCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhH-HHh--hc
Confidence 888754332221000 00000 00011122345555432211 1 1111111111111111 111 12
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYP--LRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQ 383 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (511)
+++|+++.+.|-+....++.+.+......+..+|.. .+..+.....++. ..+++.. ......+.....
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v----P~~llls------~~~~~~~l~~~s 359 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV----PAFLLLS------LARTPVVLYLGS 359 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH----HHHHHHh------ccccchhhhHHH
Confidence 458999999998876555555555444455555544 3333333322222 1111211 112222333445
Q ss_pred HHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCcc
Q 037870 384 CVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFT 447 (511)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~ 447 (511)
.+..+..+...+....++....|+++||+.+|+..+...++.++||.++|.+..+..-....+.
T Consensus 360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~ 423 (451)
T KOG2615|consen 360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYI 423 (451)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceee
Confidence 5667777777777788888999999999999999999999999999999988776544443333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=172.50 Aligned_cols=350 Identities=11% Similarity=0.014 Sum_probs=225.2
Q ss_pred chhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHH-HHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHH
Q 037870 56 STFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSV-VQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVI 133 (511)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~ 133 (511)
|+....+.+.|||...+.... ..+.|++ .+++|+|.++ .|.+.+++..+|++ +.+.|.++||+ |-|+++.+
T Consensus 25 W~~~~~~lC~fGF~~e~R~n~-s~a~p~L-~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-----G~K~vL~l 97 (511)
T TIGR00806 25 WRVLVLYLCFYGFMAQFRPGE-SFITPYL-LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-----RYKPVLVL 97 (511)
T ss_pred hhHHHHHHHHHHHHHHhhchH-HHHHHHH-HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHH
Confidence 444456667777888877544 4455655 4469999999 99999999999988 88999999996 56788999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 037870 134 AGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGF 213 (511)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~ 213 (511)
+.+...+.+++++++++ ...+.+.+++.|++.+... +...++..+. ++++|+++.++.+.+..+|.+++++++++
T Consensus 98 ~~l~Wsl~t~L~~fa~S--l~~L~i~R~llGvaEA~~~-A~~syI~~Wf--P~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 98 QALSFVCVWLLLLLGTS--VWHMQLMEVFYSVTMAARI-AYSSYIFSLV--PPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999774 4457888999999999888 7888888888 45679999999999999999999999999
Q ss_pred hhccCChhhHHHHhhh---HHHHHHHHHhhccccccc-----cc--------c--h--h--h--hh--hh----hhHHHH
Q 037870 214 SVNHLGPQGALGVLAI---PPVLLIVLGFVIYETRSA-----NI--------R--S--E--K--KK--VM----ENVEFT 263 (511)
Q Consensus 214 l~~~~gw~~~f~~~~~---~~~i~~~~~~~~~e~~~~-----~~--------~--~--~--~--~~--~~----~~~~~~ 263 (511)
+..+|||+-+.+.-+ ...+..+..+++|..++. .. + . + . .. .+ ...+..
T Consensus 173 -l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 251 (511)
T TIGR00806 173 -LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRM 251 (511)
T ss_pred -HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHH
Confidence 556899976554322 222344555667633220 00 0 0 0 0 00 00 112334
Q ss_pred HHHHHHhccCCcchHHHHHHHHHhhhccCcc-cceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 037870 264 TKGMYKSMKCPQVWKPSLYMYLSLAVSISTH-EGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPL 342 (511)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 342 (511)
..+++...+||.+.+..+...+....+.... .....|....+...+ .-|.+-.+..+.+.+..+..|++-.++.+
T Consensus 252 ~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~----yNG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 252 LSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNK----YNGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred HHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccc----cCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 4566777888988777666555444332221 122233322221111 33444456666677777888887655543
Q ss_pred hHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 037870 343 RNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDS 422 (511)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~ 422 (511)
-..+.++.+...-++++ +++.. ..+.|...+..+++...+.+..+....-+++....+.-|.++|+.+++.-
T Consensus 328 ~~~l~l~v~s~~~~gll-~~m~~-------t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl 399 (511)
T TIGR00806 328 WSKLLIAVVSAIQAGLV-FWMSQ-------SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVAT 399 (511)
T ss_pred hHHHHHHHHHHHHHHHh-hhhhc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHH
Confidence 33333332222222221 11111 23445555555666666677666666666777777888999998877766
Q ss_pred HHHhHHHH
Q 037870 423 IGSLTSKW 430 (511)
Q Consensus 423 lg~~~g~~ 430 (511)
+-..+-+.
T Consensus 400 ~LQtilT~ 407 (511)
T TIGR00806 400 ALKTIITA 407 (511)
T ss_pred HHHHheEE
Confidence 55554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=165.22 Aligned_cols=343 Identities=12% Similarity=0.068 Sum_probs=244.5
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..|+......+.+|.+ ++.++++..+.+++..+++.+|.+ ....|.+.+|+ ++|.-++.+..++++++.+..
T Consensus 23 fl~G~~~~l~diLip~l-~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-----gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 23 FLWGFITCLNDILIPHL-KEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-----GYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHhhcchhhHHHH-HHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHh
Confidence 44555555555667776 455999999999999999999988 77799999996 677788899999999888875
Q ss_pred hcC-ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 037870 147 LLG-KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH-------- 217 (511)
Q Consensus 147 ~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~-------- 217 (511)
-+. ...+..++...++.+.|.+...+..+.++..+.+++ +..+-+++.+....+|.++||.+++.++.+
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~--~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~ 174 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE--SAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSA 174 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch--hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCH
Confidence 333 234555777788999999999999999999988542 344557778899999999999999998762
Q ss_pred -----------CChhhHHHHhhhHHHHHHHHHhhc--ccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHH
Q 037870 218 -----------LGPQGALGVLAIPPVLLIVLGFVI--YETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMY 284 (511)
Q Consensus 218 -----------~gw~~~f~~~~~~~~i~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 284 (511)
..|+.++...+...+++.+..... |+.+...++..+.+ + ....+.+++|+++...+..|
T Consensus 175 ~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~------~--~~~~~l~~~~~~~~gvl~~F 246 (422)
T COG0738 175 AQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASG------S--AGLSSLFQNKHLRLGVLAIF 246 (422)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccc------c--chHHHHHhChHHHHHHHHHH
Confidence 136777777766655544433333 33333222111110 0 03467788999998888888
Q ss_pred HHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHh
Q 037870 285 LSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFI 364 (511)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~ 364 (511)
++........+.++.+..+. .|.+..+.....+...++.++|.++..++.+|+...|.+...+++..+.++... +.
T Consensus 247 lYVG~Eva~gsfl~~y~~~~---~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~-l~ 322 (422)
T COG0738 247 LYVGAEVAIGSFLVSYLEEL---LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVA-LI 322 (422)
T ss_pred HHHhHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 87665554444444444443 688999999888999999999999999999999999998887655554222211 11
Q ss_pred hhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 365 LRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
++ .+.+....+.+++.+..++...++..+..|++.. .-|..-.+..+|+++-|.+-|++.|..|..
T Consensus 323 ---------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts--~~s~~l~maivGGAiiP~l~G~i~d~~g~~ 388 (422)
T COG0738 323 ---------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS--VGSGLLVMAIVGGAIIPPLQGVIADMFGIQ 388 (422)
T ss_pred ---------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc--ccceeeeeheecchHHHHHHHHHHHhhhhH
Confidence 11 1222233466777888888888888888883332 334445667799999999999999988744
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=193.43 Aligned_cols=360 Identities=12% Similarity=0.049 Sum_probs=248.6
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+.+....++....++.+.++ ++++..+.|++.+.+.+++++ .++.|+++||. +||+++.++.++.+++.++++
T Consensus 43 ~~~~~~~g~~~~~l~~iek~-F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-----~r~~~i~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 43 LQGLLYNGLVNSSLTTIERR-FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-----HRPIVIGIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHHHHHhhchhhhhh-hCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-----CcceEEEecHHHHHHHHHHHh
Confidence 55666667777778877555 999999999999999999887 89999999995 677888889999999988887
Q ss_pred hcC-------------------------------------------------ChhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037870 147 LLG-------------------------------------------------KLPIAIALACSVGISAGIAIADVVIDAC 177 (511)
Q Consensus 147 ~~~-------------------------------------------------~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 177 (511)
+.+ +..+..+++.++++|+|.+...+...++
T Consensus 117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~ 196 (633)
T TIGR00805 117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY 196 (633)
T ss_pred ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence 753 1123446788999999999999999999
Q ss_pred HhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC----------------------ChhhHHHHhhhHHHHHH
Q 037870 178 IARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL----------------------GPQGALGVLAIPPVLLI 235 (511)
Q Consensus 178 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~----------------------gw~~~f~~~~~~~~i~~ 235 (511)
+.|.. ++++|++..++++.+..+|.++|+++++++.+.+ +|+..|++.+++.++..
T Consensus 197 i~d~~--~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 197 IDDFA--KSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhccC--CccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99988 4466999999999999999999999999987543 27777888888777755
Q ss_pred HHHhhcccccccccc--h---hhhh--------h----hhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCccccee
Q 037870 236 VLGFVIYETRSANIR--S---EKKK--------V----MENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQF 298 (511)
Q Consensus 236 ~~~~~~~e~~~~~~~--~---~~~~--------~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (511)
+.++++|++.++... + .+++ . ....++..+..+++++||.++...+..++.......+....+
T Consensus 275 v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP 354 (633)
T TIGR00805 275 IPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLP 354 (633)
T ss_pred HHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666654322110 0 0000 0 001123335567889999988877766665554444444444
Q ss_pred eeeecCCCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHhhhhhH--HHh---------
Q 037870 299 YWYTDPKAGPAFSQEFVGLIYALGAV-ASMIGVLIYHKTLKDYP--LRNLLFSAQLLYGISGMLDL--IFI--------- 364 (511)
Q Consensus 299 ~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~~~l~~r~~--~~~~l~~~~~~~~~~~~~~~--~~~--------- 364 (511)
.|.... +|+++.+.+++.....+ +.++|.++.|++.||++ .|+.+..+.++.++..+... ++.
T Consensus 355 ~yl~~~---~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ag 431 (633)
T TIGR00805 355 KYLENQ---YGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAPVAG 431 (633)
T ss_pred HHHHHH---cCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCccce
Confidence 444443 79999999988865554 67889999999999987 44555555444443322211 000
Q ss_pred --------------h----------h--ccc-------------ccC------------------------------C-C
Q 037870 365 --------------L----------R--WNL-------------ALG------------------------------I-P 374 (511)
Q Consensus 365 --------------~----------~--~~~-------------~~~------------------------------~-~ 374 (511)
. . ++. ..| . +
T Consensus 432 v~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~ 511 (633)
T TIGR00805 432 VNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKGLCN 511 (633)
T ss_pred eeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCCCCC
Confidence 0 0 000 000 0 0
Q ss_pred ----c-hhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Q 037870 375 ----D-SFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDS-IGSLTSKWGGGIVLHL 438 (511)
Q Consensus 375 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~-lg~~~g~~l~g~l~~~ 438 (511)
. ...+++..++..+...+..+|....+.+.+|+++|..+.|+...+.. +|..-+|.+.|++.|.
T Consensus 512 ~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 512 PPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDV 581 (633)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence 0 01122223333444555566777777799999999999999987776 6667799999999986
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-18 Score=154.74 Aligned_cols=326 Identities=16% Similarity=0.126 Sum_probs=230.2
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 037870 79 VVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIAL 157 (511)
Q Consensus 79 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (511)
+.++.+ ++++|+|.+..|+++++..+.+.. .|+..+++.|+ +-++.+..+.++.+++..+=... ....++
T Consensus 33 PLL~~I-r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-----g~er~l~~~Llli~~G~~iR~~~---~~~~L~ 103 (395)
T COG2807 33 PLLDEI-RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-----GEERSLFLALLLIAAGILIRSLG---GLPLLF 103 (395)
T ss_pred hhHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----hhHHHHHHHHHHHHHHHHHHhcc---cHHHHH
Confidence 344443 456999999999999999999876 99999999997 34455666777766666654443 233356
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhhHHHHhhhHHHHHHH
Q 037870 158 ACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL-GPQGALGVLAIPPVLLIV 236 (511)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~-gw~~~f~~~~~~~~i~~~ 236 (511)
....+.+.|.+..++..++++.+..+ ++-+..+++|....++|..+++.+.-.+.++. |||....+-+.++++.++
T Consensus 104 ~gt~l~G~gIav~nVLLPslIK~~Fp---k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~ 180 (395)
T COG2807 104 LGTLLAGAGIAVINVLLPSLIKRDFP---KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALL 180 (395)
T ss_pred HHHHHHHhhHHHHHHhhhHHHHhhcc---cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888877653 44688999999999999999999998898887 799998888888887766
Q ss_pred HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHH
Q 037870 237 LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVG 316 (511)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 316 (511)
+|+ |...+++... .+ ....+..+++|+|..|...+|.-+.+..++.....++.+..+ .|+|..+.|
T Consensus 181 ~Wl--Pq~~r~~~~~--~~------~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~----~G~sa~~aG 246 (395)
T COG2807 181 IWL--PQALREQAAS--IA------TKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID----RGLSAAEAG 246 (395)
T ss_pred HHh--hhcccccccc--cc------cccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH----cCCCHHHhh
Confidence 654 3321111110 00 001123457899999999999888877666555444444433 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhH
Q 037870 317 LIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIP 396 (511)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (511)
.+.+...+..+...++.+.+.+|...++-+.....++...+++.+.+.+.. ..+.. .++.++..+..++.
T Consensus 247 ~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~-------~~~lw---~~llG~G~G~~F~l 316 (395)
T COG2807 247 SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ-------LPILW---ALLLGLGQGGAFPL 316 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh-------HHHHH---HHHHhCccchHHHH
Confidence 999999999999999999999876544444444333333333333332211 11111 13445555666666
Q ss_pred HHHHHhhc-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 397 MIVLSTRL-CPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 397 ~~~~~~~~-~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
...++... ..++..+...|+.+.++++-..+||.+.|++.|..|
T Consensus 317 aL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 317 ALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 66666644 456778888999999999999999999999999866
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-20 Score=175.09 Aligned_cols=401 Identities=9% Similarity=0.025 Sum_probs=237.2
Q ss_pred hhHHHHHHHHhhcccccccchhhhhhhhhhcccC-------CChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCc
Q 037870 57 TFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQK-------VQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRR 128 (511)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr 128 (511)
+.+....+.+ |.+++....++...+.+-.-..| .++...+.+..+..++-++ |.++|++.|++ +||
T Consensus 41 k~i~iAG~Gf-ftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-----GRK 114 (538)
T KOG0252|consen 41 KAIIIAGMGF-FTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-----GRK 114 (538)
T ss_pred HHHHHhhhhh-cccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cch
Confidence 3334445555 77887776666665554332222 4455666777778888888 99999999996 789
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHH
Q 037870 129 PYFVIAGVAGCVSALMFSLLGKL-----PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAG 203 (511)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 203 (511)
+++...+++..+++++++++... -+..+...|++.|+|.+.-.|......+|.+. .+.||...+...+....|
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an--~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESAN--KKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhh--hccccceeEEEEEecchh
Confidence 99999999999988877764322 25567888999999999999988888888873 356888777766666666
Q ss_pred HHHHHHHHHHhhc----c-----------CChhhHHHHhhhHHHHHHHHHhhcccccccccchhhh------hhhh--hH
Q 037870 204 SLIGYAVSGFSVN----H-----------LGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKK------KVME--NV 260 (511)
Q Consensus 204 ~~lg~~~~g~l~~----~-----------~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~------~~~~--~~ 260 (511)
.+.|.+++-.+.. . .=||..|.+.+++.++.....+.+||+++.+....++ +..+ +.
T Consensus 193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~ 272 (538)
T KOG0252|consen 193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV 272 (538)
T ss_pred HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc
Confidence 6666665544421 0 1299999888888877777778889987655111000 0000 00
Q ss_pred ---------------HHHHHHHHHhccCC---cchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHH-------
Q 037870 261 ---------------EFTTKGMYKSMKCP---QVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFV------- 315 (511)
Q Consensus 261 ---------------~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~------- 315 (511)
++....+.+.+... ++......-|+.-...+... .+.....+..|+.+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~n----L~~s~I~~~ig~~~~~~~~~~~~~ 348 (538)
T KOG0252|consen 273 DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQN----LFQSVIFSAIGVIPSANTYHELFK 348 (538)
T ss_pred ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc----cHHHHHHHhhccCCCcchHHHHHH
Confidence 00000011111111 11111111111111111111 11111111123322221
Q ss_pred -HHHH-HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhh
Q 037870 316 -GLIY-ALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIR 393 (511)
Q Consensus 316 -g~~~-~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
.... .+...+.+.|.++...+.|+.||+...+.+.+++.+. .+.+...++........... ..+..++..+.
T Consensus 349 vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~---~~~~~~~y~~~~~~~Gf~v~---y~l~~ff~NFG 422 (538)
T KOG0252|consen 349 VAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIF---FFVIAGPYNQLENTIGFVVL---YSLTFFFGNFG 422 (538)
T ss_pred HHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHH---HHHHcCCcccccccCceeeh---HHHHHHHHhcC
Confidence 1112 2333444456666677889999999999997777753 33333223311111111111 11222222222
Q ss_pred H-hHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHhhcCC
Q 037870 394 W-IPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPK 472 (511)
Q Consensus 394 ~-~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
- .....+-+|.+|.+.||+..|+..+.+..|+.+|....+.+.+.- + .........+++...+.+++.++.+++||
T Consensus 423 Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-y--p~~~g~~~v~~i~~~~~~~gi~~T~l~pE 499 (538)
T KOG0252|consen 423 PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-Y--PPNIGVRNVFIILAGCMLLGILFTLLIPE 499 (538)
T ss_pred CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-C--CccccchHHHHHHHHHHHHhHheeEEeec
Confidence 1 112234569999999999999999999999999999988888731 0 11112345677888888888888889998
Q ss_pred CCcCcC
Q 037870 473 ADQSDE 478 (511)
Q Consensus 473 ~~~~~~ 478 (511)
++.++.
T Consensus 500 tk~~~l 505 (538)
T KOG0252|consen 500 TKGKSL 505 (538)
T ss_pred ccccCH
Confidence 887665
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=163.20 Aligned_cols=158 Identities=11% Similarity=0.049 Sum_probs=117.3
Q ss_pred cccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 037870 71 GFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLG 149 (511)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~ 149 (511)
.+.+......+|.|+++++|++..+.+.+.+.+.....+ .++.|+++||+ .+||+.++++.++..++.++++..+
T Consensus 22 ~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRi----lGrrr~iliG~il~~lg~lll~~~~ 97 (493)
T PRK15462 22 YFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV----LGNRMAVMLGALLMAIGHVVLGASE 97 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334455788888887999999999998888877555 77899999995 1677788888888888877666533
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhh
Q 037870 150 KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAI 229 (511)
Q Consensus 150 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~ 229 (511)
+.... ......+..+|.+...+...+++.|..++++++|.+..++.+.+.++|+.++|.+.|++.+.+||++.|.+.++
T Consensus 98 ~~~~~-~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 98 IHPSF-LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred cchhH-HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 21111 22223344455555556567888888865545689999999999999999999999999999999999998765
Q ss_pred HHHH
Q 037870 230 PPVL 233 (511)
Q Consensus 230 ~~~i 233 (511)
..++
T Consensus 177 gm~l 180 (493)
T PRK15462 177 GMIA 180 (493)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-17 Score=168.33 Aligned_cols=358 Identities=15% Similarity=0.109 Sum_probs=233.5
Q ss_pred cccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 037870 87 DVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISA 165 (511)
Q Consensus 87 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (511)
+....+.....+..+++.++..+ ..++|+++||+ |||++++.+.++..++.++.++++|+.. +++.|++.|+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-----GRk~~~~~~~~~~~i~~~~~a~a~~~~~--~~~~Rfl~G~ 183 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-----GRKPVLLVSLLLFIIFGILTAFAPNYWM--FLIFRFLSGF 183 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-----ccHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHh
Confidence 44677888888999999999999 55699999995 7999999999999999999999997664 7888999999
Q ss_pred HHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHHHHhhccccc
Q 037870 166 GIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETR 245 (511)
Q Consensus 166 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~ 245 (511)
+.+........+..|+. .++.|+.+.++ ......++.++++.++++.. +||+.+++.+++.++.++.+++.+|++
T Consensus 184 ~~~~~~~~~~~~~~E~~--~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~ 258 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIV--SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESP 258 (521)
T ss_pred hccchhHHhHhhheeec--CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence 99999999999999998 45679999988 77888888999999988887 899999999999888666666666887
Q ss_pred ccccchhhhh-------h-------hhh----HHHH--HH-----------HHHHhccCCcchHHHHHHHHHhhhccCcc
Q 037870 246 SANIRSEKKK-------V-------MEN----VEFT--TK-----------GMYKSMKCPQVWKPSLYMYLSLAVSISTH 294 (511)
Q Consensus 246 ~~~~~~~~~~-------~-------~~~----~~~~--~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 294 (511)
+....+.+.+ . ..+ .... .+ .+...++.|++....++..+.........
T Consensus 259 rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y 338 (521)
T KOG0255|consen 259 RWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVY 338 (521)
T ss_pred HHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHH
Confidence 6542211000 0 000 0000 00 12233444433333333333221111111
Q ss_pred cceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCC
Q 037870 295 EGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIP 374 (511)
Q Consensus 295 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (511)
....+- ..++|.+. .......+.....+....+...++.|||.....+..+..++.+........ .
T Consensus 339 ~gl~~~----~~~lg~~~---~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~-------~ 404 (521)
T KOG0255|consen 339 YGLSLN----VSGLGGNI---YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD-------L 404 (521)
T ss_pred Hhhhhh----hhhcCchH---HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc-------c
Confidence 111111 11123222 222233334666666777888999999988888866666544333222210 0
Q ss_pred chhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHH
Q 037870 375 DSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVIL 454 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~ 454 (511)
..+.......+..++.+..+........|+.|...|+.+.+..+....+++.++|.+......... .+.. ..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~-------~~~~-~~ 476 (521)
T KOG0255|consen 405 GGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP-------LLGL-IL 476 (521)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------cchH-HH
Confidence 101222333344555566666667788899999999999999999999999999988765544211 1111 11
Q ss_pred HHHHHHHHHHHHHhhcCCCCcCcC
Q 037870 455 IRNVLRLATLGLIFLVPKADQSDE 478 (511)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~ 478 (511)
......+.+++....+||++....
T Consensus 477 ~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 477 FGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCC
Confidence 233334444444468898887554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-22 Score=199.68 Aligned_cols=368 Identities=17% Similarity=0.202 Sum_probs=223.4
Q ss_pred hHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHH
Q 037870 93 PSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKL-PIAIALACSVGISAGIAIA 170 (511)
Q Consensus 93 ~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~ 170 (511)
..+.++..+...++..+ .++.|.++||+ +||+.++.+.++..++.++.++++.. +...+.+.|++.|++.+..
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~-----GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRY-----GRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45678888999999888 88899999995 78889999999999999999998822 2334678899999999999
Q ss_pred HHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc---CChhhHHHHhhhHHHHHHHHHhhccccccc
Q 037870 171 DVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH---LGPQGALGVLAIPPVLLIVLGFVIYETRSA 247 (511)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~ 247 (511)
.+....++.|.. +++.|++..++.+.+..+|.+++..++-.+.+. .+||..+++.+++.++..+..+++||+|++
T Consensus 120 ~~~~~~~~~E~~--~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~w 197 (451)
T PF00083_consen 120 YVVSPIYISEIA--PPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRW 197 (451)
T ss_pred cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence 999999999998 456789999988888888988888776544333 359999999988887776677889999765
Q ss_pred ccchhhhh--------------hhhhHHHHH----------HHHHHhccCCcchHHHHHHH-HHhhhccCcccceeeeee
Q 037870 248 NIRSEKKK--------------VMENVEFTT----------KGMYKSMKCPQVWKPSLYMY-LSLAVSISTHEGQFYWYT 302 (511)
Q Consensus 248 ~~~~~~~~--------------~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 302 (511)
-..+.+.+ ..++.++.. ...+++++++..++.....+ +.............++..
T Consensus 198 L~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 277 (451)
T PF00083_consen 198 LLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSP 277 (451)
T ss_pred ecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccc
Confidence 32211000 000000000 11233444433222211111 111111111112223333
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhH-HHhhhcccccCCCchhhhhH
Q 037870 303 DPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDL-IFILRWNLALGIPDSFFVIT 381 (511)
Q Consensus 303 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 381 (511)
...+..+.+.. -.......+..+++.++...+.||+|||+++..+..+..+..+... ......+.. .... ...+.
T Consensus 278 ~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~i~ 353 (451)
T PF00083_consen 278 SIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS-SWWS-ILSIV 353 (451)
T ss_pred ccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-cccce
Confidence 33233455555 1112334455556666667899999999998887666554333221 000000000 0001 11111
Q ss_pred HHHHHHHHHHhhHhHHH-HHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHH
Q 037870 382 EQCVSHIISKIRWIPMI-VLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLR 460 (511)
Q Consensus 382 ~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 460 (511)
...+.....+....+.. .+..|+.|.+.|++..|+.....++++.+++.+...+.+..+.. ........++.
T Consensus 354 ~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~-------~~~~i~~~~~~ 426 (451)
T PF00083_consen 354 FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGW-------GVFLIFAGVCL 426 (451)
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccchhhHHHHH
Confidence 11122222232333333 56689999999999999999999999999998888777655411 11122222333
Q ss_pred HHHHHHHhhcCCCCcCcC
Q 037870 461 LATLGLIFLVPKADQSDE 478 (511)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~ 478 (511)
+..++...++||++++..
T Consensus 427 i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 427 IAIIFVYFFLPETKGKTL 444 (451)
T ss_pred HHHhheeEEEeeCCCCCH
Confidence 334444568999998654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=137.54 Aligned_cols=356 Identities=12% Similarity=0.075 Sum_probs=212.4
Q ss_pred hccCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchH
Q 037870 52 SQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPY 130 (511)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~ 130 (511)
..++|.......... +...........+.+.+....|.+..|..+++.....++.+ .-.||..+|++ +||+-
T Consensus 73 grfq~yl~~~ag~gw--mad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-----grr~~ 145 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGW--MADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-----GRRKG 145 (528)
T ss_pred ccchhhHHHHhhhHH--HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-----hcchh
Confidence 345555444333332 22222333344444445566899999999999999999988 77899999997 56767
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHH
Q 037870 131 FVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAV 210 (511)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~ 210 (511)
...+.+..++.-.+.+.++|+.+ +.+++.+.++|.+. .+...++..|..+. ..|...+-.. ..+.+|.+....+
T Consensus 146 f~~T~l~t~v~~~is~~spnf~~--L~~f~~l~~~g~gg-~pv~~~~yle~lp~--~~r~~~~V~~-~~waig~v~ea~l 219 (528)
T KOG0253|consen 146 FNLTFLVTGVFGVISGASPNFAS--LCVFRALWGFGVGG-LPVDSAIYLEFLPS--SHRWLLTVMS-FFWAIGQVFEALL 219 (528)
T ss_pred hhhhHHHHHHHHHhhcCCCCeeh--hhHHHHHHhccCCC-ccHhHHHHHHhccC--cCCCcchhHH-HHHHHHHHHHHHH
Confidence 77778888888888888898775 56667777777766 44455555666543 3355555444 8889999999999
Q ss_pred HHHhhccCChhhHHHHhhhHHHHHHHHHhhcccccccccchhhh------------------------------hhhh--
Q 037870 211 SGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKK------------------------------KVME-- 258 (511)
Q Consensus 211 ~g~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~------------------------------~~~~-- 258 (511)
.=.++.++||||.......+..+.....+++||+++....+.++ ++.+
T Consensus 220 aw~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~ 299 (528)
T KOG0253|consen 220 AWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEES 299 (528)
T ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh
Confidence 98888999999999888877777777888999987543111000 0000
Q ss_pred hHH--------HHHHHHHHhccCCcchHHHHH---HHHHhhh-ccC----------cccceeee---eecCCC----CCC
Q 037870 259 NVE--------FTTKGMYKSMKCPQVWKPSLY---MYLSLAV-SIS----------THEGQFYW---YTDPKA----GPA 309 (511)
Q Consensus 259 ~~~--------~~~~~~~~~l~~~~~~~~~~~---~~~~~~~-~~~----------~~~~~~~~---~~~~~~----~~g 309 (511)
... +...+...++ .|++++..+. .++.+.+ +++ .....+.+ .....+ -..
T Consensus 300 ~~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~ 378 (528)
T KOG0253|consen 300 DLDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPL 378 (528)
T ss_pred chhhhhhccccccccchHhhc-ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCc
Confidence 000 0000111111 2222222111 1111111 111 00000100 000000 001
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHH
Q 037870 310 FSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHII 389 (511)
Q Consensus 310 ~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (511)
.+...+-- ..+..+..+.|.++.+.+.||.|||+.+....+++.+. .+.+.... .++. ..+..+..-++
T Consensus 379 s~~~dYrd-llitslaefPGlLIt~~iverlGRKkTMal~l~~f~if---lfll~~c~-----~rn~--~tvllf~araf 447 (528)
T KOG0253|consen 379 SVAKDYRD-LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIF---LFLLTTCK-----TRNA--YTVLLFTARAF 447 (528)
T ss_pred cchhHHHH-HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHH---HHHHHHhc-----Ccch--hHHHHHHHHHH
Confidence 11111111 14566788899999999999999999998886666542 22222110 1111 11111233344
Q ss_pred HHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHH
Q 037870 390 SKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGG 432 (511)
Q Consensus 390 ~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~ 432 (511)
....+...+.+..|+.|...|++..|....+..+|+.+.|.+.
T Consensus 448 isg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 448 ISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred HhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 4444555556677999999999999999999999999999988
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=142.73 Aligned_cols=266 Identities=12% Similarity=0.085 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc---------------
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH--------------- 217 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~--------------- 217 (511)
...+++..++.+.|.+...+..++++.++.++ +++.+.+++.+...++|.++||.+++.+...
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~--~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQVAANPYVSILGPI--ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc--chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 34577888999999999999999999999743 4478889999999999999999999988732
Q ss_pred -CChhhHHHHhhhHHHHHHHHHhhc--ccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcc
Q 037870 218 -LGPQGALGVLAIPPVLLIVLGFVI--YETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTH 294 (511)
Q Consensus 218 -~gw~~~f~~~~~~~~i~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 294 (511)
..|++++++.++..++..+.+.+. ||.++++.+. ...+++ .+.++.+++|+++...+..+++........
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~ 160 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVAR--VSSGDT-----TQKTSAFQFTHLVLGALGIFVYVGAEVSAG 160 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccc--cccccc-----cchhhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 368999997766655544443343 4433222111 000000 112245667777766665555544333333
Q ss_pred cceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCC
Q 037870 295 EGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIP 374 (511)
Q Consensus 295 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (511)
+..+.|..+. ..+|+++.+.+........+.++|.++.+++.||++.|+++..+..+..+..+ .... .+
T Consensus 161 ~w~~~yl~~~-~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~---l~~~-------~~ 229 (310)
T TIGR01272 161 SFLVNFLSDP-HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI---GAAL-------TH 229 (310)
T ss_pred HHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH---HHHH-------cC
Confidence 3333333221 22689999999999999999999999999999999999988776555544321 1111 01
Q ss_pred chhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 375 DSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
.... .....+.+++.+..++...+...+..|+ +.+++.++. ....+|+.++|.+.|.+.|..|.
T Consensus 230 ~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~ 293 (310)
T TIGR01272 230 GYVA-MWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI 293 (310)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence 1111 1122345666677777777777787774 456666775 57789999999999999998764
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-14 Score=146.67 Aligned_cols=154 Identities=11% Similarity=0.057 Sum_probs=114.4
Q ss_pred hhhhhhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCC----hhHHH
Q 037870 80 VTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGK----LPIAI 155 (511)
Q Consensus 80 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~----~~~~~ 155 (511)
..+.+ ++++|+|..+++++.++.......+++.|+++||+ +||++++++.++..++.++++++.+ .+.+.
T Consensus 49 ~s~~L-~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~-----G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~ 122 (591)
T PTZ00207 49 ISGAM-QARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYL-----GPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR 122 (591)
T ss_pred HHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH
Confidence 44544 55699999999998876433223377889999996 7888999999999999999988621 13444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHH-HHHHHHHhhccCChhhHHHHhhhHHHHH
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLI-GYAVSGFSVNHLGPQGALGVLAIPPVLL 234 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~l-g~~~~g~l~~~~gw~~~f~~~~~~~~i~ 234 (511)
+.+.+++.|+|.+...+.....+.++.+ ++||++.++...+.++|+++ +++..+++. .+|+..|++.++..++.
T Consensus 123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp---~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 123 LSVYNGLMTLGCMLFDLGAVVTVLSVFP---SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence 6777889999988887777777777763 56899999999999999976 555555444 36899999888887774
Q ss_pred H-HHHhhcccc
Q 037870 235 I-VLGFVIYET 244 (511)
Q Consensus 235 ~-~~~~~~~e~ 244 (511)
. +.+.+++++
T Consensus 198 ~ll~~~~vr~p 208 (591)
T PTZ00207 198 GILAIVFMRLP 208 (591)
T ss_pred HHHHHhheeCC
Confidence 3 444445443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-14 Score=134.99 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=116.8
Q ss_pred cCCChHHHHHHHHHhh-cchhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037870 89 QKVQPSVVQIYIGLCY-LPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGI 167 (511)
Q Consensus 89 ~g~s~~~~g~~~s~~~-l~~~~~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 167 (511)
+|++.++..-+.+.+. +.|....+.|+++||+ .++|+.+..+.++..++.++++.........+.+.+.+..+|.
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~----LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~ 131 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRV----LGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGT 131 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcc
Confidence 4488888776666654 5566677799999998 3677788889999999999988874122233566677777999
Q ss_pred HHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHHHHhhc
Q 037870 168 AIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVI 241 (511)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 241 (511)
+..-+....++.|..++++.+|-...++++++.|+|++++|.+.+++.++.||...|.+.++-..+.++.....
T Consensus 132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988889999998876544577789999999999999999999999999999999998877666644443333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-13 Score=133.30 Aligned_cols=305 Identities=16% Similarity=0.139 Sum_probs=191.9
Q ss_pred hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccc
Q 037870 110 KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALA 189 (511)
Q Consensus 110 ~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r 189 (511)
.|++|.++||+ +||..+......+.+..+.+.+.. ++ +++ ..-...+.+.......++++|...+ ++|
T Consensus 79 s~~iG~lSD~~-----grk~~L~~~~~~~~l~~~~~~~~~--~~--~~~-~~~l~g~~~~~~s~~~a~vadis~~--~~R 146 (463)
T KOG2816|consen 79 SPLIGALSDRY-----GRKVVLLLPLFGTILPALCLLFQG--YW--FFL-LLGLSGGFSAIFSVGFAYVADISSE--EER 146 (463)
T ss_pred HhhhHHhhhhh-----hhhhhHHHHHHHHHHhHHHHHHHH--HH--Hhh-hcccccchhhhhhhhhhheeeccch--hHH
Confidence 89999999994 789888888777777666665544 22 111 1111222333344556777888743 468
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHH-HHHHhhcccccccccchh--------hhhhhhhH
Q 037870 190 PDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLL-IVLGFVIYETRSANIRSE--------KKKVMENV 260 (511)
Q Consensus 190 ~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~--------~~~~~~~~ 260 (511)
....++.......+..++|.+++.+....|.-.+|.+.++..++. ....+++||+..++++.. .+....+.
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~ 226 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHV 226 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhh
Confidence 999999999999999999999999999999999999998888874 456778888866554331 00111112
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHHhhhccC-cccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHH-HHHhc
Q 037870 261 EFTTKGMYKSMKCPQVWKPSLYMYLSLAVSIS-THEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIY-HKTLK 338 (511)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~-~~l~~ 338 (511)
.+..+...+.-.+|..+......++....... .....+++.... ++++..+.+.+.+.......++..+. +.+.+
T Consensus 227 ~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~---f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~ 303 (463)
T KOG2816|consen 227 ADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK---FGWNKKEFSDLLSLVSILGIISQLLLLPLLSS 303 (463)
T ss_pred hhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeee---cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222322234444433333333322222 121333444333 89999999987766656666665554 46667
Q ss_pred cCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHH
Q 037870 339 DYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM 418 (511)
Q Consensus 339 r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~ 418 (511)
..+.|+....+.+.-....+.. ...++.| .... ............+...+..+..++++++|+++++..
T Consensus 304 ~l~~~~~i~lGl~~~~~~~~~~---af~~~~w-------~~~~-~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is 372 (463)
T KOG2816|consen 304 ILGEKRLISLGLLSEFLQLLLF---AFATETW-------MMFA-AGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIIS 372 (463)
T ss_pred HHhhhhHhhHHHHHHHHHHHHH---HHhccch-------hhhH-HHHHHHhhcchhHHHHhHHHhhcccccccchhhHHH
Confidence 7788886666655444322221 1111111 1111 112233344555666778889999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhc
Q 037870 419 CIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 419 ~~~~lg~~~g~~l~g~l~~~~g 440 (511)
.+..+...++|.+-+.+...+-
T Consensus 373 ~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 373 GIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred HHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999877654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=132.69 Aligned_cols=365 Identities=13% Similarity=0.113 Sum_probs=209.0
Q ss_pred hhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH---hcCChhHHH
Q 037870 80 VTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS---LLGKLPIAI 155 (511)
Q Consensus 80 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~---~~~~~~~~~ 155 (511)
++....+.+.+++.++..++.+++.+|-++ ..+.|++.||. +| -|.-.++.+.++ .++-+..+ ..+ .++.
T Consensus 65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~--fg-ir~gtii~~~fv-~~GqliFa~Ggi~~--aFw~ 138 (459)
T KOG4686|consen 65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR--FG-IRLGTIILCIFV-FLGQLIFAAGGISH--AFWT 138 (459)
T ss_pred hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh--hh-hhHHHHHHHHHH-HHHHHHHHhchHHH--HHHH
Confidence 344455555788888999999999999877 77799999994 22 222222222222 23322222 223 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCCh------hhHH---HH
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP------QGAL---GV 226 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw------~~~f---~~ 226 (511)
....|++.|+|.-....+-+.+...+. +.++.+.++|+..+...+|+.+-..+-+++.+..+- +... ..
T Consensus 139 M~~GRF~FGIGgESlAVaQN~yav~wF--KGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~ 216 (459)
T KOG4686|consen 139 MLAGRFLFGIGGESLAVAQNKYAVYWF--KGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLC 216 (459)
T ss_pred HHhhheeeccCchhhhhhhcceeEEEe--cCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHH
Confidence 788899999987666666666666555 336788899988888888988877777777654321 0010 00
Q ss_pred hhh-HHHHHHHHH--hhcccccccccchhhhh-hhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeee
Q 037870 227 LAI-PPVLLIVLG--FVIYETRSANIRSEKKK-VMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYT 302 (511)
Q Consensus 227 ~~~-~~~i~~~~~--~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (511)
.+. .+....++. .-..|.+.++.-+.++. ..+. ..+.+.. . -.|.+|...+..++......-+.+.-+.+.+
T Consensus 217 ~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge~--pkLtdv~-~-f~ppfw~~~iicv~yyva~fPFi~lg~~fF~ 292 (459)
T KOG4686|consen 217 FEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGEE--PKLTDVN-T-FYPPFWVLVIICVLYYVAWFPFITLGPMFFQ 292 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCC--ccccccc-c-cCccHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 111 111111111 11222221111100000 0000 0011111 1 1366777766555544322222222223333
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHH
Q 037870 303 DPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITE 382 (511)
Q Consensus 303 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
.. +|+|+...+.+.+..-..+.+.+.+.|.+.||.|++...+.+..+..+.+=..+.+ +.+ +.+..
T Consensus 293 ~r---fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-t~l-------sPy~~--- 358 (459)
T KOG4686|consen 293 KR---FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-TFL-------SPYTS--- 358 (459)
T ss_pred Hh---hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-hhc-------cHHHH---
Confidence 33 79999999988866666677777888999999999877776654444322111111 111 11111
Q ss_pred HHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Q 037870 383 QCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLA 462 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 462 (511)
..+.+..+.+..-...-.+..++|+++.||++|..+++.|+|-.+.|.+.|.++|.-| ++..+...+++...++++
T Consensus 359 m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g----~y~~le~ffl~~~~~aL~ 434 (459)
T KOG4686|consen 359 MTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG----SYDNLEAFFLIIGLMALT 434 (459)
T ss_pred HHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC----chhhHHHHHHHHHHHHHH
Confidence 1233334444333344566788999999999999999999999999999999988543 345555666666666676
Q ss_pred HHHHHhhcCCCC
Q 037870 463 TLGLIFLVPKAD 474 (511)
Q Consensus 463 ~~~~~~~~~~~~ 474 (511)
+...++.+.++.
T Consensus 435 svgil~~~N~kq 446 (459)
T KOG4686|consen 435 SVGILFYLNKKQ 446 (459)
T ss_pred HHHHHhheeccc
Confidence 666666665433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=125.27 Aligned_cols=363 Identities=13% Similarity=0.089 Sum_probs=212.7
Q ss_pred HHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhccc--ccCCCCCchHHHHHHHH
Q 037870 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAF--PIKGYHRRPYFVIAGVA 137 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~--~~~g~~Rr~~l~~~~~~ 137 (511)
..+.+.| ..||+..++.. .+|.+++. -|+|.++.+ +.+....|+.++.+|.|+.|.. .++| |||.+++-+..+
T Consensus 34 llLl~LY-llQGiP~GL~~-~iP~lL~a-k~vSyt~~a-~fS~ay~P~sLKllWaPiVDs~y~k~~G-rrksWvvp~q~l 108 (510)
T KOG3574|consen 34 LLLLFLY-LLQGIPLGLIG-AIPLLLQA-KGVSYTSQA-IFSFAYWPFSLKLLWAPIVDSVYSKRFG-RRKSWVVPCQYL 108 (510)
T ss_pred HHHHHHH-HHcCCchhHhh-hhHHHhcC-CCcchhhhh-hhhhhhhHHHHHHHHHhhhHHHHHHhhc-cccceeeehHHH
Confidence 5677788 89999999987 88999887 799999887 4567788999999999999933 2235 888888877777
Q ss_pred HHHHHHHHHhcCChh---------HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 037870 138 GCVSALMFSLLGKLP---------IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGY 208 (511)
Q Consensus 138 ~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~ 208 (511)
....+.+++...+.. .......+++..+..+.++++.++....+..+ ++-|-+. .+..+|.-.|.
T Consensus 109 lG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~--e~lgyaS----T~q~Vg~~~Gy 182 (510)
T KOG3574|consen 109 LGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR--ENLGYAS----TCQSVGQTAGY 182 (510)
T ss_pred HHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH--hhcCchh----HHHHHHHhhhH
Confidence 666666666543221 22233455777889999999999998777633 2233333 45555555555
Q ss_pred HHHHHhhc-----------cCChh---------hHHHHhhhHHHHH-HHHHhhcccccccccchhhhhhhhhHHHHHHHH
Q 037870 209 AVSGFSVN-----------HLGPQ---------GALGVLAIPPVLL-IVLGFVIYETRSANIRSEKKKVMENVEFTTKGM 267 (511)
Q Consensus 209 ~~~g~l~~-----------~~gw~---------~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 267 (511)
.+++.+.- ..+|. .-.+.-+.+..+. .+..++-+|.+.+.. ++...+..+..+-+
T Consensus 183 fL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~----~e~~~~i~~~yk~l 258 (510)
T KOG3574|consen 183 FLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD----EELELGIHESYKLL 258 (510)
T ss_pred HhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh----hhhhcCHHHHHHHH
Confidence 55544311 01222 1223333344442 233333333332211 22223444555667
Q ss_pred HHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC----
Q 037870 268 YKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKD-YPL---- 342 (511)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~---- 342 (511)
+++++-|.+.....+....-.... ........... +.|++....+++........++.....|++..+ .+.
T Consensus 259 ~~vLklk~v~~la~i~lt~K~gf~-a~da~t~LkLl---e~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~l 334 (510)
T KOG3574|consen 259 RDVLKLKSVRWLAGILLTGKLGFQ-AADALTSLKLL---EHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFL 334 (510)
T ss_pred HHHHcCccHHHHHHHHHHHHHHhh-hhhhccchHHH---HcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHH
Confidence 888888888777665544333222 22222222211 258888888877655555566666666666542 111
Q ss_pred hHHHHHHHHHHHHhhhhhHHHhhhccc-ccCCCchhhh--hHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHH
Q 037870 343 RNLLFSAQLLYGISGMLDLIFILRWNL-ALGIPDSFFV--ITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMC 419 (511)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~ 419 (511)
|.+. .-.+...+. .....+...+.. .-.++...++ +....+.++.....+...++..+++.|+...||+|.+.|+
T Consensus 335 ka~~-~R~~~~~~~-t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNT 412 (510)
T KOG3574|consen 335 KAVP-YRLGGGLVQ-TALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNT 412 (510)
T ss_pred Hhhh-HHHHHHHHH-HHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHH
Confidence 1111 110111110 011111111110 0011222222 2223333444444455667778899999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccCC
Q 037870 420 IDSIGSLTSKWGGGIVLHLLHVTR 443 (511)
Q Consensus 420 ~~~lg~~~g~~l~g~l~~~~g~~~ 443 (511)
..|+|+..-..+..+++|.+++..
T Consensus 413 LsnLGg~wp~tv~l~l~D~ltv~~ 436 (510)
T KOG3574|consen 413 LSNLGGNWPGTVALWLADGLTVKQ 436 (510)
T ss_pred HHHhcCCcHHHHHHHhcccCceee
Confidence 999999999999999999887644
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-13 Score=123.84 Aligned_cols=364 Identities=16% Similarity=0.050 Sum_probs=198.5
Q ss_pred chhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHH
Q 037870 56 STFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIA 134 (511)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~ 134 (511)
|.++++..+.. +.+++. ......+..+.++.+| +...+-|..-++++.+.. ....-|+.|++ +-|...+++
T Consensus 44 W~vLl~~slL~-~SN~~q-WI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-----GLR~a~llg 115 (480)
T KOG2563|consen 44 WVVLLAFSLLN-FSNGMQ-WIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-----GLRTALLLG 115 (480)
T ss_pred hHHHHHHHHHH-hcCcch-heeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-----chHHHHHHH
Confidence 33444443333 555443 3333344555566677 555666777777777665 67778999995 567777788
Q ss_pred HHHHHHHHHHHHhcCCh---hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcch--hhhccccchHHHHHHHHHHHHHHHHH
Q 037870 135 GVAGCVSALMFSLLGKL---PIAIALACSVGISAGIAIADVVIDACIARNSI--EIRALAPDMQSLCGFCSAAGSLIGYA 209 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~G~~lg~~ 209 (511)
..+.+++..+-..+... .....-+....+.+. +.+.+....+-+.+.. -++++|..+..+..++..+|.++|.+
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~ia-a~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIA-AAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHH-HHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 88877776665443322 111111111122221 2222222222112111 14577898888877888888888888
Q ss_pred HHHHhhccC------Chhh--HHHHhhhHHHHHHH-HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHH
Q 037870 210 VSGFSVNHL------GPQG--ALGVLAIPPVLLIV-LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPS 280 (511)
Q Consensus 210 ~~g~l~~~~------gw~~--~f~~~~~~~~i~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (511)
+.-.+..+. .|.. .|+..+++..+.+. ..+..+++++.++... ....+ -.+..+..++.++|+++...+
T Consensus 195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s-~~~~~-~~~f~~si~~~~~n~~F~il~ 272 (480)
T KOG2563|consen 195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSAS-QAALQ-DASFPKSIKSCFKNRQFIILA 272 (480)
T ss_pred ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchh-Hhhhh-cCcHHHHHHHHHcCccHHHHH
Confidence 887776543 3543 34444444444222 3333344333322211 11001 112446778899999887666
Q ss_pred HHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHH-HHHHHHHhhhh
Q 037870 281 LYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFS-AQLLYGISGML 359 (511)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~-~~~~~~~~~~~ 359 (511)
+...+.........+. ........|++....|.+.....+++++++.+.|.+.||.+.-+.... ......+..+.
T Consensus 273 ~~ygi~~g~F~~l~~~----l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~ 348 (480)
T KOG2563|consen 273 ICYGIGLGLFNSLSTL----LNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLM 348 (480)
T ss_pred HHHhhhHHHHHHHHHH----hhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5444433222222211 111111146666778888888889999999999999999865444333 32222222111
Q ss_pred hHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 037870 360 DLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLL 439 (511)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~ 439 (511)
...+.. .....+++.....+.+++.....+...-+..|..-|..+|+..|+.+..+++-+.+-..+-+...+..
T Consensus 349 l~~~t~------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~ 422 (480)
T KOG2563|consen 349 LLTCTL------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL 422 (480)
T ss_pred HHHhhc------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence 111111 11122222222334455544455545556678887788999999988888887777777777776654
Q ss_pred c
Q 037870 440 H 440 (511)
Q Consensus 440 g 440 (511)
+
T Consensus 423 ~ 423 (480)
T KOG2563|consen 423 G 423 (480)
T ss_pred C
Confidence 4
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-12 Score=121.21 Aligned_cols=375 Identities=15% Similarity=0.162 Sum_probs=217.4
Q ss_pred HHHHHHHhhcccccccchhhhhhhhhhc-ccCCChHHHHHHHHHhhcchhhhhHHHhhhccc--ccCCCCCchHHHHHHH
Q 037870 60 FGIILVYGLSQGFSGSFSKVVTDYYWKD-VQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAF--PIKGYHRRPYFVIAGV 136 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~--~~~g~~Rr~~l~~~~~ 136 (511)
..+.++| +.||+..++....+|.++++ ..++|.+|.| +.|+...|+.++.+|.|+.|-+ .++| |||.+++-...
T Consensus 3 ~lL~~LY-~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~-~fSla~~PfSlKlLWaPiVDs~y~~~~G-RRKSWiiP~Q~ 79 (544)
T PF13000_consen 3 ALLVLLY-FLQGIPLGLAFGSIPFLLQSMAKKVSYSQQA-IFSLASYPFSLKLLWAPIVDSVYSKRIG-RRKSWIIPIQY 79 (544)
T ss_pred eHHHHHH-HHcCcccccccccchhhhccccCCCChhHhe-eeeeeechhHHHHhhhhhhhhhcccccC-CcchhhhHHHH
Confidence 4567788 89999998876778888876 2578999987 4567778899999999999998 5677 89999888887
Q ss_pred HHHHHHHHHHhcCC----------------------hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHH
Q 037870 137 AGCVSALMFSLLGK----------------------LPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQS 194 (511)
Q Consensus 137 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 194 (511)
++++.++.++..-+ .....+....++..+-.+.+|++.++..-.+..+ ++++-+..
T Consensus 80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~--~n~~~AST 157 (544)
T PF13000_consen 80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSP--ENVGYAST 157 (544)
T ss_pred HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcCh--hhcchHHH
Confidence 77777666654320 0111233444456667788999999988666532 23444443
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-----c--------CCh---hhHHHHhhhHHHH-HHHHHhhccccccccc--------
Q 037870 195 LCGFCSAAGSLIGYAVSGFSVN-----H--------LGP---QGALGVLAIPPVL-LIVLGFVIYETRSANI-------- 249 (511)
Q Consensus 195 ~~~~~~~~G~~lg~~~~g~l~~-----~--------~gw---~~~f~~~~~~~~i-~~~~~~~~~e~~~~~~-------- 249 (511)
.-..+.++|..++..+--.+-+ . .|. ..-..+-+...++ ...+.++-+|++..+.
T Consensus 158 cqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~ 237 (544)
T PF13000_consen 158 CQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPIN 237 (544)
T ss_pred HHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccc
Confidence 2224555555554433322211 0 010 1112222333333 2334444555431110
Q ss_pred --chh---------h-----hhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChh
Q 037870 250 --RSE---------K-----KKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQE 313 (511)
Q Consensus 250 --~~~---------~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 313 (511)
+.+ + .++..+.++..+.+++++|-|++....+..+..-... ........+... +.|++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF-~a~da~T~LKLl---EkG~~KE 313 (544)
T PF13000_consen 238 KSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGF-QANDAVTSLKLL---EKGLSKE 313 (544)
T ss_pred cccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhcc-ccchhhhHHHHH---HcCCCHH
Confidence 000 0 0011234555677889999999988877766655532 222222222212 2689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC------------------h---------HHHHHHHHHHHHhhhhhHHHhhh
Q 037870 314 FVGLIYALGAVASMIGVLIYHKTLKDYPL------------------R---------NLLFSAQLLYGISGMLDLIFILR 366 (511)
Q Consensus 314 ~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------------------~---------~~l~~~~~~~~~~~~~~~~~~~~ 366 (511)
..+++..+..-..++..++.+|+.+.... | +....+...-.+..+........
T Consensus 314 ~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~ 393 (544)
T PF13000_consen 314 DLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYF 393 (544)
T ss_pred HhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEe
Confidence 98887766555666666677776542221 0 00011111111111111111000
Q ss_pred cccccCCCchhh--hhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q 037870 367 WNLALGIPDSFF--VITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTR 443 (511)
Q Consensus 367 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~ 443 (511)
....-..+...+ ++...++..+.....+...++.-+++++|..-||+|.+.|++.|+|+.--..+.-++.|.+....
T Consensus 394 fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~ 472 (544)
T PF13000_consen 394 FPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT 472 (544)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence 000001222222 23334455556666677777888899999999999999999999999999999999999876543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=127.30 Aligned_cols=165 Identities=14% Similarity=0.176 Sum_probs=118.1
Q ss_pred HHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Q 037870 264 TKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLR 343 (511)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 343 (511)
+.+.++++.+++...+++..++..+. ..+...+.+|.... .+-.+...|........+.++.-++.+++.+|.|+-
T Consensus 361 ~a~~~~~~~s~~~llff~~av~mG~g-~~lv~tFLfWHled---~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv 436 (618)
T KOG3762|consen 361 LADVGKVFASPHILLFFFVAVVMGAG-VGLVFTFLFWHLED---LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV 436 (618)
T ss_pred HHHHHHHhcCCCEEehhHHHHHHHHH-HHHHHHHHHHHHhh---cCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc
Confidence 34556778888766554433333221 22222333555443 455556667666777888899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHH-H
Q 037870 344 NLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCID-S 422 (511)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~-~ 422 (511)
+++..+..+..+..+.+-. ..+.|.++...++.+...+..+....++++..+|++.++++.|+..... .
T Consensus 437 ~v~~lgLa~~~~Rf~~~S~----------L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~G 506 (618)
T KOG3762|consen 437 NVMYLGLACNVGRFLYYSY----------LQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHG 506 (618)
T ss_pred ceeeehhhHHHHHHHHHHH----------hcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcc
Confidence 9998886666543322211 2344556667778899999999999999999999999999999998665 6
Q ss_pred HHHhHHHHHHHHHHHHhccC
Q 037870 423 IGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 423 lg~~~g~~l~g~l~~~~g~~ 442 (511)
+|-.+|++++|.+.+.+|..
T Consensus 507 lG~g~GslIGG~~v~~fg~~ 526 (618)
T KOG3762|consen 507 LGKGLGSLIGGFVVERFGAR 526 (618)
T ss_pred cCcchhhhhhhhhheeehhH
Confidence 99999999999999887643
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=131.35 Aligned_cols=360 Identities=13% Similarity=0.113 Sum_probs=190.8
Q ss_pred hcccccccchhhhhhhhhhc-ccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKD-VQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMF 145 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~ 145 (511)
|..+...+...+..-+|+++ |.+.+.+..|+++++..++.++ .|.+|.++.|.. +-||| ++.+.++++++.++.
T Consensus 44 fl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~---~~k~P-li~s~ii~~~g~llY 119 (488)
T KOG2325|consen 44 FLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTG---SVKKP-LIVSFLIAIIGNLLY 119 (488)
T ss_pred HHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccC---CcccC-HHHHHHHHHHHHHHH
Confidence 45555555555555555553 4788899999999999999888 999999999952 22555 566777777877766
Q ss_pred -H--hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc----cC
Q 037870 146 -S--LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN----HL 218 (511)
Q Consensus 146 -~--~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~----~~ 218 (511)
+ ..++...+.+++.|++.|+|.+... ..-+++++.. .+++|.++++....+..+|.++||.++..+.. .+
T Consensus 120 ~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s--~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~ 196 (488)
T KOG2325|consen 120 LALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADAS--TVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGF 196 (488)
T ss_pred HHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhcc--CccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCce
Confidence 3 3444344567888999999866544 3567777755 23557888887777777788888777755421 11
Q ss_pred ---------ChhhHHHHhhhHHHH-HHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcc----hHHHHHH-
Q 037870 219 ---------GPQGALGVLAIPPVL-LIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQV----WKPSLYM- 283 (511)
Q Consensus 219 ---------gw~~~f~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~- 283 (511)
-+..+-|+++++.++ ..++.++++|..+...+...++.++. +.-.+..+++++ ...+++.
T Consensus 197 ~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~~~vc~~~~ 271 (488)
T KOG2325|consen 197 MILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEE-----KSDIEKVKKPKLDWVAVLVCIFLR 271 (488)
T ss_pred EEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhh-----ccchhhhccCChhHHHHHHHHHHH
Confidence 123566777777777 44566677877665433211111000 000111222221 1111111
Q ss_pred HHHhhhccCcccceeeeeecCCCCCCCChhHH----HHHHHHHHHHHHHHHHHHHHHh-ccCCChHHHHHHHHHHHHhhh
Q 037870 284 YLSLAVSISTHEGQFYWYTDPKAGPAFSQEFV----GLIYALGAVASMIGVLIYHKTL-KDYPLRNLLFSAQLLYGISGM 358 (511)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~----g~~~~~~~~~~~~~~~~~~~l~-~r~~~~~~l~~~~~~~~~~~~ 358 (511)
+..........+....+.... ++++.++. |...++.++..+.-.+...... .++..|+.+..+++.......
T Consensus 272 ~~~~~~~~~iet~~~~~~m~~---y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~ 348 (488)
T KOG2325|consen 272 FVVNFIATTIETLSSALTMVM---YGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYY 348 (488)
T ss_pred HHHHHHHHHHHhccchHHHHH---hccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhh
Confidence 111111111111111111111 33333332 3333333333332222222222 333444444444222222111
Q ss_pred hhH-HHh-hhc--cc--------------ccC---CCchh-hhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHH
Q 037870 359 LDL-IFI-LRW--NL--------------ALG---IPDSF-FVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFAL 416 (511)
Q Consensus 359 ~~~-~~~-~~~--~~--------------~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl 416 (511)
... .+. ... +. |.. ....+ +.+...++.+...-+...+..++.+|+..++.+++..|+
T Consensus 349 i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~ 428 (488)
T KOG2325|consen 349 IFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGV 428 (488)
T ss_pred eeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEE
Confidence 111 000 000 00 000 00011 111122222322333444577888999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccC
Q 037870 417 LMCIDSIGSLTSKWGGGIVLHLLHVT 442 (511)
Q Consensus 417 ~~~~~~lg~~~g~~l~g~l~~~~g~~ 442 (511)
++.....+..+||.+.-.+....|.+
T Consensus 429 ~~~~~s~~~~~~~~~~t~~~~~~g~~ 454 (488)
T KOG2325|consen 429 FSISGSIARVVGPIFSTAIFTLSGPR 454 (488)
T ss_pred EEeccchhhhhhHHHHhhhHHhcCcc
Confidence 99999999999999888888877754
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-12 Score=128.46 Aligned_cols=367 Identities=13% Similarity=0.118 Sum_probs=240.2
Q ss_pred HHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHH
Q 037870 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAG 138 (511)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~ 138 (511)
.++...+ +.+++..+.+...+..+ .++++++..+.|++.+.+-++..+ ..+..++.-|. +|-+++-++.+++
T Consensus 100 ~~l~~~~-~~q~l~~~y~~s~Itti-ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-----HrPr~Ig~G~~~m 172 (735)
T KOG3626|consen 100 VLLSLAA-FAQGLYVGYFNSVITTI-ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-----HRPRWIGIGLVLM 172 (735)
T ss_pred HHHHHHH-HHHHhhhhhhhhhhhhh-hhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-----CccceeeechhHH
Confidence 3444444 78888877766666665 345999999999999999898776 67788888883 5666777888888
Q ss_pred HHHHHHHHhcC-----------------------------------------C---------hhHHHHHHHHHHHHHHHH
Q 037870 139 CVSALMFSLLG-----------------------------------------K---------LPIAIALACSVGISAGIA 168 (511)
Q Consensus 139 ~~~~~~~~~~~-----------------------------------------~---------~~~~~~~~~~~l~~~g~~ 168 (511)
+++.+++++.+ + ..+.+++.+-++.|+|..
T Consensus 173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T 252 (735)
T KOG3626|consen 173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT 252 (735)
T ss_pred HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence 88888877643 0 012345566677788887
Q ss_pred HHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC------------------C-hhhHHHHhhh
Q 037870 169 IADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL------------------G-PQGALGVLAI 229 (511)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~------------------g-w~~~f~~~~~ 229 (511)
...+....++-|.+.+ ++-....|+.++...+|+++|-++|+++...+ | |..-|++++.
T Consensus 253 pi~tlGisYiDDnvk~--~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~ 330 (735)
T KOG3626|consen 253 PIFTLGISYIDDNVKK--KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGA 330 (735)
T ss_pred CCccCCCccccccccc--cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHH
Confidence 7777777888777733 45678889999999999999999999985321 1 4455667777
Q ss_pred HHHHHHHHHhhcccccccccc----hh------h-------hhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccC
Q 037870 230 PPVLLIVLGFVIYETRSANIR----SE------K-------KKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSIS 292 (511)
Q Consensus 230 ~~~i~~~~~~~~~e~~~~~~~----~~------~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (511)
+.++..+.++++|.+.++..+ .+ + ....+++++..+.++++++||.+...++...+......+
T Consensus 331 ~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G 410 (735)
T KOG3626|consen 331 LLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITG 410 (735)
T ss_pred HHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 777766677777755443221 00 0 011123445556778899999877666655554443334
Q ss_pred cccceeeeeecCCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHhhhhhHHHhh----
Q 037870 293 THEGQFYWYTDPKAGPAFSQEFVGLIY-ALGAVASMIGVLIYHKTLKDYP--LRNLLFSAQLLYGISGMLDLIFIL---- 365 (511)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~~~l~~r~~--~~~~l~~~~~~~~~~~~~~~~~~~---- 365 (511)
+.+.++-|.... +|.++..+..+. .+...+..+|.+++|.+.+|+. .|.+..+..++..+..+.+.....
T Consensus 411 ~~tFlPKyLE~Q---fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~ 487 (735)
T KOG3626|consen 411 YITFLPKYLETQ---FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCE 487 (735)
T ss_pred HHHhhHHHHHHH---cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCC
Confidence 444444444333 788998888777 5666677788899999999875 344444443333332222111100
Q ss_pred ------------------h-c-----------------------c---------------cccC-----------CC---
Q 037870 366 ------------------R-W-----------------------N---------------LALG-----------IP--- 374 (511)
Q Consensus 366 ------------------~-~-----------------------~---------------~~~~-----------~~--- 374 (511)
. . + .... .+
T Consensus 488 ~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~ 567 (735)
T KOG3626|consen 488 SSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNK 567 (735)
T ss_pred CCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeecccccccccc
Confidence 0 0 0 0000 00
Q ss_pred -------------c----hhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHH-HHHhHHHHHHHHHH
Q 037870 375 -------------D----SFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDS-IGSLTSKWGGGIVL 436 (511)
Q Consensus 375 -------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~-lg~~~g~~l~g~l~ 436 (511)
. ...++...++..+..+...+|.+.++.+.+|+++|..+.|+..++.. +|..-+|.+.|++.
T Consensus 568 ~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~I 647 (735)
T KOG3626|consen 568 NGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVI 647 (735)
T ss_pred CCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhH
Confidence 0 01223333445556666667777788899999999999999987766 66677999999999
Q ss_pred HH
Q 037870 437 HL 438 (511)
Q Consensus 437 ~~ 438 (511)
|.
T Consensus 648 D~ 649 (735)
T KOG3626|consen 648 DT 649 (735)
T ss_pred hh
Confidence 86
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=120.83 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=135.6
Q ss_pred HHhccCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCc
Q 037870 50 LSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRR 128 (511)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr 128 (511)
....++.+.+|.+.+.+.+..-..+ -...|.|.|+.|+.|.|..+.++..+++-++... ..++|++|||. ++.||.
T Consensus 245 ~~YVL~Nk~iW~la~a~vfvYivR~-gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl--fkgrR~ 321 (448)
T COG2271 245 VKYVLKNKLIWLLALANVFVYVVRY-GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL--FKGRRG 321 (448)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cccccc
Confidence 3444566677778777755555444 4477999999999999999999999999998888 77899999997 222777
Q ss_pred hHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHH-HHHHH
Q 037870 129 PYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAA-GSLIG 207 (511)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg 207 (511)
|.-++..+...++.+...++++.+..+..++.+..|+..-...........|..++ +..|++.|+...+..+ |...+
T Consensus 322 p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK--~AaGtA~Gf~Glf~Yl~Ga~~a 399 (448)
T COG2271 322 PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK--KAAGTATGFVGLFAYLIGAALA 399 (448)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH--hhccchhchhhhHHHHhhHHhc
Confidence 77777788888888888888876554455555555555444444555555777744 5589999988888887 88888
Q ss_pred HHHHHHhhccCChhhHHHHhhhHHHHH
Q 037870 208 YAVSGFSVNHLGPQGALGVLAIPPVLL 234 (511)
Q Consensus 208 ~~~~g~l~~~~gw~~~f~~~~~~~~i~ 234 (511)
....|++.|.+||...|.+..+.+++.
T Consensus 400 ~~~~g~i~d~~gW~g~Fi~~~~~a~l~ 426 (448)
T COG2271 400 GLPLGYIADTWGWDGGFIVLSIAALLA 426 (448)
T ss_pred CCcceeeEecCCCcchHHHHHHHHHHH
Confidence 888888889999999998877766663
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-14 Score=142.55 Aligned_cols=360 Identities=13% Similarity=0.074 Sum_probs=2.7
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+.|+...++....+..+-+. |+++..+.|++.+.+-++..+ ..+..++.+|- +|-+++-.+.++.+++.++++
T Consensus 13 ~~q~~~~g~~~~~lttiErR-F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-----hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 13 LFQMMVSGYVNSSLTTIERR-FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-----HRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCcceeeecHHHHHHHHHHHh
Confidence 66777777777777776554 999999999999999999877 77888888882 566678888888888888776
Q ss_pred hcCC------------------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037870 147 LLGK------------------------------------------------LPIAIALACSVGISAGIAIADVVIDACI 178 (511)
Q Consensus 147 ~~~~------------------------------------------------~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 178 (511)
+.+- ..+..++++-++.|+|.....+...+++
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 5330 0123455667788999999999999999
Q ss_pred hhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC---------------------C-hhhHHHHhhhHHHHHHH
Q 037870 179 ARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL---------------------G-PQGALGVLAIPPVLLIV 236 (511)
Q Consensus 179 ~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~---------------------g-w~~~f~~~~~~~~i~~~ 236 (511)
-|.++ ++..+...|+.+....+|+++|..+|+.+...+ | |-.-|++.+++.++..+
T Consensus 167 DDnv~--~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai 244 (539)
T PF03137_consen 167 DDNVS--KKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI 244 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--cccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 88874 344677888999999999999999998875321 1 43445555555555555
Q ss_pred HHhhccccccccc------ch---h-h---hh----h------hhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCc
Q 037870 237 LGFVIYETRSANI------RS---E-K---KK----V------MENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSIST 293 (511)
Q Consensus 237 ~~~~~~e~~~~~~------~~---~-~---~~----~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 293 (511)
..+++|++.+... +. + + ++ . ....++..+..+++++||.+....+...+......++
T Consensus 245 pl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~ 324 (539)
T PF03137_consen 245 PLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGF 324 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 5556664432220 00 0 0 00 0 0112233345677788887766655444433333333
Q ss_pred ccceeeeeecCCCCCCCChhHHHHHH-HHHHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHhhhh--hHHHhh---
Q 037870 294 HEGQFYWYTDPKAGPAFSQEFVGLIY-ALGAVASMIGVLIYHKTLKDYP--LRNLLFSAQLLYGISGML--DLIFIL--- 365 (511)
Q Consensus 294 ~~~~~~~~~~~~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~~~l~~r~~--~~~~l~~~~~~~~~~~~~--~~~~~~--- 365 (511)
.+..+-|.... ++.+++...++. .+...+..+|.+++|.+.+|++ .|+......++..+..+. ..++..
T Consensus 325 ~tF~pKylE~Q---F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~ 401 (539)
T PF03137_consen 325 ATFLPKYLESQ---FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPN 401 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCC
Confidence 33334333333 788888888776 4555577788888899888875 344444433333322222 111100
Q ss_pred --------hcc------c-------------------ccCC---C---chhhhhHHHHHHHHHHHhhHhHHHHHHhhcCC
Q 037870 366 --------RWN------L-------------------ALGI---P---DSFFVITEQCVSHIISKIRWIPMIVLSTRLCP 406 (511)
Q Consensus 366 --------~~~------~-------------------~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 406 (511)
..+ . ..+. . ....+++..++..+..++..+|......+.+|
T Consensus 402 ~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~ 481 (539)
T PF03137_consen 402 PPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVP 481 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCC
Confidence 000 0 0000 0 11122233334455666777788878889999
Q ss_pred CcchHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Q 037870 407 IGIEGTFFALLMCIDS-IGSLTSKWGGGIVLHL 438 (511)
Q Consensus 407 ~~~~g~~~gl~~~~~~-lg~~~g~~l~g~l~~~ 438 (511)
+++|+.+.|+...+.. +|..-||.+.|.+.|.
T Consensus 482 ~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 482 PEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ---------------------------------
T ss_pred hhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 9999999999987766 5667799999999885
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-11 Score=121.70 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=101.5
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHH--HHHhcCChhH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSAL--MFSLLGKLPI 153 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~--~~~~~~~~~~ 153 (511)
...++|.|+++++|.|..+.++..+...++..+ .+++|+++||+ +||+.+........++.. .....++.
T Consensus 277 ~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~-- 349 (467)
T PRK09556 277 IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-----NGRRALVACIALALIIFTLGVYQHATSE-- 349 (467)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCchHHHHHHHHHHHHHHHHHHhcCcH--
Confidence 466889999888999999999998888888777 89999999997 344444433322222222 22222322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHH-HHHHHHHHHHHhhc------------cCCh
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAA-GSLIGYAVSGFSVN------------HLGP 220 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~~~g~l~~------------~~gw 220 (511)
....+.+++.++..............|.. +++.||++.|+.+...++ |..++|.+.|++.+ ..||
T Consensus 350 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~ 427 (467)
T PRK09556 350 YMYLASLFALGFLVFGPQLLIGVAAVGFV--PKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGW 427 (467)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccCh
Confidence 22333344444332222222224445666 346799999999988886 77999999999999 6789
Q ss_pred hhHHHHhhhHHHHHHHHHh
Q 037870 221 QGALGVLAIPPVLLIVLGF 239 (511)
Q Consensus 221 ~~~f~~~~~~~~i~~~~~~ 239 (511)
+..|++.++..++..+..+
T Consensus 428 ~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 428 AGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888666666444333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=116.74 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=100.1
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
....++|.++++++|.+..+.+...+...++..+ .++.|+++||+.+ .+||+......+...+........+.....
T Consensus 261 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T PRK11663 261 AINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFN--GNRGPMNLIFAAGILLSVGSLWLMPFASYV 338 (434)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc--CCccHHHHHHHHHHHHHHHHHHHcccccHH
Confidence 3455788898777999999999998888888777 8889999999721 123333222211111111111111221221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLL 234 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~ 234 (511)
......+..+++.............|.. ++++|++..|+.+...++|..++|.+.|++.++.||+..|++.++..++.
T Consensus 339 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~ 416 (434)
T PRK11663 339 MQAACFFTIGFFVFGPQMLIGMAAAECS--HKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS 416 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcc--cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1222222223221111111223345554 34679999999999999999999999999999999999999988887775
Q ss_pred HHHH
Q 037870 235 IVLG 238 (511)
Q Consensus 235 ~~~~ 238 (511)
.+..
T Consensus 417 ~~~~ 420 (434)
T PRK11663 417 ALLL 420 (434)
T ss_pred HHHH
Confidence 4433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-11 Score=117.04 Aligned_cols=161 Identities=14% Similarity=0.183 Sum_probs=118.5
Q ss_pred hhhhhhhhcccCCC--------hHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 037870 79 VVTDYYWKDVQKVQ--------PSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLG 149 (511)
Q Consensus 79 ~~~~~~~~~~~g~s--------~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~ 149 (511)
...+.++.+ .|.+ ....+.+.++..+...+ +++.|+++||+ +||+++..+.++..+...++....
T Consensus 229 ~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-----g~r~~l~~~~~~~~v~~~l~~~~~ 302 (418)
T TIGR00889 229 IFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-----GIKKVMLLSLVAWALRFGFFAYGD 302 (418)
T ss_pred HhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcC
Confidence 344666555 5544 35668888887777666 88899999996 678888888888888776666643
Q ss_pred C-h-hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHH-HHHHHHHHHHHHHHHHhhcc------CCh
Q 037870 150 K-L-PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCG-FCSAAGSLIGYAVSGFSVNH------LGP 220 (511)
Q Consensus 150 ~-~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~~~g~l~~~------~gw 220 (511)
+ . ....+++..++.+++.+...+....++.+..+ +++|++.+++.+ ...++|.++||+++|++.++ +||
T Consensus 303 ~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p--~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~ 380 (418)
T TIGR00889 303 PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVP--VHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW 380 (418)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence 2 2 22334556777788877777777778888774 456999999997 56789999999999999987 469
Q ss_pred hhHHHHhhhHHHH-HHHHHhhccccccc
Q 037870 221 QGALGVLAIPPVL-LIVLGFVIYETRSA 247 (511)
Q Consensus 221 ~~~f~~~~~~~~i-~~~~~~~~~e~~~~ 247 (511)
+.+|.+.++..++ ..+..++++|+.+.
T Consensus 381 ~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 381 QTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 9999988887776 44566677776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.4e-09 Score=99.94 Aligned_cols=238 Identities=14% Similarity=0.117 Sum_probs=136.9
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHH-HHhhc-------cc---ccccccc--h
Q 037870 185 IRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV-LGFVI-------YE---TRSANIR--S 251 (511)
Q Consensus 185 ~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~-~~~~~-------~e---~~~~~~~--~ 251 (511)
++....+..+...-.-.+--+++|++.|.+.+..+.+....+.++..++..+ =.+++ |+ ++..+.+ .
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~ 222 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS 222 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc
Confidence 4455677777777777889999999999999989998888877777776332 12221 21 1111000 0
Q ss_pred hhh----------hhhhh----HHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHH
Q 037870 252 EKK----------KVMEN----VEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGL 317 (511)
Q Consensus 252 ~~~----------~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 317 (511)
++. +..++ .++..++++..+++|.+...+.+.+++.. ...+...+..|... .|+++..+|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~----~G~s~~~igi 297 (432)
T PF06963_consen 223 SDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKS----QGYSPSVIGI 297 (432)
T ss_pred ccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHH----CCCCHHHHHH
Confidence 000 00011 11222334556666655544444444332 22333333333333 4899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCC-ch---hhhhHHHHHHHHHHHhh
Q 037870 318 IYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIP-DS---FFVITEQCVSHIISKIR 393 (511)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 393 (511)
+-..+.+.++.|.++++++.+|+|..+.-.++............ ...+. .+.+ .. ...+.+..+.-++.=..
T Consensus 298 ~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v--~~~~~--~~~~~~~~s~~~l~~gi~~SR~GLW~f 373 (432)
T PF06963_consen 298 FRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCV--VSFWA--PGSPFSSISAYLLLGGIALSRIGLWSF 373 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH--HHHhc--CCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988877776544332111111 11010 0111 11 11111211212111112
Q ss_pred HhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHH
Q 037870 394 WIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWG 431 (511)
Q Consensus 394 ~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l 431 (511)
-....-+++|.+|+++||+.+|+-++..++-..+.-.+
T Consensus 374 DL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 374 DLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 23445677899999999999999999888777665433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-10 Score=115.34 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=97.5
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCch-HHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRP-YFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~-~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
...++|.|++++.|.+..+.+++.+++.++..+ .++.|+++||+. .+||. ..+....+..++.+...+.+.....
T Consensus 272 ~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~---~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 348 (452)
T PRK11273 272 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---RGNRGATGVFFMTLVTIATIVYWLNPAGNPT 348 (452)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCcchHHHHHHHHHHHHHHHHHHhcccChH
Confidence 355889999887899999999888877777766 889999999972 13333 2222222223333322222211211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHH-HHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSL-IGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
......++.+.+..........+..|.. +++.||+..|+.+...++|.. +||.++|++.+++||+..|+++++.+++
T Consensus 349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~ 426 (452)
T PRK11273 349 VDMACMIVIGFLIYGPVMLIGLHALELA--PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 426 (452)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHc--ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHH
Confidence 1222233333322211122233445555 346699999999888888765 5899999999999999999988877666
Q ss_pred HHH
Q 037870 234 LIV 236 (511)
Q Consensus 234 ~~~ 236 (511)
.++
T Consensus 427 ~~~ 429 (452)
T PRK11273 427 AVI 429 (452)
T ss_pred HHH
Confidence 433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=117.22 Aligned_cols=167 Identities=15% Similarity=0.124 Sum_probs=110.5
Q ss_pred cchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHH-HHHHHhcCChh
Q 037870 75 SFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVS-ALMFSLLGKLP 152 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~-~~~~~~~~~~~ 152 (511)
.....++|.++++++|.+..+.++..+...++..+ .++.|+++||+ +||+.+..+.+...+. ........+..
T Consensus 267 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (490)
T PRK10642 267 YMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-----GRRPFVILGSVALFVLAIPAFILINSNV 341 (490)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34456789988777899988888777777777766 88899999996 5677766665433322 22122211112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhhHHHHhhhHH
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL-GPQGALGVLAIPP 231 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~-gw~~~f~~~~~~~ 231 (511)
...++..+++.+++.+........++.+.. +++.|++..+..+....++..++|.+.+++.+.. +|+.+++...+..
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~--p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~ 419 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMF--PTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA 419 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 223444555566655555455566667776 4467999999755556667788999999988765 4777777666666
Q ss_pred HHHHHHHhhcccccccc
Q 037870 232 VLLIVLGFVIYETRSAN 248 (511)
Q Consensus 232 ~i~~~~~~~~~e~~~~~ 248 (511)
++..+..+++||++++.
T Consensus 420 ~i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 420 VIGLITGVTMKETANRP 436 (490)
T ss_pred HHHHHHHHHhccccCCC
Confidence 66555666779987654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=113.95 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=111.5
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
..+.|.++++++|.+..+.+++.+...+...+ .+++|+++||+ +||+.+..+.+...+....+...++... .
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 308 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-----GKRFLMRVAAVAGVCFYAGMLMAHSPAI--L 308 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHHhhHHH--H
Confidence 44678888877999999999887776555555 78999999996 5566666665555544444444444322 3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV 236 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~ 236 (511)
+..+++.+++.+........+..|..+ ++|++++++++...++|..+|+.++|.+.+++||+..|++.+++.++..+
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p---~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~ 385 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMP---GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344555555555544444555566653 45899999998999999999999999999999999999988877777666
Q ss_pred HHhhccc
Q 037870 237 LGFVIYE 243 (511)
Q Consensus 237 ~~~~~~e 243 (511)
..++.||
T Consensus 386 ~~~~~~~ 392 (393)
T PRK15011 386 CLLRIKD 392 (393)
T ss_pred HHHhhcC
Confidence 6666664
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=114.22 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=110.4
Q ss_pred hhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 037870 80 VTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALA 158 (511)
Q Consensus 80 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (511)
..+++.++ +|.+..+.+++.+...+...+ .++.|+++||+ +||+.+..+.++..++.+++.+.++......+.
T Consensus 227 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T TIGR00890 227 LYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-----GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLA 300 (377)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhHHHHHHHHHHHHHHHcccchhHHHHH
Confidence 44555555 899999999888888887777 89999999996 567777777777777777776665433222333
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 159 CSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
..++.+++.+...+....++.|..+ +++|++..++.+....+|..++|.+.|.+.++.||+..|++.+++.++
T Consensus 301 ~~~~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 301 TVALVFFTWGGTISLFPSLVSDIFG--PANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHHHHHHhccchhccHHHHHHHhh--hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 3445555555555555667777763 456999999999999999999999999999999999999888766655
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.8e-11 Score=97.03 Aligned_cols=130 Identities=26% Similarity=0.312 Sum_probs=101.1
Q ss_pred cchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcch
Q 037870 105 LPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSI 183 (511)
Q Consensus 105 l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 183 (511)
++..+ +++.|++.||+ +||+.+..+.....++.+.+...++... ....+++.+++.+...+....++.|..+
T Consensus 9 ~~~~~~~~~~g~~~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 9 LGQLIYSPLSGLLTDRF-----GRKPVLLVGLFIFVLSTAMFALSSNITV--LIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred hHHHHHHhhHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 34444 88899999996 6777777777777787777777665443 4556778888888888888888888874
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHH-HHhhccc
Q 037870 184 EIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV-LGFVIYE 243 (511)
Q Consensus 184 ~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~-~~~~~~e 243 (511)
+ ++|++..+..+....+|..+++.+++.+.+..+|++.+++.++..++..+ ..+..||
T Consensus 82 ~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 82 P--EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred h--hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3 56899999999999999999999999999999999999988777666443 3344443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-08 Score=93.72 Aligned_cols=241 Identities=14% Similarity=0.130 Sum_probs=140.7
Q ss_pred hhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 037870 81 TDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALAC 159 (511)
Q Consensus 81 ~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (511)
+-.+++ ++|++..|++.+....+....+ +++.|.++||+ +||+..+...++..++++. -..+++ ..+++.
T Consensus 57 ~Y~LY~-~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-----Grk~~cl~~cily~~scl~-k~~~~~--~~L~~G 127 (354)
T PF05631_consen 57 LYALYE-SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-----GRKKACLLFCILYSLSCLT-KHSSNY--PVLLLG 127 (354)
T ss_pred hHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHH-Hhcccc--HHHHHH
Confidence 333444 4999999999998888877666 99999999996 5666666666677776654 334543 447889
Q ss_pred HHHHHHHHHHHHHHHhHHHh-hcchh--hhccccchHHHHH-HHHHHHHHHHHHHHHHhhccCC--hhhHHHHhhhHHHH
Q 037870 160 SVGISAGIAIADVVIDACIA-RNSIE--IRALAPDMQSLCG-FCSAAGSLIGYAVSGFSVNHLG--PQGALGVLAIPPVL 233 (511)
Q Consensus 160 ~~l~~~g~~~~~~~~~~~~~-~~~~~--~~~~r~~~~~~~~-~~~~~G~~lg~~~~g~l~~~~g--w~~~f~~~~~~~~i 233 (511)
|++.|++.+....+.++... |..++ +++..+...+... ...++-.+++..++-++.+..+ ...+|....++.++
T Consensus 128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~ 207 (354)
T PF05631_consen 128 RVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAV 207 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 99999999988888777663 33211 1111222222222 1223334555555656666554 47888877666666
Q ss_pred HHH-HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCCh
Q 037870 234 LIV-LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQ 312 (511)
Q Consensus 234 ~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 312 (511)
..+ +...-+|...+..+. .+..++.+ +..+.+.+||+++..-+...+.-...+ ...+.|.+... .+-..
T Consensus 208 ~~~~I~~~W~ENyg~~~~~--~~~~~~~~---~a~~~i~~d~ril~LG~~qslFE~smy---~FVflWtPaL~--~~~~~ 277 (354)
T PF05631_consen 208 AAVLILKTWPENYGDTSSS--SSLSGSFR---EAWRAILSDPRILLLGLIQSLFEGSMY---LFVFLWTPALD--PDDEE 277 (354)
T ss_pred HHHHHHhcccccCCCcccc--cchHHHHH---HHHHHHHcCchhHHHHHHHHHHHHHHH---Hheeeeeceec--CCCCC
Confidence 433 333345543322111 11111122 234456667887766554433332222 22334444432 01112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037870 313 EFVGLIYALGAVASMIGVLIYHKTLKDY 340 (511)
Q Consensus 313 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 340 (511)
.-.|+++....++.++|+.+..++..+.
T Consensus 278 ~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 278 LPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2478899899999999999997766543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-10 Score=110.45 Aligned_cols=160 Identities=13% Similarity=0.151 Sum_probs=120.6
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
..+.|.+.++.+|.++.+.|++.+...++..+ .++.|++.||. ++++.+..+.+..+++.++..+.++.. ..
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~ 315 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-----RPGLLMLLSTLGSFLAVGLFGLMPMWI--LA 315 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-----CcchHHHHHHHHHHHHHHHHHccchHH--HH
Confidence 44678888877899999999999888888777 78889999983 555566666666677776666666433 23
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH-HH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL-LI 235 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i-~~ 235 (511)
.+..++.+++.+...+...+++.+..+ ++.|++..++++...++|..+|+.+.|.+.+.+|++..+++.++..++ ..
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 393 (417)
T PRK10489 316 VLCLALFGYLSAISSLLQYTLLQTQTP--DEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV 393 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 445566677777666666677777764 355899999999999999999999999999999999998887776665 44
Q ss_pred HHHhhcccccc
Q 037870 236 VLGFVIYETRS 246 (511)
Q Consensus 236 ~~~~~~~e~~~ 246 (511)
+....++|.+.
T Consensus 394 ~~~~~~~~~~~ 404 (417)
T PRK10489 394 LLLLVLGELRR 404 (417)
T ss_pred HHHHhcccccc
Confidence 45556666544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.7e-10 Score=110.24 Aligned_cols=155 Identities=11% Similarity=0.055 Sum_probs=110.9
Q ss_pred hhhhhhcc---cCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 81 TDYYWKDV---QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 81 ~~~~~~~~---~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
.|.++.+. .+.+..+.|++.++..+...+ .+++|+++||+ +||+.+..+.++..+...++++.++... +
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~l~~~~~~l~~~~~~~~~--~ 318 (420)
T PRK09528 246 FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-----GAKNALLLAGTIMAVRIIGSGFATGPLE--V 318 (420)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcchhhHHHHHHHHHHHHHHHhcccHHH--H
Confidence 45554432 367778889988888877666 88999999996 5666777777777777777777776443 4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHH-HHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSL-CGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLI 235 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~ 235 (511)
+...++.+++.+...+....++.+..+ ++.+++..+. ++....+|.++++.++|++.+.+||+..|.+.++..++..
T Consensus 319 ~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~ 396 (420)
T PRK09528 319 SILKLLHAFEVPFLLVGVFKYITLNFD--VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFT 396 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--ccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 455666777766665555566666653 3456666544 5677889999999999999999999999999888776644
Q ss_pred -HHHhhcccc
Q 037870 236 -VLGFVIYET 244 (511)
Q Consensus 236 -~~~~~~~e~ 244 (511)
+..+..+++
T Consensus 397 ~~~~~~~~~~ 406 (420)
T PRK09528 397 LISVFTLSGD 406 (420)
T ss_pred HHHHHHhcCC
Confidence 344444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=107.97 Aligned_cols=156 Identities=14% Similarity=0.147 Sum_probs=104.1
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcC---Chh
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLG---KLP 152 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~---~~~ 152 (511)
...+.|.++++ +|.+..+.+++.+...++..+ .++.|+++||++ +||+....+.+...++...+.+.+ ...
T Consensus 241 ~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~----~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 315 (402)
T TIGR00897 241 FAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLG----WMNTVRWFGGVGCGIFTLALYYIPQHFGHS 315 (402)
T ss_pred HHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 34577888866 899999999888887777777 899999999962 444433333333333322222211 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHH
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPV 232 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~ 232 (511)
........++.+++.+...+ ......+. +|++|++..|+.+...++|..++|.++|.+.+.+||+.+|++.++..+
T Consensus 316 ~~~~~~~~~~~G~~~~~~~~-~~~~~~~~---~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~ 391 (402)
T TIGR00897 316 FAVALIIAIALGIFLAGYVP-LAAVFPTL---APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYV 391 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhh---CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 22233444555555554333 33444444 234699999999999999999999999999999999999999988877
Q ss_pred HHHHHHhhc
Q 037870 233 LLIVLGFVI 241 (511)
Q Consensus 233 i~~~~~~~~ 241 (511)
+..+...++
T Consensus 392 i~~~~~~~~ 400 (402)
T TIGR00897 392 VSAFLTAFI 400 (402)
T ss_pred HHHHHHHHh
Confidence 755444443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.9e-10 Score=109.55 Aligned_cols=131 Identities=9% Similarity=0.019 Sum_probs=97.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|+|+.++|++.+...++..++.++.|++.||+|+|+.+..+.+...+..+....... ......++.+..+....+.+
T Consensus 46 lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~r~l~G 123 (392)
T PRK12382 46 LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAI--LPVSAPFKFALLVVGRLILG 123 (392)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhc--cccchhHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999988876655443222111110 00000122233444455666
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
...+...+.....+.+..|+++|++++|..+...++|..+||.+++.+.+.+|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 124 FGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred HHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66666666666778899999999999999999999999999999999887655
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=103.18 Aligned_cols=148 Identities=21% Similarity=0.282 Sum_probs=121.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
+++|.|....|.+.+.+.++..++.++...+.+|++||+++.....+++++.+...+ -|++...+..-++
T Consensus 41 ~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al----------Ap~f~~Ll~aR~~ 110 (394)
T COG2814 41 ADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL----------APSFAVLLLARAL 110 (394)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH----------hccHHHHHHHHHH
Confidence 448999999999999999999999999999999999999999987777765443221 2455566667778
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLG 465 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (511)
.++..+..+.....+..+++|+++|+++.|+..+-..++..+|..++.++.|.+|++ ..|.+...+.++..+
T Consensus 111 ~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR--------~~F~~ia~l~ll~~~ 182 (394)
T COG2814 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR--------ATFLAIAVLALLALL 182 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH--------HHHHHHHHHHHHHHH
Confidence 888888888888899999999999999999999999999999999999999999865 334444455555554
Q ss_pred HHh-hcC
Q 037870 466 LIF-LVP 471 (511)
Q Consensus 466 ~~~-~~~ 471 (511)
..+ .+|
T Consensus 183 ~~~~~lP 189 (394)
T COG2814 183 LLWKLLP 189 (394)
T ss_pred HHHHhCC
Confidence 444 777
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.6e-10 Score=108.15 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=130.9
Q ss_pred ccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCch-HHHHHHHHHHHHHHHHHh
Q 037870 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRP-YFVIAGVAGCVSALMFSL 147 (511)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~-~l~~~~~~~~~~~~~~~~ 147 (511)
............|.+.++.+|.+..+.++..+...++..+ .+++|+++||+ +||+ .+..+..+..++.+.+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 187 LSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-----GRRRLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334445566778888876699999999999998888777 88999999996 5666 788888888888888887
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHh
Q 037870 148 LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVL 227 (511)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~ 227 (511)
.++.. ......++.+++.+...+....++.|..++ ++|++..+..+...++|..+++.+.|.+.+..+|+..+++.
T Consensus 262 ~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~ 337 (352)
T cd06174 262 APSLA--LLLVALLLLGFGLGFAFPALLTLASELAPP--EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337 (352)
T ss_pred hccHH--HHHHHHHHHHHHHhccchhHHHHHHhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 77533 345667778888888888888888888743 66999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHh
Q 037870 228 AIPPVLLIVLGF 239 (511)
Q Consensus 228 ~~~~~i~~~~~~ 239 (511)
+++.++..+..+
T Consensus 338 ~~~~~i~~i~~~ 349 (352)
T cd06174 338 AALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHhe
Confidence 888877554443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-10 Score=110.13 Aligned_cols=156 Identities=12% Similarity=0.103 Sum_probs=111.2
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAI 155 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (511)
...++|.|+++++|.|..+.+++.+.+.++..+ .++.|+++||+ +||+.+.....+..+...+....++..+
T Consensus 224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 296 (394)
T PRK03699 224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-----DLQRILTVLAGLALVLMYLFVNTDDPSH-- 296 (394)
T ss_pred HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-----chhhHHHHHHHHHHHHHHHHHHcCCchH--
Confidence 356789999887999999999999988888777 88899999996 4556666666555555555555555433
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHH
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLI 235 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~ 235 (511)
.....++.+++.+...+...+...+..+ +++++..+.......+|..++|.+.|++.+..|++..+++.++..++..
T Consensus 297 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (394)
T PRK03699 297 LLYAILGLGFFSSAIYTTIITLGSQQTK---VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVF 373 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHH
Confidence 2333445555555444444445555432 3356667888888899999999999999999999999998887777654
Q ss_pred HHHhhcc
Q 037870 236 VLGFVIY 242 (511)
Q Consensus 236 ~~~~~~~ 242 (511)
+.+...+
T Consensus 374 ~~~~~~~ 380 (394)
T PRK03699 374 VMCILLG 380 (394)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-10 Score=108.08 Aligned_cols=156 Identities=12% Similarity=0.034 Sum_probs=112.1
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
....|.++++++|.++.+.+++.+........ .++.|+++||+ +||+.+..+.+...+......+.++.. ..
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 291 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-----GKRRLMLLAALAGVAFYTGLAADNSLW--AL 291 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 34567777777999999999887765544444 78899999996 566666666655555544444444322 23
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV 236 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~ 236 (511)
....++.+++.+...+....+..|..+ +++++..++++...++|..+||.++|.+.+..||+..|++.++..++..+
T Consensus 292 ~~~~~~~g~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 368 (375)
T TIGR00899 292 LMLQLLNAIFIGILAGIGMLYFQDLMP---GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALF 368 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 445566677766666666666677653 34678999999999999999999999999999999999998887777555
Q ss_pred HHhhccc
Q 037870 237 LGFVIYE 243 (511)
Q Consensus 237 ~~~~~~e 243 (511)
..++++|
T Consensus 369 ~~~~~~~ 375 (375)
T TIGR00899 369 CLLLIKD 375 (375)
T ss_pred HHheecC
Confidence 5555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.8e-10 Score=109.50 Aligned_cols=160 Identities=18% Similarity=0.088 Sum_probs=104.4
Q ss_pred ccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHH---HHHH
Q 037870 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVS---ALMF 145 (511)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~---~~~~ 145 (511)
..........+.|.++++++|.+..+.+++.+...+...+ .++.|+++||++ +||+.+........++ ....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 302 (399)
T TIGR00893 227 VNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLL----RRGKSLVFARKTAIIAGLVLSLL 302 (399)
T ss_pred HHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh----hcccchhHHHHHHHHHHHHHHHH
Confidence 3334445566788888887999999999998888887766 889999999973 3332121111111111 1111
Q ss_pred HhcCC-h-hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhh
Q 037870 146 SLLGK-L-PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-PQG 222 (511)
Q Consensus 146 ~~~~~-~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-w~~ 222 (511)
.+..+ . .....+....+...+.+ ..+....+..|..+ +++|++..++.+...++|..++|.+.|.+.+..| |+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~ 379 (399)
T TIGR00893 303 MFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAP--GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAG 379 (399)
T ss_pred HHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcC--hhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhH
Confidence 11111 1 11112222233333333 45666777788773 4569999999999999999999999999999998 999
Q ss_pred HHHHhhhHHHHHHH
Q 037870 223 ALGVLAIPPVLLIV 236 (511)
Q Consensus 223 ~f~~~~~~~~i~~~ 236 (511)
.|++.++..++..+
T Consensus 380 ~~~~~~~~~~~~~~ 393 (399)
T TIGR00893 380 ALMVVAALALIGAL 393 (399)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888777666433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=107.95 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=106.3
Q ss_pred hhhhhhhhhcccCCCh---HHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhH
Q 037870 78 KVVTDYYWKDVQKVQP---SVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPI 153 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~---~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (511)
....+.|..+..+... ...+.+.++..++..+ .+++|+++||+ +||+.+..+.....++.+...+.++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-----GPEKILITALIFSVLLLIPMSFVQTPL- 312 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHhccHH-
Confidence 3455666665333221 1234555555555555 88899999996 566677777776666666666655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
.+.+..++.+++.+...+....++.+.. +++++++.+++.+....+|..+||.++|.+.+..||+..|++.+++.++
T Consensus 313 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~ 389 (408)
T PRK09874 313 -QLGILRFLLGAADGALLPAVQTLLVYNS--SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLF 389 (408)
T ss_pred -HHHHHHHHHHhhhHhhHHHHHHHHHHhC--CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 2445566677777777666666666655 3456899999999999999999999999999999999999999888777
Q ss_pred HHHHH
Q 037870 234 LIVLG 238 (511)
Q Consensus 234 ~~~~~ 238 (511)
..+..
T Consensus 390 ~~~~~ 394 (408)
T PRK09874 390 NAVYS 394 (408)
T ss_pred HHHHH
Confidence 54433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=107.55 Aligned_cols=120 Identities=8% Similarity=0.039 Sum_probs=88.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|+|..++|++.+...++.+++.+..|++.||+++|+++..+.++..+..+.. .+.. +.+..+....+.+
T Consensus 38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~g 107 (395)
T PRK10054 38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI-PLVN---------NVTLVVLFFALIN 107 (395)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH-HHHh---------HHHHHHHHHHHHH
Confidence 79999999999988888999999999999999999998887765554432221 1111 1122222222333
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
...+...+.......|..|+++|++++|+.+...++|..+||.+++++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344456677899999999999999999999999999999998875
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=109.79 Aligned_cols=188 Identities=14% Similarity=0.103 Sum_probs=133.1
Q ss_pred HHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHH
Q 037870 268 YKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLF 347 (511)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~ 347 (511)
+.-+|+|.++...+...+.+............+... ..-|+..++++.....+..++.++.+|.+.||+++|++++
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~----lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ----LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 345778887777666666555433222222222222 3457888999888888999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhH
Q 037870 348 SAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLT 427 (511)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~ 427 (511)
.+.++..+..+...++. ..+....+.+++..++.+.+.++..+..++.+.+++|+++...++++.+...+++..+
T Consensus 80 ~~~~~~~~~~~~L~~l~-----~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i 154 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLA-----FFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII 154 (524)
T ss_pred HHHHHHHHHHHHHHHHH-----HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc
Confidence 98776654333322221 1123344555566677788888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHhhcCC
Q 037870 428 SKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPK 472 (511)
Q Consensus 428 g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
||.++|.+...+|.. ..+.+.+++.++.+..+...++
T Consensus 155 GPalgG~Lva~~G~~--------~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 155 GPALGGILVAFFGAA--------AAFLINALSFLISILALLRWKP 191 (524)
T ss_pred cchHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHccc
Confidence 999999999887732 3455556665555555544443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=111.35 Aligned_cols=151 Identities=12% Similarity=0.084 Sum_probs=110.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|++..+.|++.+...++..++.++.|++.||+|+|+.+..+.++..+..+.... .++.+..+...++.+
T Consensus 42 ~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~l~G 111 (405)
T TIGR00891 42 FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGF----------APGYITMFIARLVIG 111 (405)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----------hccHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999998876655543322211 122333344455666
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLI 467 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (511)
+..+...+....++.|..|+++|++++|+.+....+|..+++.+++.+.+..+. .+...+.+..+..++.++..
T Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~------~w~~~f~~~~~~~~~~~~~~ 185 (405)
T TIGR00891 112 IGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD------GWRALFFISILPIIFALWLR 185 (405)
T ss_pred hhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------cHHHHHHHHHHHHHHHHHHH
Confidence 666777777788889999999999999999999999999999999998876541 12334444444444444444
Q ss_pred hhcCCCC
Q 037870 468 FLVPKAD 474 (511)
Q Consensus 468 ~~~~~~~ 474 (511)
...|+.+
T Consensus 186 ~~~~~~~ 192 (405)
T TIGR00891 186 KNIPEAE 192 (405)
T ss_pred HhCCCCh
Confidence 4566543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=108.20 Aligned_cols=153 Identities=10% Similarity=-0.026 Sum_probs=108.8
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAI 155 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (511)
...++|.++++ .|.+..+.+.+.+...++..+ .++.|+++||+ +||+.+..+.+...++.....+.++...
T Consensus 239 ~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 310 (406)
T PRK11551 239 LLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-----RPRRVVLLIYAGILASLAALAAAPSFAG-- 310 (406)
T ss_pred HHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhcCcHHH--
Confidence 34467888877 899999999998888887776 88999999996 5666666665555566555555554332
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHhhhHHHHH
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-PQGALGVLAIPPVLL 234 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-w~~~f~~~~~~~~i~ 234 (511)
+.+..++.+++.+...+...++..+.. ++++|++..++.+....+|..+||.++|.+.++.+ |...+++.+...++.
T Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 388 (406)
T PRK11551 311 MLLAGFAAGLFVVGGQSVLYALAPLFY--PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVA 388 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHc--chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHH
Confidence 333445556655555566667777776 34669999999999999999999999999998754 555666555444443
Q ss_pred HHHHh
Q 037870 235 IVLGF 239 (511)
Q Consensus 235 ~~~~~ 239 (511)
.+..+
T Consensus 389 ~~~~~ 393 (406)
T PRK11551 389 ALAAL 393 (406)
T ss_pred HHHHH
Confidence 33333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=108.22 Aligned_cols=155 Identities=10% Similarity=0.090 Sum_probs=111.8
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 037870 79 VVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIAL 157 (511)
Q Consensus 79 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (511)
.+++.++++ .|.+ +.++..+...++..+ .++.|++.||+ +||+.+..+..+..++..++.+.++... .+
T Consensus 237 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 306 (399)
T PRK05122 237 TFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-----GGLRVAIVSLLVEILGLLLLWLAPSPWM--AL 306 (399)
T ss_pred HHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhccHHH--HH
Confidence 345666655 5653 345555666666666 78899999996 5666777777777777777777665433 34
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHHH
Q 037870 158 ACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVL 237 (511)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~~ 237 (511)
...++.+++.+...+.......+.. ++++|++..++++....+|..+++.+.|.+.++.||+..|++.++..++..+.
T Consensus 307 ~~~~l~G~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 384 (399)
T PRK05122 307 IGAALTGFGFSLVFPALGVEAVKRV--PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLAL 384 (399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 5566777777766665556666655 34668999999999999999999999999999999999999988777775554
Q ss_pred Hhhccccc
Q 037870 238 GFVIYETR 245 (511)
Q Consensus 238 ~~~~~e~~ 245 (511)
.+++++++
T Consensus 385 ~~~~~~~~ 392 (399)
T PRK05122 385 TWLLYRRA 392 (399)
T ss_pred HHHhcccc
Confidence 44455433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-09 Score=106.43 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=100.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
++|+++++.|+......++..++.++.|++.||+|+|+.+..+.++..+..+... . .++.+..+....+.
T Consensus 49 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~-~---------~~~~~~l~~~r~l~ 118 (394)
T PRK10213 49 DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS-F---------ANSFSLLLIGRACL 118 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH-H---------HChHHHHHHHHHHH
Confidence 3799999999998888999999999999999999999999988777665332221 1 12333444445566
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
++..+...+....++.|.+|+++|+.++++.....++|..++|.+++.+.+.+|+
T Consensus 119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw 173 (394)
T PRK10213 119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW 173 (394)
T ss_pred HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 7777777777788889999999999999999999999999999999999887653
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-09 Score=106.03 Aligned_cols=118 Identities=13% Similarity=0.003 Sum_probs=95.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
.|.++.+.+++.....+...+..++.|++.||+++|+++..+.++..+..+... ... +. +...++.+
T Consensus 33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~-~~~---------~~---~~~r~l~G 99 (393)
T PRK11195 33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML-FGI---------HP---LLAYGLVG 99 (393)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH-HHH---------HH---HHHHHHHH
Confidence 577888899998999999999999999999999999999998776655433221 111 11 12234567
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
+..+...+...+++.|.+|++++++++|+.+...+++..+||.++|.+.+.
T Consensus 100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788889999999999999999999999999999999999999885
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-09 Score=106.18 Aligned_cols=147 Identities=12% Similarity=0.002 Sum_probs=103.2
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHH-HHhcCChhHHHH
Q 037870 79 VVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALM-FSLLGKLPIAIA 156 (511)
Q Consensus 79 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 156 (511)
..+++++++++|.+..+.+++.+...++..+ +++.|+++||+ +||.. ..+..+..++... ....++.. ..
T Consensus 226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~-~~~~~~~~~~~~~l~~~~~~~~--~~ 297 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-----PSGFL-LIAIALLLVCLLLLLPAANSEW--HL 297 (390)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-----chhHH-HHHHHHHHHHHHHHHHHhchHH--HH
Confidence 3566677776899999999998888777766 88899999995 45544 3343333333333 23344322 23
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIV 236 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~ 236 (511)
+...++.+++.....+...+.+.+.. +++|++++++++....+|..+||.++|.+.+++|++..|++.+++.++..+
T Consensus 298 ~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~ 374 (390)
T PRK03545 298 SVLSIFWGIAIMCIGLAMQVKVLKLA---PDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALV 374 (390)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence 44455556665544444555555543 346788999999999999999999999999999999999998877776433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.8e-08 Score=91.23 Aligned_cols=348 Identities=10% Similarity=0.052 Sum_probs=190.4
Q ss_pred CchhHHHHHHHHhhcccccccchhhhhhhhhhcc-cCCChHHHHHHHHHhhc---chhh-hhHHHhhhcccccCCCCCch
Q 037870 55 NSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDV-QKVQPSVVQIYIGLCYL---PSVM-KPIWGLFTDAFPIKGYHRRP 129 (511)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~l---~~~~-~~~~G~l~D~~~~~g~~Rr~ 129 (511)
+|+....+...|||...+. + .-+.+.+|+.+. .|++..|+. .-++-+ .+.. -.+...+.|.. |.||
T Consensus 2 ~w~~~~~llc~~gf~~~fr-P-sEPfl~~yL~~~~kn~T~~qv~--~~i~Pv~tYSyl~~l~~vflltd~l-----~Ykp 72 (412)
T PF01770_consen 2 SWKKITLLLCLFGFFKEFR-P-SEPFLTPYLTGPDKNFTEEQVN--NEIYPVWTYSYLAFLLPVFLLTDYL-----RYKP 72 (412)
T ss_pred CchHHHHHHHHHHHHHhcC-C-CCccchHHHcCCccCCCHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHh-----hhhH
Confidence 3555566777777776664 2 244555666654 899998875 122222 1223 45678999996 7899
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHH
Q 037870 130 YFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYA 209 (511)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~ 209 (511)
+++++.+...+...++-+.++... +-+.-+.-|++.+. .++..+++-...+ +++..++.+.......+|..++..
T Consensus 73 viil~~~~~i~t~~lll~~~sv~~--mq~~q~~yg~~~a~-evay~sYiys~v~--~~~yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 73 VIILQALSYIITWLLLLFGTSVLA--MQLMQFFYGLATAA-EVAYYSYIYSVVD--KEHYQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHCcHHH--HHHHHHHHHHHHHH-HHHHHHHheeecC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888777775443 22223333444433 4455566644443 344556677777888888888888
Q ss_pred HHHHhhc--cCChhhHHHHhhhHHHHHHHHHhhccccccc----cc----------chh------hh-------------
Q 037870 210 VSGFSVN--HLGPQGALGVLAIPPVLLIVLGFVIYETRSA----NI----------RSE------KK------------- 254 (511)
Q Consensus 210 ~~g~l~~--~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~----~~----------~~~------~~------------- 254 (511)
+|-.++. +.+++..+++......+..+..+++|..++. +. +.+ ++
T Consensus 148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (412)
T PF01770_consen 148 LGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESS 227 (412)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccc
Confidence 8876655 3456666666554444445555666643210 00 000 00
Q ss_pred hhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcc-cceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 037870 255 KVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTH-EGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIY 333 (511)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 333 (511)
......+...+++++..++|.++...+...+......... .....|....+ .+-.....|.+-....+.+.++.+..
T Consensus 228 ~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~--~~~~~vYNG~VeA~~tllgA~~al~~ 305 (412)
T PF01770_consen 228 SRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPP--SDNESVYNGAVEAASTLLGAIAALLA 305 (412)
T ss_pred hHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCcccchHHHHHHHHHHHHHHHHH
Confidence 0001122344566777788988777765544443322211 11222322211 12233445666667777777788888
Q ss_pred HHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHH
Q 037870 334 HKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTF 413 (511)
Q Consensus 334 ~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 413 (511)
|++..++.+..-+.++.+....++++ +++.. ..+.+...+..++....+.+.......-++....++.-|.+
T Consensus 306 g~v~~~w~~~~~l~l~~~S~l~a~~L-~lm~~-------t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLV 377 (412)
T PF01770_consen 306 GYVKVNWDRWGELALGVFSLLQAGLL-FLMSF-------TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALV 377 (412)
T ss_pred hHhhcchHHHHHHHHHHHHHHHHHHH-HHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeee
Confidence 88866666544444433322222111 11211 12333444444444545555444444445555666777788
Q ss_pred HHHHHHHHHHHHh
Q 037870 414 FALLMCIDSIGSL 426 (511)
Q Consensus 414 ~gl~~~~~~lg~~ 426 (511)
+|+.+++..+-..
T Consensus 378 FGiNtf~Al~LQt 390 (412)
T PF01770_consen 378 FGINTFVALVLQT 390 (412)
T ss_pred eeeHHHHHHHHHH
Confidence 7776655444333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=106.14 Aligned_cols=129 Identities=15% Similarity=0.079 Sum_probs=100.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
.+.+..+.|++.....++..++.++.|++.||+|+|+.+..+.++..+..+....... ....+.+..+....+.+
T Consensus 29 ~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~g 103 (365)
T TIGR00900 29 GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL-----LGGLNIWQVYVLAGILA 103 (365)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH-----cCCCcHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999998886655543332221110 01113334444455667
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
+..+...++..+++.|..|+++|++.+|+.+...++|..+|+.+++.+.+..|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 104 IAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 777777788888999999999999999999999999999999999999887653
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-10 Score=113.42 Aligned_cols=125 Identities=14% Similarity=0.228 Sum_probs=97.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
++|++..+.|++.....++.+++.++.+++.||+++|+.+..+.++..+..+... . .++.+..+....+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~ 115 (398)
T TIGR00895 46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCA---L-------ATNVTQLLILRFLA 115 (398)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH---H-------ccchHHHHHHHHHH
Confidence 3789999999999999999999999999999999999998887665554322211 1 11223333344556
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
+++.+...+....++.|..|+++|++.+|+.+...++|..+++.+++.+.+..|+
T Consensus 116 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 116 GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred hcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 6666677777888899999999999999999999999999999999999886654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=111.52 Aligned_cols=149 Identities=11% Similarity=-0.007 Sum_probs=103.2
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
..++|.++++++|.+..+.+++.+...++..+ .++.|+++||+ +||+.++.+.++..+..+......+......
T Consensus 295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (496)
T PRK03893 295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-----GTRKAYVCSLLISQLLIIPVFAIGGANVWVL 369 (496)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 45788898777999999999999998888777 88899999996 5666666666555555444333333232222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
....++.+............++.+..+ +++|++.+++.+....+|..+||.++|.+.+++||+..+...+....+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 370 GLLLFFQQMLGQGISGLLPKLIGGYFD--TEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHHHHHhcccchhhHHHHHhhCC--HHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 222222222222223344556667663 356899999999999999999999999999999999888765544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-10 Score=112.77 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=109.5
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
..+++.|.++ +|.+..+.+++.++..++..+ +|+.|.++||... +.+|+..+..+.+..+++.+++.+.++.+ .+
T Consensus 261 ~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~ 336 (455)
T TIGR00892 261 IIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWI-RPHVQYLFSFALLFNGLTHLLCALAGDYT--GL 336 (455)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHHHHHHHHHhchHH--HH
Confidence 4467778776 899999999999988887766 8999999998421 10222223333344344444555555533 24
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhhHHHHhhhHHHHH
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL-GPQGALGVLAIPPVLL 234 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~-gw~~~f~~~~~~~~i~ 234 (511)
++..++.+++.+...+...+++.+..+ ++++++.+++++...++|..+||.++|.+.+.. +|+..|++.++..++.
T Consensus 337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 337 VIYCIFFGLSFGSVGALLFEVLMDLVG--AQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhh--HHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence 555667778877777777788888774 356899999999999999999999999999887 5999999888766553
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=103.25 Aligned_cols=152 Identities=12% Similarity=0.022 Sum_probs=117.9
Q ss_pred CCCCChhH-HHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 307 GPAFSQEF-VGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 307 ~~g~s~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
++|++.++ .|.+......+..+..+..|.+.||+|.|+++..+.+...+..++.... . ....+.+.-++
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-~---------Sl~~L~i~R~l 124 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-T---------SVWHMQLMEVF 124 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHH
Confidence 37999999 9999999999999999999999999999999998877776543332221 1 12233445567
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLG 465 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (511)
.++..+..+ ....++.+.+|+++|+++.|..++...+|..+++.+++++ ..+|+ ..+..+..+......++++
T Consensus 125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gW-----r~y~~Ln~Isl~s~~~a~~ 197 (511)
T TIGR00806 125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGW-----ISYSTLNIISLVFMTFSVF 197 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCc-----hhHHHHHHHHHHHHHHHHH
Confidence 777777777 8888999999999999999999999999999999999994 34443 3344556666666777777
Q ss_pred HHhhcCCCCc
Q 037870 466 LIFLVPKADQ 475 (511)
Q Consensus 466 ~~~~~~~~~~ 475 (511)
+.+++|..++
T Consensus 198 ~a~~LP~~~~ 207 (511)
T TIGR00806 198 LALFLKRPKR 207 (511)
T ss_pred HHHhCCCCch
Confidence 7788886555
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-09 Score=105.30 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=104.5
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 037870 79 VVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIAL 157 (511)
Q Consensus 79 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (511)
.++|.++++ .|.+..+.|++.+...+...+ +++.|+++||+ +||+.+..+..+..++..... +... ..
T Consensus 221 ~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~l~~~~~~~~~~~~~~~--~~~~---~~ 289 (381)
T PRK03633 221 GLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-----GRLLVLRVQVFVVILGSIAML--SQAA---MA 289 (381)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-----CcHHHHHHHHHHHHHHHHHHh--hhHH---HH
Confidence 457888776 799999999988888777766 88899999996 677777766666655544332 2111 12
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHHH
Q 037870 158 ACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVL 237 (511)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~~ 237 (511)
...++.+++.....+...+.+.|..++ ++++...+.++...++|..+||.++|++.+++||++.|.+.+...++..+.
T Consensus 290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 290 PALFILGAAGFTLYPVAMAWACEKVEH--HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 233444555455556666666666633 345666777778899999999999999999999999999887777655444
Q ss_pred Hh
Q 037870 238 GF 239 (511)
Q Consensus 238 ~~ 239 (511)
.+
T Consensus 368 ~~ 369 (381)
T PRK03633 368 LL 369 (381)
T ss_pred HH
Confidence 33
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-10 Score=112.78 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=127.5
Q ss_pred hhhHHHHHHhccCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccc
Q 037870 43 PFQWLQMLSSQLNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFP 121 (511)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~ 121 (511)
+.+|.+.+.+. .++++.+.. +.......+....+|.|+++.+|++..+.|++.++..+...+ +.+.|.++||..
T Consensus 248 ~vP~~~i~ts~----~vwai~~~~-f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~ 322 (466)
T KOG2532|consen 248 PVPYKAILTSP----PVWAIWISA-FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLT 322 (466)
T ss_pred CCCHHHHHcCH----HHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55674444433 556666666 777777788889999999999999999999999999888766 999999999973
Q ss_pred cC----CCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHH
Q 037870 122 IK----GYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCG 197 (511)
Q Consensus 122 ~~----g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 197 (511)
.+ ..+||..-.++....+++++.+++.++......+.++.+ +.+.......+......+..|+..+.++++.+
T Consensus 323 ~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~---~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~ 399 (466)
T KOG2532|consen 323 FRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTI---AIGLSGFNISGFYKNHQDIAPQHAGFVMGIIN 399 (466)
T ss_pred hccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHH---HHHHcccchhhhHhhhhhccchHHHHHHHHHH
Confidence 21 113444445566666777777777664332112222211 12222222223332222213455788999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CChhhHHHHhhhHHHHHHHHH
Q 037870 198 FCSAAGSLIGYAVSGFSVNH---LGPQGALGVLAIPPVLLIVLG 238 (511)
Q Consensus 198 ~~~~~G~~lg~~~~g~l~~~---~gw~~~f~~~~~~~~i~~~~~ 238 (511)
....+..+++|.+.|.+... ..||.+|++.+++.++..+.+
T Consensus 400 ~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f 443 (466)
T KOG2532|consen 400 FVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF 443 (466)
T ss_pred HHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence 99999999999999999842 379999999988887754433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=111.20 Aligned_cols=156 Identities=10% Similarity=0.103 Sum_probs=116.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|++..+.+++.+...++.+++.+++|++.||+|+|+.+.++.++..+..++.. +. ++.+.+++..++.+
T Consensus 197 ~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~a-fa---------~s~~~llv~R~l~G 266 (742)
T TIGR01299 197 LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSS-FV---------QGYGFFLFCRLLSG 266 (742)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HH---------hhHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999888666554333221 11 12233344455667
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC-----CccchHHHHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRT-----DFTNLWLVILIRNVLRLA 462 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~-----~~~~~~~~~~~~~~~~~~ 462 (511)
++.+...+....++.|.+|++.||+.+++.++...+|..+++.++..+...+|+... ...++..++.+.++..++
T Consensus 267 ~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll 346 (742)
T TIGR01299 267 FGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF 346 (742)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHH
Confidence 777777778888999999999999999999999999999999999888877664321 112344455555555666
Q ss_pred HHHHHhhcCCC
Q 037870 463 TLGLIFLVPKA 473 (511)
Q Consensus 463 ~~~~~~~~~~~ 473 (511)
.++..+++||.
T Consensus 347 ~ll~~~~lPES 357 (742)
T TIGR01299 347 AIGALTFMPES 357 (742)
T ss_pred HHHHHHHcCCC
Confidence 66666677776
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-09 Score=104.43 Aligned_cols=123 Identities=14% Similarity=0.158 Sum_probs=97.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.+..+.|++.....++..++.++.|++.||+++|+.+..+.++..+..+.... .++.+..+...++.+
T Consensus 35 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~g 104 (385)
T TIGR00710 35 LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL----------SNNIETLLVLRFVQA 104 (385)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH----------HccHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999998876655543322111 112233333445666
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
+..+...++...++.|..|+++|++.+|+.+....+|..+++.+++.+.+..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 105 FGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS 157 (385)
T ss_pred cchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66677777778889999999999999999999999999999999999888654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=105.96 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=92.6
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHH-HHHHHHHHHHHHHhcCChhHH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVI-AGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~-~~~~~~~~~~~~~~~~~~~~~ 154 (511)
...+.|.++++++|.+..+.+++.+...++..+ .++.|+++||.. .+||..+.. ......++.......+.....
T Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (379)
T TIGR00881 235 ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF---NGRRGPLAVFFMALIIVSLLVYWLNPAANPL 311 (379)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc---CCcchHHHHHHHHHHHHHHHHHhcCcchhHH
Confidence 455678888877899999999998888887776 889999999852 133322222 222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGAL 224 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f 224 (511)
......++.+............+..|.. ++++|++..++.+....+|..++|.+.|.+.+++||++.|
T Consensus 312 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 312 MDLICLFALGFLVYGPQMLIGVIASELA--PKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhc--CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 2233333344333333333445566666 3466999999999999999999999999999999998764
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-09 Score=104.94 Aligned_cols=161 Identities=12% Similarity=-0.058 Sum_probs=111.5
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
....++|.++.+ +|.+..+.|...+...++..+ .+++|+++||+ +||+.+..+..+..++..++...++....
T Consensus 223 ~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (393)
T PRK09705 223 SLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-----DRRKLLMLALVLQLVGFCGFIWLPLQLPV 296 (393)
T ss_pred HHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 345578888877 899999999999998888777 88999999996 56666666766666665554433332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHhhhHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-PQGALGVLAIPPVL 233 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-w~~~f~~~~~~~~i 233 (511)
.. .++.+++.+...+.......+..+ +++++++..++.+....++..+||.+.|++.++.| |+..|++.++..++
T Consensus 297 -~~--~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (393)
T PRK09705 297 -LW--AMVCGLGLGGAFPLCLLLALDHSV-QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVG 372 (393)
T ss_pred -HH--HHHHHHhccchHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 11 223455554444444444444442 23568999999999999999999999999999886 77888887776666
Q ss_pred HHH-HHhhcccccc
Q 037870 234 LIV-LGFVIYETRS 246 (511)
Q Consensus 234 ~~~-~~~~~~e~~~ 246 (511)
..+ ...+.||++.
T Consensus 373 ~~~~~~~~~~~~~~ 386 (393)
T PRK09705 373 LMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHHhcccccc
Confidence 443 4455565543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-09 Score=106.23 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=99.6
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHH-HHHHHHHHHHHhcCChhHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAG-VAGCVSALMFSLLGKLPIAI 155 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (511)
..++|.++++..|.++.+.++..+...+...+ .++.|+++||++ .+||....... ....++.+.+...+..+...
T Consensus 271 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T TIGR00712 271 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---KGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV 347 (438)
T ss_pred HHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 45789999887899999999988888777666 889999999962 12332221111 11112222222222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHH-HHHHHHHHHHhhccCChhhHHHHhhhHHHH-
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAG-SLIGYAVSGFSVNHLGPQGALGVLAIPPVL- 233 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G-~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i- 233 (511)
.....+..+.+.............+.. ++++|+++.|+.+....+| ..+||.+.|.+.++.||...|++.++..++
T Consensus 348 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~ 425 (438)
T TIGR00712 348 DMICMIVIGFLIYGPVMLIGLHALELA--PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA 425 (438)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhc--ChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHH
Confidence 222222333322111111123344555 3466899999998887776 578999999999999999999887776655
Q ss_pred HHHHHhhccccc
Q 037870 234 LIVLGFVIYETR 245 (511)
Q Consensus 234 ~~~~~~~~~e~~ 245 (511)
.....+..||++
T Consensus 426 ~~~~~~~~~~~~ 437 (438)
T TIGR00712 426 VILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHhhcc
Confidence 444556677765
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-09 Score=106.78 Aligned_cols=157 Identities=14% Similarity=0.071 Sum_probs=109.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
+++|++..++|++.+...++..++.+..|++.||+|+|+++..+.++..+..+.... . ++....+...++
T Consensus 36 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~---------~~~~~l~~~r~l 105 (412)
T TIGR02332 36 KDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF-A---------TGPESLYLLRIL 105 (412)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-h---------cCHHHHHHHHHH
Confidence 347999999999999999999999999999999999999988886666554332211 1 122233334456
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH-HH
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLA-TL 464 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~ 464 (511)
.++..+...+....++.|..|+++||+.+|+++....+|..+++.+++++.+..+.. +..++...+.+.++..++ ..
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--~~~gwr~~f~~~~~~~l~~~~ 183 (412)
T TIGR02332 106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM--ALKGWQWLFLLEGFPSVILGV 183 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CccchhHHHHHHHHHHHHHHH
Confidence 666666666666677899999999999999999999999999999999887531110 111233444444444333 33
Q ss_pred HHHhhcCCCC
Q 037870 465 GLIFLVPKAD 474 (511)
Q Consensus 465 ~~~~~~~~~~ 474 (511)
+..+++||++
T Consensus 184 ~~~~~~~~~p 193 (412)
T TIGR02332 184 MTWFWLDDSP 193 (412)
T ss_pred HHhhccCCCc
Confidence 3334566654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=104.94 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=102.6
Q ss_pred cchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHH-HHH-HHHHhcCCh
Q 037870 75 SFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGC-VSA-LMFSLLGKL 151 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~-~~~-~~~~~~~~~ 151 (511)
......+|.++++++|.+..+.+...+...+...+ .++.|+++||+ +||+.+.....+.. .+. ....+..+.
T Consensus 236 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (394)
T TIGR00883 236 YLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-----GRRPVLIIFTVLAALLAVPLLMALLDSG 310 (394)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455788888777999999999888888777766 89999999996 45555443333322 221 222222211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHH-HHHHHHHHHHHHHHHHHhhccCC-hhhHHHHhhh
Q 037870 152 PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLC-GFCSAAGSLIGYAVSGFSVNHLG-PQGALGVLAI 229 (511)
Q Consensus 152 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~G~~lg~~~~g~l~~~~g-w~~~f~~~~~ 229 (511)
.........++.+++.+...+...+++.|..++ ++|++..++. +.+..+|..++|.++|++.++.| |+..++..++
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 311 SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT--EVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc--cceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 222334445666777767777778888888743 5578888864 45667899999999999999988 8887776554
Q ss_pred HH
Q 037870 230 PP 231 (511)
Q Consensus 230 ~~ 231 (511)
..
T Consensus 389 ~~ 390 (394)
T TIGR00883 389 LA 390 (394)
T ss_pred HH
Confidence 43
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.4e-09 Score=102.69 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=115.9
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAI 155 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (511)
.....|.++++ +|.+..++|++.+...+...+ .++.|++.||+ ++|+.+.++.+.+.+...++++.++.+ .
T Consensus 224 ~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~--~ 295 (382)
T TIGR00902 224 YYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-----SARDLLLISAIACVGRWAIIGAIEAFP--L 295 (382)
T ss_pred HHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-----CHHHHHHHHHHHHHHHHHHHHhHhhHH--H
Confidence 34467888877 999999999988877776666 77889999996 677788889999998888888877644 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHH-HHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHH
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCG-FCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLL 234 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~ 234 (511)
.+...++.++..+...+....++.+. + ++++++.+++++ ....+|..+|+.++|++.+++|+ ..|++.+++.++.
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~--~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-P--GSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-C--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 45567888888888888877777754 3 345788899876 46789999999999999999996 6677777766654
Q ss_pred HH
Q 037870 235 IV 236 (511)
Q Consensus 235 ~~ 236 (511)
.+
T Consensus 372 ~~ 373 (382)
T TIGR00902 372 FF 373 (382)
T ss_pred HH
Confidence 33
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.8e-09 Score=101.99 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=96.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|++..+.|++.+...++..++.++.|++.||+|+|+++..+.++..+..+.. .. .++.+..+...++.+
T Consensus 33 ~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~---~~-------~~~~~~l~~~r~l~G 102 (382)
T PRK10091 33 VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF---TL-------SSSYLMLAIGRLVSG 102 (382)
T ss_pred cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH---HH-------hCcHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999998876666533221 11 123333444445666
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
++.+...+.....+.+..|++++++.+|+......++..+++.+++++.+..|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 155 (382)
T PRK10091 103 FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS 155 (382)
T ss_pred hhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc
Confidence 66666666666778899999999999999999999999999999999887654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=109.81 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=107.5
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh---cCCh
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL---LGKL 151 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~---~~~~ 151 (511)
......|.++++ +|.+..+.++......+...+ .++.|+++||+ +||+.+..+.++.+++.+++++ ....
T Consensus 302 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (481)
T TIGR00879 302 AIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-----GRRPLLLIGAAGMAICLFVLGILGASFVT 375 (481)
T ss_pred ehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 334456666655 899998888887777776666 88899999996 5666676666666666555552 1111
Q ss_pred ------hHHHHHHHHHHHHHHHHH-HHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHH
Q 037870 152 ------PIAIALACSVGISAGIAI-ADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGAL 224 (511)
Q Consensus 152 ------~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f 224 (511)
... .+....+...+.+. ..+....+..|..+ +++|++.+++.+...++|.++++.+.+.+.++.+|++.|
T Consensus 376 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f 452 (481)
T TIGR00879 376 GSSKSSGNV-AIVFILLFIAFFAMGWGPVPWVIVSEIFP--LSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVF 452 (481)
T ss_pred CcccchhHH-HHHHHHHHHHHHHccccCeehhhhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccee
Confidence 111 11111222222221 12333455566663 456899999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHH-HHhhcccccc
Q 037870 225 GVLAIPPVLLIV-LGFVIYETRS 246 (511)
Q Consensus 225 ~~~~~~~~i~~~-~~~~~~e~~~ 246 (511)
++.++++++..+ ..++.||++.
T Consensus 453 ~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 453 IFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred hhHHHHHHHHHHHHheecccCCC
Confidence 998888777544 4455666543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.1e-09 Score=103.30 Aligned_cols=161 Identities=11% Similarity=0.024 Sum_probs=103.0
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh--cCChhH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL--LGKLPI 153 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~--~~~~~~ 153 (511)
...+.|.|+++++|.+......+..+..+...+ .+++|+++||+ +||+.++.+.++..++...+.. ..+...
T Consensus 269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T PRK09952 269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-----GRRRVYITGALIGTLSAFPFFMALEAQSIF 343 (438)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 445778888777899887654444444444344 78899999996 5666666665554444332222 111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHH-HHHHHHHHHHHHHHHhhccC--ChhhHHHHhhhH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGF-CSAAGSLIGYAVSGFSVNHL--GPQGALGVLAIP 230 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~lg~~~~g~l~~~~--gw~~~f~~~~~~ 230 (511)
..++...++.+++.+...+...+++.|..+. +.|++..++.+. +..+|..++|.+.+++.+.. +|+..+...++.
T Consensus 344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~--~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~ 421 (438)
T PRK09952 344 WIVFFSIMLANIAHDMVVCVQQPMFTEMFGA--SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAG 421 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 2223334455666666666677888888743 557777877544 44589999999999998744 488888877777
Q ss_pred HHHHHHHHhhcccc
Q 037870 231 PVLLIVLGFVIYET 244 (511)
Q Consensus 231 ~~i~~~~~~~~~e~ 244 (511)
.++..+..+.++|+
T Consensus 422 ~~i~~v~~~~~~~~ 435 (438)
T PRK09952 422 CLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHcccc
Confidence 76655555566664
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=103.74 Aligned_cols=162 Identities=9% Similarity=0.045 Sum_probs=113.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHH
Q 037870 309 AFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 388 (511)
Q Consensus 309 g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
+.+..+.+++.....++.+++.++.+++.||+|||+.+..+.++..+..+..... . +. ....+....+...++.++
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~-~--~~-~~~~~~~~~~~~r~l~G~ 127 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS-P--GS-SPKSVMATLCFWRFWLGV 127 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-c--Cc-ccchHHHHHHHHHHHHHH
Confidence 4566677888889999999999999999999999999988766666543322211 1 10 000112334455667778
Q ss_pred HHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC----C----------CCc-cchHHHH
Q 037870 389 ISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVT----R----------TDF-TNLWLVI 453 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~----~----------~~~-~~~~~~~ 453 (511)
..+...++...+++|.+|++.||+..++.+....+|..+++.++..+...+... . ... ..+...+
T Consensus 128 ~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~ 207 (502)
T TIGR00887 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI 207 (502)
T ss_pred HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH
Confidence 888888888899999999999999999999999999999999988776533210 0 000 1344555
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 037870 454 LIRNVLRLATLGLIFLVPKAD 474 (511)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~ 474 (511)
.+..+..++.+++..++||..
T Consensus 208 ~~~~ip~~i~~~~~~~lpESp 228 (502)
T TIGR00887 208 GFGAVPALLALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHHHhCCCCH
Confidence 555555566666666788863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-09 Score=105.45 Aligned_cols=124 Identities=9% Similarity=-0.023 Sum_probs=98.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+++++..+.|.+.....++..++.+..|++.||+++|+.+..+.++..+..+....... ......+...++.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~~~ 141 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG--------GGIALVVFCRVIQ 141 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH--------cCchHHHHHHHHH
Confidence 47899999999999999999999999999999999999998886665543322111100 1122233444566
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
++..+...+....++.|..|+++|++++|+.+...++|..+++.+++.+.+.
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~ 193 (465)
T TIGR00894 142 GLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES 193 (465)
T ss_pred HHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777888999999999999999999999999999999999998876
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=103.78 Aligned_cols=159 Identities=16% Similarity=0.058 Sum_probs=105.6
Q ss_pred hhhhhhhhhcccCCChHHHHHHHH-Hhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHH---HHhcCChh
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIG-LCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALM---FSLLGKLP 152 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s-~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~---~~~~~~~~ 152 (511)
..+.++++.+++|.+..+.+++.. ...++..+ .++.|+++||+ +||+.+.++.++.++..+. ++...+ +
T Consensus 242 ~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-----g~~~~l~i~~~l~~l~~l~~~~l~~~~~-~ 315 (491)
T PRK11010 242 MSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-----SLFRALMIFGILQGVSNAGYWLLSITDK-N 315 (491)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence 345666766669999999999875 44556666 88899999996 4455554444433333222 233321 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHH
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPV 232 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~ 232 (511)
...+....++..+..+.......++..+..+ ++.+++.+++.+...++|..++++++|++.+.+||+..|.+.++..+
T Consensus 316 ~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~--~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l 393 (491)
T PRK11010 316 LYSMGAAVFFENLCGGMGTAAFVALLMTLCN--KSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAV 393 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 2222333444444445444555666677764 34568888999999999999999999999999999999998888877
Q ss_pred HHHHHHhhcccc
Q 037870 233 LLIVLGFVIYET 244 (511)
Q Consensus 233 i~~~~~~~~~e~ 244 (511)
+..+....++++
T Consensus 394 ~~l~~~~~~~~~ 405 (491)
T PRK11010 394 PGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHhc
Confidence 755544445543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.1e-09 Score=99.81 Aligned_cols=124 Identities=18% Similarity=0.202 Sum_probs=100.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.+..+.|++.+...++..++.++.|++.||+|+|+.+..+.++..+..+... +. ++.+..+...++.+
T Consensus 27 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~l~g 96 (352)
T PF07690_consen 27 LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-FA---------SNFWLLLIARFLLG 96 (352)
T ss_dssp STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-HH---------CCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-hh---------hhHHHHhhhccccc
Confidence 789999999999999999999999999999999999988888776665422221 11 22334445556777
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
++.+...+....++.|..|+++|++.+|+.+...++|..+++.+++.+.+..++
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~ 150 (352)
T PF07690_consen 97 IGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW 150 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred cccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence 777888888889999999999999999999999999999999999998866553
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=99.52 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=92.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|+|+.+.+++.....++..++.++.|++.||+|+|+.+..+.++..+..+...... ++.+..+...++.+
T Consensus 32 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~g 102 (366)
T TIGR00886 32 LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV---------QSYSVLLLLRLFIG 102 (366)
T ss_pred hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999888766655433221111 02233333334445
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLL 439 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~ 439 (511)
+..+ ...+...++.+..|+++|++.+++.....++|..+++.+++.+.+.+
T Consensus 103 ~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 153 (366)
T TIGR00886 103 IAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153 (366)
T ss_pred Hhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4433 34556778889999999999999999999999999999998887754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=103.38 Aligned_cols=139 Identities=15% Similarity=0.069 Sum_probs=101.6
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcC-ChhH
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLG-KLPI 153 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~-~~~~ 153 (511)
......|.|++..+|.++.+.++......++..+ .+++|+++||+ +||+.+..+.++..+...++.+.+ +.+.
T Consensus 279 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (471)
T PRK10504 279 MLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-----GYRRVLVATTLGLALVSLLFMLVALLGWY 353 (471)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHHHHhccccccH
Confidence 3344678888766899999999888777776655 78999999996 677777777776666666555533 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQ 221 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~ 221 (511)
.......++.+++.+...+....+..+..+ +++++...++.++...+|..+|+.++|.+.+..|+.
T Consensus 354 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 354 YLLPFVLFLQGMVNSTRFSSMNTLTLKDLP--DNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 222334556667777777777777777664 356899999999999999999999999998766653
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=105.05 Aligned_cols=123 Identities=12% Similarity=0.020 Sum_probs=92.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKD-YPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+|++..+.|.+.....++..++.+++|++.|| +|+|+.+..+.++..++.+... + .++....+....+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~-~---------~~~~~~~~~~~~l~ 112 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA-M---------SIYPDLIFYGLGTI 112 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-h---------cccHhHHHHHHHHH
Confidence 68999999999999999999999999999999 8999999988776665432211 1 11111222222344
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcc---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGI---EGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~---~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
+++.+...+....++.+..|+++ |++++++.....++|..+|+.++|++.+.+|
T Consensus 113 g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 113 AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55555556666778888887654 8889999999999999999999999988655
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=101.05 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=94.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
.|+|..++|++.....+...+..++.|++.||+++|+.+..+..+..+..+... . .++.+..+....+.+
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~---~-------~~~~~~l~~~~~l~g 110 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA---I-------AHEPWLLWLSCILSG 110 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH---H-------hccHHHHHHHHHHHH
Confidence 789999999999888888888899999999999999999888666665333221 1 122333333444556
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVL 436 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~ 436 (511)
+..+...++..+.+.+.+|++++++++|+.+...++|..+||.++|.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677788889999999999999999999999999999999998
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-10 Score=107.15 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=95.4
Q ss_pred hhhhhhhcccCCChHHHHHHHHHh-hcchhhhhHHHhhhccc-ccCCCCCchHHHHHHHHHHHHHHHHHhcCChh-----
Q 037870 80 VTDYYWKDVQKVQPSVVQIYIGLC-YLPSVMKPIWGLFTDAF-PIKGYHRRPYFVIAGVAGCVSALMFSLLGKLP----- 152 (511)
Q Consensus 80 ~~~~~~~~~~g~s~~~~g~~~s~~-~l~~~~~~~~G~l~D~~-~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~----- 152 (511)
.+++|+++ +|++....+.+--.. ..|..+||+.|..+||. .++| ||||++..+.+...++.+++.++++..
T Consensus 54 y~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G-RRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 54 YLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG-RRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred cccHHHHH-cCCCcccccccccccccccceecccccccccccccccc-cccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 56788777 899988877665544 34556699999999999 6788 999999999999999988888766432
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhh-ccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037870 153 ----------IAIALACSVGISAGIAIADVVIDACIARNSIEIR-ALAPDMQSLCGFCSAAGSLIGYAVSGFS 214 (511)
Q Consensus 153 ----------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~G~~lg~~~~g~l 214 (511)
....++...+.-+.......+..+++.|....+. ++| +.+++.....+|..+|..+++++
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~--Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR--ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc--cchhHHHHHHhcceeeeeccccc
Confidence 2223333444445555556677888999875432 333 78888888999999998888743
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-08 Score=98.01 Aligned_cols=123 Identities=12% Similarity=0.159 Sum_probs=98.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|+|+.+.+++.+...++..++.++.|++.||+++|+.+..+..+..+..+.... .++.+..+...++.+
T Consensus 21 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~l~g 90 (377)
T PRK11102 21 FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL----------AQTIDQLIYMRFLHG 90 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH----------HccHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999988886665543332211 112233333445666
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
++.+...++...++.|..|+++|++.+++.+....+|..+++.+++.+.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 143 (377)
T PRK11102 91 LAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS 143 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66677777778889999999999999999999999999999999999988655
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=100.52 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=93.9
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
..++|.++++ .|.++.+.+...+...++..+ .+++|+++||+ +||+.+..+.++..+..+.....++......
T Consensus 251 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (426)
T PRK12307 251 FGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-----GLKKTFSIGLLMSFLFIFPLFRIPQDNYLLL 324 (426)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 3467888877 799999999888887777766 88999999996 5666676666665555544443332222111
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHh
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVL 227 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~ 227 (511)
....+..+.+..........++.|..+ ++.|++.+|+.+....+|..+||.+.|++.+++|+....++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~ 393 (426)
T PRK12307 325 GACLFGLMATNVGVGGLVPKFLYDYFP--LEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI 393 (426)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHhCc--HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 111111111111112234455666663 456899999999999999999999999999998876544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-08 Score=97.54 Aligned_cols=147 Identities=10% Similarity=-0.074 Sum_probs=101.7
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcC---ChhHH
Q 037870 79 VVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLG---KLPIA 154 (511)
Q Consensus 79 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~---~~~~~ 154 (511)
...|.++++++|.++.+.++......++..+ .++.|+++||+ +||+.+..+.++..++..+..+.+ +....
T Consensus 236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 310 (406)
T PRK15402 236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-----PLRSLIRMGLWPMVAGLLLAALATVISSHAYL 310 (406)
T ss_pred HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHcccccHH
Confidence 3457777777999999999887766666666 78899999996 566667777666666655554422 21222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
..+...++.++|.+...+......... +++++|+..+..+....+|..+|+.+++.+.+..++....+..++..++
T Consensus 311 ~~~~~~~~~g~g~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 311 WLTAGLSLYAFGIGLANAGLYRLTLFS---SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhh---ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence 344555666777766555444443322 2356899999999999999999999999999988877665555444444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-08 Score=100.17 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=97.9
Q ss_pred hhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 037870 80 VTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALA 158 (511)
Q Consensus 80 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (511)
..+++.++.++ +..+.+++.++..++..+ .+++|+++||+ +||+.+..+.++.+++.+.+.+.++ .....++
T Consensus 244 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 316 (437)
T TIGR00792 244 VQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-----GRKILFAGGILLMVLGYLIFFFAGS-NLPLILV 316 (437)
T ss_pred hhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcch-hHHHHHH
Confidence 34555555455 566677777776677666 88999999996 5677777787777777766666542 2223445
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcchhh-----hccccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 037870 159 CSVGISAGIAIADVVIDACIARNSIEI-----RALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQ 221 (511)
Q Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~ 221 (511)
..++.+++.+...+...+++.|..+.+ ++.+|...++.+....+|..+|+.+.|.+.+..||.
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 317 LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 556677888777777888888776421 345788999999999999999999999998877763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=98.87 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=94.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.+..+.++......++..++.++.|++.||+|+|+.+..+.++..+..+... . .++.+..+....+.+
T Consensus 33 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~---~-------~~~~~~~~~~~~l~g 102 (392)
T PRK10473 33 LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS---L-------AETSSLFLAGRFLQG 102 (392)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH---H-------hCcHHHHHHHHHHHH
Confidence 689999999999899999999999999999999999998887665554322211 1 112222333334555
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
...+........++.|..|+++|++.+|+.+...+++..++|.+++.+.+..+
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 55666666777888899999999999999999999999999999988876443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=104.39 Aligned_cols=124 Identities=13% Similarity=0.070 Sum_probs=99.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.+..+.+++.....++..++.++.|++.||+|+|+.+..+.++..+..+... . .++....+...++.+
T Consensus 32 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~-------~~~~~~l~~~~~~~G 101 (485)
T TIGR00711 32 LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG---V-------APNLELMIIFRVIQG 101 (485)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh---C-------cCCHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999888666654332211 1 123334444555667
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
+..+...+....++.|..|+++|++++++......+|..+|+.++|++.+..++
T Consensus 102 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 155 (485)
T TIGR00711 102 FGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW 155 (485)
T ss_pred hhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence 777777777888899999999999999999999999999999999999876554
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-08 Score=95.27 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=100.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|+|..+.|++.+...++..++.+..|++.||+|||+++......... ... .... .++....+...++.+
T Consensus 21 ~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~-~~~--~~~~-------~~~~~~l~~~R~l~G 90 (368)
T TIGR00903 21 IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAA-AAG--RLLD-------PFNYEWLLACQLLAA 90 (368)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH-HHH--HHHH-------hccHHHHHHHHHHHH
Confidence 789999999999999999999999999999999988876544332222 111 1111 012333444445555
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH-HHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRL-ATLGL 466 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~ 466 (511)
+..+. ..+....++|..|+++|++++++.+....+|..+++.+++++.+.+|++ ..+.+.+++.+ ..++.
T Consensus 91 ~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr--------~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 91 LGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQ--------LLIIPIAAVAAAGIILV 161 (368)
T ss_pred hHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------HHHHHHHHHHHHHHHHH
Confidence 55554 4455566689999999999999999999999999999999998765533 34444333333 33334
Q ss_pred HhhcCCCC
Q 037870 467 IFLVPKAD 474 (511)
Q Consensus 467 ~~~~~~~~ 474 (511)
..++||.+
T Consensus 162 ~~~lp~~p 169 (368)
T TIGR00903 162 LAALPALP 169 (368)
T ss_pred HHHcCCCC
Confidence 44667643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-08 Score=97.45 Aligned_cols=124 Identities=9% Similarity=-0.030 Sum_probs=98.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.+..+.|++.....++..++.+..+++.||+|+|+.+..+.++..++.+....... .++.+..+...++.+
T Consensus 33 ~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-------~~~~~~~l~~~~l~G 105 (410)
T TIGR00885 33 FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-------IMNYTLFLVGLFILT 105 (410)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-------hccHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999987776654333211110 122333444455667
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
...+....+...++.+..|++++++..++.+...++|..+|+.+++.+...
T Consensus 106 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 106 AGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred hhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777788888899999999999999999999999999999988643
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-08 Score=100.93 Aligned_cols=124 Identities=14% Similarity=0.085 Sum_probs=95.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.+..+.+++.....++..++.+..|++.||+|+|+.+..+.++..+..+.... .++.+..+....+.+
T Consensus 36 l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~----------a~~~~~li~~r~l~G 105 (495)
T PRK14995 36 LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAF----------SPTASWLIATRALLA 105 (495)
T ss_pred hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHH
Confidence 7888999999998899999999999999999999999999887766654332211 123334444455666
Q ss_pred HHHHhhHhHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 388 IISKIRWIPMIVLSTRL-CPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~-~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
++.+...+.....+.+. .|+++|++++|+.....++|..+||.++|++.+.+|+
T Consensus 106 ~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw 160 (495)
T PRK14995 106 IGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW 160 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence 66666555555555555 5789999999999999999999999999999886553
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=100.42 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=89.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC-CChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY-PLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+|+++.+.+.+.........++.+++|++.||+ |+|+.+..+.++..++.+.. ... . .......+ ...+.
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll---~~~-~----~~~~~~~l-~l~li 110 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL---GAS-E----IHPSFLYL-SLAII 110 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH---HHh-h----cchhHHHH-HHHHH
Confidence 689999999998888888899999999999999 99999988876666543211 110 0 00011111 11122
Q ss_pred HHHHHhhHhHHHHHHhhcCCCc--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 387 HIISKIRWIPMIVLSTRLCPIG--IEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~--~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
.+..+...+...+++.|..|++ +|.+.+++.....++|+.++|.+.|++.+..|+
T Consensus 111 ~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw 167 (493)
T PRK15462 111 VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW 167 (493)
T ss_pred HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence 2333444444567788999875 789999999999999999999999999886653
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=100.88 Aligned_cols=124 Identities=14% Similarity=0.020 Sum_probs=91.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKD-YPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+|++.++.+.+.........+..+++|++.|| +|+|+.+..+.++..++.+..... . .+ ....+....+.
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~-~-------~~-~~ll~~~~~l~ 115 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS-L-------LK-PDLIFIALGTI 115 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh-c-------cc-hhHHHHHHHHH
Confidence 78899888887777766677777889999999 999999999987777654332211 0 00 11121223344
Q ss_pred HHHHHhhHhHHHHHHhhcCCCc--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 387 HIISKIRWIPMIVLSTRLCPIG--IEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~--~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
+++.+...+....++.|..|++ +|+..++.+....|+|..+||.++|++.+.+|
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g 171 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG 171 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5555666666778889999876 45788999999999999999999999998765
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-08 Score=96.92 Aligned_cols=123 Identities=12% Similarity=0.073 Sum_probs=90.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.|+.+.+++.....++..++.++.|++.||+|+|+.+..+..+..+..+... . .++.+..+....+.+
T Consensus 38 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~---~-------~~~~~~l~~~~~~~g 107 (394)
T PRK11652 38 LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL---F-------AHSLTVLIAASAIQG 107 (394)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH---H-------HccHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999998887665554322211 1 112222333334445
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
+..+...+.......+..++++++..++..+....++..++|.+++.+.+..|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 160 (394)
T PRK11652 108 LGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG 160 (394)
T ss_pred hhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44444444445566788888899999999999999999999999998877544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-08 Score=95.73 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=92.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.++.+.|++.+...++..++.++.|++.||+++|+.+..+..+..+..+... . .++.+..+....+.+
T Consensus 36 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~---------~~~~~~l~~~~~l~G 105 (401)
T PRK11043 36 LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML-W---------VESAAQLLVLRFVQA 105 (401)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH-H---------hcCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998887655554322211 1 112222233333444
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
+..+.........+.|..|+++++..++..+....++..++|.+++.+.+.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 158 (401)
T PRK11043 106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG 158 (401)
T ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444455556677899999999999999999999999999999999988654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.6e-08 Score=95.85 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=91.1
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHH-HHH-hcCChhH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSAL-MFS-LLGKLPI 153 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~-~~~-~~~~~~~ 153 (511)
...++|.++++++|.+..+.++..++..+...+ +++.|+++||+ +||+.+++..++.++... ... .......
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-----GRRTSMLCFGSLAALFTVPILSALQNVSSP 336 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 455788888877899999998887776666555 88999999996 455555554443322222 111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHH-HHHHHHHHHHHhhccCC-hhhHHHHhhhHH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAA-GSLIGYAVSGFSVNHLG-PQGALGVLAIPP 231 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~~~g~l~~~~g-w~~~f~~~~~~~ 231 (511)
...+....+..++.+........+..|.. +++.|++..|+.+...++ .....|.+.+.+ +..| |...++..++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~f--p~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~ 413 (432)
T PRK10406 337 YAAFGLVMCALLIVSFYTSISGILKAEMF--PAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMA 413 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHH
Confidence 11112122222333333334556677887 446799999987765553 344577777755 4445 555566555555
Q ss_pred HHHHHHHhhccc
Q 037870 232 VLLIVLGFVIYE 243 (511)
Q Consensus 232 ~i~~~~~~~~~e 243 (511)
++..+..+++++
T Consensus 414 ~i~~~~~~~l~~ 425 (432)
T PRK10406 414 VVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHhhh
Confidence 554444444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.5e-08 Score=97.41 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=111.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCc---hhhhhHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPD---SFFVITEQC 384 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 384 (511)
.+.+..+.+++.+...++..++.++.|++.||+|||+++..+..+..+..+.... ..........++ ....+...+
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAW-PEFGFTSIGPDNTGYVPEFVIYRI 128 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-hccccccccccchhHHHHHHHHHH
Confidence 4788899999999999999999999999999999999999887766543332211 000000000111 123345556
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHH
Q 037870 385 VSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATL 464 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 464 (511)
+.++..+...+....++.|..|+++||+++|+.+....+|..+++.+++.+....+.......++...+.+..+..++..
T Consensus 129 l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~ 208 (479)
T PRK10077 129 IGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL 208 (479)
T ss_pred HHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH
Confidence 77888888888888999999999999999999999989999888877766653211100111234445555555555555
Q ss_pred HHHhhcCCCC
Q 037870 465 GLIFLVPKAD 474 (511)
Q Consensus 465 ~~~~~~~~~~ 474 (511)
+..+++||..
T Consensus 209 ~~~~~l~~s~ 218 (479)
T PRK10077 209 MLLYFVPETP 218 (479)
T ss_pred HHHHcCCCCc
Confidence 5455677654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.7e-08 Score=96.69 Aligned_cols=140 Identities=17% Similarity=0.101 Sum_probs=88.0
Q ss_pred cchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHH-HH-HhcCCh
Q 037870 75 SFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSAL-MF-SLLGKL 151 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~-~~-~~~~~~ 151 (511)
.....+.|.|+++.+|.+..+.++......++..+ .+++|+++||+ +||+.++.+.....+... .. ....+.
T Consensus 255 ~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (434)
T PRK15075 255 YLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-----GRRPVLIAFTVLAILTAYPALSWLVAAP 329 (434)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566789998887899999988887777777666 88999999996 455555554433322211 11 111222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHH-HHHHHHHHHHHHHhhccCChh
Q 037870 152 PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCS-AAGSLIGYAVSGFSVNHLGPQ 221 (511)
Q Consensus 152 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~G~~lg~~~~g~l~~~~gw~ 221 (511)
.........++.+++.+...+....+..|..+ ++.|++..++.+... .++..++|.+.|++.++.|++
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p--~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMP--AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC--CCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 22112222333344555544445566777774 456888888754433 345778999999999988864
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.9e-08 Score=94.80 Aligned_cols=149 Identities=17% Similarity=0.056 Sum_probs=97.9
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHhhc-chhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHH-HHHhcC---Chh
Q 037870 79 VVTDYYWKDVQKVQPSVVQIYIGLCYL-PSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSAL-MFSLLG---KLP 152 (511)
Q Consensus 79 ~~~~~~~~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~-~~~~~~---~~~ 152 (511)
...+++++| .|.+++++|++.....+ ...+ ..+.|++.||+ ++|+.+..+.++..+..+ ...... ...
T Consensus 229 ~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (390)
T TIGR02718 229 GLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-----GLWRTFILGVGLAGSLALLWFAQAAFWLAPG 302 (390)
T ss_pred HHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHcccCCc
Confidence 356777777 89999999998887654 4445 67899999996 566666655544422222 111111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHH
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPV 232 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~ 232 (511)
.........+.+++.+...+...+...+..+ +++.+++.++..+...++|..+||.++|++.++.|++..|++.+++.+
T Consensus 303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l 381 (390)
T TIGR02718 303 IAVAWSCSAFGSLITGITSVAIYTAFMRFAG-DGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAV 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 1112222333444455555555555545442 225689999999999999999999999999999999999988776665
Q ss_pred HH
Q 037870 233 LL 234 (511)
Q Consensus 233 i~ 234 (511)
+.
T Consensus 382 ~a 383 (390)
T TIGR02718 382 LA 383 (390)
T ss_pred HH
Confidence 54
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-07 Score=93.62 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=103.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.+....+...+...++..++.+..|++.||+|+|+++..+.++..++.+... . .++....+...++.+
T Consensus 46 ~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~-~---------a~~~~~l~~~r~l~G 115 (413)
T PRK15403 46 FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL-F---------TTSMTQFLIARFIQG 115 (413)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH-H---------cCCHHHHHHHHHHHH
Confidence 688899999888888999999999999999999999999888665554332211 1 122233333444555
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLI 467 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (511)
+..+...........|..|++++++.+++.+...+++..+||.+++.+.+..|+ ...+.+..+..++..+..
T Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw--------~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 116 TSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW--------KVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHH
Confidence 544443444456677889999999999999999999999999999998876542 234444444444444433
Q ss_pred -hhcCCCC
Q 037870 468 -FLVPKAD 474 (511)
Q Consensus 468 -~~~~~~~ 474 (511)
+.+|+++
T Consensus 188 ~~~lp~~~ 195 (413)
T PRK15403 188 LLAMPETV 195 (413)
T ss_pred HHhCCCCc
Confidence 3566643
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.6e-08 Score=93.88 Aligned_cols=143 Identities=17% Similarity=0.252 Sum_probs=103.9
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 037870 79 VVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIAL 157 (511)
Q Consensus 79 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (511)
...|.++++ .|.+..+.|.+.++..+...+ .++.|++.||+ ++|+.+..+.+...+..++++..++.+. .+
T Consensus 226 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 297 (382)
T PRK11128 226 GFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-----SARDLLLLSAICGVVRWGLMGSTTALPW--LI 297 (382)
T ss_pred HHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHhhhhHHH--HH
Confidence 345667765 899999999988877666555 78899999995 6777777888877777777777665443 45
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHH-HHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 158 ACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCG-FCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
+..++.+++.+...+....+..+.. ++++++.++.++ ...++|..+||.++|.+.+.+|+ ..++..+++.++
T Consensus 298 ~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 298 VIQILHCGTFTVCHLAAMRYIAARP---GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 5566777777776666666655542 334677888775 55677889999999999999987 466665555544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.6e-08 Score=96.38 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=99.7
Q ss_pred hhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 037870 79 VVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIAL 157 (511)
Q Consensus 79 ~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (511)
...|+++++.+|.+....++......++..+ .|++++++||+ ++|+.+.++.++.+++.+.+.+.+..+.+...
T Consensus 249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-----g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 323 (448)
T PRK09848 249 ASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-----GKKNTFLIGALLGTCGYLLFFWVSVWSLPVAL 323 (448)
T ss_pred hhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcCchhHHHHH
Confidence 3467777777888776655544443455555 88999999996 56777787887777777777665533333345
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcchhhh-----ccccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 037870 158 ACSVGISAGIAIADVVIDACIARNSIEIR-----ALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220 (511)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw 220 (511)
...++.++|.+...+...++..|..+.++ +++|...+..+....+|..+|+.+.|.+.+..|+
T Consensus 324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55667788888888888888888775322 3458888999999999999999999998776665
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=93.12 Aligned_cols=124 Identities=13% Similarity=0.066 Sum_probs=91.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
++|+|.++.+++.++..++..+..+..|++.||+|.|+++..+.++..+..+....... + ..++....+...++.
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~--~---~~~s~~~lli~r~l~ 138 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ--N---PNTPFGIFIVIALLC 138 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc--c---cCCCHHHHHHHHHHH
Confidence 48999999999998888888899888899999999999998887666543322111100 0 012333444444455
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVL 436 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~ 436 (511)
++. +..+.+....+++..|+++||+++|+....+++|..+++.+.+.+.
T Consensus 139 Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 139 GFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 554 5577778888999999999999999998888888888877776644
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.8e-08 Score=94.33 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=99.9
Q ss_pred hhhhhhhccc---CCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHH
Q 037870 80 VTDYYWKDVQ---KVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAI 155 (511)
Q Consensus 80 ~~~~~~~~~~---g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 155 (511)
+.+.|+++.+ +.+....|.+.++..+...+ .+..|++.||+ +||+.+.++.++.++...+....++...
T Consensus 237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-----g~~~~l~~~~~l~~l~~~~~~~~~~~~~-- 309 (396)
T TIGR00882 237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-----GAKNALLIAGTIMSVRIIGSSFATTALE-- 309 (396)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHhcCChHH--
Confidence 4566655533 55667788888777666555 78899999996 5677777777777777766666665443
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHH-HHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHH
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSL-CGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLL 234 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~ 234 (511)
++...++.+++..........+..+.. +++.+++..+. .+....+|..+++.++|++.+..||+.+|.+.+++.++.
T Consensus 310 ~~~~~~l~g~~~~~~~~~~~~~~~~~~--~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 310 VVILKMLHAFEVPFLLVGCFKYITSQF--DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF 387 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344455666655443322222333322 22334555544 567889999999999999999999999999988887774
Q ss_pred HH
Q 037870 235 IV 236 (511)
Q Consensus 235 ~~ 236 (511)
.+
T Consensus 388 ~~ 389 (396)
T TIGR00882 388 TL 389 (396)
T ss_pred HH
Confidence 43
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-08 Score=94.97 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHh
Q 037870 316 GLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWI 395 (511)
Q Consensus 316 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
+.+.++..+|+++|++..+.+.||+|||..+.+..++..+..+....... .+..-..+.+-++.+...+....
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-------~~~~e~li~GR~i~Gl~~gl~~~ 135 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-------APSFEMLILGRLIVGLACGLSTG 135 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHhHHHHH
Confidence 33447888999999999999999999999888887776665444332211 22233455566677777788887
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 037870 396 PMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKADQ 475 (511)
Q Consensus 396 ~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (511)
....+++|.+|++.||....+......+|..++..++- -..+| ....+++.+.+..+.+++.++.+.++||..+
T Consensus 136 ~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l--~~ilG----t~~~W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 136 LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL--PSLLG----TEDLWPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc--HHhcC----CCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 88888999999999999877766666666666644332 12233 2233556666777777888888889998654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-07 Score=93.39 Aligned_cols=150 Identities=15% Similarity=0.048 Sum_probs=90.4
Q ss_pred hhhhhhcccCCChHHHHHHHHHhhc-chhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHH---HHHhcCChhHHH
Q 037870 81 TDYYWKDVQKVQPSVVQIYIGLCYL-PSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSAL---MFSLLGKLPIAI 155 (511)
Q Consensus 81 ~~~~~~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 155 (511)
.++++.+++|.++.++|++.+.... +..+ .++.|+++||+ +||+.+..+.+...+..+ .+++.++.. ..
T Consensus 232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-----g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~-~~ 305 (402)
T PRK11902 232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-----GLYRSLMLFGVLQAVSNLGYWVLAVTPKHL-WT 305 (402)
T ss_pred HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-HH
Confidence 3445556689999999998766543 4555 78899999996 455555555444443332 223433222 22
Q ss_pred HHHHHHH----HHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHH
Q 037870 156 ALACSVG----ISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPP 231 (511)
Q Consensus 156 ~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~ 231 (511)
+....++ .+++.+...+....++.+..+ ++.++..+...++|..+++.++|.+.+++||+..|.+.++++
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~ 379 (402)
T PRK11902 306 MALAIGIENLCGGMGTAAFVALLMALCNRSFS------ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 2333323 333333333333334333322 233455556667888877889999999999999999988877
Q ss_pred HHHHHHHhhcc
Q 037870 232 VLLIVLGFVIY 242 (511)
Q Consensus 232 ~i~~~~~~~~~ 242 (511)
++..++....+
T Consensus 380 ~~~~~~~~~~~ 390 (402)
T PRK11902 380 LPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHh
Confidence 77544443333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-08 Score=100.00 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=95.8
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccC-CCC-CchHHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIK-GYH-RRPYFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~-g~~-Rr~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
..++|.++.+++|.+..+.+.+.++..+...+ .+++|+++||+.++ +.+ |+..+.+..++.++..++.+..++...
T Consensus 272 ~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~- 350 (476)
T PLN00028 272 DNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGA- 350 (476)
T ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHH-
Confidence 44678887777899999999998888887766 88999999998421 211 223333333333333344444443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLL 234 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~ 234 (511)
.++..++.+++.+.......++..+.. ++.++...++.+.+.++|+.+++.+.+ ..+..+|+..|++.+++.++.
T Consensus 351 -~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~ 425 (476)
T PLN00028 351 -AIVVMILFSIFVQAACGATFGIVPFVS---RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIAC 425 (476)
T ss_pred -HHHHHHHHHHHHHHhhhhhcccCcccC---hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHH
Confidence 233333444444333333444444443 346888898877766677766665543 122346999999988777775
Q ss_pred HHHHhhcc
Q 037870 235 IVLGFVIY 242 (511)
Q Consensus 235 ~~~~~~~~ 242 (511)
.++.++++
T Consensus 426 ~~~~~~~~ 433 (476)
T PLN00028 426 TLPVAFIH 433 (476)
T ss_pred HHHHHhee
Confidence 55555443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=94.88 Aligned_cols=169 Identities=17% Similarity=0.115 Sum_probs=112.9
Q ss_pred HHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHH
Q 037870 61 GIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGC 139 (511)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~ 139 (511)
.+.+.|..+.|--.. +..++|.|+++++|.++.+.|.+.+.+.+...+ .|.+|+++||++ +|| ++......++
T Consensus 222 ~lsllY~~tFG~Fvg-fs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~G----g~r-v~~~~f~~~~ 295 (417)
T COG2223 222 LLSLLYFATFGGFVG-FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIG----GRR-VTLAVFVGMA 295 (417)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhcc----chh-HHHHHHHHHH
Confidence 344444333332222 355789999999999999999888887776655 999999999973 444 5555555666
Q ss_pred HHHHHHHhcCC-----hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037870 140 VSALMFSLLGK-----LPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFS 214 (511)
Q Consensus 140 ~~~~~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l 214 (511)
++.....+.++ .+...++...+...+..+........+++.+.+ ++.|.+.|+....+++|...-|..-|..
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~---~~~G~v~G~vga~G~lGGf~lp~~~g~~ 372 (417)
T COG2223 296 LAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP---KETGAVTGIVGAIGGLGGFFLPLAFGVS 372 (417)
T ss_pred HHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH---hhhhHHHHHHHHhccccccchhHHHHHH
Confidence 66666555431 122223333333444444444445555555543 3578888988899999988888888999
Q ss_pred hccCC-hhhHHHHhhhHHHHHHHHH
Q 037870 215 VNHLG-PQGALGVLAIPPVLLIVLG 238 (511)
Q Consensus 215 ~~~~g-w~~~f~~~~~~~~i~~~~~ 238 (511)
.+..| +...|++.....++..+..
T Consensus 373 ~~~tg~~~~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 373 LDLTGSYTGAFMLLLAFYLVALVLT 397 (417)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHH
Confidence 88887 8899998887777755433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-06 Score=81.14 Aligned_cols=308 Identities=14% Similarity=0.102 Sum_probs=163.4
Q ss_pred HHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037870 99 YIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDAC 177 (511)
Q Consensus 99 ~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 177 (511)
+.-+-.+|..+ +.++-++.+|++ |++|. ....++..++.++.+++++..+ -+++.++.+++.+......-++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~---y~~Ri--~~~~~l~~~g~l~va~~~~v~~--~l~Gv~las~ssg~GE~tfL~l 136 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVP---YWIRI--LICVALSAAGMLLVAFSPSVWV--RLLGVVLASLSSGLGEVTFLSL 136 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhcc---chHHH--HHHHHHHHHHHhheeeccchhH--HHHHHHHHhhhhhhhHHHHHHH
Confidence 44444566655 777777888876 55663 3445577778888888876554 4566777888888888777776
Q ss_pred HhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc-cCChhhHHHHhhhHHHHHHHHHh-hccccccccc--chh-
Q 037870 178 IARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN-HLGPQGALGVLAIPPVLLIVLGF-VIYETRSANI--RSE- 252 (511)
Q Consensus 178 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~-~~gw~~~f~~~~~~~~i~~~~~~-~~~e~~~~~~--~~~- 252 (511)
..... + ...+.+.++.+.++++|+..--.+.+ ..+.|..+.+..++.++..+.++ .+|.++.... +.+
T Consensus 137 t~~y~---~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~ 209 (402)
T PF02487_consen 137 THFYG---K----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESES 209 (402)
T ss_pred HHhcC---c----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCC
Confidence 55432 1 22444556777778888776655544 23457788887777766544433 4442221110 000
Q ss_pred ---hhh-----h----------hhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhH
Q 037870 253 ---KKK-----V----------MENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEF 314 (511)
Q Consensus 253 ---~~~-----~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 314 (511)
.++ + +.+.++..+..+.++. -.....+..+.......+..... .|. .. ..-...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~--ymiPL~lVY~aEY~InqGv~~tl-~fp-~~---~~~~r~~ 282 (402)
T PF02487_consen 210 EDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLW--YMIPLFLVYFAEYFINQGVAPTL-LFP-NS---FFSPRDQ 282 (402)
T ss_pred CCcccccccccccccccccccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhchHHHh-cCC-cc---CCCHHHH
Confidence 000 0 0011111122222111 01111111222222222221111 111 11 1222446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhH
Q 037870 315 VGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRW 394 (511)
Q Consensus 315 ~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (511)
+-+......+|.+++.--.. + +..|++.+.+.+-..- +..+.+ ..+.. ..|+.+.++...+..|+.+|..+
T Consensus 283 Y~~Y~~~YQ~GVFISRSS~~-~---~rir~lwils~LQ~~n--l~~~~l-~s~~~--fipsi~ivf~lif~eGLlGGa~Y 353 (402)
T PF02487_consen 283 YRWYQLLYQLGVFISRSSLP-F---FRIRRLWILSLLQVIN--LVFLLL-QSWYR--FIPSIWIVFVLIFYEGLLGGASY 353 (402)
T ss_pred HHHHHHHHHHHHhhhhccee-e---eehhhHHHHHHHHHHH--HHHHHH-HHHHH--HhhHHHHHHHHHHHHHHhhhHHH
Confidence 66666777766555543221 1 2234433333222211 111111 11111 14555666666678889999999
Q ss_pred hHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 037870 395 IPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVL 436 (511)
Q Consensus 395 ~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~ 436 (511)
+.....+.|..|+++|--.+|..+...++|..++..++-.+-
T Consensus 354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999988898899999999999988888888888777765543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=7e-08 Score=97.91 Aligned_cols=160 Identities=9% Similarity=-0.093 Sum_probs=100.7
Q ss_pred hccCCc-chHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChHHHH
Q 037870 270 SMKCPQ-VWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKD-YPLRNLLF 347 (511)
Q Consensus 270 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~l~ 347 (511)
.+++|+ ++......++....++......+.|..+. +|++..+.+.+.............+.|++.|| +|+|+.+.
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~---lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~ 92 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ---LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM 92 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 346664 55555444555444444333334444333 78999888777655544444555688999999 59999998
Q ss_pred HHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcc--hHHHHHHHHHHHHHHH
Q 037870 348 SAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGI--EGTFFALLMCIDSIGS 425 (511)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~gl~~~~~~lg~ 425 (511)
.+.++..++.+... +.. ......+....+.+++.+...+....++.+..|++. ++.++++++...++|.
T Consensus 93 ~g~~~~~ig~~l~~-~~~--------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~ 163 (500)
T PRK09584 93 LGAIVLAIGYALVA-WSG--------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGS 163 (500)
T ss_pred HHHHHHHHHHHHHH-Hhc--------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHH
Confidence 88766665322211 110 111122222234455556555666678888887643 4567888899999999
Q ss_pred hHHHHHHHHHHHHhcc
Q 037870 426 LTSKWGGGIVLHLLHV 441 (511)
Q Consensus 426 ~~g~~l~g~l~~~~g~ 441 (511)
.+||.++|++.+.+|+
T Consensus 164 ~~gp~i~g~l~~~~g~ 179 (500)
T PRK09584 164 FFSMLATPWLAAKYGW 179 (500)
T ss_pred HHHHHHHHHHHHhhCH
Confidence 9999999999987653
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-08 Score=91.73 Aligned_cols=116 Identities=11% Similarity=0.117 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHH-HHHHHH
Q 037870 310 FSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITE-QCVSHI 388 (511)
Q Consensus 310 ~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 388 (511)
-+....|.+.+...+...+.+..+|.+.||+|||.++.++.....+ .+..+.. ...+..++. -++.+.
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~---s~ll~~~--------S~~F~afv~aR~l~Gi 133 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVAL---SYLLWAL--------SRNFAAFVLARFLGGI 133 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHH---HHHHHHH--------HHHHHHHHHHHHhhhh
Confidence 3455677777899999999999999999999999999888555543 2222221 111111111 222222
Q ss_pred HHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 389 ISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
.. ....+..++++|++++++|+.+++.++...++|..+||.+||++.+
T Consensus 134 ~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 134 FK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred cc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 22 2345667889999999999999999999999999999999999998
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=94.56 Aligned_cols=167 Identities=12% Similarity=0.108 Sum_probs=109.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhc----cCCChHHHHHHHHHHHHhhhhhHHHhhhcccccC----CCc-h--
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLK----DYPLRNLLFSAQLLYGISGMLDLIFILRWNLALG----IPD-S-- 376 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~----r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-- 376 (511)
+|.+....+.+..+..+..++..++.|++.| |+|||+.+...........+..+.........++ ... .
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 6899999999999999999999999999999 5999999887644444332222222111000000 000 0
Q ss_pred -hhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcch--HHHHHHHHHHHHHHHhHHHHHHHHH--HHHhccCCCCc-----
Q 037870 377 -FFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIE--GTFFALLMCIDSIGSLTSKWGGGIV--LHLLHVTRTDF----- 446 (511)
Q Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--g~~~gl~~~~~~lg~~~g~~l~g~l--~~~~g~~~~~~----- 446 (511)
++.+....+..+.......|..+++.|.+|+++| +.+++..+...++|+.+|+.+++.. .+.++......
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC 193 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence 1222233344556677778888999999998865 6799999999999999999999976 34444432111
Q ss_pred cchHHHHHHHHHHHHHHHHHHh-hcCCCC
Q 037870 447 TNLWLVILIRNVLRLATLGLIF-LVPKAD 474 (511)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 474 (511)
.++...|.+.+++.+++..... ..+|..
T Consensus 194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 194 ANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 1345566676666666555544 455543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.1e-08 Score=108.59 Aligned_cols=147 Identities=12% Similarity=-0.056 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHh
Q 037870 313 EFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKI 392 (511)
Q Consensus 313 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
...++...+..+..++..++.|++.||+++|+++.....+..+.......... .++.+.++...++.+++.++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-------~~s~~~l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-------LNSVPLLFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHh
Confidence 45666677888999999999999999999999764422222211111111110 12334455556677777788
Q ss_pred hHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHhhcCC
Q 037870 393 RWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPK 472 (511)
Q Consensus 393 ~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
..+...+++.++.|+++++.++|+.++..++|..+||.++|++.+..++ ...+....++.++.+++.+++|+
T Consensus 125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 196 (1140)
T PRK06814 125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNF--------VILVALLMGIAVLGWLASLFIPK 196 (1140)
T ss_pred hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc--------HHHHHHHHHHHHHHHHHHhhCCC
Confidence 8888889999999999999999999999999999999999999886542 22333333444444444455665
Q ss_pred CC
Q 037870 473 AD 474 (511)
Q Consensus 473 ~~ 474 (511)
.+
T Consensus 197 ~~ 198 (1140)
T PRK06814 197 TG 198 (1140)
T ss_pred CC
Confidence 43
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-08 Score=108.81 Aligned_cols=121 Identities=8% Similarity=-0.076 Sum_probs=92.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHH
Q 037870 311 SQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIIS 390 (511)
Q Consensus 311 s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
+....+++.++..++.+++.++.|++.||+|+|+++..+.++..+..+...+... ....+.+++..++.++..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~r~l~G~~~ 117 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY-------LGWFWLAFAVTFLLGAQS 117 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHHHH
Confidence 3445677778888999999999999999999999998876554443322222111 112233444455667777
Q ss_pred HhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 391 KIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
++..+...+++.|.+|+++|++++|+.+...++|..+|+.+++++.+.
T Consensus 118 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 118 AIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777778888999999999999999999999999999999999999876
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=87.00 Aligned_cols=158 Identities=15% Similarity=0.050 Sum_probs=118.6
Q ss_pred ccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 70 QGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
|+..++....|+|.++.| .|+|..+.|+..+...+.... ..+.=.+++|. ..+|++.+.....+.++.+.+.+.
T Consensus 220 qS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~----~n~r~~~~~~~~~~l~G~~G~~~~ 294 (395)
T COG2807 220 QSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS----KNQRPLVVLALLLMLVGLVGLLLA 294 (395)
T ss_pred hHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHHHHHHh
Confidence 555556677899999998 899999999999888776555 44455577764 267888888888888888888887
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhhHHHHh
Q 037870 149 GKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL-GPQGALGVL 227 (511)
Q Consensus 149 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~-gw~~~f~~~ 227 (511)
|....... .++.|+|.+...+..-.++.+..+ ++++.++..+..+..+++=...||.+.|++-|.. +|+...+..
T Consensus 295 P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~-~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l 370 (395)
T COG2807 295 PGQLPILW---ALLLGLGQGGAFPLALTLILLRSS-DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLL 370 (395)
T ss_pred hhhHHHHH---HHHHhCccchHHHHHHHHHHhhcC-ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHH
Confidence 76543211 467788877777777777777664 3456788888777788888888999999999876 598888776
Q ss_pred hhHHHHHHH
Q 037870 228 AIPPVLLIV 236 (511)
Q Consensus 228 ~~~~~i~~~ 236 (511)
+...++..+
T Consensus 371 ~~~~i~m~i 379 (395)
T COG2807 371 ALATLLMLI 379 (395)
T ss_pred HHHHHHHHH
Confidence 665555433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=103.08 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=118.4
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhh---cc--------------
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILR---WN-------------- 368 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~-------------- 368 (511)
+.++++..+.|++.+...++..++.++.+++.||.++|+.+.++.++..++.++..+.... ..
T Consensus 61 k~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~ 140 (633)
T TIGR00805 61 RRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA 140 (633)
T ss_pred hhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence 4478999999999999999999999999999999999999999887777665543221100 00
Q ss_pred ---ccc-C--------------------CCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 037870 369 ---LAL-G--------------------IPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIG 424 (511)
Q Consensus 369 ---~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg 424 (511)
... . .....++++..++.+++.+..++....++.|.+|+++++.+.|+++....+|
T Consensus 141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG 220 (633)
T TIGR00805 141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG 220 (633)
T ss_pred ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence 000 0 0012234455666676666667777788999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHhc-cC----------CCC--c-cchHHHHHHHHHHHHHHHHHHhhcCCCC
Q 037870 425 SLTSKWGGGIVLHLLH-VT----------RTD--F-TNLWLVILIRNVLRLATLGLIFLVPKAD 474 (511)
Q Consensus 425 ~~~g~~l~g~l~~~~g-~~----------~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
..+|+.++|++.+.+. +. ..+ + +.+|..|.+.+++.++..+.++.+|++.
T Consensus 221 ~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~l 284 (633)
T TIGR00805 221 PAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKAL 284 (633)
T ss_pred hHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 9999999999987642 11 111 1 1245556666666655555555666544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=78.25 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHH
Q 037870 321 LGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVL 400 (511)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (511)
...++.+++.+..+++.||+++|+.+..+..+..+..+... . .++.+.......+.++..+...+.....
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 75 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA---L-------SSNITVLIIARFLQGFGAAFALVAGAAL 75 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH---H-------hccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44567888889999999999999998877655554322211 1 1122233333445566666666677788
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 401 STRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 401 ~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
..|..|++++++.+++.+...+++..+++.+.+.+.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 115 (141)
T TIGR00880 76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG 115 (141)
T ss_pred HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence 8999999999999999999999999999999999876543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-07 Score=88.16 Aligned_cols=152 Identities=12% Similarity=0.030 Sum_probs=95.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC-----CChHHHH-HHHHHHHHhhhhhHHHhhhcccccCCCchhhhhH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY-----PLRNLLF-SAQLLYGISGMLDLIFILRWNLALGIPDSFFVIT 381 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-----~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (511)
.|+|.+++|+.... .+...+ .++.|++.||+ ||||.+. .+.++..+.... +.+.. .....+....
T Consensus 18 ~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~-l~~~~------~~~~l~~l~~ 88 (356)
T TIGR00901 18 KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI-LSFLV------PSTDLPLLAG 88 (356)
T ss_pred cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH-HHcCC------cchhHHHHHH
Confidence 68999999988644 333333 67888999987 7878654 443333322111 11111 1112223333
Q ss_pred HHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Q 037870 382 EQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRL 461 (511)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 461 (511)
...+.+.+.+...++..+++.|.+|+++|+.+.|+.....++|..+++.+++.+.+..|.....-..+...+.+.+++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l 168 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLIL 168 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHH
Confidence 33344566666777888899999999999999999999999999999999999988776321111113344555555555
Q ss_pred HHHHHHh
Q 037870 462 ATLGLIF 468 (511)
Q Consensus 462 ~~~~~~~ 468 (511)
+.++..+
T Consensus 169 ~~~~~~~ 175 (356)
T TIGR00901 169 PGLLVTL 175 (356)
T ss_pred HHHHHHH
Confidence 5444433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-09 Score=100.90 Aligned_cols=125 Identities=13% Similarity=0.053 Sum_probs=100.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
..+|.++...|++.....+...+..++.|.+.||++|++++..+..+...+.+..... ...|.++..-.+
T Consensus 61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----------~~Fwq~~l~R~~ 130 (493)
T KOG1330|consen 61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----------NHFWQVLLCRGF 130 (493)
T ss_pred HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999887777543322111 122334444556
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
.+++.+...+....++++.+|.++|++++++++.....|+.+|-..+..+.+..+
T Consensus 131 vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 131 VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 6667777777788999999999999999999999999999999999888887654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=88.36 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=113.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
.+-+++++|+++....+..++...+.|.+.||+|+|..+.++.+++....++ +.. .....+.+..-.+.+
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTil---Faf-------g~sy~~l~vAR~LQg 170 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTIL---FAF-------GNSYPMLFVARSLQG 170 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHH---HHH-------cchhHHHHHHHHHhh
Confidence 5667889999999999999999999999999999999999987766653322 211 112334556667888
Q ss_pred HHHHhhHhHHHHHHhhcCCCcc-hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGI-EGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGL 466 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~-~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (511)
+..+.......+++++.+|++. ||+++|..-....+|..+||.+||.+++..|++.. |++++++.++-..+
T Consensus 171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP--------FlVL~~v~Lld~~L 242 (464)
T KOG3764|consen 171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP--------FLVLAIVLLLDGAL 242 (464)
T ss_pred hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCc--------HHHHHHHHHHHHHH
Confidence 8888888888999999988876 59999999999999999999999999999987642 55555555555555
Q ss_pred Hhhc
Q 037870 467 IFLV 470 (511)
Q Consensus 467 ~~~~ 470 (511)
.+++
T Consensus 243 ~l~v 246 (464)
T KOG3764|consen 243 QLLV 246 (464)
T ss_pred HHhe
Confidence 4433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.5e-07 Score=90.49 Aligned_cols=162 Identities=12% Similarity=0.102 Sum_probs=117.4
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh--------
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL-------- 147 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~-------- 147 (511)
.......|.++++|++..+...+.-+..+...+ ..++|++.||++ .++|+.++.+.++..+..+...+
T Consensus 300 i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g---~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g 376 (477)
T PF11700_consen 300 IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFG---PKTKRTLLISLILWIIIPLYGLFGFWPSFFG 376 (477)
T ss_pred HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 344556677778999999987776666666666 788999999973 23346666666555333332222
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHH
Q 037870 148 LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-PQGALGV 226 (511)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-w~~~f~~ 226 (511)
.++.+ .+.+..++.|+..+...+..-++.+++.|+ ++.+...|++....-..+.+||.+.|.+.+..| -|..+..
T Consensus 377 ~~~~~--~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~--g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 377 LKSPW--EFWVLAVLIGLFMGGIQSASRSLFSRLIPP--GREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cccHH--HHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 22222 244556677888888888999999999954 446999999999999999999999999999886 8888888
Q ss_pred hhhHHHHHHHHHhhccccc
Q 037870 227 LAIPPVLLIVLGFVIYETR 245 (511)
Q Consensus 227 ~~~~~~i~~~~~~~~~e~~ 245 (511)
..++.++.+++.+.+++++
T Consensus 453 l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 453 LLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred HHHHHHHHHHHHhhccchh
Confidence 7777777666666676554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=91.99 Aligned_cols=133 Identities=11% Similarity=-0.017 Sum_probs=97.2
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
..++|.++++ .|.+..+.+.+.+...++..+ +++.|+++||++ +||..+..+.++.+++.+.+.+.++....
T Consensus 217 ~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 289 (355)
T TIGR00896 217 IGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVK----DQRGIVAVLAVLQLVGLCGLLFAPMHGLW-- 289 (355)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHHHHHHHHHHHHHHHHHHHhhhhHHH--
Confidence 4567888876 799999999999998888877 899999999962 56666666767777776666665543322
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG 219 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g 219 (511)
...++.+++.+...+...+.+.+..+ ++++++...++.+...++|..+||.+.|++.++.|
T Consensus 290 -~~~~l~g~~~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 290 -AWALVLGLGQGGAFPLALTLIGLRSR-QAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred -HHHHHHHHhhhhHhHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12345677776666655555544332 23457888888888888999999999999998876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-07 Score=94.25 Aligned_cols=147 Identities=17% Similarity=0.023 Sum_probs=101.5
Q ss_pred cCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037870 89 QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGI 167 (511)
Q Consensus 89 ~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 167 (511)
++.+......+.++ .... .++.+.++||+ +||+.+..+.++.+++.+++.+.++..........++.+++.
T Consensus 353 ~~~~~~~~~~~~~~---~~i~~~~~~~~l~dr~-----grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 424 (505)
T TIGR00898 353 LGGNIYLDLFISGL---VELPAKLITLLLIDRL-----GRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI 424 (505)
T ss_pred cCCChHHHHHHHHH---HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 55554444333332 2223 56788999996 678888888888888877777766543222333444555555
Q ss_pred HHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHHHHhhccccccc
Q 037870 168 AIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIYETRSA 247 (511)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~ 247 (511)
+........+..|..+ ++.|++.+++.+....+|.+++|.+.+ + +..++...+++.++..++..+..+++||++..
T Consensus 425 ~~~~~~~~~~~~e~~p--~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~ 500 (505)
T TIGR00898 425 TSAFQMVYLYTAELYP--TVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKGV 500 (505)
T ss_pred HHHHHHHHHHhccccc--HHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCC
Confidence 5555666777788874 356899999999999999999999998 4 44567778888877777766666778887653
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-07 Score=92.41 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=125.7
Q ss_pred ccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChh
Q 037870 74 GSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLP 152 (511)
Q Consensus 74 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~ 152 (511)
.......+|.+.++ +|.+..+.+.+.++..+...+ .++.|+++|+.. .+++.+..++.+..+++.+.+++.+++.
T Consensus 314 ~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---~~~~~~~~~~ll~~gl~~~~~p~~~~~~ 389 (509)
T KOG2504|consen 314 FNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---IRALVLFLLTLLIAGLARLFLPFATTYV 389 (509)
T ss_pred HHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---cchHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34455677888775 999999999999999888777 899999999963 2456666778888888888888888654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHhhhHH
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-PQGALGVLAIPP 231 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-w~~~f~~~~~~~ 231 (511)
.++....+.|+..+.......-.+.|+... ++-..+.|+......++.++||+++|.+.+..| |...|+.+++..
T Consensus 390 --~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~--~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~ 465 (509)
T KOG2504|consen 390 --GLIVFSILFGFCVGSFSSLTPVILVDLVGL--EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCF 465 (509)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHcCh--hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHH
Confidence 345555666777766666555566777643 446778999999999999999999999999887 999999999888
Q ss_pred HHHHHHHhhcc
Q 037870 232 VLLIVLGFVIY 242 (511)
Q Consensus 232 ~i~~~~~~~~~ 242 (511)
++...+++..+
T Consensus 466 ~~s~~~~~~~~ 476 (509)
T KOG2504|consen 466 LLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHhH
Confidence 88766666666
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-05 Score=78.58 Aligned_cols=260 Identities=12% Similarity=0.086 Sum_probs=133.7
Q ss_pred hhcccCC-----ChHHHHHHHHHhhcchhh--hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc--CChh---
Q 037870 85 WKDVQKV-----QPSVVQIYIGLCYLPSVM--KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL--GKLP--- 152 (511)
Q Consensus 85 ~~~~~g~-----s~~~~g~~~s~~~l~~~~--~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~--~~~~--- 152 (511)
++|.+.+ +.+.+.++.+...+|.++ .|+.+++++|+ +|++++-.....+.....+.++. |+..
T Consensus 29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-----~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~ 103 (472)
T TIGR00769 29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-----SKEALFYTVISPFLGFFALFAFVIYPLSDLLH 103 (472)
T ss_pred hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHhHHHHHHHHHHHHHHHHHHHhcchhhcC
Confidence 4565544 447888998888888654 79999999996 45555544444444433333322 1100
Q ss_pred ------------------------HHHHHHHHHHHHHHHHHH-HHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHH
Q 037870 153 ------------------------IAIALACSVGISAGIAIA-DVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIG 207 (511)
Q Consensus 153 ------------------------~~~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg 207 (511)
.+...++.+...+-.... .....++..|.... ++..|..+++..+.++|.++|
T Consensus 104 p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~--~qakRfy~l~~~ganlg~i~s 181 (472)
T TIGR00769 104 PTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTI--DEAKRFYALFGLGANVALIFS 181 (472)
T ss_pred CcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 011112222233322222 23667788888744 446778999999999999999
Q ss_pred HHHHHHhhc-------cC-Chh----hHHHHhhhHHHHHHHHHhhcccccccccc---hh-hhhhhhhHHHHHHHHHHhc
Q 037870 208 YAVSGFSVN-------HL-GPQ----GALGVLAIPPVLLIVLGFVIYETRSANIR---SE-KKKVMENVEFTTKGMYKSM 271 (511)
Q Consensus 208 ~~~~g~l~~-------~~-gw~----~~f~~~~~~~~i~~~~~~~~~e~~~~~~~---~~-~~~~~~~~~~~~~~~~~~l 271 (511)
+.+..++.+ .. .|. ..+.+.++...+...+..++.+....++. .+ +++..++.......++.++
T Consensus 182 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~ 261 (472)
T TIGR00769 182 GRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLV 261 (472)
T ss_pred HHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHHH
Confidence 999888763 11 232 23333333333333333333221111110 00 0000011011234566778
Q ss_pred cCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCCh----hHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHH
Q 037870 272 KCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQ----EFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLF 347 (511)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~----~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~ 347 (511)
++|-++...++..++........ ..|.....+ ..-++ ...|.+....++..++..++.+++.+|+|.+....
T Consensus 262 ~S~yL~~ia~~vi~y~~~~nlve---~~~k~~v~~-~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~ 337 (472)
T TIGR00769 262 SSPYILDLALLVIAYGISINLVE---VTWKSKLKA-QYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAAL 337 (472)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88877766655544433211111 011111000 00122 23344444445555555566699999999988777
Q ss_pred HHHHHHHH
Q 037870 348 SAQLLYGI 355 (511)
Q Consensus 348 ~~~~~~~~ 355 (511)
+.-++..+
T Consensus 338 i~Pii~li 345 (472)
T TIGR00769 338 ITPLVMLL 345 (472)
T ss_pred HHHHHHHH
Confidence 76555544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-07 Score=91.90 Aligned_cols=123 Identities=13% Similarity=0.022 Sum_probs=95.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
++|.|+.+.|++.....++..++.+..|++.||+|+|+++..+.++..++.+....... .++....+...++.
T Consensus 55 ~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-------a~~~~~ll~~r~l~ 127 (438)
T PRK10133 55 AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------IMNYTLFLVGLFII 127 (438)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999987777664432211110 12333444455566
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVL 436 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~ 436 (511)
++..+...+..+..+.+..|+++++..+++.+....+|..+|+.+++.+.
T Consensus 128 G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777787888777676667899999999999999999988765
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8e-06 Score=79.66 Aligned_cols=319 Identities=11% Similarity=-0.021 Sum_probs=165.0
Q ss_pred HHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037870 100 IGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACI 178 (511)
Q Consensus 100 ~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 178 (511)
.++....+.+ ..+.+.+.|+. +-|+.|+++........+..-+. |... ++..-.+.|+|.+..+..-..++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-----~~K~~lv~ga~~y~~f~~gfl~~-N~y~--~yfssallG~Gaallw~GqG~yl 127 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-----GPKWALVIGATCYAAFPLGFLFP-NSYY--LYFSSALLGFGAALLWTGQGGYL 127 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-----hHHHHHHHHhHHHHHHHHHHHhc-chHH--HHHHHHHhhhhHHheecccceeh
Confidence 3344444545 77888999997 46888888877776665554443 3222 45667788999988777777788
Q ss_pred hhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccC--------Chh-h----------HHHHhhhHHHH---HHH
Q 037870 179 ARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL--------GPQ-G----------ALGVLAIPPVL---LIV 236 (511)
Q Consensus 179 ~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~--------gw~-~----------~f~~~~~~~~i---~~~ 236 (511)
.+...++. +.+..++.+.....+.++|..+--.+..+. +.+ . ...+.+++..+ .++
T Consensus 128 t~~st~~t--ie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i 205 (461)
T KOG3098|consen 128 TSNSTRET--IERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSII 205 (461)
T ss_pred hhcCChhh--HHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhh
Confidence 88775544 455577777777777777766553332111 111 0 11111111111 111
Q ss_pred HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhH-H
Q 037870 237 LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEF-V 315 (511)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~ 315 (511)
...+.|.+......+ .. +....+.++...+.+++|+........+.............+.-.... ...+.+... .
T Consensus 206 ~~~~~p~~~~~~~~~--~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft-~~~~~n~~~~~ 281 (461)
T KOG3098|consen 206 NFDFLPSKDVVNCKS--SS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFT-RKLGSNTTYLI 281 (461)
T ss_pred heeecCccchhhhhh--hc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhh-hhccCcchhHH
Confidence 111222211111111 11 124556667777888888776665544433221111111111100000 002333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---ccCCChHHHHHHHHHHHHhhhhhHHHhhh-cc-------cccCCCchhhhhHHHH
Q 037870 316 GLIYALGAVASMIGVLIYHKTL---KDYPLRNLLFSAQLLYGISGMLDLIFILR-WN-------LALGIPDSFFVITEQC 384 (511)
Q Consensus 316 g~~~~~~~~~~~~~~~~~~~l~---~r~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~ 384 (511)
++.....+++.++++...+.+. ||+|++..+.++..+..+.+++...-.+. .+ .....+.....++...
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 3334566777777776666665 45678887777765555433322211110 00 0001122233444445
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Q 037870 385 VSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGG 433 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g 433 (511)
+.++.-+......++.+.... ++.+..+++++-.-..+++.++-....
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 666666666666667777777 477777777777777777666555444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-07 Score=92.53 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=81.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
++|+|..+.+.+...+...+ ...+..|++.||+|+|+++.++.++..++.+...+... ... .++.+.+.+..++.
T Consensus 56 ~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~---~~i-~~s~~~l~l~r~l~ 130 (591)
T PTZ00207 56 RYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQ---EVI-EGSVVRLSVYNGLM 130 (591)
T ss_pred HhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc---ccc-cCcHHHHHHHHHHH
Confidence 37999999998875543333 34556899999999999999998777765443322111 000 12333333334455
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIV 435 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l 435 (511)
+...+...+.....+.+.+| ++||++.|+......+|+.+.+.+...+
T Consensus 131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556566666677788887 7889999999999999998644444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-07 Score=86.96 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=108.3
Q ss_pred cchhhhhhhhhhcccC-CChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc-CCh
Q 037870 75 SFSKVVTDYYWKDVQK-VQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL-GKL 151 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g-~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~-~~~ 151 (511)
.......+.|+++ .| .+....|.+.++..+.=+. -.+.+++..|+ +-|+++.++.+..++=+.+++.. ++.
T Consensus 224 ~~~~~f~~~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-----g~~~ll~~a~~~~~vR~~l~a~~~~~~ 297 (400)
T PF03825_consen 224 AAYYTFFSIYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-----GIKWLLLLALVAYAVRWLLYAYFSDPW 297 (400)
T ss_pred HHHHHHHHHHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3444556777887 66 7777777666555443222 34567777775 56778888888888878888776 433
Q ss_pred hHHH--HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHH-HHHHHHHHHHHHHHhhccCChhh------
Q 037870 152 PIAI--ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFC-SAAGSLIGYAVSGFSVNHLGPQG------ 222 (511)
Q Consensus 152 ~~~~--~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~lg~~~~g~l~~~~gw~~------ 222 (511)
+... .+..-.+.|+..+........++.+..| ++.|++.++++... .++|..+|..++|++.+++|-+.
T Consensus 298 ~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p--~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~ 375 (400)
T PF03825_consen 298 PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP--PELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA 375 (400)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC--ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence 3211 1122346888888888888888888874 46689999988764 57999999999999999877554
Q ss_pred HHHHhhhHHHHH-HHHHhhcccc
Q 037870 223 ALGVLAIPPVLL-IVLGFVIYET 244 (511)
Q Consensus 223 ~f~~~~~~~~i~-~~~~~~~~e~ 244 (511)
.+.+.++..++. .+.+++.||+
T Consensus 376 ~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 376 VFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC
Confidence 444454444442 3344445544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.5e-07 Score=84.06 Aligned_cols=142 Identities=10% Similarity=0.004 Sum_probs=101.2
Q ss_pred hhhhhhhhhhcc--cCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhH
Q 037870 77 SKVVTDYYWKDV--QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPI 153 (511)
Q Consensus 77 ~~~~~~~~~~~~--~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (511)
...+.+.|+++. +|.++.+.++..+.+..++.+ ..+.++++||+ ++|+.+.++.++.+++.++....++..
T Consensus 159 ~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-----g~~~~l~~~~~l~~~~~~l~~~~~~~~- 232 (310)
T TIGR01272 159 AGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-----SQGRYLAFNAFLAVLLSIGAALTHGYV- 232 (310)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHcCCHH-
Confidence 355788888753 699999999999999998888 78899999997 455566666666666665555544322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIP 230 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~ 230 (511)
.....++.+++.+...+...+...+..+++ .+++.++. ....+|..++|++.|.+.|..|.+..|++..+.
T Consensus 233 --~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~---~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 233 --AMWFVLALGLFNSIMFPTIFSLALNALGRH---TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 122344667887777777776666655432 23444554 567799999999999999999999888755433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-05 Score=69.16 Aligned_cols=305 Identities=12% Similarity=0.079 Sum_probs=157.5
Q ss_pred cccCCChHHHHHHHHHhhcch-hhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHH
Q 037870 87 DVQKVQPSVVQIYIGLCYLPS-VMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLG-KLPIAIALACSVGIS 164 (511)
Q Consensus 87 ~~~g~s~~~~g~~~s~~~l~~-~~~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 164 (511)
+.+|+...++|.+.-...-.. .++.+.|.++|+- +||+--+ ..++..+++.+.. +.....++++|.+.|
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-----GRKracv----tycitYiLsCiTKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRACV----TYCITYILSCITKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhh-----cccccee----eehHHHHHHHHhhcCCceEEEeehhhhhh
Confidence 338888888886654443333 3488999999995 4554333 2333333333322 212233678899998
Q ss_pred HHHHHHHHHHhHHHhhcchhhhccccchHHHHH--------HHHHHHHHHHHHHHHHhhccC--ChhhHHHHhhhHHHHH
Q 037870 165 AGIAIADVVIDACIARNSIEIRALAPDMQSLCG--------FCSAAGSLIGYAVSGFSVNHL--GPQGALGVLAIPPVLL 234 (511)
Q Consensus 165 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--------~~~~~G~~lg~~~~g~l~~~~--gw~~~f~~~~~~~~i~ 234 (511)
+..+....+..++.. .++.++|+.-+.+.. .+..+-.+++.+.+..+.+++ |.-.+|-..+++..+.
T Consensus 136 iaTsLLFSaFEsWli---aEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig 212 (454)
T KOG4332|consen 136 IATSLLFSAFESWLI---AEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG 212 (454)
T ss_pred HHHHHHHHHHHHHHH---HHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 888777666555442 223334554443332 233344556666666677765 4556676655544442
Q ss_pred -HHHHhhcccccccccchhhhhhhhhHHHHHH-HHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCCh
Q 037870 235 -IVLGFVIYETRSANIRSEKKKVMENVEFTTK-GMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQ 312 (511)
Q Consensus 235 -~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 312 (511)
.++.--..|.-.++.++ + +.....+ ....+..++++... ..+...+-...++..+.|.+... .+-..
T Consensus 213 mAvil~~W~ENygdps~~--k----dlltqf~gaa~aiaSD~ki~LL---G~iqsLFE~smytFVFLWTPaLs--pn~e~ 281 (454)
T KOG4332|consen 213 MAVILSSWSENYGDPSEN--K----DLLTQFKGAARAIASDEKIALL---GAIQSLFEGSMYTFVFLWTPALS--PNDEE 281 (454)
T ss_pred HHHHHhhhhhccCChhhh--H----HHHHHhhHhHHHHhcchHHHHH---HHHHHHHhhhhheeeeeecccCC--CCccc
Confidence 22222222322221111 1 1111111 22334445543332 22222222233334445554431 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCh--HHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHH
Q 037870 313 EFVGLIYALGAVASMIGVLIYHKTLKDYPLR--NLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIIS 390 (511)
Q Consensus 313 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
.--|.++....+++++|+-+..|+..|-..| ..+.+..++.+...++.+.... .... -......+++.++...+.
T Consensus 282 iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-vsP~--kes~~~s~i~F~~~E~cv 358 (454)
T KOG4332|consen 282 IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-VSPS--KESPSESLIGFCLFEACV 358 (454)
T ss_pred CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-cCCC--cCCchHHHHHHHHHHHHH
Confidence 2246777788888999999988887765433 3444443333332222221111 1111 112223344455667788
Q ss_pred HhhHhHHHHHHhhcCCCcchHHHHHHH
Q 037870 391 KIRWIPMIVLSTRLCPIGIEGTFFALL 417 (511)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~g~~~gl~ 417 (511)
|..++.++-+-.+..|++.|.+.+-.+
T Consensus 359 GlfwPSimkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 359 GLFWPSIMKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred hhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence 888888888889999999998775443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-07 Score=91.41 Aligned_cols=144 Identities=17% Similarity=0.249 Sum_probs=107.5
Q ss_pred ccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 037870 72 FSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGK 150 (511)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~ 150 (511)
+.........+++.++.+|.+ ...+.+..+..++..+ .|++++++||+ +||+.+..+.++.+++.+++.+.+.
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-----gk~~~~~~~~~~~~~~~~~~~~~~~ 312 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-----GKKKVYIIGLLLAALGFLLLFFLGP 312 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-----cceeehhhhHHHHHHHHHHHHHHHh
Confidence 333344555677777767766 5566677777777666 89999999996 5777888888888888888777762
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhh-----ccccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 037870 151 LPIAIALACSVGISAGIAIADVVIDACIARNSIEIR-----ALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQ 221 (511)
Q Consensus 151 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~ 221 (511)
.+....++..++.+++.+.......++++|..+.++ ++.|...+.......+|..+++.+.|.+.+..|+.
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 233446677778899988888888999998876432 33577788888999999999999999887665543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.2e-07 Score=78.78 Aligned_cols=136 Identities=11% Similarity=0.100 Sum_probs=94.7
Q ss_pred hhhhhhhcccCCChHHHHHHHHHhhcc-hhhhhHHHhhhcccccCCCCCc-hHHHHHHHHHHHHHHHHHhcCChhHHHHH
Q 037870 80 VTDYYWKDVQKVQPSVVQIYIGLCYLP-SVMKPIWGLFTDAFPIKGYHRR-PYFVIAGVAGCVSALMFSLLGKLPIAIAL 157 (511)
Q Consensus 80 ~~~~~~~~~~g~s~~~~g~~~s~~~l~-~~~~~~~G~l~D~~~~~g~~Rr-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (511)
.-|.++++++|+|+...+-+.+....- ....|+.|.++|++ +|+ +++..+.+.+.++-....++.-.+ .
T Consensus 286 lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-----G~n~~wv~~a~~~tl~~H~~l~Ft~lsP----y 356 (459)
T KOG4686|consen 286 LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-----GFNLWWVASACILTLLGHSGLFFTFLSP----Y 356 (459)
T ss_pred hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-----cceehhHHHHHHHHHHHhhhHHhhhccH----H
Confidence 345567778999999998877765544 44499999999996 454 444445555555544444432111 2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC---hhhHHHH
Q 037870 158 ACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG---PQGALGV 226 (511)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g---w~~~f~~ 226 (511)
....+.|+...........+++.+.++++ .|++.+..+...++|-.+.|+++|++.++-| |--+|.+
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~q--LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl 426 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQ--LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFL 426 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHH--hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHH
Confidence 33455677766666666777777776544 8999999999999999999999999998765 4444444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-06 Score=86.32 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=85.3
Q ss_pred hhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037870 82 DYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACS 160 (511)
Q Consensus 82 ~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (511)
+++.+..++ ++...+.+.....++..+ .+++++++||+ +||+.+..+.+..++......+.+......+++..
T Consensus 253 ~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (444)
T PRK09669 253 LYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-----DRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALN 326 (444)
T ss_pred heeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 444443333 233334444444555555 68899999996 56666666655444433333333222333345556
Q ss_pred HHHHHHHHHHHHHHhHHHhhcchhhh-----ccccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 037870 161 VGISAGIAIADVVIDACIARNSIEIR-----ALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220 (511)
Q Consensus 161 ~l~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw 220 (511)
++.+++.+...+...++++|..+.++ +..|...+.......+|..+|+.++|.+.+..|+
T Consensus 327 ~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 327 ILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67888888888888999988875322 2235567788888899999999999999887766
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.3e-06 Score=86.50 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=110.3
Q ss_pred hhhhhhcccCCChHHHHHHHHHh-hcchhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCCh------hH
Q 037870 81 TDYYWKDVQKVQPSVVQIYIGLC-YLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKL------PI 153 (511)
Q Consensus 81 ~~~~~~~~~g~s~~~~g~~~s~~-~l~~~~~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~------~~ 153 (511)
+..|+.+.+|.+.++...+...+ .+.+....+.|.++|++ ++|++.++++.++..++..++++.... ..
T Consensus 10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~----lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~ 85 (654)
T TIGR00926 10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW----LGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD 85 (654)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence 34445556898888776665554 34455577799999997 478888888888888888777664211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhh-hccccchHHHHHHHHHHHHHHHHHHHHHhhcc-------CChhhHHH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEI-RALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH-------LGPQGALG 225 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~-------~gw~~~f~ 225 (511)
...+++..+.++|.+..-+...++..|..+++ +++|-+...+++.+.++|+++++++.+++.+. .+|...|.
T Consensus 86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~ 165 (654)
T TIGR00926 86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG 165 (654)
T ss_pred HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence 22445566777788877778888888776432 34578889999999999999999999988743 36999999
Q ss_pred HhhhHHHHHHHH
Q 037870 226 VLAIPPVLLIVL 237 (511)
Q Consensus 226 ~~~~~~~i~~~~ 237 (511)
+.++..++..++
T Consensus 166 i~~i~m~ia~lv 177 (654)
T TIGR00926 166 VPAILMILALIV 177 (654)
T ss_pred HHHHHHHHHHHH
Confidence 988877775443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=87.22 Aligned_cols=160 Identities=14% Similarity=0.191 Sum_probs=117.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
++.++...+++.+.++..++.+++.+..+.+.||++..+.+....++..+.+++... ..+....+...++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~----------~~s~~~~ialr~l 143 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA----------VHSFPGLIALRFL 143 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH----------HhhhHHHHHHHHH
Confidence 457788889999999999999999999999999999777776665555432222111 1123344555668
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH-HH
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLA-TL 464 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~ 464 (511)
.+++.+..+++...++.....++++|+.+|++.+..++|+++|+.+...+.+.-|. ....++.+.|++.+++.+. ++
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~--~~~~gW~~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS--GGLAGWRWLFIIEGVITLVLGI 221 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC--CCcCCceeehhHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999998887663331 2233455666666666544 44
Q ss_pred HHHhhcCCCCcCc
Q 037870 465 GLIFLVPKADQSD 477 (511)
Q Consensus 465 ~~~~~~~~~~~~~ 477 (511)
+..+++|+...+.
T Consensus 222 ~~f~~lp~~P~~~ 234 (495)
T KOG2533|consen 222 VVFFFLPDNPSKA 234 (495)
T ss_pred eEEEEecCChhhc
Confidence 4445788766544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.5e-06 Score=83.81 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=89.5
Q ss_pred hhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh---cCChhHHH
Q 037870 80 VTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL---LGKLPIAI 155 (511)
Q Consensus 80 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~---~~~~~~~~ 155 (511)
..+++.+...+ +....+++.+...++..+ .|++++++||+ +||+.+..+.++.+++.+...+ .++.....
T Consensus 253 ~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
T PRK10429 253 FAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-----SRRILWAGASIFPVLSCGVLLLMGLAAPHNALL 326 (473)
T ss_pred heeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence 44555554333 455666666655566555 88999999996 5666766666655544444322 22222333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhh-----ccccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIR-----ALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw 220 (511)
+++..++.+++.+.......+++.|..+.++ +..|...+.......+|..+|+.+.|++.+..|+
T Consensus 327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455566778888888888889988876432 2234478888888999999999999999876665
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-05 Score=70.54 Aligned_cols=177 Identities=16% Similarity=0.072 Sum_probs=108.9
Q ss_pred chhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhhhhHHHhhhcccccCCCCCchHHHHHH
Q 037870 56 STFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAG 135 (511)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~l~D~~~~~g~~Rr~~l~~~~ 135 (511)
|..+.+..... ...|..+.+ ..+.|. +++.+|.|.+|...+.....++..++.+.|.+.|++ +-+..+.++.
T Consensus 2 W~~l~a~~~v~-~~~Gt~Y~F-s~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~-----gp~~~l~iG~ 73 (250)
T PF06813_consen 2 WLSLVASIWVQ-LCSGTTYTF-SAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRF-----GPWVVLLIGA 73 (250)
T ss_pred hhhHHHHHHHH-HhcCcccch-hhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhc-----chHHHHHHHH
Confidence 43333333333 445544433 444444 466699999999999998889877899999999996 5677788888
Q ss_pred HHHHHHHHHHHhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHH
Q 037870 136 VAGCVSALMFSLLG-----KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAV 210 (511)
Q Consensus 136 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~ 210 (511)
+...++...+.++- +.+.+.+.+..++.+.+....+++.-....+.. |++||++.++.-....+++.+-..+
T Consensus 74 ~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF---P~~RG~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 74 VLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF---PRSRGTVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred HHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC---ccccCceehhhhHHHHhHHHHHHHH
Confidence 88888887776532 123344455555666665555443322223333 4569999998888888877765555
Q ss_pred HHHhhccCChhhHHHHhhhHHHH-HHHHHhhcccc
Q 037870 211 SGFSVNHLGPQGALGVLAIPPVL-LIVLGFVIYET 244 (511)
Q Consensus 211 ~g~l~~~~gw~~~f~~~~~~~~i-~~~~~~~~~e~ 244 (511)
...+.+. +-...+.+.+....+ .++..+++++.
T Consensus 151 ~~~~f~~-~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 151 YSAFFGD-DPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHcCC-ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 5444443 333334444444433 34444555543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-05 Score=76.22 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=110.7
Q ss_pred hhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037870 82 DYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACS 160 (511)
Q Consensus 82 ~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (511)
..|-++++|++..++.++.....+..++ ..++|++.||+ +-|+++..+.++..+.++..-+... .. .+.+..
T Consensus 276 ~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-----g~k~vl~~~lvi~~~~~~~~~~~~~-~~-~f~i~g 348 (438)
T COG2270 276 GVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-----GSKPVLMIGLVILSIAALYLIFLEG-EL-DFWILG 348 (438)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCceeehHHHHHHHHHHHHHHHccc-cH-HHHHHH
Confidence 4455667999999998877776666666 78899999997 4456666666666655555444332 21 133444
Q ss_pred HHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHhhhHHHHHHHHHh
Q 037870 161 VGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-PQGALGVLAIPPVLLIVLGF 239 (511)
Q Consensus 161 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-w~~~f~~~~~~~~i~~~~~~ 239 (511)
++.|...+......-++..+..|+ ++-++.+|+++.....++.+||.+-+.+.+.+| -|.-+....++.++.+++.+
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~--~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPK--GKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCC--ccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 566777777888888999999854 556888999999999999999999999987665 56666655555555555666
Q ss_pred hccccc
Q 037870 240 VIYETR 245 (511)
Q Consensus 240 ~~~e~~ 245 (511)
..|++.
T Consensus 427 ~v~~~~ 432 (438)
T COG2270 427 RVKVPG 432 (438)
T ss_pred eecCCC
Confidence 666553
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-05 Score=75.57 Aligned_cols=124 Identities=12% Similarity=-0.049 Sum_probs=97.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
++.+..+.+++......+..+.+...+++.+|+|+|+-+..+..++++++.+..-... .....+.++..++.+
T Consensus 43 f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~-------~~~y~~FL~~lFila 115 (422)
T COG0738 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS-------SKSYGFFLVALFILA 115 (422)
T ss_pred hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh-------hhhHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999998888876554321111 112223344434445
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
.+.+..-...+.+++.+-|++....-+.+.+.++.+|..++|.+++.+...
T Consensus 116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 555556666677888888888888999999999999999999999998873
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.2e-06 Score=78.72 Aligned_cols=156 Identities=9% Similarity=0.100 Sum_probs=108.9
Q ss_pred hhhhhhcc---cCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 037870 81 TDYYWKDV---QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIA 156 (511)
Q Consensus 81 ~~~~~~~~---~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (511)
.+.|.+.. -+.+....|.+.++..+.=++ -.+..++.+|+ +-|+.++++..++.+=..+++++++... .
T Consensus 243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-----g~k~~Lllag~i~~iRi~~~~~~~~~~~--i 315 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-----GAKNLLLLAGVIMAIRIIGSGFATNPWV--I 315 (412)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHT--SHHH--H
T ss_pred HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-----ChHhHHHHHHHHHHHHHHHHhhhcchHH--H
Confidence 45555442 234556677777766554333 45567788886 5577788888888888999999987554 5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHH-HHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHH-
Q 037870 157 LACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLC-GFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLL- 234 (511)
Q Consensus 157 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~- 234 (511)
.....+.++-.+.......-++.+..++ +..++.+.+. +...++|..+.+.++|.+.|+.|.+.+|++++.+.++.
T Consensus 316 ~~~klLH~~e~~l~lva~fkYI~~~fd~--rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~ 393 (412)
T PF01306_consen 316 SLIKLLHALEFPLLLVAAFKYITAHFDK--RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFT 393 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-G--GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCH--hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHH
Confidence 6678888888888888888888877643 3345666653 57788999999999999999999999999988877664
Q ss_pred HHHHhhccccc
Q 037870 235 IVLGFVIYETR 245 (511)
Q Consensus 235 ~~~~~~~~e~~ 245 (511)
++..+.+++++
T Consensus 394 li~~f~l~~~~ 404 (412)
T PF01306_consen 394 LISAFTLKKDK 404 (412)
T ss_dssp HHHHHHS--SS
T ss_pred HHheeeecCCC
Confidence 44555565443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-08 Score=102.60 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHH
Q 037870 311 SQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIIS 390 (511)
Q Consensus 311 s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
+..+.++..+...++.++|+++.|.+.||+|||+.+..+.++..++.++...... ..+.+......++.++..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~R~~~G~~~ 116 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS-------YNNFWMLLIGRFLIGFGI 116 (451)
T ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc-------cccccccccccccccccc
Confidence 4456777888999999999999999999999999999887666654333221110 012233334445667777
Q ss_pred HhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037870 391 KIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIV 435 (511)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l 435 (511)
+........++.|.+|+++||...++.+....+|..++..++-.+
T Consensus 117 g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 117 GGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777788888899999999999998888887777777776665433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-06 Score=79.59 Aligned_cols=165 Identities=12% Similarity=0.141 Sum_probs=111.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCC-c-hhhhhHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIP-D-SFFVITEQCV 385 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 385 (511)
-++++...+.+..+..+|.++|.++.|++.||+|||+++....++++++.+ ...+.. ....+ . .+++...-.+
T Consensus 79 g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~-~~~~s~----~~~~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 79 GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA-LSGLSV----GTTSPLGVMMTLCFFRFL 153 (538)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH-HhccCC----CCCCCcchhhHHHHHHHH
Confidence 457888888899999999999999999999999999999988777776544 111111 11122 1 1223334556
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc----cC--CCCccchH-HHHHHHHH
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH----VT--RTDFTNLW-LVILIRNV 458 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g----~~--~~~~~~~~-~~~~~~~~ 458 (511)
.+++.|.-++...+..+|.+.++.||+..+...+++..|...|..++-.+...+- .. .......| ..+.+.++
T Consensus 154 LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~v 233 (538)
T KOG0252|consen 154 LGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAV 233 (538)
T ss_pred hhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Confidence 6777777788778888999999999999988888888887777766665554432 11 01112233 34455555
Q ss_pred HHHHHHHHHhhcCCCCcCc
Q 037870 459 LRLATLGLIFLVPKADQSD 477 (511)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~ 477 (511)
-+++.+.+-+..||+++.+
T Consensus 234 pa~~~ly~Rl~M~Et~~Y~ 252 (538)
T KOG0252|consen 234 PALLVLYFRLKMPETARYT 252 (538)
T ss_pred HHHHHHHhhhcCCcchhHH
Confidence 5566556556788877655
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.9e-05 Score=75.83 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=107.0
Q ss_pred cchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhH
Q 037870 75 SFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPI 153 (511)
Q Consensus 75 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (511)
.+......+|.+..+|-+.....+.......+..+ .+++-++++|+ +||+.+.++.++.+++.+++.+.+....
T Consensus 253 ~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-----gkk~~~~~~~~~~~i~~~~~~f~~~~~~ 327 (467)
T COG2211 253 NIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-----GKKKLFLIGLLLLAVGYLLLYFTPAGSV 327 (467)
T ss_pred HHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence 34455567776666777777776666666666666 68899999996 6888888999999999999988885556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhh-----ccccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIR-----ALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw 220 (511)
...++..++.++|.+...+...++++|..+..+ +.-|...+......-+|..++..+.|++....|+
T Consensus 328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 666777788899999999999999988875321 2345566777777789999999888888765554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.2e-05 Score=79.45 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=95.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
.+.+.....+..++..+|.++|.++.|.+.||+|||+++..+.++..+..+.... .++....++.-++.+
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~----------a~~~~~~~~~Rfl~G 182 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF----------APNYWMFLIFRFLSG 182 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH----------hCcHHHHHHHHHHHH
Confidence 4556667777778999999999999999999999999999998777764432211 234555566667778
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
++.+........+..|+.++++|+.+..+ ......+..+++..++++.+
T Consensus 183 ~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 183 FFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred hhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 77777777888889999999999999998 77888888888888888876
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-05 Score=69.47 Aligned_cols=132 Identities=12% Similarity=0.035 Sum_probs=84.5
Q ss_pred eeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhh
Q 037870 299 YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFF 378 (511)
Q Consensus 299 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (511)
.|.++.++.+|+|+++...+.....+|..+| +..|.+.|++|.+..+.++.+...++......... + ....+..+.
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~--~-~i~~~~~~~ 98 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVS--G-RIPSLPVWL 98 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh--C-ccCccchHH
Confidence 4444444568999999999988888888876 77899999999999999887777765543322222 1 111122222
Q ss_pred hhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037870 379 VITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIV 435 (511)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l 435 (511)
......+.+...............+.+| ++||++.|+.-....+++.+-..+.-.+
T Consensus 99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 99 MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 2222222222222333344444557888 6899999998888888887766554444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.3e-05 Score=78.99 Aligned_cols=144 Identities=14% Similarity=0.163 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHh
Q 037870 313 EFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKI 392 (511)
Q Consensus 313 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
.+.+++.+...++..++.++.|++.|++|||+.+..+.+...++.++.... ++....+.+-++.+++.+.
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a----------~~~~~l~~GR~l~G~g~G~ 158 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA----------PSWYQLIVGRILTGLGVGG 158 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhccchhh
Confidence 355788899999999999999999999999999999987777654433211 2344556677788888888
Q ss_pred hHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHhhcCC
Q 037870 393 RWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPK 472 (511)
Q Consensus 393 ~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (511)
.......+++|++|++.||...+..+....+|..++ .+.+...+.. . ..+...+.+..+.+++..+.++.+||
T Consensus 159 ~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~-----~-~~Wr~~~~~~~i~~~~~~~~~~~~pe 231 (513)
T KOG0254|consen 159 ASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKV-----Y-AGWRIPLGLALIPAVILALGMLFLPE 231 (513)
T ss_pred hhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccC-----C-ccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888888999999999999999999888888777777 3333333211 0 12333444444444444444567775
Q ss_pred C
Q 037870 473 A 473 (511)
Q Consensus 473 ~ 473 (511)
.
T Consensus 232 s 232 (513)
T KOG0254|consen 232 S 232 (513)
T ss_pred C
Confidence 4
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0002 Score=72.09 Aligned_cols=134 Identities=12% Similarity=0.008 Sum_probs=76.8
Q ss_pred hhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 037870 81 TDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALAC 159 (511)
Q Consensus 81 ~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (511)
..++.+..+|. ....+.+...+.++..+ .+++++++||+ +||..+..+.....+..++..+.++.......+.
T Consensus 251 ~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-----gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (460)
T PRK11462 251 MMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-----CKVTIFWWTNALLAVISLAMFFVPMQASITMFVF 324 (460)
T ss_pred hhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 44444443443 33445555566666555 78899999996 4555544333333332333333333222222333
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcchhh---hccc--cchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 037870 160 SVGISAGIAIADVVIDACIARNSIEI---RALA--PDMQSLCGFCSAAGSLIGYAVSGFSVNHLGP 220 (511)
Q Consensus 160 ~~l~~~g~~~~~~~~~~~~~~~~~~~---~~~r--~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw 220 (511)
.++.+++.+...+...++++|..+.+ ..+| |...+.......+|..+|+.++|.+.+..|+
T Consensus 325 ~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 325 IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44556666666666677777776532 2233 3334666678889999999999998766555
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00022 Score=65.69 Aligned_cols=348 Identities=13% Similarity=0.116 Sum_probs=170.9
Q ss_pred chhHHHHHHHHhhcccccccchhhhhhhhhh-cccCCChHHHHHHHHHhhc---chhhhhH-HHhhhcccccCCCCCchH
Q 037870 56 STFIFGIILVYGLSQGFSGSFSKVVTDYYWK-DVQKVQPSVVQIYIGLCYL---PSVMKPI-WGLFTDAFPIKGYHRRPY 130 (511)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~l---~~~~~~~-~G~l~D~~~~~g~~Rr~~ 130 (511)
|.-+.++.+.||+...+.= . -+.+.+|+. .+.+++..++. .-++-+ .+.++.+ .=.+.|.. |-||+
T Consensus 4 W~~~~~llC~yG~~~e~RP-s-eP~~tpyl~gp~~NlT~~~l~--~evyPvwTYSYLv~LvpvFlLTD~l-----rYKPv 74 (433)
T KOG3810|consen 4 WLKITCLLCLYGFVREFRP-S-EPYLTPYLLGPDKNLTEDQLT--NEVYPVWTYSYLVGLVPVFLLTDYL-----RYKPV 74 (433)
T ss_pred hhhhhhhhhhhhHHHHhCC-C-CCccchhccCCCCCccHHHHh--cccccchhHHHHHHHHHHHHHhhhh-----hccee
Confidence 4333456666766655542 1 223333333 45677777653 111111 1112111 22577875 77998
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHH
Q 037870 131 FVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAV 210 (511)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~ 210 (511)
++.-.+.....+.+.-+.++......+= +.-|.. ..+.++..+++-... +|+++-++.+......-.|...|..+
T Consensus 75 ivlq~ls~v~~w~~lv~g~sV~~mQvlE--~FyG~~-tAaEIAYysYIYs~V--d~~~Yqrvt~y~RaA~L~g~~~g~vl 149 (433)
T KOG3810|consen 75 VVLQALSGVPVWIMLVFGPSVKAMQVLE--FFYGPA-TAAEIAYYSYIYSKV--DPEMYKRVTGYCRAAFLVGKFVGSVL 149 (433)
T ss_pred eeeeccchhHHHHHHHhcCCchheeeeh--hhcChH-HHHHHhhhheeeeec--CHHHHHHHHHHhHHHHHHHhHHHhHH
Confidence 8877666666666666666544211111 111221 122344445554444 44556777787777777888888887
Q ss_pred HHHhhcc--CChhhHHHHhhhHHHHHHHHHhhcccccccc----cch-------hh---h-hhhh----hHHHHHHHHHH
Q 037870 211 SGFSVNH--LGPQGALGVLAIPPVLLIVLGFVIYETRSAN----IRS-------EK---K-KVME----NVEFTTKGMYK 269 (511)
Q Consensus 211 ~g~l~~~--~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~----~~~-------~~---~-~~~~----~~~~~~~~~~~ 269 (511)
+-.++.. .++...-.+.-....+..+..+++|..++.. .++ ++ + +..+ ......+++..
T Consensus 150 aQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~ 229 (433)
T KOG3810|consen 150 AQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQE 229 (433)
T ss_pred HHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHH
Confidence 7776543 2333333333222233344555666444211 000 00 0 0001 11222345556
Q ss_pred hccCCcchHHHHHHHHHhhhccCcc-cceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHH
Q 037870 270 SMKCPQVWKPSLYMYLSLAVSISTH-EGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFS 348 (511)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~ 348 (511)
..+||.++...+...+.....+... .....|....+ +-....-|..-.+..+.+.++.+..|.+--++.+..-+.+
T Consensus 230 ~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~---~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll 306 (433)
T KOG3810|consen 230 CYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAP---NPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLL 306 (433)
T ss_pred HhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCC---CchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHH
Confidence 6788988777776655544333221 11222322211 1122233444456666777788888888766665533333
Q ss_pred HHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHH
Q 037870 349 AQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTS 428 (511)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g 428 (511)
+.....-++++ +.+....+ .|+.....++....+.+.......-+++...++.-|..+|+.+++.-+-..+-
T Consensus 307 ~~~s~~~agll-f~m~~t~~-------Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsil 378 (433)
T KOG3810|consen 307 AVGSAVQAGLL-FIMAQTQH-------IWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSIL 378 (433)
T ss_pred HHHHHHhhhhh-hhhhcccc-------eehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhh
Confidence 32222222222 12222112 23333333455555555555555556666677888899988776655444443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=76.80 Aligned_cols=190 Identities=13% Similarity=0.002 Sum_probs=118.1
Q ss_pred HhccCCcc-hHHHHHHHHHhhhccCcccceeeeeec-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC-CChHH
Q 037870 269 KSMKCPQV-WKPSLYMYLSLAVSISTHEGQFYWYTD-PKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY-PLRNL 345 (511)
Q Consensus 269 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~ 345 (511)
+.+++|+- +.+...-+.-.+.+++....+.+|... ..+++|+|.++...++..+..-.-+...++|+++||+ |+|+.
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 45565543 333333344555556555444444333 3344789998887777666655666677889999984 89999
Q ss_pred HHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCc--chHHHHHHHHHHHHH
Q 037870 346 LFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIG--IEGTFFALLMCIDSI 423 (511)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~gl~~~~~~l 423 (511)
+.++.++..++.+...... ..+.. .+.+.. .+...+.|..=+....++.|+.|++ +|-..++++-...|+
T Consensus 95 I~lGail~~iGh~~L~~~~-----~~~~~--gl~i~L-~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNi 166 (498)
T COG3104 95 IVLGAILMAIGHLVLAISS-----VSGPG--GLYIGL-ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINI 166 (498)
T ss_pred HHHHHHHHHHHHHHHhccc-----ccccc--HHHHHH-HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeeh
Confidence 9998877776544322110 00111 122222 2233444555555667777776653 245567777788899
Q ss_pred HHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHhhcCCCC
Q 037870 424 GSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIFLVPKAD 474 (511)
Q Consensus 424 g~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
|+.++|.+.+++.+.+|+ ...|..+++...++++.....++.-
T Consensus 167 Gsl~~p~i~~~~~~~~g~--------~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 167 GSLIAPIITGLLAINYGW--------HVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHHHHHHHHHHHHhhCH--------HHHHHHHHHHHHHHHHHHHHccchh
Confidence 999999999999998773 3567777777777777776666543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00011 Score=71.98 Aligned_cols=124 Identities=13% Similarity=0.061 Sum_probs=85.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCC-hHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPL-RNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
.+-+.+..|++.+...++.+++.+..+.+..|.+. |+-++.+.++++++.+.++.+.... ....++.+..-++.
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-----~~~~y~mL~~R~l~ 140 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-----NGVKYLMLVARILT 140 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHc
Confidence 67788899999999999999999999999988875 7777778777887777765443311 11233444444444
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
+++.+ .....-.+++...-.+.|-++++..+....+|..+||.+...+..
T Consensus 141 Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 141 GVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred CcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 43322 233445666666556777778888777777888888877765543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.8e-05 Score=74.74 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=103.2
Q ss_pred cccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc----------CChhHHH
Q 037870 87 DVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL----------GKLPIAI 155 (511)
Q Consensus 87 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~ 155 (511)
+.+|.++.++|.+.+...++..+ ..+.+++.+|+ +.|+.+.++.++.+++.+..... ++. ..
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-----~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~--~~ 353 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-----PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDE--VF 353 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCe--ee
Confidence 45899999999998888777666 77788887775 56777777777777665443211 221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-----hhhHHHHhh--
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-----PQGALGVLA-- 228 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-----w~~~f~~~~-- 228 (511)
.....++.+++.+....+...++.+..+ ++.+++.+++.++..++|..+++.++|.+.++.| ++..+....
T Consensus 354 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p--~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~ 431 (468)
T TIGR00788 354 VLGDSIIAEVLAQLKFMPFLVLLARLCP--SGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGH 431 (468)
T ss_pred eeehhHHHHHHHHHHHccHHHHHHHhCC--CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence 2333556777777888788888888874 4568999999999999999999999999988776 544433322
Q ss_pred -hHHHHHHHHHhhccc
Q 037870 229 -IPPVLLIVLGFVIYE 243 (511)
Q Consensus 229 -~~~~i~~~~~~~~~e 243 (511)
+..++.+...+++|+
T Consensus 432 ~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 432 SLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 223333334446785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00031 Score=66.23 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=103.3
Q ss_pred chhhhhhhhhhcccCCCh--HHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChh
Q 037870 76 FSKVVTDYYWKDVQKVQP--SVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLP 152 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~--~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~ 152 (511)
......+.+..+ .+.+. .+.++..+...++..+ .+++|.++||+ +||+.++.+.....++.+.+++.++..
T Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (338)
T COG0477 20 LLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-----GRRKVLIIGLLLFLLGTLLLALAPNVG 93 (338)
T ss_pred hHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-----cchHHHHHHHHHHHHHHHHHHhCccch
Confidence 333445555554 55555 5788888888888777 68999999996 455666666554455555566655522
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHH-HHHHHHHHHHHHHHHhhcc--CChhhHHHHhhh
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGF-CSAAGSLIGYAVSGFSVNH--LGPQGALGVLAI 229 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~lg~~~~g~l~~~--~gw~~~f~~~~~ 229 (511)
...++..++..+++.+...+...+++.+..++ ..+|+...+.... ...+|..+++.+++.+... .+||..|.+...
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPE-ATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAAL 172 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33456667778888888888888888888754 1357777777777 5778888998888777654 679987666555
Q ss_pred HHHH
Q 037870 230 PPVL 233 (511)
Q Consensus 230 ~~~i 233 (511)
....
T Consensus 173 ~~~~ 176 (338)
T COG0477 173 LGLL 176 (338)
T ss_pred HHHH
Confidence 4433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0018 Score=60.77 Aligned_cols=123 Identities=11% Similarity=0.142 Sum_probs=83.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|++..+++.++..+.+.+.+...+.|.+.||+|||+.-+.-+++..+.++.. ..++....+.+-++.+
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-----------~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-----------HSSNYPVLLLGRVLGG 132 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-----------hccccHHHHHHHHHHH
Confidence 79999999999999999999999999999999999998887766666544321 1344444555555555
Q ss_pred HHHHhhHhHHH-HHHhhc----CCCcchHHHHHHHHHH-HHHHHhHHHHHHHHHHHHhcc
Q 037870 388 IISKIRWIPMI-VLSTRL----CPIGIEGTFFALLMCI-DSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 388 ~~~~~~~~~~~-~~~~~~----~p~~~~g~~~gl~~~~-~~lg~~~g~~l~g~l~~~~g~ 441 (511)
+...+.+...- .++.|+ .|++..+..++..... +.+..++++.++-++++..+.
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~ 192 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF 192 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence 55555444432 345554 4555566777766633 345556667777777776654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00018 Score=66.93 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=87.0
Q ss_pred HHHHHhhcchhhhhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037870 98 IYIGLCYLPSVMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDAC 177 (511)
Q Consensus 98 ~~~s~~~l~~~~~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 177 (511)
++++..-.|. ..+.+++.||+ +||+.|..+.++++++.++...+.+... +.+..+...+......-+.+.+
T Consensus 388 litslaefPG--lLIt~~iverl-----GRKkTMal~l~~f~iflfll~~c~~rn~--~tvllf~arafisg~fqvaYvY 458 (528)
T KOG0253|consen 388 LITSLAEFPG--LLITGVIVERL-----GRKKTMALSLILFGIFLFLLTTCKTRNA--YTVLLFTARAFISGAFQVAYVY 458 (528)
T ss_pred HHHHHhhCCc--hhHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHhchheEEEEe
Confidence 3444444443 24678999996 7899999999999998887776554432 2333344444444444456667
Q ss_pred HhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHHHHhhcc
Q 037870 178 IARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLGFVIY 242 (511)
Q Consensus 178 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~ 242 (511)
..|.. +.+.|+...|......-+|+++.|.++ +....+-..+..+.+..+++..++..++|
T Consensus 459 tPEVy--PTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 459 TPEVY--PTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred cCccc--chhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeee
Confidence 77776 346799999988889999999999999 43333444455555555555555555566
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0012 Score=63.07 Aligned_cols=151 Identities=12% Similarity=0.053 Sum_probs=107.1
Q ss_pred hhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh---cCChhH
Q 037870 78 KVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL---LGKLPI 153 (511)
Q Consensus 78 ~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~---~~~~~~ 153 (511)
...+-||--+.||++..+...+.+....+..+ -.+.|.+..|- .++++.-.+++..++++..+..+ ..+ .
T Consensus 228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~----~~~~~~a~~G~~~~~~~f~lii~a~~~~~--~ 301 (403)
T PF03209_consen 228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRR----LGKKRTAALGCLLGALAFALIILAGPLGS--P 301 (403)
T ss_pred HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHHHHHHHHHHhccc--c
Confidence 34577777788999999999999888888777 45677777652 24455566666666666555433 333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhcc----------CChhhH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNH----------LGPQGA 223 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~----------~gw~~~ 223 (511)
+.+....++.|++.+......-+...+... +++.|..+|.+.....++..+|..+||.+.|. .+|..+
T Consensus 302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~--~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~V 379 (403)
T PF03209_consen 302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTS--AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVV 379 (403)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 335666778899999888877777777773 34578899999999999999999999988652 246667
Q ss_pred HHHhhhHHHHHHH
Q 037870 224 LGVLAIPPVLLIV 236 (511)
Q Consensus 224 f~~~~~~~~i~~~ 236 (511)
|.+-++..++.+.
T Consensus 380 F~lEa~ll~~a~~ 392 (403)
T PF03209_consen 380 FALEAVLLLAALV 392 (403)
T ss_pred HHHHHHHHHHHHH
Confidence 7776665555433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.1e-05 Score=75.13 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhh
Q 037870 314 FVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIR 393 (511)
Q Consensus 314 ~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (511)
...++.....++..+...+.|++.|.+|||..++.+.++..++.+... . -.+.-.++.+..+.++..+..
T Consensus 79 ~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a---t-------A~~~~~~iag~~l~GvgaG~~ 148 (599)
T PF06609_consen 79 NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA---T-------AQNMNTFIAGMVLYGVGAGVQ 148 (599)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh---c-------CCcHHHHHHHHHHHHHhhHHH
Confidence 445566677788888889999999999999999999887776544321 1 112223344445555555544
Q ss_pred HhHHHHHHhhcCCCcchHHHHHHHH
Q 037870 394 WIPMIVLSTRLCPIGIEGTFFALLM 418 (511)
Q Consensus 394 ~~~~~~~~~~~~p~~~~g~~~gl~~ 418 (511)
.. ....++|+.|.+.|+...++..
T Consensus 149 ~~-~~~~isEl~p~k~R~~~~~~~~ 172 (599)
T PF06609_consen 149 EL-AALAISELVPNKWRGLGLAIAS 172 (599)
T ss_pred HH-HHHHHHHhcccchhhhHhHHHH
Confidence 43 3445789999999987665544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.3e-05 Score=72.17 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=117.6
Q ss_pred cccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh
Q 037870 69 SQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL 147 (511)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~ 147 (511)
..|...++....+-.+++| ++-.+...|........+=++ -++.+++..++ ++-.++..+.....+=.+.+..
T Consensus 382 ~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-----GHv~v~~lgLa~~~~Rf~~~S~ 455 (618)
T KOG3762|consen 382 VMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-----GHVNVMYLGLACNVGRFLYYSY 455 (618)
T ss_pred HHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHh-----cccceeeehhhHHHHHHHHHHH
Confidence 3444455555556666666 787777777554444555444 67789999996 5666777777777777777788
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHH-HHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 148 LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGF-CSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
..|.|+ .+-.=+++++..+..+.+.-+++.+.+ +|+.|.+++++... ...+|--+|.++||.+.+.+|-|..|++
T Consensus 456 L~n~W~--vLPieilqgit~aliWaa~~sY~s~va--Pp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 456 LQNPWM--VLPIEILQGITHALIWAAIISYASHVA--PPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred hcCchh--eeeHHHHHHHHHHHHHHHHHHHHHhhC--CCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 787554 345567889999999998889998888 55667888887764 4468999999999999999999999999
Q ss_pred hhhHHHHHHHH
Q 037870 227 LAIPPVLLIVL 237 (511)
Q Consensus 227 ~~~~~~i~~~~ 237 (511)
.++.+++.++.
T Consensus 532 ~giAcl~~l~~ 542 (618)
T KOG3762|consen 532 FGIACLVTLAL 542 (618)
T ss_pred HHHHHHHHHHH
Confidence 88777765443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.01 Score=59.37 Aligned_cols=255 Identities=12% Similarity=0.108 Sum_probs=121.0
Q ss_pred ChHHHHHHHHHhhcchhh--hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHh---------cCChh--------
Q 037870 92 QPSVVQIYIGLCYLPSVM--KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSL---------LGKLP-------- 152 (511)
Q Consensus 92 s~~~~g~~~s~~~l~~~~--~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~---------~~~~~-------- 152 (511)
+++.+..+-....+|.++ ..+...+++++ .|.+++-+....+.....+.++ .++..
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-----s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~ 130 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRL-----SREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAIL 130 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhc
Confidence 677777777767777554 67789999996 3444443333333332222222 11110
Q ss_pred -----H-------HHHHHHHHHHHH-HHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc---
Q 037870 153 -----I-------AIALACSVGISA-GIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN--- 216 (511)
Q Consensus 153 -----~-------~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~--- 216 (511)
+ +.+.+..+..-+ |.........++..|.... ++..|..+++..+.++|.+++..+..++.+
T Consensus 131 ~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~--~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~ 208 (491)
T PF03219_consen 131 PPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV--EEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLR 208 (491)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 011111112211 1112222346677777643 446778999999999999998888888776
Q ss_pred ------cCChhhHHH----HhhhHHHHHHHHHhhcccccccccc---hhhhhhhhhHH-HHHHHHHHhccCCcchHHHHH
Q 037870 217 ------HLGPQGALG----VLAIPPVLLIVLGFVIYETRSANIR---SEKKKVMENVE-FTTKGMYKSMKCPQVWKPSLY 282 (511)
Q Consensus 217 ------~~gw~~~f~----~~~~~~~i~~~~~~~~~e~~~~~~~---~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 282 (511)
...|...+. +..+.+.+......++.+...+.+. ..+++.+++.+ .....++.++|+|.+....+.
T Consensus 209 ~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~l 288 (491)
T PF03219_consen 209 KSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALL 288 (491)
T ss_pred hhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHH
Confidence 123543332 1112222222222333211111000 00011111111 112345556677766655554
Q ss_pred HHHHhhhccCcccceeeeeec----CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhh
Q 037870 283 MYLSLAVSISTHEGQFYWYTD----PKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISG 357 (511)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~----~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~ 357 (511)
..++........ . .|... .++...+ ....|-.....++..++-.++.+++.+|+|++....+.-++..+.+
T Consensus 289 vi~Ygi~inLvE-~--~wK~~lk~~~~~~~~y-safmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 289 VIAYGISINLVE-V--VWKSQLKQLYPDPNDY-SAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHH-H--HHHHHHHHHCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 433333211110 0 11101 1100111 1223444444555566666888999999999988877655554443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.9e-05 Score=54.00 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=41.7
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHH
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVI 133 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~ 133 (511)
...+.++.++++ .|+|+.++|.+.++..+...+ .|+||.++||++ ++|..+..
T Consensus 18 ~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~----~~~~~l~~ 71 (77)
T PF12832_consen 18 CLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFG----KRKVILLG 71 (77)
T ss_pred HHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----ccHHHHHH
Confidence 345667888887 999999999999998877666 899999999972 44544443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.2e-06 Score=83.68 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=1.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHh---hhc-----c---------
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFI---LRW-----N--------- 368 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~---~~~-----~--------- 368 (511)
..++++.++.|++.+..-++.++..++..++.+|..|-|.+..+.+++.+++++..+-. ... .
T Consensus 31 rRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~ 110 (539)
T PF03137_consen 31 RRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS 110 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence 44899999999999999999999999999999888888888888777776655443221 000 0
Q ss_pred cccC-------------------CCchhhhhHHHHHHHHHHHhhHhHH----HHHHhhcCCCcchHHHHHHHHHHHHHHH
Q 037870 369 LALG-------------------IPDSFFVITEQCVSHIISKIRWIPM----IVLSTRLCPIGIEGTFFALLMCIDSIGS 425 (511)
Q Consensus 369 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~g~~~gl~~~~~~lg~ 425 (511)
...- .......+...++..+..|+...|. .+++-|.++++..+.+.|+..++..+|-
T Consensus 111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP 190 (539)
T PF03137_consen 111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP 190 (539)
T ss_dssp -----------------------------------------SSS------------------------------------
T ss_pred cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence 0000 0000111111223344444444444 4566799999999999999999999999
Q ss_pred hHHHHHHHHHHHHh-ccCC------------CC-ccchHHHHHHHHHHHHHHHHHHhhcCCCCcCc
Q 037870 426 LTSKWGGGIVLHLL-HVTR------------TD-FTNLWLVILIRNVLRLATLGLIFLVPKADQSD 477 (511)
Q Consensus 426 ~~g~~l~g~l~~~~-g~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (511)
++|=.+++...+.+ .... .. .+.+|..+++.+++.++..+.++..||+-++.
T Consensus 191 a~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 191 ALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 99988888877643 1111 11 23467777777777766666666666554433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00036 Score=68.21 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHh--cC-Ch----hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhh-hccccchHHHHHHHHH
Q 037870 130 YFVIAGVAGCVSALMFSL--LG-KL----PIAIALACSVGISAGIAIADVVIDACIARNSIEI-RALAPDMQSLCGFCSA 201 (511)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~--~~-~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~ 201 (511)
.++++.++..++.+++.+ .+ .. ....+.+++.+.++|.|..-+...++..|..+++ +++|.+..++++.+.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 456677777777776333 22 11 1234567777889999999999999999998766 5778889999999999
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHHHHH
Q 037870 202 AGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLG 238 (511)
Q Consensus 202 ~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~~~~ 238 (511)
+|..++..+.+++-++.||...|.+.++..++.++..
T Consensus 83 ~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999887777654433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.079 Score=51.91 Aligned_cols=265 Identities=14% Similarity=0.057 Sum_probs=130.8
Q ss_pred hhcccC---CChHHHHHHHHHhhcchhh--hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc---------CC
Q 037870 85 WKDVQK---VQPSVVQIYIGLCYLPSVM--KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL---------GK 150 (511)
Q Consensus 85 ~~~~~g---~s~~~~g~~~s~~~l~~~~--~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~---------~~ 150 (511)
++|.+. .+++.+.++-+...+|..+ .++.+.+.++. .|..++-.....+....+++++. ++
T Consensus 49 lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-----t~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~ 123 (509)
T COG3202 49 LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-----TREKVFYIILGFFLGFFALFAFVIYPYKDILHPD 123 (509)
T ss_pred hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 455443 4577788888888887543 88999999996 34444443333333434433321 11
Q ss_pred h----------h-----------HHHHHHHHHHHHH-HHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHH
Q 037870 151 L----------P-----------IAIALACSVGISA-GIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGY 208 (511)
Q Consensus 151 ~----------~-----------~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~ 208 (511)
+ . -+.+......+-+ |.-...........|++.. ++..|..++++.+.+++..++.
T Consensus 124 ~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~--~eakRFy~lf~l~~ni~lllsg 201 (509)
T COG3202 124 PEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTI--EEAKRFYPLFGLGANISLLLSG 201 (509)
T ss_pred HHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHhhhhHHHHHHHHHHHHHHHH
Confidence 0 0 0112222222222 2222223445666777644 3467789999999999999988
Q ss_pred HHHHHhhccC-C---------hhhHHHHhhhHHHHHHHHHhhcccccccccc----hhhhhhhhhHH-HHHHHHHHhccC
Q 037870 209 AVSGFSVNHL-G---------PQGALGVLAIPPVLLIVLGFVIYETRSANIR----SEKKKVMENVE-FTTKGMYKSMKC 273 (511)
Q Consensus 209 ~~~g~l~~~~-g---------w~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~----~~~~~~~~~~~-~~~~~~~~~l~~ 273 (511)
.+..++..+. . .+..+.+.++.+++.+....++.+.-.+.+. ..+++++++.+ .....++..++.
T Consensus 202 ~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s~k~i~~S 281 (509)
T COG3202 202 EVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKMILRS 281 (509)
T ss_pred HHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHHHHHHHhh
Confidence 8888876532 1 2334444444444433333333221111110 00011011111 122345556667
Q ss_pred CcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCC---hhHHHHHHHHHHHH-HHHHHHHHHHHhccCCChHHHHHH
Q 037870 274 PQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFS---QEFVGLIYALGAVA-SMIGVLIYHKTLKDYPLRNLLFSA 349 (511)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s---~~~~g~~~~~~~~~-~~~~~~~~~~l~~r~~~~~~l~~~ 349 (511)
|-++...+...+++...-.+. ..|.......+--. .+..|.+....++. .++....++.+.+|+|+...-.+.
T Consensus 282 kyL~~ial~vl~Y~v~inLvE---~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~Alit 358 (509)
T COG3202 282 KYLGAIALLVLAYGVSINLVE---GVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALIT 358 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHH
Confidence 766665554444433211110 11111111001111 12233333333333 666778889999999988777766
Q ss_pred HHHHHHhhhh
Q 037870 350 QLLYGISGML 359 (511)
Q Consensus 350 ~~~~~~~~~~ 359 (511)
-+...+.+.+
T Consensus 359 Piv~litg~l 368 (509)
T COG3202 359 PLVMLITGVL 368 (509)
T ss_pred HHHHHHHHHH
Confidence 5555554433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.027 Score=54.52 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=86.1
Q ss_pred CCCChhHHHH-HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFSQEFVGL-IYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s~~~~g~-~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
.|++..++.- ++-+..=..+...+....+.|..+.|.++++..+...+.-++. ++. ......- +.
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~ll-l~~---------~sv~~mq----~~ 100 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLL-LFG---------TSVLAMQ----LM 100 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHH---------CcHHHHH----HH
Confidence 5888887653 2233333444455556677888899999988866655432221 111 1111111 22
Q ss_pred HHHHHhhH---hHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Q 037870 387 HIISKIRW---IPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLAT 463 (511)
Q Consensus 387 ~~~~~~~~---~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 463 (511)
.++.|... ....+++-..+|+++--++.+...+..-+|..+|..++-.+...-+ .+ +..+..+......++
T Consensus 101 q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~---~s---y~~L~~isl~~~~~a 174 (412)
T PF01770_consen 101 QFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG---VS---YFQLNYISLASVSLA 174 (412)
T ss_pred HHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC---HHHHHHHHHHHHHHH
Confidence 33333333 3344555567788877788888888888888888888777666322 22 333444555555566
Q ss_pred HHHHhhcCCCCc
Q 037870 464 LGLIFLVPKADQ 475 (511)
Q Consensus 464 ~~~~~~~~~~~~ 475 (511)
++..+++|..++
T Consensus 175 ~~~~~fLP~~~~ 186 (412)
T PF01770_consen 175 LLIALFLPMPKR 186 (412)
T ss_pred HHHHHHcCCCCc
Confidence 666667777654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0019 Score=64.13 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHH
Q 037870 321 LGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVL 400 (511)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (511)
..++..++...+.|.+.||+|||..+....+...+....... .. +|+++ ...+. ...+.......++
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~--~~---------~~~~~-~~~l~-g~~~~~~s~~~a~ 136 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF--QG---------YWFFL-LLGLS-GGFSAIFSVGFAY 136 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH--HH---------HHHhh-hcccc-cchhhhhhhhhhh
Confidence 456778888899999999999999988876555542222111 10 11111 00011 1112233445667
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHh-hcCCCCcCcC
Q 037870 401 STRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIF-LVPKADQSDE 478 (511)
Q Consensus 401 ~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 478 (511)
+++....+.|...+|+.+.....+..++|.+++.+.+..|+. ..+.+..+..++..+... .+||...+.+
T Consensus 137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a--------~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIA--------LVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCch--------HHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 888999999999999999999999999999999999986543 345566666666665554 6777655444
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00063 Score=49.47 Aligned_cols=71 Identities=8% Similarity=-0.036 Sum_probs=56.7
Q ss_pred hhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhH
Q 037870 77 SKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPI 153 (511)
Q Consensus 77 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (511)
+.+.+|... ++.++|..+.|++.+...++|.+ .+....+.++. ++++.+..+.+.+.+.++.+++.++...
T Consensus 11 yTplLP~M~-~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ma~~~~~~~ 82 (85)
T PF06779_consen 11 YTPLLPLMQ-ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-----RPRRLLRAGLLLTVLSTAAMALTHSFWL 82 (85)
T ss_pred HHhHhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 345566654 45999999999999999999999 66677777763 5677888899999999999999887553
|
Note that many members are hypothetical proteins. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0035 Score=55.89 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=49.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHh-----hccCChhhHHHHhhhHHHHHHHHHhhcccccccccchhhhhhhhh-HHH
Q 037870 189 APDMQSLCGFCSAAGSLIGYAVSGFS-----VNHLGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMEN-VEF 262 (511)
Q Consensus 189 r~~~~~~~~~~~~~G~~lg~~~~g~l-----~~~~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~ 262 (511)
|+........+.++|.++.-..--.- .....|++++.+.+++.++.++++..+. ++.+.....+++++++ ..+
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifG-k~fd~~~~~~k~~k~~~~~~ 82 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFG-KNFDIYSPKEKQEKENSTLS 82 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccCccccccccccccc
Confidence 45555555567778877754332111 1123599999888877777544444432 2211111100110000 011
Q ss_pred HHHHHHHhccCCcchHHHHHHHH
Q 037870 263 TTKGMYKSMKCPQVWKPSLYMYL 285 (511)
Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~~~ 285 (511)
......+.+|++..|...+....
T Consensus 83 ~~~s~~~~LK~K~tw~w~~~Yg~ 105 (267)
T PF07672_consen 83 KKPSYKSILKEKETWKWILIYGI 105 (267)
T ss_pred ccchHHHHHccchHHHHHHHHHH
Confidence 12456788999998877665443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=59.75 Aligned_cols=308 Identities=15% Similarity=0.144 Sum_probs=143.5
Q ss_pred HHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 037870 97 QIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVID 175 (511)
Q Consensus 97 g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 175 (511)
|.+.-.-.+|..+ +...-.+.||++ ++.|.. +..++.+.+..+.+++++..+ -+.+..++.++.+...+..-
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfp---f~~Ri~--~~v~~sa~s~~lVafs~s~~~--sL~GV~~aSissGlGEiTFL 137 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFP---FGFRIA--LVVLLSALSFFLVAFSNSVPM--SLLGVVFASISSGLGEITFL 137 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcc---cchHHH--HHHHHHhcceEEEEeccchhH--HHhhhhhhhhcCCcceeehh
Confidence 3344445566554 777777889985 455533 334566667777777775554 45566677888887777666
Q ss_pred HHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc--cCChhhHHHHhhhHHHHHHHHH-hhcccccccc-c--
Q 037870 176 ACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN--HLGPQGALGVLAIPPVLLIVLG-FVIYETRSAN-I-- 249 (511)
Q Consensus 176 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~--~~gw~~~f~~~~~~~~i~~~~~-~~~~e~~~~~-~-- 249 (511)
++.+.+-+ .. .+.+..+.+.++++|..-=.++.+ ..+.|....++..+.++..... +.+++++... +
T Consensus 138 ~lss~Y~~------~~-i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl 210 (409)
T KOG3880|consen 138 ALSSRYPS------IV-IAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTL 210 (409)
T ss_pred hhhccCCC------ce-eccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCc
Confidence 65544421 11 111223333444555443334433 3567888888877776654444 3343322111 0
Q ss_pred -chh-------------hhh----hhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCC
Q 037870 250 -RSE-------------KKK----VMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFS 311 (511)
Q Consensus 250 -~~~-------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 311 (511)
+.. +++ .+...++.++.++.+++ .........+.-.....+....+ +|-- .++...+
T Consensus 211 ~~~~~~~~~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll~--~MvPL~~VY~~EY~INQGl~ell-~F~c--~~g~sls 285 (409)
T KOG3880|consen 211 QPSTEIIPSQYLPFEAAEEKSVPSRRLGLKETLKRIKPLLK--YMVPLALVYFAEYFINQGLAELL-LFPC--SHGFSLS 285 (409)
T ss_pred CccceeccCCCCcccccccccCchhhhcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhHhhE-Eecc--ccCCccc
Confidence 000 000 01112222222333322 11111112222222222222111 2211 1112222
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHH
Q 037870 312 Q-EFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIIS 390 (511)
Q Consensus 312 ~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (511)
. .|+=+......+|-.+..- -.+-+..+ .+....++..+- +....+- ..++-.|..++++...+..++.+
T Consensus 286 ~~sqYRwyqvlYQlGVFiSRS----S~~~~~~p-~l~~LailQ~vN-l~ff~~~---a~~~ftpsi~ivf~lI~~EGLlG 356 (409)
T KOG3880|consen 286 KDSQYRWYQVLYQLGVFISRS----SINLFTMP-YLWLLAILQFVN-LLFFLLQ---AWYWFTPSIWIVFALILFEGLLG 356 (409)
T ss_pred hhhcchhhheeeeeeEEEEec----cceEEech-HHHHHHHHHHHH-HHHHHHH---HHHHhccHHHHHHHHHHHHhhcC
Confidence 2 2344444554444322211 11111122 222222222211 1111111 11223455565555566778888
Q ss_pred HhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHH
Q 037870 391 KIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGG 432 (511)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~ 432 (511)
|..+....--+.+-.++++|=-+++.......+|-.++..++
T Consensus 357 GasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 357 GASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred chHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 888888777777777778888887776666666665555443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0047 Score=59.44 Aligned_cols=125 Identities=16% Similarity=0.043 Sum_probs=78.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCC-Cchh--hhhHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGI-PDSF--FVITEQC 384 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~ 384 (511)
+| +....-+...++.+..+.-.+.+-|+.||+|.|..+.++...-.++..+-..-... .+ +..+ +.+.++.
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p-----~v~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLP-----FVPPLFRRPLTHTGQS 148 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCc-----cccccchhhhhHHhHH
Confidence 45 44445566678888889889999999999999999999887777665544332211 01 2222 2223332
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 385 VSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
+......+....-.-+..-.+|+++|+++..+..+.+.+|.++|..+...+...
T Consensus 149 iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 149 IAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 222222211111112233458999999998888877788888888887777654
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.1 Score=53.62 Aligned_cols=151 Identities=14% Similarity=0.068 Sum_probs=95.7
Q ss_pred hhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc-------C----
Q 037870 82 DYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL-------G---- 149 (511)
Q Consensus 82 ~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~-------~---- 149 (511)
-.|+.++++.+...+.-.++.+.-...+ ..+.+.++|.+. +|-+.+.++.++..++..+..++ +
T Consensus 61 v~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~----gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 61 VTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFL----GRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 3345556887776554444433322233 456889999983 67777777776666664443321 1
Q ss_pred ---C------hh---HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchh--h--hccccchHHHHHHHHHHHHHHHHHHHHH
Q 037870 150 ---K------LP---IAIALACSVGISAGIAIADVVIDACIARNSIE--I--RALAPDMQSLCGFCSAAGSLIGYAVSGF 213 (511)
Q Consensus 150 ---~------~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~--~--~~~r~~~~~~~~~~~~~G~~lg~~~~g~ 213 (511)
. .. ...+...+.+.++|.+..-+...++-+|-.++ + ...+.+.+.+++...++|..++..+..+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 0 01 12334444555666666666666666666542 1 2334578899999999999999998888
Q ss_pred hhccCChhhHHHHhhhHHHHHHH
Q 037870 214 SVNHLGPQGALGVLAIPPVLLIV 236 (511)
Q Consensus 214 l~~~~gw~~~f~~~~~~~~i~~~ 236 (511)
.-++.||.+-|.+..+..++.++
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAIL 239 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHH
Confidence 88889999999888776666443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.066 Score=53.39 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhccccc-----------CCC-----
Q 037870 312 QEFVGLIYALGAVASMIG-VLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLAL-----------GIP----- 374 (511)
Q Consensus 312 ~~~~g~~~~~~~~~~~~~-~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----- 374 (511)
.+.+..+.....+...+. ..+.+++.+|+++++++............+...........+ ..+
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~ 121 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG 121 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence 356666665554444444 788899999999999888765544432222211111000000 000
Q ss_pred -----chhhhhHHHHHHHHHHHhhHh-HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 375 -----DSFFVITEQCVSHIISKIRWI-PMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 375 -----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
..|..-.+.+.....+.+... .....++|++..++..+.+++.....++|..+|+.+..++.+.
T Consensus 122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011111111222333333332 4456788999999999999999999999999999988887753
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0012 Score=67.99 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=115.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhh---------c------cc-
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILR---------W------NL- 369 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~------~~- 369 (511)
..++++.++.|++....-++..+......++..|..+-+++-.+.+++.+++++..+--.. . +.
T Consensus 125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~ 204 (735)
T KOG3626|consen 125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPS 204 (735)
T ss_pred hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCc
Confidence 3378888899988888888888888888888888888888888877776655544322000 0 00
Q ss_pred ------------cc--C-C-------CchhhhhHHHHHHHHHHHhhHhHHH----HHHhhcCCCcchHHHHHHHHHHHHH
Q 037870 370 ------------AL--G-I-------PDSFFVITEQCVSHIISKIRWIPMI----VLSTRLCPIGIEGTFFALLMCIDSI 423 (511)
Q Consensus 370 ------------~~--~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~g~~~gl~~~~~~l 423 (511)
.. . . ......+...++..+..|+...|.+ +++-|.+.+++...+.|+..++..+
T Consensus 205 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~l 284 (735)
T KOG3626|consen 205 SSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAIL 284 (735)
T ss_pred cccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHh
Confidence 00 0 0 0001112222344445555554544 5566888888999999999999999
Q ss_pred HHhHHHHHHHHHHHHhccC---C-------CC-ccchHHHHHHHHHHHHHHHHHHhhcCCCCcCcC
Q 037870 424 GSLTSKWGGGIVLHLLHVT---R-------TD-FTNLWLVILIRNVLRLATLGLIFLVPKADQSDE 478 (511)
Q Consensus 424 g~~~g~~l~g~l~~~~g~~---~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (511)
|-++|=++++++.+.+--. + .. .+.+|..|++++.+.+++.+.++..|+..+++.
T Consensus 285 GPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 285 GPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred hhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 9999999999988754211 1 11 234678899999998888888888888776554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.45 Score=47.31 Aligned_cols=60 Identities=10% Similarity=-0.097 Sum_probs=41.9
Q ss_pred hhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHH
Q 037870 376 SFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIV 435 (511)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l 435 (511)
-++.+...++.++..|......+....+.+++++|-.+-.+++....+|-.+|..++-.+
T Consensus 372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556777777777666666777778888887777777777778888777765443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.037 Score=46.08 Aligned_cols=106 Identities=10% Similarity=0.014 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHH
Q 037870 321 LGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVL 400 (511)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (511)
+......+..++.+.+.++.|.|+.+.++.++..+-.... . .++.+..+....+.++..+..+...-.+
T Consensus 45 i~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~---~--------~~~~~~l~~~s~l~G~~~a~lW~aqg~y 113 (156)
T PF05978_consen 45 ILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF---F--------YPNSYTLYPASALLGFGAALLWTAQGTY 113 (156)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH---H--------hhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence 3334455566667788888999999998866665311111 0 2344555666778888889989888888
Q ss_pred HhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 401 STRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 401 ~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
+.+...++.+++..|+.-.+.+.+..+|..+.-.+.+
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888888777665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0047 Score=44.49 Aligned_cols=46 Identities=11% Similarity=0.270 Sum_probs=40.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 037870 307 GPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLL 352 (511)
Q Consensus 307 ~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~ 352 (511)
+.|+|+.++|++..+..+..+++.++.|.+.||.++++.......+
T Consensus 29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3799999999999999999999999999999999998887766443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.034 Score=58.08 Aligned_cols=158 Identities=10% Similarity=-0.027 Sum_probs=87.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKD-YPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+|++......+........-+...+++.+.|+ +|+++.+..+.++..++..+..+ .. .............+.+..+.
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a-~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA-IPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc-CcccccchHHHHHHHHHHHH
Confidence 57777777666644444444445556666665 58888888887766654332221 10 00000000111122222233
Q ss_pred HHHHHhhHhHHHHHHhhcCCCc---chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Q 037870 387 HIISKIRWIPMIVLSTRLCPIG---IEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLAT 463 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~---~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 463 (511)
..+.+..-+...+...+..+++ .+-..+.++....|+|+.+++.+.+++.+..+-. +.+..++..+.+.+++.+++
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f-g~~~~~~~aF~i~~i~m~ia 174 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF-GCQDCYPLAFGVPAILMILA 174 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCcchHHHHHHHHHHHHHH
Confidence 3333444444555666665543 3567788888888999999999999887654211 11224556677777666666
Q ss_pred HHHHh
Q 037870 464 LGLIF 468 (511)
Q Consensus 464 ~~~~~ 468 (511)
++...
T Consensus 175 ~lvf~ 179 (654)
T TIGR00926 175 LIVFM 179 (654)
T ss_pred HHHHH
Confidence 55543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.045 Score=54.60 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=75.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCC----ChHH-HHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYP----LRNL-LFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITE 382 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~----~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (511)
+|+++.+...+.....+.-.+ .++.|.+.|-++ |||. +.++.++..+..+. +...... ..........
T Consensus 20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~-~~~~~~~-----~~s~~~~~~~ 92 (433)
T PF03092_consen 20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALV-LALLPAS-----ESSAAIAVVL 92 (433)
T ss_pred cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHH-HHhcccc-----cchhhhHHHH
Confidence 799999988766555554443 356788888763 3444 34444333322121 1111110 0111112222
Q ss_pred HHHHHHHHHhhHhHHHHHHhhcCCC--cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 037870 383 QCVSHIISKIRWIPMIVLSTRLCPI--GIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
.++..++..+.....-+++.|...+ +.+|...+.......+|+.++..++|.+.+..+.
T Consensus 93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~ 153 (433)
T PF03092_consen 93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP 153 (433)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence 3345555666666667777776532 3378888888889999999999999999887654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.14 Score=42.68 Aligned_cols=102 Identities=9% Similarity=-0.002 Sum_probs=71.6
Q ss_pred hcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcc
Q 037870 104 YLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACIARNS 182 (511)
Q Consensus 104 ~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 182 (511)
...+.+ .++...+.+++ +.|+.++++.+...+-.... +-++ ...++....+.|++.+...+....++.+..
T Consensus 47 Y~~~~~s~l~~P~iv~~l-----g~K~sm~lg~~~y~~y~~~~-~~~~--~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 47 YGSFAISCLFAPSIVNKL-----GPKWSMILGSLGYAIYIASF-FYPN--SYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHhHHHHHHHH-----hhHHHHHHHHHHHHHHHHHH-Hhhh--HHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 333444 56666778886 57888888877766544332 3343 233566677889999999998888888887
Q ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 037870 183 IEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSV 215 (511)
Q Consensus 183 ~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~ 215 (511)
++ +.+++..++++.....+.++|.++.-.+.
T Consensus 119 ~~--~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 119 TE--ETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred CH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 44677789888888888888887765443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.2 Score=42.27 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=32.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 187 ALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 187 ~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
....+..+.....-..-.++.|.+.|.+++..+-|..-...++..++
T Consensus 171 s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 171 SVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred HHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 33444445555667778899999999999988888755555555444
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.7 Score=42.35 Aligned_cols=127 Identities=10% Similarity=0.063 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHH-HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccC------------CCch-
Q 037870 311 SQEFVGLIYALGA-VASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALG------------IPDS- 376 (511)
Q Consensus 311 s~~~~g~~~~~~~-~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~- 376 (511)
+++.+..+=.... -++++...+..++.+++++.+++............+...+.......+. .+..
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 4555555433222 2455556778999999999998876644433322121111110000000 0000
Q ss_pred --------hhhhHHHHHHHHHHHhhHh-HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 377 --------FFVITEQCVSHIISKIRWI-PMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 377 --------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
|..-...+.....+.+... ....+.+|++..++..+.+++.+...|+|..+++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111222222222 235667899999999999999999999999999888888887
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.34 Score=45.18 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHh
Q 037870 313 EFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKI 392 (511)
Q Consensus 313 ~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (511)
...+.......++..++.++.|++.||.|+|+.+..+........+. ..+.. ....+..+......++..+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~g~~~~~ 110 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLL-LALAP-------NVGLALLLILRLLQGLGGGG 110 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH-HHhCc-------cchHHHHHHHHHHHHhhhHH
Confidence 35677777777888888899999999999887766664432221111 11111 01122233333334555566
Q ss_pred hHhHHHHHHhhcCCC-cchHHHHHHHHH-HHHHHHhHHHHHHHHHHHH
Q 037870 393 RWIPMIVLSTRLCPI-GIEGTFFALLMC-IDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 393 ~~~~~~~~~~~~~p~-~~~g~~~gl~~~-~~~lg~~~g~~l~g~l~~~ 438 (511)
..+....+..+..|+ +.++...+.... ...++..+++.+++.+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 111 LLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677888899887 678888888888 5778888888888877765
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.4 Score=48.91 Aligned_cols=145 Identities=12% Similarity=0.016 Sum_probs=75.5
Q ss_pred hhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHH---HHHHHHHHHhcCCh---hH
Q 037870 81 TDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVA---GCVSALMFSLLGKL---PI 153 (511)
Q Consensus 81 ~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~---~~~~~~~~~~~~~~---~~ 153 (511)
...++.-.+|-+..+.+.+.+++.++..+ ..+.|++.++. .+.+...-..+ ..++..+....... ..
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~------~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~ 110 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA------AAGFVAVELLLALLGGLSALILYAAFAFQGLSR 110 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445788999999999999999887 55566655331 12222211111 11111111111110 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhc-cCChhhHHHHhhhHHH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVN-HLGPQGALGVLAIPPV 232 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~-~~gw~~~f~~~~~~~~ 232 (511)
.......++.++..|...+....+..+.. .++.++..|..+....+|+++|.++.+++.- .+|-....++.+.+.+
T Consensus 111 ~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~---~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~ 187 (521)
T PRK03612 111 LLLYVLVLLIGLLIGMEIPLLMRILQRIR---DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNL 187 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 11122223334444444443333332211 1124566777888999999999999988754 6786655555555554
Q ss_pred HH
Q 037870 233 LL 234 (511)
Q Consensus 233 i~ 234 (511)
+.
T Consensus 188 ~~ 189 (521)
T PRK03612 188 LA 189 (521)
T ss_pred HH
Confidence 43
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.43 Score=48.72 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=65.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|-+....+.+.++..++..+|+.+.+++.++ ..++....-..+..++.+...++... ..+. ...........++.+
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ll~~~-~~~~-~~~~~~~~~~~~~~~ 121 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSALILYAA-FAFQ-GLSRLLLYVLVLLIG 121 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHH
Confidence 46667777777788888888888888877633 22222222211111111111111110 0010 001111112222334
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHH-HhccC
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLH-LLHVT 442 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~-~~g~~ 442 (511)
++.|+..+....+..+. ..+..|...|-......+|+.+|+.+.+++.- .+|..
T Consensus 122 ~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~ 176 (521)
T PRK03612 122 LLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLI 176 (521)
T ss_pred HHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchH
Confidence 55555543333333322 22234556677777899999999999888764 56643
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.83 Score=44.44 Aligned_cols=57 Identities=7% Similarity=-0.227 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHh
Q 037870 156 ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFS 214 (511)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l 214 (511)
.++..+..|+..|...+.....+.+.. ++++|-..++....+.++|..++..++-.+
T Consensus 338 vf~lif~eGLlGGa~YVNtF~~I~~~~--~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 338 VFVLIFYEGLLGGASYVNTFYRISEEV--PPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444556667777777776666666654 346688889988888889988888877554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.6 Score=39.44 Aligned_cols=28 Identities=7% Similarity=-0.423 Sum_probs=16.9
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHH
Q 037870 185 IRALAPDMQSLCGFCSAAGSLIGYAVSG 212 (511)
Q Consensus 185 ~~~~r~~~~~~~~~~~~~G~~lg~~~~g 212 (511)
+|++-|...|+.+..+.+...+.-++..
T Consensus 236 ~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S 263 (267)
T PF07672_consen 236 NPKKIGIQFGLIWGFGYIFYTIYDIILS 263 (267)
T ss_pred CcceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778666655555555544443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.46 E-value=2.2 Score=42.29 Aligned_cols=124 Identities=12% Similarity=0.087 Sum_probs=78.7
Q ss_pred hhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHH---HHHHHHHHHHHhcCC-----
Q 037870 80 VTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAG---VAGCVSALMFSLLGK----- 150 (511)
Q Consensus 80 ~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~---~~~~~~~~~~~~~~~----- 150 (511)
.+..|+++ .|+++..+|..-+...+.... ..+..++.+|++ -.| .=+++. ..+.......-+.+.
T Consensus 280 lmt~yl~~-~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG----lvr-~G~~~l~~q~~~L~~~v~~~~~~~~~~~~ 353 (432)
T PF06963_consen 280 LMTAYLKS-QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG----LVR-AGLWSLWWQWVCLALCVVSFWAPGSPFSS 353 (432)
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----chh-hHHHHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 45666777 599999999888777665444 556677777763 112 222222 222222222222322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHH
Q 037870 151 LPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVS 211 (511)
Q Consensus 151 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~ 211 (511)
.+...++.+..+..+|.=..|....-++-|..+ +++||...|.=+...++-.++-..++
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~--~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVP--ESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCC--HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 234445666777888888888888778777774 46699998877777777777766654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.32 E-value=4.4 Score=40.22 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhh----ccc-------c-cCCC-c--
Q 037870 312 QEFVGLIYALGAV-ASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILR----WNL-------A-LGIP-D-- 375 (511)
Q Consensus 312 ~~~~g~~~~~~~~-~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~-------~-~~~~-~-- 375 (511)
++.+..+-....+ ++++..++..++.++..+.+++...........++....... .+. + -..| .
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~ 139 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLK 139 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccce
Confidence 4455555454444 677778889999999999988876644433322221111110 000 0 0011 1
Q ss_pred -------hhhhhHHHHHHHHHHHhhHh-HHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037870 376 -------SFFVITEQCVSHIISKIRWI-PMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHL 438 (511)
Q Consensus 376 -------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~ 438 (511)
.|..-.........+.+... .......|++..++..+.+++++...|++..+++.+..++.+.
T Consensus 140 ~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 140 WFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01111111122222222222 2345677999999999999999999999999998888888763
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.11 Score=50.53 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=78.1
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcc----CCChHHHHHHHHHHHHhhhhhHHHhhhcccccCC-C---chh--
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKD----YPLRNLLFSAQLLYGISGMLDLIFILRWNLALGI-P---DSF-- 377 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-- 377 (511)
.|.+....+.+...+-+.+++-.++.|...|| +||||-.+....+.+...+..+.........++. + ...
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 57777888888766666666666777777764 7888888777655554444333222211111111 1 111
Q ss_pred --hhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHH-HHHHHHHHHHHHHhHHHHHHH
Q 037870 378 --FVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGT-FFALLMCIDSIGSLTSKWGGG 433 (511)
Q Consensus 378 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~-~~gl~~~~~~lg~~~g~~l~g 433 (511)
..+....+.-+.......|.-++..+++..+.+-+ +++.+..+..+|+.+|=.+++
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 12222334445555667788889999987777766 888888888888888766665
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.7 Score=33.75 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGI 355 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~ 355 (511)
.++|.++.|++.+...+|.++|.+...++.++.+.++.+..+.+...+
T Consensus 22 ~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~ 69 (85)
T PF06779_consen 22 GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVL 69 (85)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 689999999999999999999999999998887777777776555443
|
Note that many members are hypothetical proteins. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.77 E-value=2.7 Score=41.95 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Q 037870 316 GLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSA 349 (511)
Q Consensus 316 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~ 349 (511)
.++.....+..++......++..|.+.+.-+..+
T Consensus 48 ~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~ 81 (437)
T TIGR00939 48 TYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGG 81 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccchhHHH
Confidence 3344555666666667777777777764444444
|
|
| >COG1288 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.30 E-value=12 Score=36.48 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=30.8
Q ss_pred HhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccch
Q 037870 391 KIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNL 449 (511)
Q Consensus 391 ~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~ 449 (511)
+...+|.++=..+.+...++-.+ -.++....+.+.+.|. +|.+...++..+-+|+.+
T Consensus 400 A~ltMPImAPLaD~vgv~RqvvV-~Afq~g~G~~n~I~PT-Sg~~ma~La~~~i~y~~W 456 (481)
T COG1288 400 AVLTMPIMAPLADLVGVPRQVVV-LAFQLGDGFSNIIAPT-SGLLMATLAMARVPYGTW 456 (481)
T ss_pred hHhhchhhhhhHHhcCCCHHHhh-hhhhhcchhhheecCc-hHHHHHHHHHccCChhHH
Confidence 44556777667777765544333 3345555555555554 344444444445555554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.06 E-value=2.4 Score=38.43 Aligned_cols=125 Identities=10% Similarity=0.096 Sum_probs=74.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|+...++|.++..+....++.+.+.|-+.||.|||+.-..-++..++.++. . ..|...+.+++-.+.+
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT------K-----hSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT------K-----HSPQYKVLMVGRVLGG 135 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh------h-----cCCceEEEeehhhhhh
Confidence 6888999999987777777777888899999999998655443333332221 1 1233334444444545
Q ss_pred HHHHhhHhHH-HHHHhhcCCCc-----chHHHHHHHH-HHHHHHHhHHHHHHHHHHHHhccCC
Q 037870 388 IISKIRWIPM-IVLSTRLCPIG-----IEGTFFALLM-CIDSIGSLTSKWGGGIVLHLLHVTR 443 (511)
Q Consensus 388 ~~~~~~~~~~-~~~~~~~~p~~-----~~g~~~gl~~-~~~~lg~~~g~~l~g~l~~~~g~~~ 443 (511)
...+..+... ..++.|+.+++ -....++-.. .-+.+-..+++..+-.+++.++...
T Consensus 136 iaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGP 198 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGP 198 (454)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCC
Confidence 4444444333 34566766332 2223333333 2234666777778888888877553
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.42 E-value=6.6 Score=39.09 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=61.8
Q ss_pred cchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCC-h---------------hHHHHHHHHHHHHHHH
Q 037870 105 LPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGK-L---------------PIAIALACSVGISAGI 167 (511)
Q Consensus 105 l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~l~~~g~ 167 (511)
++..+ +.+++.+++|.. +++|++.+.++..+..+..++.-+... . ......+..++.|++-
T Consensus 290 ~g~v~~g~~~~~l~~rir--~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D 367 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIR--GFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD 367 (461)
T ss_pred HHHHHHHHHHHHHhhhhh--hcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence 44444 677889999974 346888888887777776666543211 0 1223455556677777
Q ss_pred HHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHH
Q 037870 168 AIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVS 211 (511)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~ 211 (511)
+........++....++ +|..+.+++-.-..+++.++....
T Consensus 368 ~~~~t~~~~ii~~~~~~---~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 368 ACFNTQRYVIIALLYPD---DRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHhhhh
Confidence 77666666666666533 355566655555556665544433
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.07 E-value=16 Score=35.60 Aligned_cols=53 Identities=6% Similarity=-0.073 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHH
Q 037870 378 FVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKW 430 (511)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~ 430 (511)
+.+....+.++..|-.....+.+..+.+|++++-.+-.++......|...|..
T Consensus 345 ~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~ 397 (406)
T KOG1479|consen 345 WFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL 397 (406)
T ss_pred HHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33344445555555555555555556666555544433333333444444443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.88 E-value=6.4 Score=38.27 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC
Q 037870 451 LVILIRNVLRLATLGLIFLVPKAD 474 (511)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~ 474 (511)
..|.++.+..+++.+.+..+|+.+
T Consensus 184 ~yF~~s~~~~llC~i~y~~l~~lp 207 (406)
T KOG1479|consen 184 IYFITSTVILLLCFVLYLVLPKLP 207 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcch
Confidence 445666666666666666555543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=90.86 E-value=9.8 Score=38.02 Aligned_cols=59 Identities=20% Similarity=-0.015 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhh
Q 037870 162 GISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQG 222 (511)
Q Consensus 162 l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~ 222 (511)
+..+......++..++-+.++ +|...|+.|.+.++..|+|+.--..+.-+++|.+.++.
T Consensus 414 l~sf~stvmFVai~AFharIS--DP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~ 472 (544)
T PF13000_consen 414 LSSFMSTVMFVAIMAFHARIS--DPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT 472 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence 334444444445555556665 67788999999999999887776666666666665543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.084 Score=46.96 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=33.2
Q ss_pred hhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhccc------ccCCCCCchHHHHHHH
Q 037870 82 DYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAF------PIKGYHRRPYFVIAGV 136 (511)
Q Consensus 82 ~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~------~~~g~~Rr~~l~~~~~ 136 (511)
..++++ .|.++....+++-+..+..++ .|+.|..+|.= .+.| ||+.+-.++.+
T Consensus 41 llfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G-~~~~wh~~gt~ 100 (412)
T KOG4830|consen 41 LLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIG-RRMSWHLIGTV 100 (412)
T ss_pred HHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhc-ceeeeeecccE
Confidence 334555 788887777777777777777 78877555431 2234 66666655543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=87.67 E-value=8.6 Score=37.47 Aligned_cols=76 Identities=14% Similarity=-0.018 Sum_probs=53.8
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCc---chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Q 037870 385 VSHIISKIRWIPMIVLSTRLCPIG---IEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRL 461 (511)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 461 (511)
+..++.|..=+....+..+..+++ ++-+.+..+....|+|+.++..+.+++-+..| +...|.++.++.+
T Consensus 42 lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~--------~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 42 LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYG--------WFLGFGIPAIGML 113 (372)
T ss_dssp HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS---------HHHHHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccc--------hhhhhhHHHHHHH
Confidence 445555666566667777776554 56678888889999999999999998886544 3456777777776
Q ss_pred HHHHHHh
Q 037870 462 ATLGLIF 468 (511)
Q Consensus 462 ~~~~~~~ 468 (511)
++++..+
T Consensus 114 ~~~~~f~ 120 (372)
T PF00854_consen 114 LALIVFL 120 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG4255 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.44 E-value=48 Score=31.22 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 037870 457 NVLRLATLGLIFLVPKAD 474 (511)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~ 474 (511)
..+++.+...+++.++..
T Consensus 200 ~~~alaAF~vL~r~~~~~ 217 (439)
T KOG4255|consen 200 TCAALAAFFVLYRLGAHW 217 (439)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 344455555555554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 511 | |||
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 1e-08 |
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 43/333 (12%), Positives = 102/333 (30%), Gaps = 23/333 (6%)
Query: 108 VMKPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGI 167
+ +P++GL +D G + ++I G+ + + G L L S+ +
Sbjct: 58 LFQPLFGLLSDKL---GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114
Query: 168 AIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHL---GPQGAL 224
+ + + G G +G+A+ V + Q
Sbjct: 115 GFCFNAGAPAV--EAFIEKVSRRSNFEF-GRARMFGC-VGWALGASIVGIMFTINNQFVF 170
Query: 225 GVLAIPPVLLIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMY 284
+ + ++L VL F ++ + F+ K + + P++W SLY+
Sbjct: 171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVI 230
Query: 285 LSLAVSISTHEGQFYWY-TDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLR 343
++ + + QF + T A G + +G + + + + +
Sbjct: 231 G-VSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK 289
Query: 344 NLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTR 403
N L A + +R + + V+ + + + T
Sbjct: 290 NALLLAGTIM----------SVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339
Query: 404 LCPIGIEGTFFALLMCI-DSIGSLTSKWGGGIV 435
+ T + + C + + G +
Sbjct: 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 511 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.44 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.14 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.14 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.07 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.04 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.01 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.95 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=273.86 Aligned_cols=360 Identities=11% Similarity=0.018 Sum_probs=262.7
Q ss_pred HHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHH
Q 037870 59 IFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVA 137 (511)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~ 137 (511)
+......+ +..++........+|.+.++ + .+..+.|++.+++.++..+ ++++|+++||+ +||++++++.++
T Consensus 30 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~~~~ 101 (451)
T 1pw4_A 30 FLGIFFGY-AAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHH-HHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHHHHHH
Confidence 34444444 55555555666677877666 8 9999999999999999888 99999999996 788899999999
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 037870 138 GCVSALMFSL----LGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGF 213 (511)
Q Consensus 138 ~~~~~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~ 213 (511)
.+++.+++++ +++... +++.+++.|++.+...+...+++.|..+ +++|+++.++.+.+.++|.++||.++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAV--MFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSH--HHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHH--HHHHHHHHHHHhhhccchHHHHHHHHCC--chhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 777654 5677999999999999999999999984 4569999999999999999999999999
Q ss_pred hhccCC-hhhHHHHhhhHHHHH-HHHHhhcccccccccchhhh---hh-------hhhHHHHHHH--HHHhccCCcchHH
Q 037870 214 SVNHLG-PQGALGVLAIPPVLL-IVLGFVIYETRSANIRSEKK---KV-------MENVEFTTKG--MYKSMKCPQVWKP 279 (511)
Q Consensus 214 l~~~~g-w~~~f~~~~~~~~i~-~~~~~~~~e~~~~~~~~~~~---~~-------~~~~~~~~~~--~~~~l~~~~~~~~ 279 (511)
+.+..| ||+.|++.+++.++. ++.++++||++.+....+++ +. .++.+...++ .++.+++|.++..
T Consensus 178 l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (451)
T 1pw4_A 178 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYI 257 (451)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHH
Confidence 998898 999999998887764 44556777765432111000 00 0000000111 3567788888877
Q ss_pred HHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHhh
Q 037870 280 SLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDY--PLRNLLFSAQLLYGISG 357 (511)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~l~~~~~~~~~~~ 357 (511)
.+..++............+.+..+. .|++..+.|.+.....++.+++.++.+++.||+ ++|+.+..+..+....+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 258 AIANVFVYLLRYGILDWSPTYLKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTB---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 6665555443333333333344332 689999999999999999999999999999999 99888877655544222
Q ss_pred hhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHH-HHhHHHHHHHHHH
Q 037870 358 MLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSI-GSLTSKWGGGIVL 436 (511)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~l-g~~~g~~l~g~l~ 436 (511)
+...... .....+.......+.++..+........+..|.+|++.+|+++|+.+...++ |..+++.+.|.+.
T Consensus 335 ~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 335 TIVYWMN-------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp HHHTTSC-------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111110 0112233333334455555555666678889999999999999999999999 9999999999999
Q ss_pred HHhc
Q 037870 437 HLLH 440 (511)
Q Consensus 437 ~~~g 440 (511)
+..|
T Consensus 408 ~~~g 411 (451)
T 1pw4_A 408 DFFG 411 (451)
T ss_dssp HSSC
T ss_pred HhcC
Confidence 8655
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=252.15 Aligned_cols=341 Identities=9% Similarity=0.065 Sum_probs=252.3
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHH-
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMF- 145 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~- 145 (511)
+..++......+.+|.+.++ +|++..+.|++.+++.+++.+ +|++|+++||+ +||+.++.+.++.+++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHH
Confidence 55555555666677776554 999999999999999999887 99999999996 78889999999999998888
Q ss_pred --HhcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhh-ccCC---
Q 037870 146 --SLLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSV-NHLG--- 219 (511)
Q Consensus 146 --~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~-~~~g--- 219 (511)
+++++.+. +++.+++.|++.+...+...+++.|..+ +++|++..++.+.+.++|.++|+.+++.+. +..+
T Consensus 110 ~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 110 PAAEIMNYTL--FLVGLFIIAAGLGCLETAANPFVTVLGP--ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHTTCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSSC--STTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred hccccccHHH--HHHHHHHHHhhHHHhhhhHHHHHHHHcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 77776554 6788999999999999999999999984 466999999999999999999999999998 5554
Q ss_pred ----------------------hhhHHHHhhhHHHHHHHHHhhc--ccccccccchhhhhhhhhHHHHHHHHHHhccCCc
Q 037870 220 ----------------------PQGALGVLAIPPVLLIVLGFVI--YETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQ 275 (511)
Q Consensus 220 ----------------------w~~~f~~~~~~~~i~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (511)
||+.|++.++..++..+..++. ||++++.++++++ + +..+..++.+|+|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~---~~~~~~~~~~~~~~ 259 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ---G---SFSASLSRLARIRH 259 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST---T---SHHHHHHHHTTCSH
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc---c---chhhhHHHHHhChH
Confidence 9999988877766644433333 4443322111101 1 11245667888999
Q ss_pred chHHHHHHHHHhhhccCcccceeee-eecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 037870 276 VWKPSLYMYLSLAVSISTHEGQFYW-YTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYG 354 (511)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~ 354 (511)
++...+..++............+.+ ..+. +|+++.+.+.+.....++.+++.++.+++.||+++|+.+..+.++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEI---PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAM 336 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8887776655544333332333344 4443 58999999999988999999999999999999999998888766555
Q ss_pred HhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHH
Q 037870 355 ISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGI 434 (511)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~ 434 (511)
+..+... . .+..... ....+.+++.+...+....+..|..|++ +++..++.. ...+|..++|.+.|.
T Consensus 337 ~~~~~~~-~---------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~ 403 (438)
T 3o7q_A 337 ALCLISA-F---------AGGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_dssp HHHHHHH-H---------CCHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred HHHHHHH-H---------cCCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence 4322211 1 1111111 2223455566666667777778888866 888888777 778999999999999
Q ss_pred HHHHhc
Q 037870 435 VLHLLH 440 (511)
Q Consensus 435 l~~~~g 440 (511)
+.+..|
T Consensus 404 l~~~~g 409 (438)
T 3o7q_A 404 VSDAAG 409 (438)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999887
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=241.10 Aligned_cols=398 Identities=14% Similarity=0.120 Sum_probs=248.2
Q ss_pred hcccccccchhhhhhhhhhccc--------CCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQ--------KVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAG 138 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~ 138 (511)
+..|++.+..+..+|.+..+ + +.+..+.|++.+++.++..+ .+++|+++||+ +||+.++++.+++
T Consensus 22 ~~~Gyd~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-----GRk~~l~~~~~l~ 95 (491)
T 4gc0_A 22 LLFGYDTAVISGTVESLNTV-FVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GRRDSLKIAAVLF 95 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHH-HTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHH
Confidence 55566555555566654332 3 23456778999999999988 88899999995 7999999999999
Q ss_pred HHHHHHHHhcC----------------ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHH
Q 037870 139 CVSALMFSLLG----------------KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAA 202 (511)
Q Consensus 139 ~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 202 (511)
.++.+++++++ ..+...+++.|+++|+|.+...+....++.|.. ++++|++..+..+.+..+
T Consensus 96 ~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~--p~~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 96 FISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA--PAHIRGKLVSFNQFAIIF 173 (491)
T ss_dssp HHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CHHhhhhhHHhhhhhhhh
Confidence 99999988532 113445788999999999999999999999998 446799999999999999
Q ss_pred HHHHHHHHHHHhhcc--------CChhhHHHHhhhHHHHHHHHHhhcccccccccchhhh----h----------hhh--
Q 037870 203 GSLIGYAVSGFSVNH--------LGPQGALGVLAIPPVLLIVLGFVIYETRSANIRSEKK----K----------VME-- 258 (511)
Q Consensus 203 G~~lg~~~~g~l~~~--------~gw~~~f~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~----~----------~~~-- 258 (511)
|.++++.++..+... .+||..+.+..+..++..+..+++||+++....+.+. + ..+
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 174 GQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 999999888776542 3577787777777777777778899987542111000 0 000
Q ss_pred -hHHHHHH------HHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 037870 259 -NVEFTTK------GMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVL 331 (511)
Q Consensus 259 -~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 331 (511)
+.++... .....++.+.........++...... ....+|........+.+............+..+++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGI---NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhh---hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHH
Confidence 0000000 01112222322222222222221111 1111121111111456666666666777788889999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHH-HHHHhhcCCCcch
Q 037870 332 IYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPM-IVLSTRLCPIGIE 410 (511)
Q Consensus 332 ~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~ 410 (511)
+.+++.||+|+|+.+..+.....+..+....... ........+....+.....+....|. ..+.+|+.|.+.|
T Consensus 331 ~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R 404 (491)
T 4gc0_A 331 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 404 (491)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence 9999999999999988876665543332221111 01111222222223333334444443 4677899999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH-HHhhcCCCCcCcCccchhh
Q 037870 411 GTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLG-LIFLVPKADQSDELIPVDL 484 (511)
Q Consensus 411 g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 484 (511)
++++|+.++.+++++.+++.+.+.+.+...... .+. ....+.+.+++.+++.+ ..+++||+|++..+..++.
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~-~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFH-NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 999999999999999999998887755322110 000 11233344444444444 4458999998765433333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=237.62 Aligned_cols=351 Identities=12% Similarity=0.041 Sum_probs=224.6
Q ss_pred chhhhhhhhhhcc-----cCCChHHHHHHHHHhhcchhh-hhHHHhhhcc-cccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 76 FSKVVTDYYWKDV-----QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDA-FPIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 76 ~~~~~~~~~~~~~-----~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~-~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
.....++.|++++ +|.+..+.|++.+++.++..+ ++++|+++|| + +||+.++.+.++..++.++++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~~~~~~~~~~~~~~~~~~~~ 105 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARPAVFWGGVLIMLGHIVLALP 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777776 999999999999999999887 9999999999 6 68889999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhh
Q 037870 149 GKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLA 228 (511)
Q Consensus 149 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~ 228 (511)
++... +++.+++.|++.+...+...+++.|..+++++.|++..++++.+.++|..+||.+++.+.++.|||+.|++.+
T Consensus 106 ~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 106 FGASA--LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp CSTTH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhHHH--HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 87654 5677889999999999999999999986544457888888999999999999999999999999999999987
Q ss_pred hHHHHHHHHHhhc-ccccccc----cch-hhhhhhhhHHH----------------------------------------
Q 037870 229 IPPVLLIVLGFVI-YETRSAN----IRS-EKKKVMENVEF---------------------------------------- 262 (511)
Q Consensus 229 ~~~~i~~~~~~~~-~e~~~~~----~~~-~~~~~~~~~~~---------------------------------------- 262 (511)
+..++..+..++. ++..++. .+. ++++..+..+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (491)
T 4aps_A 184 IGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVF 263 (491)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHH
Confidence 7666544333322 2211110 000 00000000000
Q ss_pred ----HHHHHH--HhccCCc--chHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 037870 263 ----TTKGMY--KSMKCPQ--VWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYH 334 (511)
Q Consensus 263 ----~~~~~~--~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~ 334 (511)
..++.. ...+++. .+...+..++............+.+..+. .+.+....+.+.....++.+++..+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (491)
T 4aps_A 264 YFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER---VDSSWFPVSWFQSLNPLFIMLYTPFFA 340 (491)
T ss_dssp HHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS---CCCSSSCSGGGTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH---hccCccCHHHHhccchHHHHHHHHHHH
Confidence 000000 0011111 12222222222222222222333333332 344434455555667777888888899
Q ss_pred HHhccCCChHHHH-----HHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcc
Q 037870 335 KTLKDYPLRNLLF-----SAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGI 409 (511)
Q Consensus 335 ~l~~r~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 409 (511)
++.||+++|+... .+.++..++.+.......... .......+..+....+.++..+...++...+..|..|++.
T Consensus 341 ~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 419 (491)
T 4aps_A 341 WLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG-TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF 419 (491)
T ss_dssp HHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC-CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence 9999998875543 333333332222111110000 0001122333334445566666667778889999999999
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037870 410 EGTFFALLMCIDSIGSLTSKWGGGIVLH 437 (511)
Q Consensus 410 ~g~~~gl~~~~~~lg~~~g~~l~g~l~~ 437 (511)
||+++|+.+...++|..+++.+.+.+.+
T Consensus 420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 420 NSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-29 Score=241.53 Aligned_cols=343 Identities=13% Similarity=0.073 Sum_probs=245.4
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+..++......+.+|.+.++ +|.+..+.|++.++..++..+ +|++|+++||+ +||+.++.+.++..++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHH
Confidence 34444555556677776555 999999999999999999887 99999999996 677788888888889888888
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 037870 147 LLGKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGV 226 (511)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~ 226 (511)
++++.. .++..+++.+++.+...+...+++.|..+ +++|++..++.+.+.++|..++|.+++++.++.|||+.|++
T Consensus 84 ~~~~~~--~l~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 84 TTSSLT--VLIAASAMQGMGTGVGGVMARTLPRDLYE--RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HhccHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 877543 46778999999999999999999999874 46699999999999999999999999999998899999999
Q ss_pred hhhHHHHHHH-HHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCC
Q 037870 227 LAIPPVLLIV-LGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPK 305 (511)
Q Consensus 227 ~~~~~~i~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (511)
.++..++..+ ..+++||++++++++ ++. .++.++.+|+|.++...+..++............+.+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 229 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVDAPR--TRL-------LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV- 229 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTTCCC--CCT-------TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-
T ss_pred HHHHHHHHHHHHHHHCcccCCCCccc--ccH-------HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888777554 556677765443221 100 01234455667666665555444433322222233333332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHH
Q 037870 306 AGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 385 (511)
Q Consensus 306 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (511)
.|+++.+.|.+.....++.+++.++.+++.||.+++ +..+..+....++......... .++.+..+....+
T Consensus 230 --~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l 300 (375)
T 2gfp_A 230 --LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFG-----VMNVWTLLVPAAL 300 (375)
T ss_dssp --HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH-----HHHHHHHHHHHHH
T ss_pred --hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc-----cccHHHHHHHHHH
Confidence 578888999999888899999999999999987762 2222222122111111111000 0112222333445
Q ss_pred HHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 386 SHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
.++..+...+.......|..| +++|+++|+.+...++|..+++.+.|.+.+..+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 566667777777888889998 899999999999999999999999999987644
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=241.89 Aligned_cols=366 Identities=12% Similarity=0.081 Sum_probs=212.7
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHH---HHHHhcCCh
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSA---LMFSLLGKL 151 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~---~~~~~~~~~ 151 (511)
...+.+|.++++++|.|+.++|++.+...++..+ +|++|+++||+ +||+.++.+..+..++. ....+.+..
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688888877999999999999999999887 99999999996 56667766665543321 111111100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHH
Q 037870 152 PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPP 231 (511)
Q Consensus 152 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~ 231 (511)
. ......+.+.+++.+.......+...+..++.+++++...+..+.+.++|..++|.+++++.+ .+||+.|++.++..
T Consensus 100 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 100 Q-YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp H-TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred H-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 0 001112223233222222222233333332222346767777777788999999999999987 58999999877765
Q ss_pred HHHHHHHhhccccccccc-chhh-hhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeecCCCCCC
Q 037870 232 VLLIVLGFVIYETRSANI-RSEK-KKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPA 309 (511)
Q Consensus 232 ~i~~~~~~~~~e~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 309 (511)
++..+..++.+|++++.. +.++ ++..++ ...++.++.+++|.++...+..+.............+.+.....+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPSSATVANAVGANHSA--FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE 255 (417)
T ss_dssp TTHHHHSCSSCCCCSCSSCSSSSSSSCCCC--CCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHcCccccccccccccccccccc--ccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 544444444443331110 0000 000000 112345567888887766554333222111111112222222211112
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHHH
Q 037870 310 FSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHII 389 (511)
Q Consensus 310 ~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (511)
.+....|.+..+..++.+++.++.+++.||+++|+.+..+..+..+..+ .... .++.+..+....+.++.
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII---GSSF-------ATSALEVVILKTLHMFE 325 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHTT-------CCSHHHHHHHTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHH-------hccHHHHHHHHHHHHHH
Confidence 3345567777777888889999999999999999988776555443211 1110 11222222222233333
Q ss_pred HHhhHhHHHHHHhhcCCCcchHHHHHH-HHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHh
Q 037870 390 SKIRWIPMIVLSTRLCPIGIEGTFFAL-LMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLGLIF 468 (511)
Q Consensus 390 ~~~~~~~~~~~~~~~~p~~~~g~~~gl-~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (511)
.+....+...+..|..|++.||+.+|+ ++...++|+.++|.++|.+.+..|+ ...+.+.+++.+++.+...
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHH
Confidence 444445556788899999999999999 4888889999999999999886542 2334444555555554443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=206.71 Aligned_cols=156 Identities=10% Similarity=0.100 Sum_probs=127.7
Q ss_pred chhhhhhhhhhcccC------CChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhc
Q 037870 76 FSKVVTDYYWKDVQK------VQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLL 148 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g------~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~ 148 (511)
.....++.++++++| .+..+.|++.+++.++..+ .+++|+++||+ .+||+.++.+.++.+++.++++++
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHh
Confidence 344567777777799 9999999999999999887 89999999994 167888888888999998888888
Q ss_pred C-ChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHH---HHHHHHHHHHHHHHHHHHHhhccCChhhHH
Q 037870 149 G-KLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQS---LCGFCSAAGSLIGYAVSGFSVNHLGPQGAL 224 (511)
Q Consensus 149 ~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f 224 (511)
+ +... +++.+++.+++.+...+...+++.|..++ ++|++..+ +.+.+.++|.++||.+++.+.+..|||+.|
T Consensus 106 ~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 106 EHSVQG--FYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp SSCHHH--HHHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred cccHHH--HHHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 7 6543 56778899999999889999999998843 44655444 488999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHh
Q 037870 225 GVLAIPPVLLIVLGF 239 (511)
Q Consensus 225 ~~~~~~~~i~~~~~~ 239 (511)
++.++..++..+..+
T Consensus 182 ~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 182 GIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998877666444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=129.59 Aligned_cols=166 Identities=14% Similarity=0.113 Sum_probs=124.1
Q ss_pred cccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHH-HHHHHHHhc
Q 037870 71 GFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGC-VSALMFSLL 148 (511)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~-~~~~~~~~~ 148 (511)
.........+.|.++++.+|.+..+.+++.+...++..+ .++.|+++||+. + +||+.+..+..+.. ++.+++.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 265 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF--R-GNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--T-TCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CCchhHHHHHHHHHHHHHHHHHHh
Confidence 333344566788888887999999999999998888777 889999999951 0 45666665555554 666666665
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHH-HHHHHHHHHHHhhccCChhhHHHHh
Q 037870 149 GKLPIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAA-GSLIGYAVSGFSVNHLGPQGALGVL 227 (511)
Q Consensus 149 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~~~g~l~~~~gw~~~f~~~ 227 (511)
++.+........++.+++.+...+....++.|..+ +++|+++.++.+...++ |..++|.+.|++.+..||+..|++.
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 419 (451)
T 1pw4_A 342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP--KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 419 (451)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 43333334555666677777777767788888874 45699999999999999 9999999999999999999999998
Q ss_pred hhHHHHHHHHHhhc
Q 037870 228 AIPPVLLIVLGFVI 241 (511)
Q Consensus 228 ~~~~~i~~~~~~~~ 241 (511)
+++.++..+..++.
T Consensus 420 ~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 420 IGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88777754444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.5e-10 Score=112.35 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=99.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKD-YPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 386 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (511)
+|++..+.|++.+...++..++.++.|++.|| +|+|+.+..+.++..+..+.. .. .++.+..+...++.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~l~ 118 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL---AL-------PFGASALFGSIILI 118 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH---HS-------CCSTTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH---HH-------hhhHHHHHHHHHHH
Confidence 68999999999999999999999999999999 899999998876665533221 11 12333444455566
Q ss_pred HHHHHhhHhHHHHHHhhcCCCcc--hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 387 HIISKIRWIPMIVLSTRLCPIGI--EGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~p~~~--~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
+++.+...+....++.|..|+++ |++.+++.+...++|..++|.+++.+.+..|
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77777788888899999999988 8888999999999999999999999998755
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-10 Score=110.87 Aligned_cols=149 Identities=13% Similarity=0.007 Sum_probs=112.7
Q ss_pred chhhhhhhh-hhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhH
Q 037870 76 FSKVVTDYY-WKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPI 153 (511)
Q Consensus 76 ~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~ 153 (511)
....++|.| +++.+|.+..+.+++.+...+...+ .++.|+++||+ +||+.+..+.++..++.+++.+.++...
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGGHVG 350 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 345577888 8887799999999999998888777 88999999996 6777888888888888888777775432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHhhhHHH
Q 037870 154 AIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLG-PQGALGVLAIPPV 232 (511)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~g-w~~~f~~~~~~~~ 232 (511)
+...++.+++.+...+...++..+..+++ ++...++.. ...+|..++|.+.|++.+..| ++..|++.++..+
T Consensus 351 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 351 ---LIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp ---HHHHHHHHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 23335566776666777777777766432 566666655 566999999999999999998 9999987655544
Q ss_pred HHHH
Q 037870 233 LLIV 236 (511)
Q Consensus 233 i~~~ 236 (511)
+..+
T Consensus 424 ~~~~ 427 (438)
T 3o7q_A 424 VIFI 427 (438)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.7e-10 Score=109.70 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=108.6
Q ss_pred hhhhhhhhcccC---CChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHH
Q 037870 79 VVTDYYWKDVQK---VQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIA 154 (511)
Q Consensus 79 ~~~~~~~~~~~g---~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (511)
.++|.++++.++ .+..+.++..++..+...+ .++.|+++||+ +||+.+..+.++.++..+..++.++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~- 314 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATSALE- 314 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCCSHHH-
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhccHHH-
Confidence 346666665444 2345567776666666555 78899999996 5777777777777777767766665332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHH-HHHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHH
Q 037870 155 IALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSL-CGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVL 233 (511)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i 233 (511)
+++..++.+++.+...+....++.|..+ ++.|++.++. ++....+|..+||.++|++.++.|++..|.+.+++.++
T Consensus 315 -~~~~~~l~~~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~ 391 (417)
T 2cfq_A 315 -VVILKTLHMFEVPFLLVGCFKYITSQFE--VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391 (417)
T ss_dssp -HHHHTTHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3333444555555444555667777764 3558888887 47788899999999999999988999999988877776
Q ss_pred HHH-HHhhcccccc
Q 037870 234 LIV-LGFVIYETRS 246 (511)
Q Consensus 234 ~~~-~~~~~~e~~~ 246 (511)
..+ .++..||+++
T Consensus 392 ~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 392 FTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHTTSSCCSCT
T ss_pred HHHHHHhhhcCCCc
Confidence 444 3444565443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-09 Score=108.34 Aligned_cols=142 Identities=9% Similarity=-0.047 Sum_probs=103.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhccC-CChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHHH
Q 037870 310 FSQEFVGLIYALGAVASMIGVLIYHKTLKDY-PLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHI 388 (511)
Q Consensus 310 ~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (511)
++..+.|++.....++..++.++.|++.||+ |+|+.+..+.++..+..+.... . ..+.+..+...++.++
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~l~g~ 121 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI-F--------EHSVQGFYTGLFLIAL 121 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH-T--------SSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-h--------cccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 9999988876666543322111 0 1133334444556677
Q ss_pred HHHhhHhHHHHHHhhcCCCcchHHHHHH---HHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Q 037870 389 ISKIRWIPMIVLSTRLCPIGIEGTFFAL---LMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLATLG 465 (511)
Q Consensus 389 ~~~~~~~~~~~~~~~~~p~~~~g~~~gl---~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (511)
+.+...++..+++.|.+|+++|++..+. .+...++|..++|.+++.+.+..| +...+.+..++.+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 122 GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--------AAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--------HHHHHHHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------HHHHHHHHHHHHHHHHH
Confidence 7788888888999999999999765555 889999999999999999887543 23344444444444444
Q ss_pred HHh
Q 037870 466 LIF 468 (511)
Q Consensus 466 ~~~ 468 (511)
...
T Consensus 194 ~~~ 196 (524)
T 2xut_A 194 FFW 196 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.6e-10 Score=106.38 Aligned_cols=123 Identities=10% Similarity=0.050 Sum_probs=99.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHHHHHH
Q 037870 308 PAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSH 387 (511)
Q Consensus 308 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (511)
+|.++.+.|++.....++..++.+..|++.||+|+|+.+..+..+..+..+..... ++.+..+...++.+
T Consensus 30 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----------SSLTVLIAASAMQG 99 (375)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999998876666543332211 12233344455667
Q ss_pred HHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 037870 388 IISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLH 440 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g 440 (511)
+..+...+....++.|..|+++|++.+++.+...++|..+++.+++++.+..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 77777777888899999999999999999999999999999999999876554
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-10 Score=110.70 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=112.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhccc-----c---cCCCchhhhhHH
Q 037870 311 SQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNL-----A---LGIPDSFFVITE 382 (511)
Q Consensus 311 s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~ 382 (511)
+..+.|++.+...+|.++|.++.|++.||+|||+.+.++.++..++.+........... . ...++....++.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 45567778788899999999999999999999999999877776654433211100000 0 001233345566
Q ss_pred HHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Q 037870 383 QCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIGSLTSKWGGGIVLHLLHVTRTDFTNLWLVILIRNVLRLA 462 (511)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg~~~g~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 462 (511)
-++.+++.+...+....+++|.+|+++||...++.+....+|..++..++..+....+........+...+.+..+..++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 67888888888888889999999999999999999999999988888887777655443322222333344444444555
Q ss_pred HHHHHhhcCCC
Q 037870 463 TLGLIFLVPKA 473 (511)
Q Consensus 463 ~~~~~~~~~~~ 473 (511)
.++..+++||.
T Consensus 213 ~~~~~~~~peS 223 (491)
T 4gc0_A 213 FLMLLYTVPES 223 (491)
T ss_dssp HHHHGGGSCCC
T ss_pred hhhhhhcCCCC
Confidence 55555567765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 511 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.003 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (85), Expect = 0.003
Identities = 44/382 (11%), Positives = 107/382 (28%), Gaps = 16/382 (4%)
Query: 60 FGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPS-VMKPIWGLFTD 118
F + ++ F + D+ + S I L S + +P++GL +D
Sbjct: 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68
Query: 119 AFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGIAIADVVIDACI 178
G + ++I G+ + + G L L S+ + +
Sbjct: 69 KL---GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125
Query: 179 ARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLIVLG 238
++ + G +G ++ G +L ++L
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185
Query: 239 FVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQF 298
F + S+ + + F+ K + + P++W SLY+ +
Sbjct: 186 FAKTDAPSSATVANAVGANHS-AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFA 244
Query: 299 YWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGM 358
++T A G + +G + + + + +N L A + + +
Sbjct: 245 NFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304
Query: 359 LDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM 418
+ + F + + T + T + +
Sbjct: 305 GSSFATSALEVVILKTLHMFEVP----------FLLVGCFKYITSQFEVRFSATIYLVCF 354
Query: 419 CI-DSIGSLTSKWGGGIVLHLL 439
C + + G + +
Sbjct: 355 CFFKQLAMIFMSVLAGNMYESI 376
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 511 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.95 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.35 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.23 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.9e-30 Score=256.83 Aligned_cols=370 Identities=11% Similarity=0.018 Sum_probs=248.1
Q ss_pred cCchhHHHHHHHHhhcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHH
Q 037870 54 LNSTFIFGIILVYGLSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFV 132 (511)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~ 132 (511)
++|.++..+.+.+ +.............|. +++ +|+|.+++|++.+++.+++.+ ++++|+++||+ +||+.+.
T Consensus 22 ~~w~i~~~~~~~~-~~~~~~~~~~~~~~p~-~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~r~~~~ 93 (447)
T d1pw4a_ 22 LRWQIFLGIFFGY-AAYYLVRKNFALAMPY-LVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLP 93 (447)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHTSHHHHHHH-TTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHH
Confidence 4566666666655 4444333334445554 455 899999999999999999888 89999999995 7888999
Q ss_pred HHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHH
Q 037870 133 IAGVAGCVSALMFSLLGKL--PIAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAV 210 (511)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~ 210 (511)
.+.++.+++.+++++++.. +...+++.+++.+++.+...+...+++.|..+ +++|++++++.+.+..+|.++++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~i~~~~ 171 (447)
T d1pw4a_ 94 AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGIPPLL 171 (447)
T ss_dssp HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--hhcccccccccccccchhhhhhhhh
Confidence 9999998888888776422 12336777889999999888888999999884 4669999999999999999999999
Q ss_pred HHHhhcc-CChhhHHHHhhhHHHHHH-HHHhhcccccccccchh---h-----hhh----hhhHHHHHHHHHHhccCCcc
Q 037870 211 SGFSVNH-LGPQGALGVLAIPPVLLI-VLGFVIYETRSANIRSE---K-----KKV----MENVEFTTKGMYKSMKCPQV 276 (511)
Q Consensus 211 ~g~l~~~-~gw~~~f~~~~~~~~i~~-~~~~~~~e~~~~~~~~~---~-----~~~----~~~~~~~~~~~~~~l~~~~~ 276 (511)
++.+.+. .+||+.|++.+++.++.. +.+++.+|++.+..... . ++. .++........+..++++.+
T Consensus 172 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (447)
T d1pw4a_ 172 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL 251 (447)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred hhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchH
Confidence 9887765 479999999888777744 44455555443221100 0 000 00000011234556777777
Q ss_pred hHHHHHHHHHhhhccCcccceeeeeecCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 037870 277 WKPSLYMYLSLAVSISTHEGQFYWYTDPKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGIS 356 (511)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~ 356 (511)
+......++............+.+..+. .+++..+.+.......++.+++.++.+++.||.++++............
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 328 (447)
T d1pw4a_ 252 WYIAIANVFVYLLRYGILDWSPTYLKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 328 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTB---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcchhhhhhhcccc---cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHH
Confidence 7666555544433322222223333333 6889999999999999999999999999999998765444333322221
Q ss_pred hhhhHHHhhhcccccCCCchhhhhHHHHHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHHHHHHHH-HhHHHHHHHHH
Q 037870 357 GMLDLIFILRWNLALGIPDSFFVITEQCVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLMCIDSIG-SLTSKWGGGIV 435 (511)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~~~~~lg-~~~g~~l~g~l 435 (511)
......... ....+.+..+...++.++..+...........|..|++.+|+++|+.+...+++ ..++|.+.|.+
T Consensus 329 ~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~ 403 (447)
T d1pw4a_ 329 TIATIVYWM-----NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 403 (447)
T ss_dssp HHHHHHTTS-----CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 111222333333334444445555566677889999999999999999998875 56689999999
Q ss_pred HHHhcc
Q 037870 436 LHLLHV 441 (511)
Q Consensus 436 ~~~~g~ 441 (511)
.+.+|+
T Consensus 404 ~~~~g~ 409 (447)
T d1pw4a_ 404 VDFFGW 409 (447)
T ss_dssp HHSSCS
T ss_pred HHHhCh
Confidence 997653
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5e-27 Score=228.73 Aligned_cols=357 Identities=12% Similarity=0.073 Sum_probs=220.2
Q ss_pred hcccccccchhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHH
Q 037870 68 LSQGFSGSFSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFS 146 (511)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~ 146 (511)
+...+..+...+.+|.++++++|+|++++|++.+++.++..+ +|++|+++||+ +||+.++++.....++..+..
T Consensus 17 f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-----grr~~l~~~~~~~~~~~~~~~ 91 (417)
T d1pv7a_ 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----TTCTHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHH
Confidence 333444445566788888888999999999999999999887 99999999996 677788888777777777777
Q ss_pred hcCChhHHH--HHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHhhccCChhhHH
Q 037870 147 LLGKLPIAI--ALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAAGSLIGYAVSGFSVNHLGPQGAL 224 (511)
Q Consensus 147 ~~~~~~~~~--~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~~~g~l~~~~gw~~~f 224 (511)
+.++..... .+..+.+.+.+.+...........+...++.+++.+..+........+..+++.+++.+.+. +|+..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 170 (417)
T d1pv7a_ 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVF 170 (417)
T ss_dssp HHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccc
Confidence 665433211 11222222222222222222222222222233456667777788889999999999988875 455555
Q ss_pred HHhhhHHHH-HHHHHhhcccccccccchhhhhhhhhHHHHHHHHHHhccCCcchHHHHHHHHHhhhccCcccceeeeeec
Q 037870 225 GVLAIPPVL-LIVLGFVIYETRSANIRSEKKKVMENVEFTTKGMYKSMKCPQVWKPSLYMYLSLAVSISTHEGQFYWYTD 303 (511)
Q Consensus 225 ~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (511)
........+ ..+..+..+|++....+.++++...+ ........+.++++..+......................+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T d1pv7a_ 171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS-AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249 (417)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCC-CCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcc-cccccccccccccccccchhhhhHHHHHHHHhhhccccccccc
Confidence 555444444 45555666665544332221111000 0111223344445544433332222221111111111111112
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhhhHHHhhhcccccCCCchhhhhHHH
Q 037870 304 PKAGPAFSQEFVGLIYALGAVASMIGVLIYHKTLKDYPLRNLLFSAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQ 383 (511)
Q Consensus 304 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (511)
.....+.+....+.......++..++..+.+++.||.++++.+..+.++..+..+. +.. .++.+..+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~ 319 (417)
T d1pv7a_ 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG---SSF-------ATSALEVVILK 319 (417)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHH---HHT-------CCCHHHHHHHH
T ss_pred cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhc---ccc-------ccccchhhHHH
Confidence 11223455666677778888889999999999999999999988876665543221 111 23334444455
Q ss_pred HHHHHHHHhhHhHHHHHHhhcCCCcchHHHHHHHH-HHHHHHHhHHHHHHHHHHHHhcc
Q 037870 384 CVSHIISKIRWIPMIVLSTRLCPIGIEGTFFALLM-CIDSIGSLTSKWGGGIVLHLLHV 441 (511)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gl~~-~~~~lg~~~g~~l~g~l~~~~g~ 441 (511)
.+.++..+...++...+++|.+|++.||+++|+.. ....+|..++|.+.|++.|.+|+
T Consensus 320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 56677777888888889999999999999999864 56679999999999999998874
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=7.6e-12 Score=121.74 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=106.8
Q ss_pred chhhhhhhhhhcccCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchH--HHHHHHHHHHHHHHHHhcCChh
Q 037870 76 FSKVVTDYYWKDVQKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPY--FVIAGVAGCVSALMFSLLGKLP 152 (511)
Q Consensus 76 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~--l~~~~~~~~~~~~~~~~~~~~~ 152 (511)
....+.|.++.+.++.+..+.++..+...+...+ .++.|+++||+. +|++. ......+..++..........+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
T d1pw4a_ 267 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF----RGNRGATGVFFMTLVTIATIVYWMNPAGN 342 (447)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCHHHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred cchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcc----ccccccccchhHHHHHHHHHHHHhccccc
Confidence 3455778888888999999999999888887777 888999999973 22222 2222222222333323333323
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhcchhhhccccchHHHHHHHHHH-HHHHHHHHHHHhhccCChhhHHHHhhhHH
Q 037870 153 IAIALACSVGISAGIAIADVVIDACIARNSIEIRALAPDMQSLCGFCSAA-GSLIGYAVSGFSVNHLGPQGALGVLAIPP 231 (511)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~~~g~l~~~~gw~~~f~~~~~~~ 231 (511)
.....+..++.+++.+...+....+..|..+ ++.|+++.++.+...++ |.+++|.+.|++.+++||+..|++.++..
T Consensus 343 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 420 (447)
T d1pw4a_ 343 PTVDMICMIVIGFLIYGPVMLIGLHALELAP--KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 420 (447)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 3334555556677666666667777788774 45689999988877776 56778999999999999999998887766
Q ss_pred HHHH
Q 037870 232 VLLI 235 (511)
Q Consensus 232 ~i~~ 235 (511)
++..
T Consensus 421 ~~~~ 424 (447)
T d1pw4a_ 421 ILAV 424 (447)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=4e-11 Score=114.67 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=114.3
Q ss_pred cCCChHHHHHHHHHhhcchhh-hhHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 037870 89 QKVQPSVVQIYIGLCYLPSVM-KPIWGLFTDAFPIKGYHRRPYFVIAGVAGCVSALMFSLLGKLPIAIALACSVGISAGI 167 (511)
Q Consensus 89 ~g~s~~~~g~~~s~~~l~~~~-~~~~G~l~D~~~~~g~~Rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 167 (511)
.+.+....+...+...+...+ .++.+++.||. +||+.+..+.++.+++.+.+.+.++... .++..++.+++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~g~~~ 326 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATSALE--VVILKTLHMFEV 326 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHTCCCHHH--HHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhccc-----ccccchhhhHHHHHHhhhccccccccch--hhHHHHHHHHHH
Confidence 445566666666666666655 78899999996 6788888888888888888888886554 455566778888
Q ss_pred HHHHHHHhHHHhhcchhhhccccchHHHH-HHHHHHHHHHHHHHHHHhhccCChhhHHHHhhhHHHHHH-HHHhhccccc
Q 037870 168 AIADVVIDACIARNSIEIRALAPDMQSLC-GFCSAAGSLIGYAVSGFSVNHLGPQGALGVLAIPPVLLI-VLGFVIYETR 245 (511)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~G~~lg~~~~g~l~~~~gw~~~f~~~~~~~~i~~-~~~~~~~e~~ 245 (511)
+...+...+++.|..+ ++.|++..+.. +....+|..++|.++|++.+++|++..|++.+++.++.. +..+.+++++
T Consensus 327 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 327 PFLLVGCFKYITSQFE--VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHSC--GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 8888888888888874 45689988875 456779999999999999999999999999888877744 4445555443
|