Citrus Sinensis ID: 037934

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MTPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSLQSHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDRETLVEDNPLIRADKLEGRI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHcccEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHEcccccEEEccccEEEcccccccHHHHHHHccEEEEcHccccc
Coil and Loop (DISEMBL)
mtpplctkgcgfygtkehksmcsncyndfleeqvtdgvvkrplklmqpnpsilvfdprslqshssssserttIDSAAVEYSSAKTTSALEKRCEICDkkvgsielkcrcghlycgthrkfdretlvednpliradklegri
Flexible Loop (DISEMBL)
mtpplctkGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSLQShssssserttidsaaveyssakttsalekrCEICDKKVGSIELKCRCGHLYCGthrkfdretlvednpliradklegri
Low Complexity Region (SEG)
MTPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRslqshsssssERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDRETLVEDNPLIRADKLEGRI
Disordered region (IsUnstruct)
****LCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLM*****ILV**********************************LEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDRETLVE**************
Disordered Region (DISOPRED)
**PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPN********************************************EICDKKVGSIELKCRCGHLYCGTHRKFDRETLVEDNPLIRADKLEG**
Disordered Region (DISEMBL)
MTPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDP*****************SAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDRETLVEDNPLIRADKLEGRI
Disordered Region (DISPRO)
*TPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ********************************************************EKRCEICDKKVGSIELKCRCGHLYCGTHRKFDRETLVEDNPLIRADKL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSLQSHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDRETLVEDNPLIRADKLEGRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
O49663	176	Zinc finger A20 and AN1 d	yes	no	0.964	0.772	0.314	2e-16
Q6NNI8	168	Zinc finger A20 and AN1 d	no	no	0.943	0.791	0.370	5e-15
Q9STJ9	130	Zinc finger A20 and AN1 d	no	no	0.758	0.823	0.358	2e-14
Q9SZ69	175	Zinc finger A20 and AN1 d	no	no	0.950	0.765	0.306	3e-14
Q852K5	160	Zinc finger A20 and AN1 d	yes	no	0.879	0.775	0.337	1e-13
Q3SZY7	208	AN1-type zinc finger prot	yes	no	0.978	0.663	0.277	5e-13
Q6FIF0	208	AN1-type zinc finger prot	no	no	0.964	0.653	0.280	9e-13
Q5R7S6	208	AN1-type zinc finger prot	yes	no	0.964	0.653	0.280	1e-12
Q9ZNU9	163	Zinc finger A20 and AN1 d	no	no	0.964	0.834	0.289	7e-12
Q3EA33	125	Putative zinc finger A20	no	no	0.751	0.848	0.299	8e-12

>sp|O49663|SAP9_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Arabidopsis thaliana GN=SAP9 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 20/156 (12%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPL-KLMQPNP--SILVFDPRS 59
           P LC KGCGF+G+  +  +CS CY     E+    V K  + K  +P+P  S+ + +P +
Sbjct: 19  PKLCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSLFIAEPPA 78

Query: 60  LQSHSSSSSERTTIDSA-----AVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYC 114
           +            + SA     AV  ++  +  A   RC  C+KKVG +  KC+CG  +C
Sbjct: 79  VVVEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTNRCLCCNKKVGIMGFKCKCGSTFC 138

Query: 115 GTHR-------KFD-----RETLVEDNPLIRADKLE 138
           G HR        FD     R  + + NP+++ADK++
Sbjct: 139 GEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKIQ 174

May be involved in environmental stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6NNI8|SAP1_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 79/154 (51%), Gaps = 21/154 (13%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDF--LEEQVTDG--VVKRPLKLMQP--NPSILVFD 56
           P LC KGCGF+G+  + ++CS CY D    EEQ       V++ L   +P   P      
Sbjct: 16  PKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEI 75

Query: 57  PRSLQSHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGT 116
            + +    SSSS     DSAA      K+T+    RC  C+KKVG    KCRCG  +CGT
Sbjct: 76  TQGVLGSGSSSSSTRGGDSAAAPLDPPKSTAT---RCLSCNKKVGVTGFKCRCGSTFCGT 132

Query: 117 HR-------KFD-----RETLVEDNPLIRADKLE 138
           HR       +FD     RE + + NP+++ADK++
Sbjct: 133 HRYPESHECQFDFKGVAREAIAKANPVVKADKVD 166

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STJ9|SAP10_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 72/145 (49%), Gaps = 38/145 (26%)

Query: 6   CTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSLQSHSS 65
           C  GCG YGT+ + ++CS CY                  ++Q +P+ L F+P + QS   
Sbjct: 10  CEGGCGLYGTRVNNNLCSLCYKK---------------SVLQHSPA-LRFEPETEQSQCC 53

Query: 66  SSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR------- 118
             +     +S AVE    K     ++RC IC +KVG +  KCRCGH++CG+HR       
Sbjct: 54  PPT-----NSPAVEEEPVK-----KRRCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSC 103

Query: 119 KFD-----RETLVEDNPLIRADKLE 138
            FD     R  L    PLIRADKL+
Sbjct: 104 PFDYKQSGRLALATQLPLIRADKLQ 128

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ69|SAP7_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 26/160 (16%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ----VTDGVVKRPLKLMQPNPSILV---- 54
           P LC  GCGF+G+  + ++CS CY     E+    V    VK  LKL  P+ SI+     
Sbjct: 16  PKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLKL--PSCSIIAPGQK 73

Query: 55  ----FDPRSLQSHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCG 110
                 P  L++   ++   +   +A  + +          RC  C+KKVG +  KC+CG
Sbjct: 74  HPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCG 133

Query: 111 HLYCGTHR-------KFD-----RETLVEDNPLIRADKLE 138
             +CG+HR        FD     R+ + + NPL++ADK++
Sbjct: 134 STFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQ 173

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q852K5|SAP6_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Oryza sativa subsp. japonica GN=SAP6 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 24/148 (16%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVV-KRPLKLMQPNPSILVFDPRSLQ 61
           P LC   CGF+G++  ++MCS CY D ++ +    VV K+PL  +   P  LV +     
Sbjct: 21  PILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPLASLSSTP--LVTEVTDGG 78

Query: 62  SHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFD 121
           S S +  ++       +E  + K  S    RC  C KKVG    KCRCG  +C  HR  D
Sbjct: 79  SGSVADGKQ------VMEEDTPKPPS---NRCLSCRKKVGLTGFKCRCGGTFCSMHRYAD 129

Query: 122 ------------RETLVEDNPLIRADKL 137
                       RE + + NPL++ADK+
Sbjct: 130 SHKCTFDYKQVGREQIAKQNPLVKADKI 157

May be involved in environmental stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q3SZY7|ZFAN6_BOVIN AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 60/198 (30%)

Query: 1   MTPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ------------------------VTD 36
             P LC+ GCGFYG      MCS CY + L+ Q                         TD
Sbjct: 9   QVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVTSLSESLPVQCTD 68

Query: 37  GVVKRPLKLMQPNPSILVFDPRSLQSHSSSSSERTTIDSAAV------------------ 78
           G V      +    S +   P S QS  S S   + +DS +V                  
Sbjct: 69  GSVPEAQSALDSTASSVQPSPVSNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSETA 128

Query: 79  EYSSAKTTSALEK------RCEICDKKVGSIELKCRCGHLYCGTHRKFD----------- 121
           + +S + + +LEK      RC +C KKVG    +CRCG++YCG HR  D           
Sbjct: 129 QQASEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKAD 188

Query: 122 -RETLVEDNPLIRADKLE 138
             E + ++NP++  +K++
Sbjct: 189 AAEKIRKENPVVVGEKIQ 206

Bos taurus (taxid: 9913)

>sp|Q6FIF0|ZFAN6_HUMAN AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 60/196 (30%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ------------------------VTDGV 38
           P LC+ GCGFYG      MCS CY + L+ Q                         TDG 
Sbjct: 11  PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSESLPVQCTDGS 70

Query: 39  VKRPLKLMQPNPSILVFDPRSLQSHSSSSSERTTIDSAAVEYS----------------- 81
           V      +    S +   P S QS  S S   + +DS +V+ +                 
Sbjct: 71  VPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDVQASVSDTAQQ 130

Query: 82  -SAKTTSALEK------RCEICDKKVGSIELKCRCGHLYCGTHRKFD------------R 122
            S + + +LEK      RC +C KKVG    +CRCG++YCG HR  D             
Sbjct: 131 PSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAA 190

Query: 123 ETLVEDNPLIRADKLE 138
           E + ++NP++  +K++
Sbjct: 191 EKIRKENPVVVGEKIQ 206

Homo sapiens (taxid: 9606)

>sp|Q5R7S6|ZFAN6_PONAB AN1-type zinc finger protein 6 OS=Pongo abelii GN=ZFAND6 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 80/196 (40%), Gaps = 60/196 (30%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ------------------------VTDGV 38
           P LC+ GCGFYG      MCS CY + L+ Q                         TDG 
Sbjct: 11  PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSESLPVQCTDGS 70

Query: 39  VKRPLKLMQPNPSILVFDPRSLQSHSSSSSERTTIDSAAVEYS----------------- 81
           V      +    S +   P S QS  S S   + +DS +V+ +                 
Sbjct: 71  VPEAQSTLDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDLQASVSDTAQQ 130

Query: 82  -SAKTTSALEK------RCEICDKKVGSIELKCRCGHLYCGTHRKFD------------R 122
            S + + +LEK      RC +C KKVG    +CRCG++YCG HR  D             
Sbjct: 131 PSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAA 190

Query: 123 ETLVEDNPLIRADKLE 138
           E + ++NP++  +K++
Sbjct: 191 EKIRKENPVVVGEKIQ 206

Pongo abelii (taxid: 9601)

>sp|Q9ZNU9|SAP3_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 16/152 (10%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSLQS 62
           P LC   CGF+G+   +++CS C+ D   ++      K  L               S   
Sbjct: 10  PRLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSLAAVGAAASSSVSPPP 69

Query: 63  HSSSSS----ERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR 118
              + S    E  +   AA E   A       KRC  C ++VG    +CRCG ++CGTHR
Sbjct: 70  PPPADSKEIVEAKSEKRAAAEPEEADGPPQDPKRCLTCRRRVGITGFRCRCGFVFCGTHR 129

Query: 119 -------KFD-----RETLVEDNPLIRADKLE 138
                   FD     ++ + + NP+++ADKLE
Sbjct: 130 YAEQHECSFDFKRMGKDKIAKANPIVKADKLE 161

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EA33|SAP8_ARATH Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 41/147 (27%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSLQS 62
           P LC +GCGF+ T + K++CS CYNDFL+++       R L     N             
Sbjct: 5   PSLCIRGCGFFSTSQTKNLCSKCYNDFLKDESA-----RYLATFNVN------------- 46

Query: 63  HSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDR 122
             + ++E  T   A V  S              C KKVG +   CRCGHL+  +HR  + 
Sbjct: 47  --TKAAEEVTAQEATVLGSKGGCA---------CKKKVGLLGFHCRCGHLFFASHRYPEE 95

Query: 123 ------------ETLVEDNPLIRADKL 137
                       + L + NP+++ DKL
Sbjct: 96  HSCPSDYKSAAIDVLAKQNPVVKGDKL 122

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
224136822	147	predicted protein [Populus trichocarpa]	0.914	0.877	0.405	4e-20
255539675	166	zinc finger protein, putative [Ricinus c	0.851	0.722	0.369	9e-18
225455543	153	PREDICTED: zinc finger A20 and AN1 domai	0.957	0.882	0.363	3e-16
224134549	130	predicted protein [Populus trichocarpa]	0.829	0.9	0.365	3e-16
225455582	152	PREDICTED: zinc finger A20 and AN1 domai	0.985	0.914	0.376	3e-16
222822687	165	stress-associated protein 6 [Solanum pen	0.936	0.8	0.348	8e-16
224120194	147	predicted protein [Populus trichocarpa]	0.907	0.870	0.335	9e-16
222822661	152	stress-associated protein 6 [Solanum lyc	0.929	0.861	0.34	2e-15
357512275	134	Zinc finger A20 and AN1 domain-containin	0.829	0.873	0.329	5e-15
224054049	171	predicted protein [Populus trichocarpa]	0.936	0.771	0.355	1e-14

>gi|224136822|ref|XP_002322424.1| predicted protein [Populus trichocarpa] gi|222869420|gb|EEF06551.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/153 (40%), Positives = 87/153 (56%), Gaps = 24/153 (15%)

Query: 1   MTPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSL 60
           +TP LC KGCGF+G+ E+K++CS CY D+L+E+V   + K   KL     S LV  P S 
Sbjct: 7   LTPALCAKGCGFFGSPENKNLCSKCYKDYLKEEV---IAKTADKL-----SELVITPSSD 58

Query: 61  QSHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR-- 118
             + +  S     ++A+   ++A  T+ L+ RCE C KKVG +  KCRCG  +CG HR  
Sbjct: 59  DKNPAVVSN----ETASTTTATASATTVLKNRCECCGKKVGLMGFKCRCGKTFCGVHRYA 114

Query: 119 ----------KFDRETLVEDNPLIRADKLEGRI 141
                      FDR+ L + NPL+  DKL+ RI
Sbjct: 115 KEHSCTFDFKTFDRQILAKQNPLVAGDKLDARI 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539675|ref|XP_002510902.1| zinc finger protein, putative [Ricinus communis] gi|223550017|gb|EEF51504.1| zinc finger protein, putative [Ricinus communis]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 29/149 (19%)

Query: 1   MTPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSL 60
           +TPP C +GCGF+G+ E+++MCS CY D+L++++       P    +P+P+         
Sbjct: 8   VTPPSCARGCGFFGSAENRNMCSKCYTDYLKQEIIAKTNSAP----EPSPA--------- 54

Query: 61  QSHSSSSSERTTID---SAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTH 117
            S+S S+   T I+   +AA E  +AK+    + RCE C+KKVG     CRCG + CGTH
Sbjct: 55  -SNSLSNKIATCINIKEAAAEEEETAKSVPVAKNRCESCNKKVGVTGFACRCGKVLCGTH 113

Query: 118 R------------KFDRETLVEDNPLIRA 134
           R            + DR+ LV+ NPL++A
Sbjct: 114 RYPKEHCCTFDFKRADRDLLVKQNPLVKA 142

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455543|ref|XP_002267954.1| PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 9-like [Vitis vinifera]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 19/154 (12%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFL--EEQVTDGVVKRPLKLMQPNPSILVFDPRSL 60
           P LC  GCGF+GT   +++CS CY DFL  EE+ T   V    K M P     V    SL
Sbjct: 4   PILCANGCGFFGTTATRNLCSKCYRDFLKEEEESTKTKVMSMKKAMGPR----VESTSSL 59

Query: 61  QSHSSSSSERT-TIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR- 118
              ++S ++ + ++D+     +   +T    ++CE+C KK+G I  KCRCG ++CG HR 
Sbjct: 60  DDVATSMAQLSLSLDNTKKTSNGDPSTKMKSEQCEMCKKKMGIIGFKCRCGSMFCGKHRL 119

Query: 119 ------KFD-----RETLVEDNPLIRADKLEGRI 141
                  FD     RE L + NP ++ +KL GR+
Sbjct: 120 PEKHECNFDYKAMGREILRKQNPSLKPEKLPGRL 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134549|ref|XP_002321850.1| predicted protein [Populus trichocarpa] gi|222868846|gb|EEF05977.1| predicted protein [Populus trichocarpa]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 28/145 (19%)

Query: 5   LCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSLQSHS 64
           LC KGCGF+G+ E+K++CS CY D+L+E+  + +            S LV  P S   + 
Sbjct: 1   LCAKGCGFFGSPENKNLCSKCYKDYLKEETANKL------------SELVITPSSGDKNQ 48

Query: 65  SSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR------ 118
           +  S+    ++A+   ++A T++ L+ RCE C+KKVG +  KCRCG  +CG HR      
Sbjct: 49  AVVSD----ETASTASTTASTSTVLKNRCECCNKKVGLMGFKCRCGKTFCGVHRYAKEHS 104

Query: 119 ------KFDRETLVEDNPLIRADKL 137
                  +DR+ L + NPL+  DKL
Sbjct: 105 CTFDFKTYDRQNLAKQNPLVAGDKL 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455582|ref|XP_002269276.1| PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 7 [Vitis vinifera] gi|296084115|emb|CBI24503.3| unnamed protein product [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 80/154 (51%), Gaps = 15/154 (9%)

Query: 1   MTPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSL 60
           M PPLC  GCGF+GT   +++CS CY DFL+E+      K   K M+      V    S+
Sbjct: 1   MDPPLCVNGCGFFGTPATQNLCSKCYKDFLKEEEE--AAKAKTKSMEKAMGSTVASTSSV 58

Query: 61  QSHSSSSSERT-TIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR- 118
               +S ++ + + ++     S   +T    +RCE C KKVG I  KCRCG ++C  HR 
Sbjct: 59  DDVVTSMTQLSLSSENTKKTISDDSSTKKKVERCETCKKKVGIIGFKCRCGSMFCAEHRL 118

Query: 119 ------KFD-----RETLVEDNPLIRADKLEGRI 141
                  FD     RE L +  PLI+ DKLEGR+
Sbjct: 119 PEKHECSFDYKTMGREILKKQIPLIKPDKLEGRV 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222822687|gb|ACM68456.1| stress-associated protein 6 [Solanum pennellii]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 17/149 (11%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPL-KLMQPNPSILVFDPRSLQ 61
           P LC+ GCGF+GT   K +CS CY DF  ++    + K  + KL+   P I         
Sbjct: 19  PILCSNGCGFFGTAATKGLCSKCYRDFKMKEDHAAMAKVAMEKLVISRPQIESIGKVDFC 78

Query: 62  SHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR--- 118
           S ++S    T  +   VE ++A+   +   RC  C KKVG +  KCRCG  +CGTHR   
Sbjct: 79  SSTTS----TVTERPVVEAATAEIGGSQPNRCFSCRKKVGFVGFKCRCGSTFCGTHRYPE 134

Query: 119 ----KFD-----RETLVEDNPLIRADKLE 138
                FD     +E + + NP+++ADK++
Sbjct: 135 KHDCTFDFKVKGKEEICKANPVVKADKIQ 163

Source: Solanum pennellii

Species: Solanum pennellii

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120194|ref|XP_002318269.1| predicted protein [Populus trichocarpa] gi|222858942|gb|EEE96489.1| predicted protein [Populus trichocarpa]

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 24/152 (15%)

Query: 2   TPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSLQ 61
           T PLC KGCGF+G+ E+++ CS CY ++L+E    G++  P K +         +P  + 
Sbjct: 8   TLPLCAKGCGFFGSPENENFCSKCYKEYLKE----GLIAEPSKKLS--------EPIVVT 55

Query: 62  SHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR--- 118
                +S     D      ++  +TS ++ RCE C+KKVG +  +CRCG+ +CG HR   
Sbjct: 56  PSFDDNSPDVVTDETTSTTTAVASTSKVKNRCECCNKKVGLMGFECRCGNTFCGVHRYPK 115

Query: 119 ---------KFDRETLVEDNPLIRADKLEGRI 141
                      D++ L + NPL+  DKL  RI
Sbjct: 116 EHSCTFDFKTLDQQNLAKQNPLVAGDKLGSRI 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222822661|gb|ACM68443.1| stress-associated protein 6 [Solanum lycopersicum]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 19/150 (12%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPL-KLMQPNPSILVFDPRSL- 60
           P LC+ GCGF+GT     +CS CY DF  ++    + K  + KL+   P I         
Sbjct: 6   PILCSNGCGFFGTAATNGLCSKCYRDFKMKEDHAAMAKVAMEKLVISRPQIESIGKVDFC 65

Query: 61  QSHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR-- 118
            S +S+++ER  +++A  E   ++       RC  C KKVG +  KCRCG  +CGTHR  
Sbjct: 66  SSTTSTAAERPVVEAATAEIGGSQPN-----RCLSCRKKVGFVGFKCRCGSTFCGTHRYP 120

Query: 119 -----KFD-----RETLVEDNPLIRADKLE 138
                 FD     +E + + NP+++ADK++
Sbjct: 121 EKHDCTFDFKIKGKEEICKANPVVKADKIQ 150

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512275|ref|XP_003626426.1| Zinc finger A20 and AN1 domain-containing stress-associated protein [Medicago truncatula] gi|355501441|gb|AES82644.1| Zinc finger A20 and AN1 domain-containing stress-associated protein [Medicago truncatula]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 73/158 (46%), Gaps = 41/158 (25%)

Query: 1   MTPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRSL 60
           M P LC  GCG+YG   +K++CS CYN +L+E +                         L
Sbjct: 1   MVPSLCANGCGYYGLPSNKNLCSKCYNVYLKENIV------------------------L 36

Query: 61  QSHSSSSSERTTIDS-----AAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCG 115
           +S SS  S+  +I+      AA+    +      + RC+ C+KKVG    KCRCG ++CG
Sbjct: 37  ESSSSCPSKNPSINDICDAVAAISLIDSDNMKEKKTRCKSCNKKVGLTGFKCRCGDVFCG 96

Query: 116 THR------------KFDRETLVEDNPLIRADKLEGRI 141
            HR            K  R+ L + NPL   DKL+ RI
Sbjct: 97  MHRYPEEHTCKVDLKKIGRQILEKQNPLCMGDKLKYRI 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054049|ref|XP_002298087.1| predicted protein [Populus trichocarpa] gi|222845345|gb|EEE82892.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 78/163 (47%), Gaps = 31/163 (19%)

Query: 3   PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPL------KLMQPNPSILVFD 56
           P LC  GCGF+GT  + ++CS CY D   E+      K  +      K  Q   S +  D
Sbjct: 16  PQLCANGCGFFGTAANMNLCSKCYRDLRAEEEQAAFAKAAMEKTLNMKSQQHIDSRVAVD 75

Query: 57  P------RSLQSHSSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCG 110
                   S+QS  +SSS  T +  AA +  S+K  +    RC  C+KKVG     C+CG
Sbjct: 76  APQVAVANSMQSAEASSSAETAV--AAGDQVSSKPAN----RCFSCNKKVGLTGFMCKCG 129

Query: 111 HLYCGTHR-------KFD-----RETLVEDNPLIRADKLEGRI 141
             YCGTHR        FD     R  + + NP+I+ADK+ GR 
Sbjct: 130 GTYCGTHRYSENHECSFDFKGAGRNAIAKANPVIKADKV-GRF 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2034650	168	AT1G12440 [Arabidopsis thalian	0.943	0.791	0.344	2.5e-17
UNIPROTKB|E1C732	204	E1C732 "Uncharacterized protei	0.517	0.357	0.328	4.2e-17
TAIR|locus:2132649	176	AT4G22820 [Arabidopsis thalian	0.964	0.772	0.314	6.7e-17
TAIR|locus:504955427	125	AT4G14225 [Arabidopsis thalian	0.219	0.248	0.548	5.2e-16
TAIR|locus:2138053	130	SAP10 "stress-associated prote	0.425	0.461	0.441	6.6e-16
UNIPROTKB|E1BYN2	208	ZFAND6 "Uncharacterized protei	0.283	0.192	0.45	2.8e-15
ZFIN|ZDB-GENE-040426-875	212	zfand5b "zinc finger, AN1-type	0.453	0.301	0.328	3.6e-15
UNIPROTKB|Q3SZY7	208	ZFAND6 "AN1-type zinc finger p	0.354	0.240	0.431	4.3e-15
GENEDB_PFALCIPARUM|PF08_0056	191	PF08_0056 "zinc finger protein	0.468	0.345	0.303	6.9e-15
UNIPROTKB|Q8IB20	191	PF08_0056 "Zinc finger protein	0.468	0.345	0.303	6.9e-15

TAIR|locus:2034650 AT1G12440 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 53/154 (34%), Positives = 74/154 (48%)

Query:     3 PPLCTKGCGFYGTKEHKSMCSNCYNDF--LEEQVTDG--VVKRPLKLMQPNPSILVFDPR 58
             P LC KGCGF+G+  + ++CS CY D    EEQ       V++ L   +P          
Sbjct:    16 PKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEI 75

Query:    59 XXXXXXXXXXERTTI--DSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGT 116
                         +T   DSAA      K+T+    RC  C+KKVG    KCRCG  +CGT
Sbjct:    76 TQGVLGSGSSSSSTRGGDSAAAPLDPPKSTAT---RCLSCNKKVGVTGFKCRCGSTFCGT 132

Query:   117 HR-------KFD-----RETLVEDNPLIRADKLE 138
             HR       +FD     RE + + NP+++ADK++
Sbjct:   133 HRYPESHECQFDFKGVAREAIAKANPVVKADKVD 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C732 E1C732 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
 Identities = 24/73 (32%), Positives = 33/73 (45%)

Query:     3 PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPLKLMQPNPSILVFDPRXXXX 62
             P LCT GCGFYG+     MCS CY +FL+ Q +   +  P +      S+L+ +      
Sbjct:    11 PLLCTTGCGFYGSPRTNGMCSVCYKEFLQRQQSSDRISPPGRGCLSKKSVLIINTADLSL 70

Query:    63 XXXXXXERTTIDS 75
                    R T  S
Sbjct:    71 SGEQLSMRETASS 83

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2132649 AT4G22820 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 49/156 (31%), Positives = 75/156 (48%)

Query:     3 PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRPL-KLMQPNP--SILVFDPRX 59
             P LC KGCGF+G+  +  +CS CY     E+    V K  + K  +P+P  S+ + +P  
Sbjct:    19 PKLCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSLFIAEPPA 78

Query:    60 XXXXXXXXXERTTIDSA-----AVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYC 114
                          + SA     AV  ++  +  A   RC  C+KKVG +  KC+CG  +C
Sbjct:    79 VVVEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTNRCLCCNKKVGIMGFKCKCGSTFC 138

Query:   115 GTHR-------KFD-----RETLVEDNPLIRADKLE 138
             G HR        FD     R  + + NP+++ADK++
Sbjct:   139 GEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKIQ 174

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:504955427 AT4G14225 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query:     3 PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ 33
             P LC +GCGF+ T + K++CS CYNDFL+++
Sbjct:     5 PSLCIRGCGFFSTSQTKNLCSKCYNDFLKDE 35

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2138053 SAP10 "stress-associated protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
 Identities = 34/77 (44%), Positives = 43/77 (55%)

Query:    74 DSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR-------KFD----- 121
             +S AVE    K     ++RC IC +KVG +  KCRCGH++CG+HR        FD     
Sbjct:    57 NSPAVEEEPVK-----KRRCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSG 111

Query:   122 RETLVEDNPLIRADKLE 138
             R  L    PLIRADKL+
Sbjct:   112 RLALATQLPLIRADKLQ 128

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010038 "response to metal ion" evidence=IEP

GO:0010042 "response to manganese ion" evidence=IMP

GO:0010043 "response to zinc ion" evidence=IMP

GO:0010045 "response to nickel cation" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|E1BYN2 ZFAND6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 108 (43.1 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query:     3 PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGVVKRP 42
             P LC+ GCGFYG      MCS CY + L+ Q ++G +  P
Sbjct:    11 PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSNGRISPP 50

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006625 "protein targeting to peroxisome" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043122 "regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0071356 "cellular response to tumor necrosis factor" evidence=IEA

ZFIN|ZDB-GENE-040426-875 zfand5b "zinc finger, AN1-type domain 5b" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
 Identities = 25/76 (32%), Positives = 39/76 (51%)

Query:    75 SAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDRET---------- 124
             +A  E  +A      + RC +C KKVG     CRCG+L+CG HR  D+            
Sbjct:   135 TAEEEAKTAGAPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAA 194

Query:   125 --LVEDNPLIRADKLE 138
               + ++NP++ ADK++
Sbjct:   195 AKIRKENPVVVADKIQ 210

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q3SZY7 ZFAND6 "AN1-type zinc finger protein 6" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query:    72 TIDSAAVEYS-SAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFD 121
             T   A+ E S S +     + RC +C KKVG    +CRCG++YCG HR  D
Sbjct:   127 TAQQASEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSD 177

GO:0071356 "cellular response to tumor necrosis factor" evidence=IEA

GO:0043122 "regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0006625 "protein targeting to peroxisome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GENEDB_PFALCIPARUM|PF08_0056 PF08_0056 "zinc finger protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 106 (42.4 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
 Identities = 24/79 (30%), Positives = 42/79 (53%)

Query:    72 TIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR-------KFD--- 121
             T+D+   + +S++      K C  C K++G + +KCRC H +C  HR        FD   
Sbjct:   112 TLDNTEEKDNSSQPVEDKSK-CFFCSKRIGLVGIKCRCNHYFCSLHRYADAHNCTFDYKN 170

Query:   122 --RETLVEDNPLIRADKLE 138
               ++ L+++N  + ADK+E
Sbjct:   171 YHKQQLIKNNVKVVADKVE 189

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IB20 PF08_0056 "Zinc finger protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 106 (42.4 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
 Identities = 24/79 (30%), Positives = 42/79 (53%)

Query:    72 TIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR-------KFD--- 121
             T+D+   + +S++      K C  C K++G + +KCRC H +C  HR        FD   
Sbjct:   112 TLDNTEEKDNSSQPVEDKSK-CFFCSKRIGLVGIKCRCNHYFCSLHRYADAHNCTFDYKN 170

Query:   122 --RETLVEDNPLIRADKLE 138
               ++ L+++N  + ADK+E
Sbjct:   171 YHKQQLIKNNVKVVADKVE 189

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XV.3016.1 hypothetical protein (136 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam01754	25	pfam01754, zf-A20, A20-like zinc finger	2e-05

>gnl|CDD|201955 pfam01754, zf-A20, A20-like zinc finger

 Score = 39.1 bits (92), Expect = 2e-05
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 3  PPLCTKGCGFYGTKEHKSMCSNCYN 27
          P  CT GCGFYG+   + +CS CY 
Sbjct: 1  PLKCTPGCGFYGSPATEGLCSKCYR 25

The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. Length = 25

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
KOG3173	167	consensus Predicted Zn-finger protein [General fun	100.0
PF01754	25	zf-A20: A20-like zinc finger; InterPro: IPR002653	99.57
smart00259	26	ZnF_A20 A20-like zinc fingers. A20- (an inhibitor	99.51
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	98.54
PF01428	43	zf-AN1: AN1-like Zinc finger; InterPro: IPR000058	97.48
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	87.65
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	85.62
PF15135	278	UPF0515: Uncharacterised protein UPF0515	82.6
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	82.12
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	81.89

>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]

Probab=100.00  E-value=5.7e-38  Score=246.00  Aligned_cols=138  Identities=36%  Similarity=0.728  Sum_probs=89.9

Q ss_pred             ccccccCCCCCCcccCCCCchhhhhHHHhhhhcc-ccccCccccCCCCCCcc-ccCCC-CcccCCCCCCccccccccccc
Q 037934            3 PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTD-GVVKRPLKLMQPNPSIL-VFDPR-SLQSHSSSSSERTTIDSAAVE   79 (141)
Q Consensus         3 p~lC~ngCGFfGs~at~n~CSkCyr~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-s~~~~~~~~~~~~~~~~~~~~   79 (141)
                      +.||+|||||||+|+|+||||+||+|++.++++. ...+.........+..+ ..+.. ...+................+
T Consensus        15 ~~lc~~gCGf~G~p~~~n~CSkC~~e~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   94 (167)
T KOG3173|consen   15 DLLCVNGCGFYGSPATENLCSKCYRDHLLRQQQKQARASPPVESSLSSPRSVPSRDPPAVSLESTTESELKLVSDTPSTE   94 (167)
T ss_pred             ccccccCccccCChhhccHHHHHHHHHHHHhhhccccccCcccccccCccccCccccccccccccccccccccccCCccc
Confidence            5899999999999999999999999999888665 33222211100000000 00000 000000000000000000111


Q ss_pred             ccccccCccccCccccccccccccceeeecCCcccchhh------------HhhHHHHHHhCCceeccccccCC
Q 037934           80 YSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR------------KFDRETLVEDNPLIRADKLEGRI  141 (141)
Q Consensus        80 ~~~~~~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR------------~~~r~~lak~NP~v~~~Ki~~KI  141 (141)
                      +.+.......++||+.|+|||||+||.||||++||+.||            .+||+.|+++||+|+++||+ ||
T Consensus        95 ~~~~~~~~~~~~rC~~C~kk~gltgf~CrCG~~fC~~HRy~e~H~C~fDyK~~gr~~i~k~nP~v~a~k~~-ki  167 (167)
T KOG3173|consen   95 EEDEESKPKKKKRCFKCRKKVGLTGFKCRCGNTFCGTHRYPEQHDCSFDYKQAGREKIAKANPVVKADKLQ-KI  167 (167)
T ss_pred             ccccccccccchhhhhhhhhhcccccccccCCcccccccCCccccccccHHHHHHHHHHHhCCeeeccccc-cC
Confidence            122233445688999999999999999999999999999            89999999999999999999 98

>PF01754 zf-A20: A20-like zinc finger; InterPro: IPR002653 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.57  E-value=9.5e-16  Score=86.94  Aligned_cols=25  Identities=52%  Similarity=1.460  Sum_probs=21.0

Q ss_pred             ccccccCCCCCCcccCCCCchhhhh
Q 037934            3 PPLCTKGCGFYGTKEHKSMCSNCYN   27 (141)
Q Consensus         3 p~lC~ngCGFfGs~at~n~CSkCyr   27 (141)
                      |++|++|||||||++|+||||+||+
T Consensus         1 ~~~C~~gCgf~Gs~~~~~~Cs~C~~   25 (25)
T PF01754_consen    1 PSLCANGCGFYGSPATNGLCSKCYR   25 (25)
T ss_dssp             SSB-TTTSSSB-BGGGTTS-HHHHH
T ss_pred             CCcccCCCCCcccccccCcchhhcC
Confidence            6899999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in A20. A20 is an inhibitor of cell death that inhibits NF-kappaB activation via the tumour necrosis factor receptor associated factor pathway []. The zinc finger domains appear to mediate self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 2FIF_F 2FID_B 2C7N_C 2C7M_A 2L00_A 2KZY_A 2EQG_A 2EQE_A 3OJ3_J 3OJ4_C ....

>smart00259 ZnF_A20 A20-like zinc fingers

Probab=99.51  E-value=4.2e-15  Score=84.96  Aligned_cols=25  Identities=40%  Similarity=1.237  Sum_probs=23.6

Q ss_pred             ccccc-cCCCCCCcccCCCCchhhhh
Q 037934            3 PPLCT-KGCGFYGTKEHKSMCSNCYN   27 (141)
Q Consensus         3 p~lC~-ngCGFfGs~at~n~CSkCyr   27 (141)
                      |++|+ +|||||||++|+|||||||+
T Consensus         1 ~~~C~~~~CgF~G~~~t~~~CskCy~   26 (26)
T smart00259        1 PIKCRRPGCGFFGNPATEGLCSKCFK   26 (26)
T ss_pred             CCccccCCCCCcCChhhcccCHhhcC
Confidence            57899 99999999999999999996

A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=98.54  E-value=2.7e-08  Score=61.34  Aligned_cols=26  Identities=62%  Similarity=1.478  Sum_probs=25.3

Q ss_pred             cccccccccccceeee-cCCcccchhh
Q 037934           93 CEICDKKVGSIELKCR-CGHLYCGTHR  118 (141)
Q Consensus        93 C~~C~kkvgl~gf~CR-Cg~~fC~~HR  118 (141)
                      |+.|+++++|++|+|+ |+.+||+.||
T Consensus         1 C~~C~~~~~l~~f~C~~C~~~FC~~HR   27 (39)
T smart00154        1 CHFCRKKVGLTGFKCRHCGNLFCGEHR   27 (39)
T ss_pred             CcccCCcccccCeECCccCCccccccC
Confidence            7889999999999999 9999999999

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.48  E-value=4.2e-05  Score=47.54  Aligned_cols=25  Identities=44%  Similarity=1.123  Sum_probs=17.3

Q ss_pred             ccc--ccccccccceeee-cCCcccchhh
Q 037934           93 CEI--CDKKVGSIELKCR-CGHLYCGTHR  118 (141)
Q Consensus        93 C~~--C~kkvgl~gf~CR-Cg~~fC~~HR  118 (141)
                      |..  |++++. ++|.|+ |+..||..||
T Consensus         1 C~~~~C~~~~~-~~~~C~~C~~~FC~~Hr   28 (43)
T PF01428_consen    1 CSFPGCKKKDF-LPFKCKHCGKSFCLKHR   28 (43)
T ss_dssp             -SSTTT--BCT-SHEE-TTTS-EE-TTTH
T ss_pred             CccCcCcCccC-CCeECCCCCcccCcccc
Confidence            455  999998 799999 9999999999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=87.65  E-value=0.27  Score=27.78  Aligned_cols=23  Identities=30%  Similarity=0.668  Sum_probs=20.7

Q ss_pred             Cccccccccccccceeee-cCCcc
Q 037934           91 KRCEICDKKVGSIELKCR-CGHLY  113 (141)
Q Consensus        91 ~rC~~C~kkvgl~gf~CR-Cg~~f  113 (141)
                      .+|-.|++.|.+.--.|- ||+.|
T Consensus         1 K~CP~C~~~V~~~~~~Cp~CG~~F   24 (26)
T PF10571_consen    1 KTCPECGAEVPESAKFCPHCGYDF   24 (26)
T ss_pred             CcCCCCcCCchhhcCcCCCCCCCC
Confidence            368999999999999998 99988

Several members are annotated as putative helicases.

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.62  E-value=0.45  Score=31.20  Aligned_cols=30  Identities=33%  Similarity=0.834  Sum_probs=17.7

Q ss_pred             ccCcccccccccccc--ceeee-cCCcccchhh
Q 037934           89 LEKRCEICDKKVGSI--ELKCR-CGHLYCGTHR  118 (141)
Q Consensus        89 ~~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR  118 (141)
                      ....|..|+++.+|+  -..|| ||.+||+.+-
T Consensus         8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs   40 (69)
T PF01363_consen    8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCS   40 (69)
T ss_dssp             G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS
T ss_pred             CCCcCcCcCCcCCCceeeEccCCCCCEECCchh
Confidence            457999999999995  67786 8999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>PF15135 UPF0515: Uncharacterised protein UPF0515

Probab=82.60  E-value=0.69  Score=39.40  Aligned_cols=30  Identities=33%  Similarity=0.767  Sum_probs=24.9

Q ss_pred             ccccCcccccccc---------ccccceee-ecCCcccch
Q 037934           87 SALEKRCEICDKK---------VGSIELKC-RCGHLYCGT  116 (141)
Q Consensus        87 ~~~~~rC~~C~kk---------vgl~gf~C-RCg~~fC~~  116 (141)
                      .+..+||..|+||         .||--|.| .|++.|=|.
T Consensus       129 rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G~  168 (278)
T PF15135_consen  129 RKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRGF  168 (278)
T ss_pred             ccccccccccccccCCCccccccceeeeecccccccchhh
Confidence            3456899999887         89999999 999999554

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=82.12  E-value=0.76  Score=28.86  Aligned_cols=28  Identities=29%  Similarity=0.807  Sum_probs=23.0

Q ss_pred             Ccccccccccccc--ceeee-cCCcccchhh
Q 037934           91 KRCEICDKKVGSI--ELKCR-CGHLYCGTHR  118 (141)
Q Consensus        91 ~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR  118 (141)
                      ..|..|.++.++.  ...|| ||.+||+.+-
T Consensus         3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~   33 (57)
T cd00065           3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCS   33 (57)
T ss_pred             CcCcccCccccCCccccccCcCcCCcChHHc
Confidence            5799999999994  66774 8999998765

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=81.89  E-value=0.92  Score=29.63  Aligned_cols=29  Identities=28%  Similarity=0.801  Sum_probs=24.0

Q ss_pred             cCcccccccccccc--ceeee-cCCcccchhh
Q 037934           90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR  118 (141)
Q Consensus        90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR  118 (141)
                      ...|..|.++.++.  ...|| ||.+||+.+-
T Consensus        10 ~~~C~~C~~~F~~~~rk~hCr~CG~i~C~~C~   41 (68)
T smart00064       10 VSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCS   41 (68)
T ss_pred             CCcCcccCccccCcccccccccCCCCcChHHc
Confidence            46899999999985  66675 8999998775

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
1wfp_A	74	Solution Structure Of The Zf-an1 Domain From Arabio		2e-04
2kzy_A	62	Solution Nmr Structure Of The Znf216 A20 Zinc Finge		2e-04
1wfl_A	74	Solution Structure Of The Zf-An1 Domain From Mouse		2e-04

>pdb|1WFP|A Chain A, Solution Structure Of The Zf-an1 Domain From Arabiopsis Thaliana F5o11.17 Protein Length = 74

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 76  AAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR 118
           AA      K+T+    RC  C+KKVG    KCRCG  +CGTHR
Sbjct: 14  AAAPLDPPKSTAT---RCLSCNKKVGVTGFKCRCGSTFCGTHR 53

>pdb|2KZY|A Chain A, Solution Nmr Structure Of The Znf216 A20 Zinc Finger Length = 62

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 3  PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDG 37
          P LC+ GCGFYG      MCS CY + L+ Q   G
Sbjct: 13 PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSG 47

>pdb|1WFL|A Chain A, Solution Structure Of The Zf-An1 Domain From Mouse Zinc Finger Protein 216 Length = 74

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 90  EKRCEICDKKVGSIELKCRCGHLYCGTHRKFDRETLVED 128
           + RC +C KKVG     CRCG+L+CG HR  D+     D
Sbjct: 25  KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYD 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	1e-09
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	3e-09
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	3e-08
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	8e-08
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	1e-07
2kzy_A	62	ZNF216-A20, zfand5 protein (zinc finger protein 21	2e-07
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	6e-06
2c7n_A	74	Rabex-5, GEF 1, RAB guanine nucleotide exchange fa	3e-05

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Length = 85

 Score = 50.7 bits (121), Expect = 1e-09
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 13/81 (16%)

Query: 67  SSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVG-SIELKCRCGHLYCGTHR------- 118
           SS  + I       +  +T   + K C +C KK G +   +CRCG+ +C +HR       
Sbjct: 2   SSGSSGIHHLPPVKAPLQTKKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGC 61

Query: 119 KFD-----RETLVEDNPLIRA 134
            +D     R  L E NP+   
Sbjct: 62  NYDYKSAGRRYLEEANPVSGP 82

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Length = 74

 Score = 49.2 bits (117), Expect = 3e-09
 Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 64  SSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDR 122
           SS SS     DSAA      K+T+    RC  C+KKVG    KCRCG  +CGTHR  + 
Sbjct: 2   SSGSSGTRGGDSAAAPLDPPKSTA---TRCLSCNKKVGVTGFKCRCGSTFCGTHRYPES 57

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Length = 74

 Score = 46.9 bits (111), Expect = 3e-08
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 64  SSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDR 122
           SS SS  ++  S        K       RC +C KKVG     CRCG+L+CG HR  D+
Sbjct: 2   SSGSSGPSSSQSEEKAPELPKPKK---NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDK 57

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Length = 64

 Score = 45.6 bits (108), Expect = 8e-08
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 91  KRCEICDKKVGSIELKCRCGHLYCGTHRKFDR 122
            RC +C K+VG     CRCG  +CG+HR  + 
Sbjct: 16  NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEV 47

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Length = 64

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 91  KRCEICDKKVGSIELKCRCGHLYCGTHRKFDR 122
            RC  C+KKVG +  KC+CG  +CG+HR  ++
Sbjct: 16  NRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEK 47

>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A Length = 62

 Score = 44.3 bits (104), Expect = 2e-07
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 2  TPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ 33
           P LC+ GCGFYG      MCS CY + L+ Q
Sbjct: 12 GPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ 43

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 67

 Score = 40.8 bits (95), Expect = 6e-06
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 76  AAVEYSSAKTTSALEKRCEICDKKVGSIE---LKCRCGHLYCGTHR 118
            +   S +++     +RC  C  K+  ++     CRCG+++C  HR
Sbjct: 1   GSSGSSGSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHR 46

>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B Length = 74

 Score = 39.1 bits (90), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 3  PPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ 33
            LC KGCG+YG    +  CS C+ +   + 
Sbjct: 16 DLLCKKGCGYYGNPAWQGFCSKCWREEYHKA 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	99.8
2kzy_A	62	ZNF216-A20, zfand5 protein (zinc finger protein 21	99.69
2c7n_A	74	Rabex-5, GEF 1, RAB guanine nucleotide exchange fa	99.63
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	99.61
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	99.59
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	99.59
3oj3_I	49	Tumor necrosis factor alpha-induced protein 3; ubi	99.59
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	99.53
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	99.5
1x4v_A	63	Hypothetical protein LOC130617; ZF-AN1 domain, zin	98.53
1wfe_A	86	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	98.53
1wys_A	75	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	98.03
2eqe_A	48	Tumor necrosis factor, alpha-induced protein 3; ZF	97.92
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	83.98
2eqf_A	46	Tumor necrosis factor, alpha-induced protein 3; ZF	82.16
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	81.25
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	80.8

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=99.80  E-value=3.5e-21  Score=136.12  Aligned_cols=51  Identities=37%  Similarity=0.797  Sum_probs=47.4

Q ss_pred             cCccccCcccccccccccc-ceeeecCCcccchhh------------HhhHHHHHHhCCceecc
Q 037934           85 TTSALEKRCEICDKKVGSI-ELKCRCGHLYCGTHR------------KFDRETLVEDNPLIRAD  135 (141)
Q Consensus        85 ~~~~~~~rC~~C~kkvgl~-gf~CRCg~~fC~~HR------------~~~r~~lak~NP~v~~~  135 (141)
                      .+++.++||+.|+|||||+ +|+||||++||+.||            ++||++|+|+||+|++|
T Consensus        20 ~~k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK~~gr~~iak~NPvV~a~   83 (85)
T 1wff_A           20 TKKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS   83 (85)
T ss_dssp             CCCCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred             cCcccCccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhhHHHHHHHHHHCCeecCC
Confidence            3456789999999999995 999999999999999            99999999999999986

>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A

Probab=99.69  E-value=1.2e-17  Score=111.77  Aligned_cols=37  Identities=46%  Similarity=1.079  Sum_probs=32.4

Q ss_pred             CccccccCCCCCCcccCCCCchhhhhHHHhhhhcccc
Q 037934            2 TPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTDGV   38 (141)
Q Consensus         2 ~p~lC~ngCGFfGs~at~n~CSkCyr~~~~~~~~~~~   38 (141)
                      .|+||+|||||||||+|+|||||||||.+.+++++..
T Consensus        12 ~~~lC~ngCGFfGnpaT~nlCSkCyr~~~~~~~~~~~   48 (62)
T 2kzy_A           12 GPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGR   48 (62)
T ss_dssp             CCCBCTTCCSSBCCTTTTSCCHHHHHHHHHHHHHHCC
T ss_pred             cccchhhCCCCcCChhhcCcCHHHHHHHHHhhhcccc
Confidence            4789999999999999999999999999877665433

>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B

Probab=99.63  E-value=8.8e-17  Score=110.72  Aligned_cols=32  Identities=34%  Similarity=0.986  Sum_probs=26.8

Q ss_pred             CccccccCCCCCCcccCCCCchhhhhHHHhhh
Q 037934            2 TPPLCTKGCGFYGTKEHKSMCSNCYNDFLEEQ   33 (141)
Q Consensus         2 ~p~lC~ngCGFfGs~at~n~CSkCyr~~~~~~   33 (141)
                      .|.||+|||||||||+|+|||||||++...++
T Consensus        15 ~~~lC~ngCGFfGnpaT~nlCSkCyrd~~~k~   46 (74)
T 2c7n_A           15 SDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA   46 (74)
T ss_dssp             ---CCTTCSSSCCCGGGTTCCHHHHHHHHHHH
T ss_pred             cchhHHhCCCCCCChhhcCccHHHHHHHHHHH
Confidence            46799999999999999999999999986443

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=99.61  E-value=2.3e-17  Score=111.10  Aligned_cols=42  Identities=33%  Similarity=0.835  Sum_probs=37.5

Q ss_pred             cCccccCccccccccccccceeeecCCcccchhh------------HhhHHHHH
Q 037934           85 TTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR------------KFDRETLV  126 (141)
Q Consensus        85 ~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR------------~~~r~~la  126 (141)
                      +++..++||+.|+|||||++|+||||++||+.||            ++||++||
T Consensus        10 ~~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~l~   63 (64)
T 1wfh_A           10 SPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPSS   63 (64)
T ss_dssp             CCCSSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCCCCSCCC
T ss_pred             CCCCcCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhHHHHHHhc
Confidence            4456789999999999999999999999999999            78887764

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=99.59  E-value=2.2e-16  Score=108.95  Aligned_cols=35  Identities=46%  Similarity=1.083  Sum_probs=31.8

Q ss_pred             ccCccccCccccccccccccceeeecCCcccchhh
Q 037934           84 KTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR  118 (141)
Q Consensus        84 ~~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR  118 (141)
                      .+.+..+|||+.|+|||||++|.||||++||+.||
T Consensus        19 ~~~k~~~nRC~~CrKkvgL~gf~CrCg~~FCs~HR   53 (74)
T 1wfl_A           19 ELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHR   53 (74)
T ss_dssp             CCCCSCTTBCSSSCCBCGGGCEECTTSCEECSSSC
T ss_pred             ccCCCcCCcChhhCCcccccCeecCCCCEechhcC
Confidence            34455689999999999999999999999999999

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=99.59  E-value=6.6e-17  Score=108.91  Aligned_cols=42  Identities=36%  Similarity=0.864  Sum_probs=36.7

Q ss_pred             ccCccccCccccccccccccceeeecCCcccchhh------------HhhHHHH
Q 037934           84 KTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR------------KFDRETL  125 (141)
Q Consensus        84 ~~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR------------~~~r~~l  125 (141)
                      .+++..++||+.|+|||||++|+||||++||+.||            ++||++|
T Consensus         9 ~~~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~gr~~~   62 (64)
T 1wg2_A            9 SRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSGPS   62 (64)
T ss_dssp             SCCSCCSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCSCCCSC
T ss_pred             CCCCCcCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHHhHHHh
Confidence            34555789999999999999999999999999999            7777665

>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C

Probab=99.59  E-value=3.4e-16  Score=100.09  Aligned_cols=28  Identities=36%  Similarity=1.019  Sum_probs=26.5

Q ss_pred             cccc-cCCCCCCcccCCCCchhhhhHHHh
Q 037934            4 PLCT-KGCGFYGTKEHKSMCSNCYNDFLE   31 (141)
Q Consensus         4 ~lC~-ngCGFfGs~at~n~CSkCyr~~~~   31 (141)
                      .||+ |||||||||+|+|||||||||++.
T Consensus        19 ~lC~~ngCGFfG~p~t~n~CSkCyre~~e   47 (49)
T 3oj3_I           19 SKCRKAGCVYFGTPENKGFCTLCFIEYRE   47 (49)
T ss_dssp             CBCSSTTCSSBCBGGGTTBCHHHHHHHHH
T ss_pred             cccccCCCCCccCcccCCcchHHHHHHHH
Confidence            6999 999999999999999999999875

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=99.53  E-value=7.4e-16  Score=106.36  Aligned_cols=35  Identities=49%  Similarity=1.088  Sum_probs=32.2

Q ss_pred             ccCccccCccccccccccccceeeecCCcccchhh
Q 037934           84 KTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR  118 (141)
Q Consensus        84 ~~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR  118 (141)
                      .+++..++||+.|+|+|||++|+||||++||+.||
T Consensus        19 ~~~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HR   53 (74)
T 1wfp_A           19 DPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHR   53 (74)
T ss_dssp             CCTTCCCCBCSSSCCBCTTTCEECTTSCEECTTTC
T ss_pred             ccCcccCccchhhcCcccccceEeccCCEeccccC
Confidence            34566789999999999999999999999999999

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=9.8e-16  Score=104.01  Aligned_cols=35  Identities=31%  Similarity=0.828  Sum_probs=31.4

Q ss_pred             ccCccccCccccccccccccc---eeeecCCcccchhh
Q 037934           84 KTTSALEKRCEICDKKVGSIE---LKCRCGHLYCGTHR  118 (141)
Q Consensus        84 ~~~~~~~~rC~~C~kkvgl~g---f~CRCg~~fC~~HR  118 (141)
                      .++++.++||+.|+|||||++   |+||||++||+.||
T Consensus         9 ~~~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HR   46 (67)
T 1x4w_A            9 RSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHR   46 (67)
T ss_dssp             CCSCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTC
T ss_pred             ccCCccCCcchhhCCeecccccCceEecCCCEehhccC
Confidence            345667899999999999994   99999999999999

>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=3.1e-08  Score=66.20  Aligned_cols=32  Identities=28%  Similarity=0.859  Sum_probs=29.3

Q ss_pred             CccccCcccc--ccccccccceeee-cCCcccchhh
Q 037934           86 TSALEKRCEI--CDKKVGSIELKCR-CGHLYCGTHR  118 (141)
Q Consensus        86 ~~~~~~rC~~--C~kkvgl~gf~CR-Cg~~fC~~HR  118 (141)
                      .+...+||..  |+++ +|++|.|+ |+.+||..||
T Consensus         8 ~k~~~~~Cs~~~Ck~~-~ll~f~C~~C~~~FC~~HR   42 (63)
T 1x4v_A            8 RKIFTNKCERAGCRQR-EMMKLTCERCSRNFCIKHR   42 (63)
T ss_dssp             CCTTCCCCCSTTCCCC-CSSCCBCSSSCCBCCHHHH
T ss_pred             CcccCCCCCccCCCCC-CccceECCCCCcccCcccC
Confidence            4456899999  9999 99999999 9999999999

>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=98.53  E-value=6e-09  Score=73.34  Aligned_cols=54  Identities=13%  Similarity=0.345  Sum_probs=40.7

Q ss_pred             CccccCcccc--ccccccccceeee-cCCcccchhh-----HhhHHHHHHhCCceeccccccCC
Q 037934           86 TSALEKRCEI--CDKKVGSIELKCR-CGHLYCGTHR-----KFDRETLVEDNPLIRADKLEGRI  141 (141)
Q Consensus        86 ~~~~~~rC~~--C~kkvgl~gf~CR-Cg~~fC~~HR-----~~~r~~lak~NP~v~~~Ki~~KI  141 (141)
                      .+..++||+.  |+++ +|++|.|+ |+.+||..||     .=....+.+.++...+.++. +|
T Consensus        21 ~~~~~~~C~~~~Ck~~-~~l~f~C~~C~~~FC~~HR~~e~H~C~~~~~~k~~~~~~~~l~~-~~   82 (86)
T 1wfe_A           21 DEHKSYSCSFKGCTDV-ELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVR-SG   82 (86)
T ss_dssp             SCSCCEECCSTTCCCE-ESSCEECTTTCCEECGGGCSTGGGTCSSSSCCCSSCCCCCCCSS-CS
T ss_pred             cCCCCCCCCCcCCCCC-CccceECCCCCcccccccCCccCCCCCCCcccccchHHHHHHHH-HH
Confidence            4456799998  9999 88999999 9999999999     11112346677777776666 54

>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=98.03  E-value=1.3e-06  Score=60.06  Aligned_cols=29  Identities=24%  Similarity=0.953  Sum_probs=27.1

Q ss_pred             ccCcccc--ccccccccceeee-cCCcccchhh
Q 037934           89 LEKRCEI--CDKKVGSIELKCR-CGHLYCGTHR  118 (141)
Q Consensus        89 ~~~rC~~--C~kkvgl~gf~CR-Cg~~fC~~HR  118 (141)
                      ..+||..  |+++ +|+.|+|+ |+.+||..||
T Consensus        13 ~g~~Cs~~~C~~~-dflpf~C~~C~~~FC~~HR   44 (75)
T 1wys_A           13 IGQHCQVQHCRQR-DFLPFVCDGCSGIFCLEHR   44 (75)
T ss_dssp             CCCCCSCTTTCCC-SCCCEECTTTCCEECSTTC
T ss_pred             cCCCcCcccCCCc-cceeeECcccCcCcCcccC
Confidence            3589998  9998 89999999 9999999999

>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}

Probab=97.92  E-value=6e-06  Score=52.15  Aligned_cols=29  Identities=31%  Similarity=0.936  Sum_probs=25.9

Q ss_pred             ccccc-cCCCCCCcccCCCCchhhhhHHHh
Q 037934            3 PPLCT-KGCGFYGTKEHKSMCSNCYNDFLE   31 (141)
Q Consensus         3 p~lC~-ngCGFfGs~at~n~CSkCyr~~~~   31 (141)
                      ...|. .||-|||+|.+.++|..||.++..
T Consensus        15 t~kCRk~GC~fFGTpen~GFCTlCf~eyre   44 (48)
T 2eqe_A           15 TSKCRKAGCVYFGTPENKGFCTLCFIEYSG   44 (48)
T ss_dssp             SSBCSSTTCCSBCCTTTTTCCHHHHHHHHS
T ss_pred             cchhhhcCCCcccCcccCceeeeehhhhhc
Confidence            35796 899999999999999999999854

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=83.98  E-value=0.5  Score=30.99  Aligned_cols=28  Identities=39%  Similarity=1.057  Sum_probs=23.6

Q ss_pred             Ccccccccccccc--ceeee-cCCcccchhh
Q 037934           91 KRCEICDKKVGSI--ELKCR-CGHLYCGTHR  118 (141)
Q Consensus        91 ~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR  118 (141)
                      ..|..|+++.+|+  --.|| ||.+||+.+-
T Consensus        12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs   42 (73)
T 1vfy_A           12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHS   42 (73)
T ss_dssp             SBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred             CcccCCCCccCCccccccCCCCCEEEccccc
Confidence            4899999999985  56776 9999999874

>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}

Probab=82.16  E-value=0.63  Score=28.76  Aligned_cols=24  Identities=17%  Similarity=0.629  Sum_probs=21.6

Q ss_pred             cccCCCCCCcccCCCCchhhhhHH
Q 037934            6 CTKGCGFYGTKEHKSMCSNCYNDF   29 (141)
Q Consensus         6 C~ngCGFfGs~at~n~CSkCyr~~   29 (141)
                      ++-+|.-|||..-+++|.-||.-.
T Consensus        13 ~apgCdhygN~kc~GyCNeC~~fK   36 (46)
T 2eqf_A           13 RAPACDHFGNAKCNGYCNECFQFK   36 (46)
T ss_dssp             SSTTCCSCCBGGGTBSCHHHHHHH
T ss_pred             cCcccccccchhhhhhhHHHHhhH
Confidence            478999999999999999999754

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=81.25  E-value=0.88  Score=30.42  Aligned_cols=29  Identities=34%  Similarity=1.001  Sum_probs=23.9

Q ss_pred             cCcccccccccccc--ceeee-cCCcccchhh
Q 037934           90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR  118 (141)
Q Consensus        90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR  118 (141)
                      ...|..|.++.+|+  --.|| ||.+||+.+-
T Consensus        19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs   50 (82)
T 2yw8_A           19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCS   50 (82)
T ss_dssp             CCBCTTTCCBCBTTBCCEECTTTCCEECSGGG
T ss_pred             CCcccCcCCcccCccccccCCCCCCEEChHHh
Confidence            45899999999985  46776 8999999864

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=80.80  E-value=0.84  Score=33.00  Aligned_cols=29  Identities=28%  Similarity=0.851  Sum_probs=24.0

Q ss_pred             cCcccccccccccc--ceeee-cCCcccchhh
Q 037934           90 EKRCEICDKKVGSI--ELKCR-CGHLYCGTHR  118 (141)
Q Consensus        90 ~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR  118 (141)
                      ...|..|.++.+++  -..|| ||.+||+.+-
T Consensus        69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs  100 (125)
T 1joc_A           69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECS  100 (125)
T ss_dssp             CCBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred             CCCCcCcCCccccccccccCCCCCeEEChHHh
Confidence            46899999999985  46786 8999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	141
d1wfla_	74	g.80.1.1 (A:) Zinc finger A20 domain containing pr	3e-09
d1wffa_	85	g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog	6e-09
d1wfpa_	74	g.80.1.1 (A:) Zinc finger A20 and AN1 domains cont	1e-08
d1wfha_	64	g.80.1.1 (A:) Zinc finger A20 and AN1 domains cont	3e-08
d2c7na1	56	g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-b	4e-07

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (115), Expect = 3e-09
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 67  SSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDR 122
           SS  +   S+  E  + +     + RC +C KKVG     CRCG+L+CG HR  D+
Sbjct: 2   SSGSSGPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDK 57

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (114), Expect = 6e-09
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 67  SSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIE-LKCRCGHLYCGTHR------- 118
           SS  + I       +  +T   + K C +C KK G     +CRCG+ +C +HR       
Sbjct: 2   SSGSSGIHHLPPVKAPLQTKKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGC 61

Query: 119 KFD-----RETLVEDNPLIRA 134
            +D     R  L E NP+   
Sbjct: 62  NYDYKSAGRRYLEEANPVSGP 82

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 74

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.8 bits (111), Expect = 1e-08
 Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 64  SSSSSERTTIDSAAVEYSSAKTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHRKFDR 122
           SS SS     DSAA      K+T+    RC  C+KKVG    KCRCG  +CGTHR  + 
Sbjct: 2   SSGSSGTRGGDSAAAPLDPPKSTA---TRCLSCNKKVGVTGFKCRCGSTFCGTHRYPES 57

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.6 bits (108), Expect = 3e-08
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 91  KRCEICDKKVGSIELKCRCGHLYCGTHRKFDR 122
            RC +C K+VG     CRCG  +CG+HR  + 
Sbjct: 16  NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEV 47

>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: A20-like zinc finger
domain: RabGEF1 (Rabex-5), ubiquitin-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 4e-07
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 5  LCTKGCGFYGTKEHKSMCSNCYNDFLEEQ 33
          LC KGCG+YG    +  CS C+ +   + 
Sbjct: 1  LCKKGCGYYGNPAWQGFCSKCWREEYHKA 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	99.74
d2c7na1	56	RabGEF1 (Rabex-5), ubiquitin-binding domain {Human	99.68
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	99.55
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	99.54
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	99.47
d1wfea_	86	AN1-type zinc finger protein 1 {Mouse (Mus musculu	95.13
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	89.51
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	89.23
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	83.67

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=7.3e-20  Score=127.69  Aligned_cols=52  Identities=37%  Similarity=0.792  Sum_probs=46.9

Q ss_pred             ccCccccCccccccccccc-cceeeecCCcccchhh------------HhhHHHHHHhCCceecc
Q 037934           84 KTTSALEKRCEICDKKVGS-IELKCRCGHLYCGTHR------------KFDRETLVEDNPLIRAD  135 (141)
Q Consensus        84 ~~~~~~~~rC~~C~kkvgl-~gf~CRCg~~fC~~HR------------~~~r~~lak~NP~v~~~  135 (141)
                      ...+..++||+.|+||||| ++|+||||++||+.||            ++||++|+++||+|.+.
T Consensus        19 ~~kk~~~~RC~~C~KKl~l~~~~~CrCg~~FC~~HR~pe~H~CtfDyK~~~k~~L~k~NP~i~p~   83 (85)
T d1wffa_          19 QTKKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS   83 (85)
T ss_dssp             CCCCCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred             ccccccCCcChhcCCeecCCcCeecCCCCEehhhcCCCcCcCCCcchHHHHHHHHHHHCCccCCC
Confidence            4455567899999999999 5999999999999999            89999999999999874

>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: A20-like zinc finger
domain: RabGEF1 (Rabex-5), ubiquitin-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.3e-18  Score=110.21  Aligned_cols=32  Identities=34%  Similarity=0.986  Sum_probs=29.5

Q ss_pred             ccccCCCCCCcccCCCCchhhhhHHHhhhhcc
Q 037934            5 LCTKGCGFYGTKEHKSMCSNCYNDFLEEQVTD   36 (141)
Q Consensus         5 lC~ngCGFfGs~at~n~CSkCyr~~~~~~~~~   36 (141)
                      ||+|||||||||+|+|||||||||+..++++.
T Consensus         1 lC~~gCGFyG~~~~~g~CSkCyr~~~~k~~q~   32 (56)
T d2c7na1           1 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQK   32 (56)
T ss_dssp             CCTTCSSSCCCGGGTTCCHHHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCcccCCcchHHHHHHHHHHHHH
Confidence            79999999999999999999999998777654

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=1.4e-16  Score=105.63  Aligned_cols=34  Identities=41%  Similarity=1.091  Sum_probs=31.8

Q ss_pred             cCccccCccccccccccccceeeecCCcccchhh
Q 037934           85 TTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR  118 (141)
Q Consensus        85 ~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR  118 (141)
                      +++++++||..|+|||||++|+||||++||+.||
T Consensus        10 ~~~~k~~RC~~C~KKl~l~~~~CrCg~~FC~~HR   43 (64)
T d1wfha_          10 SPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHR   43 (64)
T ss_dssp             CCCSSCCCCTTTCCCCCTTCEECSSSCEECTTTC
T ss_pred             CCCCCCCcChhhCCCccceeeeccCCCEehhhcC
Confidence            4456789999999999999999999999999999

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=9.8e-16  Score=104.12  Aligned_cols=35  Identities=46%  Similarity=1.083  Sum_probs=31.7

Q ss_pred             ccCccccCccccccccccccceeeecCCcccchhh
Q 037934           84 KTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR  118 (141)
Q Consensus        84 ~~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR  118 (141)
                      ..++.+++||..|+|||||++|+||||++||+.||
T Consensus        19 ~~~k~k~~RC~~C~KKl~l~~~~CrCg~~FC~~HR   53 (74)
T d1wfla_          19 ELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHR   53 (74)
T ss_dssp             CCCCSCTTBCSSSCCBCGGGCEECTTSCEECSSSC
T ss_pred             cCCCCCCCcChhhCCcccceeeEccCCCEehhhcC
Confidence            34455789999999999999999999999999999

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.47  E-value=8.4e-15  Score=99.45  Aligned_cols=35  Identities=49%  Similarity=1.088  Sum_probs=32.4

Q ss_pred             ccCccccCccccccccccccceeeecCCcccchhh
Q 037934           84 KTTSALEKRCEICDKKVGSIELKCRCGHLYCGTHR  118 (141)
Q Consensus        84 ~~~~~~~~rC~~C~kkvgl~gf~CRCg~~fC~~HR  118 (141)
                      .+++.+++||+.|+|||||++|+||||++||+.||
T Consensus        19 ~~~k~kk~RC~~C~KKl~l~~~~CrCg~~FC~~HR   53 (74)
T d1wfpa_          19 DPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHR   53 (74)
T ss_dssp             CCTTCCCCBCSSSCCBCTTTCEECTTSCEECTTTC
T ss_pred             CCCCCCCCcChhcCCccCCCceecCCCChhhhccC
Confidence            35566799999999999999999999999999999

>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: AN1-type zinc finger protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.13  E-value=0.0037  Score=41.96  Aligned_cols=32  Identities=25%  Similarity=0.666  Sum_probs=26.5

Q ss_pred             CccccCcccc--ccccccccceee-ecCCcccchhh
Q 037934           86 TSALEKRCEI--CDKKVGSIELKC-RCGHLYCGTHR  118 (141)
Q Consensus        86 ~~~~~~rC~~--C~kkvgl~gf~C-RCg~~fC~~HR  118 (141)
                      ...+..+|..  |++ +-|+.|.| .|+..||..||
T Consensus        21 ~~~~~~~Cs~~~C~~-~~~lp~~C~~C~~~FC~~Hr   55 (86)
T d1wfea_          21 DEHKSYSCSFKGCTD-VELVAVICPYCEKNFCLRHR   55 (86)
T ss_dssp             SCSCCEECCSTTCCC-EESSCEECTTTCCEECGGGC
T ss_pred             CCCccCcCCCCCCCC-cccCcccchhhCcchhhccC
Confidence            3445678996  974 67899999 69999999999

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.51  E-value=0.097  Score=34.43  Aligned_cols=30  Identities=33%  Similarity=0.808  Sum_probs=25.4

Q ss_pred             ccCcccccccccccc--ceeee-cCCcccchhh
Q 037934           89 LEKRCEICDKKVGSI--ELKCR-CGHLYCGTHR  118 (141)
Q Consensus        89 ~~~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR  118 (141)
                      ..++|..|+++.+|+  -..|| ||.+||..+-
T Consensus         8 ~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~Cs   40 (88)
T d1wfka_           8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCL   40 (88)
T ss_dssp             CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTS
T ss_pred             ccCcCcccCchhccccccccccccChhhChHHh
Confidence            468999999999985  66786 9999998774

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.23  E-value=0.093  Score=32.66  Aligned_cols=28  Identities=39%  Similarity=1.057  Sum_probs=23.7

Q ss_pred             Ccccccccccccc--ceeee-cCCcccchhh
Q 037934           91 KRCEICDKKVGSI--ELKCR-CGHLYCGTHR  118 (141)
Q Consensus        91 ~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR  118 (141)
                      +.|..|+++.+|+  --.|| ||.+||+.+-
T Consensus         6 ~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs   36 (67)
T d1vfya_           6 DACMICSKKFSLLNRKHHCRSCGGVFCQEHS   36 (67)
T ss_dssp             SBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred             cccccCCCcccCcccccccccCCCEeccccc
Confidence            4699999999995  56787 9999999874

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.67  E-value=0.36  Score=30.28  Aligned_cols=28  Identities=29%  Similarity=0.897  Sum_probs=23.6

Q ss_pred             Ccccccccccccc--ceeee-cCCcccchhh
Q 037934           91 KRCEICDKKVGSI--ELKCR-CGHLYCGTHR  118 (141)
Q Consensus        91 ~rC~~C~kkvgl~--gf~CR-Cg~~fC~~HR  118 (141)
                      +.|..|+++.+++  --.|| ||.+||+.+-
T Consensus        14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~   44 (72)
T d1dvpa2          14 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT   44 (72)
T ss_dssp             SBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred             CccccCCCcccCccccccccccCCeeChhhh
Confidence            4699999999996  56675 9999999875