Citrus Sinensis ID: 037956

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCTSPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQPFTVDTLCMTMAE
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEHEEcccccccccc
Coil and Loop (DISEMBL)
mvkaggsekpslrkgswtpeeDRKLIAYIRRYGIwnwsempkyagllrcgksCRLRWmnylrpdirrgnftqeEDETIIKLHEQLGNRWSAIasrlpgrtdneiknhwhsrlskkrltknnqqqvpSVTKSLQETQTAAIFEFdeankqnqnppeiliadpipiipnnsreppkvltgctspspqlsadncssstsyvSANYEEIYKIQsskvsnydhpsenldelhnfweqpftvdtLCMTMAE
Flexible Loop (DISEMBL)
mvkaggsekpslrkgswtpeedrKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYlrpdirrgnftqEEDETIIKLHEQLGNRWSAIasrlpgrtdnEIKNHWhsrlskkrltknnqqqvpsVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCTSPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQPFTVDTLCMTMAE
Low Complexity Region (SEG)
MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCTSPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQPFTVDTLCMTMAE
Disordered region (IsUnstruct)
**********************RKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIAS**************************************************************LIA****************************************ANYEEIYKI**************LDELHNFWEQPFTVDTLCM****
Disordered Region (DISOPRED)
***AGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK*************************************************************************************************************DELHNFWEQPFTVDTLCMTM**
Disordered Region (DISEMBL)
*****************TPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKR***************LQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCTSPSP************YVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQPFTVDTLCMTMAE
Disordered Region (DISPRO)
***AGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTK*******************************************************************************************************LDELHNFWEQPFTVDTLC*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCTSPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQPFTVDTLCMTMAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q7XBH4	257	Myb-related protein Myb4	yes	no	0.493	0.470	0.688	3e-44
P81393	232	Myb-related protein 308 O	N/A	no	0.640	0.676	0.493	2e-41
Q9SZP1	282	Transcription repressor M	no	no	0.551	0.478	0.557	1e-40
P20024	340	Myb-related protein Zm1 O	N/A	no	0.436	0.314	0.682	3e-40
Q9S9K9	257	Transcription factor MYB3	no	no	0.734	0.700	0.449	3e-40
Q38851	236	Transcription repressor M	no	no	0.526	0.546	0.560	1e-39
P81395	274	Myb-related protein 330 O	N/A	no	0.485	0.434	0.613	2e-39
P20026	267	Myb-related protein Hv1 O	N/A	no	0.587	0.539	0.503	2e-39
P20025	255	Myb-related protein Zm38	N/A	no	0.489	0.470	0.591	3e-39
Q8LPH6	352	Transcription factor MYB8	no	no	0.436	0.303	0.682	4e-39

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/122 (68%), Positives = 100/122 (81%), Gaps = 1/122 (0%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           M +A   EK  L+KG WTPEED+ L+A+I+R+G  NW  +PK AGLLRCGKSCRLRW+NY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRPDI+RGNF++EE++TII LHE LGNRWSAIA+RLPGRTDNEIKN WH+ L KKRL   
Sbjct: 61  LRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHL-KKRLDAP 119

Query: 121 NQ 122
            Q
Sbjct: 120 AQ 121

Putative transcription factor which is may be involved in cold stress response.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 109/164 (66%), Gaps = 7/164 (4%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           M ++   EK    KG+WT EED +L+AYIR +G   W  +PK AGLLRCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRPD++RGNFT+EEDE IIKLH  LGN+WS IA RLPGRTDNEIKN+W++ + +K L++ 
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRG 120

Query: 121 NQQQVPSVTKSLQETQTA----AIFEFDEANKQNQNPPEILIAD 160
                P+  +S+ +   +        F  AN + ++    +  D
Sbjct: 121 ID---PTTHRSINDGTASQDQVTTISFSNANSKEEDTKHKVAVD 161

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/138 (55%), Positives = 102/138 (73%), Gaps = 3/138 (2%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           M ++   EK    KG+WT EED +L+AYI+ +G   W  +PK AGLLRCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRPD++RGNFT+EEDE IIKLH  LGN+WS IA RLPGRTDNEIKN+W++ + +K +   
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLI--- 117

Query: 121 NQQQVPSVTKSLQETQTA 138
           N+   P+  + +QE+  +
Sbjct: 118 NRGIDPTSHRPIQESSAS 135

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1

 Score =  165 bits (417), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 89/107 (83%)

Query: 9   KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68
           K  L +GSWTP+ED +LIAYI+++G  NW  +PK AGLLRCGKSCRLRW+NYLRPD++RG
Sbjct: 11  KVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRG 70

Query: 69  NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           NFT EE+E II+LH  LGN+WS IA+ LPGRTDNEIKN W++ L KK
Sbjct: 71  NFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKK 117

Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1.

Zea mays (taxid: 4577)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  165 bits (417), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/189 (44%), Positives = 117/189 (61%), Gaps = 9/189 (4%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           M ++   EK  + KG+WT EED+ L+ YIR++G   W  +P+ AGL RCGKSCRLRWMNY
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRPD++RGNFT+EEDE IIKLH  LGN+WS IA RLPGRTDNEIKN+W++ + +K L++ 
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRG 120

Query: 121 NQQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCT 180
                P+  + + E+  +       ++ QN     I +    P+ P   RE   ++  C 
Sbjct: 121 ID---PNSHRLINESVVSP------SSLQNDVVETIHLDFSGPVKPEPVREEIGMVNNCE 171

Query: 181 SPSPQLSAD 189
           S       D
Sbjct: 172 SSGTTSEKD 180

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 97/132 (73%), Gaps = 3/132 (2%)

Query: 8   EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67
           EK    KG+WT EED++L+ YIR +G   W  +PK AGLLRCGKSCRLRW+NYLRPD++R
Sbjct: 8   EKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKR 67

Query: 68  GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVPS 127
           GNFT +ED+ IIKLH  LGN+WS IA RLPGRTDNEIKN+W++ + +K L+       P 
Sbjct: 68  GNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGID---PQ 124

Query: 128 VTKSLQETQTAA 139
             + + E++T +
Sbjct: 125 THRQINESKTVS 136

Arabidopsis thaliana (taxid: 3702)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 93/119 (78%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           M ++   EK    KG+WT EED++LI YIR +G   W  +PK AGLLRCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTK 119
           LRPD++RGNFT+EEDE IIKLH  LGN+WS IA  LPGRTDNEIKN+W++ + +K +++
Sbjct: 61  LRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSR 119

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 103/157 (65%), Gaps = 13/157 (8%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           M ++   EK    KG+WT EED +L AYI+ +G   W  +PK AGLLRCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTK- 119
           LRPD++RGNF+ EEDE IIKLH  LGN+WS IA RLPGRTDNEIKN+W++ + +K  ++ 
Sbjct: 61  LRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRG 120

Query: 120 ---------NNQQQVPSVTKSLQETQ---TAAIFEFD 144
                    N+     ++T S +  Q     A+F  D
Sbjct: 121 IDPVTHRAINSDHAASNITISFESAQRDDKGAVFRRD 157

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 93/120 (77%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           M ++   EK    +G+WT EED +L+AYIR +G   W  +PK AGLLRCGKSCRLRW+NY
Sbjct: 1   MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRPD++RGNFT +ED+ I+KLH  LGN+WS IA+RLPGRTDNEIKN+W++ + +K L + 
Sbjct: 61  LRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRG 120

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  161 bits (408), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 86/107 (80%)

Query: 9   KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68
           K  LRKG W+PEED KL+ YI R+G   WS +PK AGL RCGKSCRLRW+NYLRPD++RG
Sbjct: 9   KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 69  NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
            F+Q+E+  II+LH  LGNRWS IA+RLPGRTDNEIKN W+S L KK
Sbjct: 69  AFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKK 115

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
224126823	256	predicted protein [Populus trichocarpa]	0.893	0.855	0.456	1e-50
224145547	250	predicted protein [Populus trichocarpa]	0.877	0.86	0.448	1e-50
356542119	251	PREDICTED: myb-related protein Myb4-like	0.869	0.848	0.467	3e-48
147837078	284	hypothetical protein VITISV_019320 [Viti	0.865	0.746	0.439	6e-48
225447697	257	PREDICTED: myb-related protein Myb4 [Vit	0.865	0.824	0.439	7e-48
302398929	253	MYB domain class transcription factor [M	0.579	0.561	0.605	9e-48
356515230	324	PREDICTED: transcription repressor MYB6-	0.469	0.354	0.704	3e-47
356544870	305	PREDICTED: transcription repressor MYB4	0.465	0.373	0.701	3e-47
356515228	318	PREDICTED: transcription repressor MYB4	0.538	0.415	0.625	1e-46
357453601	250	MYB transcription factor [Medicago trunc	0.897	0.88	0.441	5e-46

>gi|224126823|ref|XP_002319935.1| predicted protein [Populus trichocarpa] gi|222858311|gb|EEE95858.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 153/243 (62%), Gaps = 24/243 (9%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           MV+    +K  L+KG+WTPEEDRKL+AY+ RYG WNW ++PK+AGL RCGKSCRLRW+NY
Sbjct: 1   MVRTPCCDKTGLKKGAWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLQRCGKSCRLRWLNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRP+I+RGN+++EE+ETII LHE +GNRWSAIA++LPGRTDNEIKNHWH+ L KKRL K 
Sbjct: 61  LRPNIKRGNYSKEEEETIISLHETMGNRWSAIAAQLPGRTDNEIKNHWHTNL-KKRLRK- 118

Query: 121 NQQQVPSVTKSLQETQTAAIFEFDEANKQNQ--NPPEILIADPIPIIPNNSREPPKVLTG 178
                    KS+ E +  +  +    + +NQ  +  E  I+   P   N   E P     
Sbjct: 119 ---------KSVLEAKEMSSDDDLSQDDKNQEKDTEETDISTQNPATSNEIIESPS---- 165

Query: 179 CTSPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQPFTVDT 238
            ++ SPQ S+ + S+  +  + +++ I     + +  Y+ PS       NFW +PF  D 
Sbjct: 166 -STMSPQASSSDISTIDNVAATDWDLISDNNFAFLEAYEAPS------GNFWTEPFLSDD 218

Query: 239 LCM 241
             M
Sbjct: 219 YFM 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145547|ref|XP_002325681.1| predicted protein [Populus trichocarpa] gi|222862556|gb|EEF00063.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/241 (44%), Positives = 152/241 (63%), Gaps = 26/241 (10%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           M +    +K  L+KG+WTPEED KL+AY+ RYG WNW ++PKYAGL RCGKSCRLRW+NY
Sbjct: 1   MARTPCCDKTELKKGAWTPEEDMKLMAYVTRYGSWNWRQLPKYAGLQRCGKSCRLRWLNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRP+I+RGN+T+EE+E II LHE LGNRWSAIA++LPGRTDNEIKNHWH+ L KKRL++ 
Sbjct: 61  LRPNIKRGNYTKEEEEIIISLHETLGNRWSAIAAQLPGRTDNEIKNHWHTNL-KKRLSE- 118

Query: 121 NQQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCT 180
                    KS++ T++ +    D+   Q ++  E  +   IP     +     + +  +
Sbjct: 119 ---------KSVEATRSCS----DDDKGQEKDTGETEVNKQIP-----ANSAQIIESSSS 160

Query: 181 SPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQPFTVDTLC 240
           + SPQ S+ + S++ +  + N + +     S +  Y+ PS       NFW +PF  D   
Sbjct: 161 ALSPQASSGDFSTTDNIAATNMDLVSDDDLSFLEAYEIPS------GNFWTEPFLSDDYF 214

Query: 241 M 241
           M
Sbjct: 215 M 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542119|ref|XP_003539518.1| PREDICTED: myb-related protein Myb4-like [Glycine max]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/248 (46%), Positives = 153/248 (61%), Gaps = 35/248 (14%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           MVK   S+K   RKG+WTPEED+KLIAYI RYG WNW+ +PK+AGL RCGKSCRLRW+NY
Sbjct: 1   MVKNTYSDKSGHRKGTWTPEEDKKLIAYITRYGHWNWNLLPKFAGLERCGKSCRLRWLNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRP+I+RGN+TQEEDETIIK+ ++LGNRWS IA++LPGRTDNEIKN+WH+ L KK     
Sbjct: 61  LRPNIKRGNYTQEEDETIIKMVQRLGNRWSLIAAQLPGRTDNEIKNYWHTNLKKKY---- 116

Query: 121 NQQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCT 180
           +QQ V +      ET+ +        +K +Q+P E L        PNN  + P       
Sbjct: 117 HQQNVNA------ETEVS-------KSKDHQSPDEALPK------PNNVDDVP----FQN 153

Query: 181 SPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSN---YDHPSEN---LDELHN--FWEQ 232
            P    S D+C++S+  +S     I     S   +   +D P E+     ++ N  FW +
Sbjct: 154 LPPTSQSTDSCTTSSIIISPTQFSITTTGRSSDDSKEKFDIPYEDEFAFADVMNESFWLE 213

Query: 233 PFTVDTLC 240
           P+ VD  C
Sbjct: 214 PYVVDISC 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147837078|emb|CAN72480.1| hypothetical protein VITISV_019320 [Vitis vinifera]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 142/239 (59%), Gaps = 27/239 (11%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           MV+    +K  L+KG+WTPEED KL+AYI RYG WNW  +PKYAGL+RCGKSCRLRWMNY
Sbjct: 1   MVRTPCCDKSGLKKGTWTPEEDHKLVAYITRYGCWNWRRLPKYAGLMRCGKSCRLRWMNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRP+I+RGN+++EE++TIIKLH  LGNRWSAIA++LPGRTDNEIKN+WH+ L KKRL K 
Sbjct: 61  LRPNIKRGNYSKEEEDTIIKLHASLGNRWSAIAAQLPGRTDNEIKNYWHTNL-KKRLIKQ 119

Query: 121 N--QQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTG 178
                +   ++  L + +T+        N+   +P    I +  P  P  S       + 
Sbjct: 120 KTASHEANFISNGLSQRETS-------QNRSVVHPIASQILESYPFSPQPSSSTETSSST 172

Query: 179 CTSPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQPFTVD 237
             S +   ++ NC+S      A+ E + ++                   NFW +PF  D
Sbjct: 173 TDSSAAGGNSSNCASYDCSSLASMETVAELSG-----------------NFWTEPFFAD 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447697|ref|XP_002272704.1| PREDICTED: myb-related protein Myb4 [Vitis vinifera] gi|296081257|emb|CBI18001.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 142/239 (59%), Gaps = 27/239 (11%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           MV+    +K  L+KG+WTPEED KL+AYI RYG WNW  +PKYAGL+RCGKSCRLRWMNY
Sbjct: 1   MVRTPCCDKSGLKKGTWTPEEDHKLVAYITRYGCWNWRRLPKYAGLMRCGKSCRLRWMNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRP+I+RGN+++EE++TIIKLH  LGNRWSAIA++LPGRTDNEIKN+WH+ L KKRL K 
Sbjct: 61  LRPNIKRGNYSKEEEDTIIKLHASLGNRWSAIAAQLPGRTDNEIKNYWHTNL-KKRLIKQ 119

Query: 121 N--QQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTG 178
                +   ++  L + +T+        N+   +P    I +  P  P  S       + 
Sbjct: 120 KTASHEANFISNGLSQRETS-------QNRSVVHPIASQILESYPFSPQPSSSTETSSST 172

Query: 179 CTSPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQPFTVD 237
             S +   ++ NC+S      A+ E + ++                   NFW +PF  D
Sbjct: 173 TDSSAAGGNSSNCASYDCSSLASMETVAELSG-----------------NFWTEPFFAD 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398929|gb|ADL36759.1| MYB domain class transcription factor [Malus x domestica]

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 86/142 (60%), Positives = 112/142 (78%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           MV+    ++  ++KG+WTPEEDRKLI Y+ RYG WNW ++PK+AGL RCGKSCRLRWMNY
Sbjct: 1   MVRTPCRDENGMKKGTWTPEEDRKLIVYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRP+I+RGN+++EE+ETIIKLHE+LGNRWSAIA++LPGRTDNEIKNHWH+ L K+   K 
Sbjct: 61  LRPNIKRGNYSKEEEETIIKLHEKLGNRWSAIAAQLPGRTDNEIKNHWHTNLKKRTNKKQ 120

Query: 121 NQQQVPSVTKSLQETQTAAIFE 142
                 S   + +ET +++  E
Sbjct: 121 CNSSFSSSATNTEETPSSSNLE 142

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515230|ref|XP_003526304.1| PREDICTED: transcription repressor MYB6-like [Glycine max]

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 99/115 (86%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           MV+    +K  +RKG+WTPEED KLIAY+ RYG WNW ++PK+AGL RCGKSCRLRWMNY
Sbjct: 1   MVRTPSCDKSGMRKGTWTPEEDMKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           LRP+I+RGNFTQ+E+E II++H++LGNRWSAIA  LPGRTDNEIKNHWH+ L K+
Sbjct: 61  LRPNIKRGNFTQQEEECIIRMHKKLGNRWSAIAVELPGRTDNEIKNHWHTALKKR 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544870|ref|XP_003540870.1| PREDICTED: transcription repressor MYB4 [Glycine max]

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 80/114 (70%), Positives = 99/114 (86%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           MV+    +K   RKG+WTPEEDRKLIAY+ RYG WNW ++P++AGL RCGKSCRLRWMNY
Sbjct: 1   MVRTPSCDKSGTRKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114
           LRP+++RGNFTQ+EDE II++H++LGN+WSAIA+ LPGRTDNEIKNHWH+ L K
Sbjct: 61  LRPNVKRGNFTQQEDECIIRMHKKLGNKWSAIAAELPGRTDNEIKNHWHTTLKK 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515228|ref|XP_003526303.1| PREDICTED: transcription repressor MYB4 [Glycine max]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 106/136 (77%), Gaps = 4/136 (2%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           MV+    +K  +RKG+WT EEDRKLIAY+ RYG WNW ++P++AGL RCGKSCRLRWMNY
Sbjct: 1   MVRTPSCDKSGMRKGTWTLEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKR---- 116
           LRPD++RGNFTQ+E+E II++H++LGNRWS IA+ LPGRTDNEIKNHWH+ L K+     
Sbjct: 61  LRPDVKRGNFTQQEEEFIIRMHKKLGNRWSTIAAELPGRTDNEIKNHWHTTLKKRSQQNT 120

Query: 117 LTKNNQQQVPSVTKSL 132
           LTK   +   S  K L
Sbjct: 121 LTKEEARASKSKDKVL 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453601|ref|XP_003597081.1| MYB transcription factor [Medicago truncatula] gi|355486129|gb|AES67332.1| MYB transcription factor [Medicago truncatula]

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 106/240 (44%), Positives = 144/240 (60%), Gaps = 20/240 (8%)

Query: 1   MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
           MV+    +K  LRKG+WTPEED+KLIAY+ RYG WNW ++PK+AGL RCGKSCRLRW+NY
Sbjct: 1   MVRTPYCDKNGLRKGTWTPEEDKKLIAYVTRYGCWNWRQLPKFAGLERCGKSCRLRWLNY 60

Query: 61  LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
           LRPDI+RG+F+ EE+ETIIKLHE+LGNRW+ I++ LPGRTDNEIKN+WH+ + KK L KN
Sbjct: 61  LRPDIKRGSFSHEEEETIIKLHEKLGNRWTMISANLPGRTDNEIKNYWHTTI-KKTLVKN 119

Query: 121 NQQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCT 180
                    KS  +  T    + +  N      P+ L      ++ NNS           
Sbjct: 120 ---------KSNTKRGTKKAKDSNSKNHPTMEKPKKLGE----MLENNSDFNITSPPSSQ 166

Query: 181 SPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDH-PSENLDELHNFWEQPFTVDTL 239
             +   S  +   + +  + +YE      SS   +YD  P  +     NFW +P+ +D+L
Sbjct: 167 PSTSASSCISLMDTAATTTISYE-----NSSLFDDYDDLPFMDAYVSENFWTEPYIIDSL 221

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
TAIR|locus:2042526	249	MYB14 "myb domain protein 14"	0.930	0.915	0.450	6.4e-44
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.453	0.342	0.669	9.5e-42
TAIR|locus:2086233	285	MYB15 "myb domain protein 15"	0.546	0.470	0.595	9.6e-41
TAIR|locus:2207330	294	MYB63 "myb domain protein 63"	0.461	0.384	0.649	2e-40
TAIR|locus:2162585	319	MYB49 "myb domain protein 49"	0.791	0.608	0.455	2.6e-40
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.893	0.622	0.434	3.3e-40
TAIR|locus:2038520	246	MYB13 "myb domain protein 13"	0.518	0.516	0.628	4.2e-40
TAIR|locus:2132957	282	MYB41 "myb domain protein 41"	0.795	0.691	0.446	5.3e-40
TAIR|locus:2121259	282	MYB4 "myb domain protein 4" [A	0.522	0.453	0.572	1.1e-39
TAIR|locus:2059883	269	MYB7 "myb domain protein 7" [A	0.591	0.539	0.496	1.4e-39

TAIR|locus:2042526 MYB14 "myb domain protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 109/242 (45%), Positives = 146/242 (60%)

Query:     1 MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
             M +A   EK  +++G WTPEED+ LI YI  YG  NW  +PK+AGLLRCGKSCRLRW+NY
Sbjct:     1 MGRAPCCEKMGVKRGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINY 60

Query:    61 LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
             LRPDI+RGNFT +E++TII LHE LGNRWSAIA++LPGRTDNEIKN WH+ L KKRL+KN
Sbjct:    61 LRPDIKRGNFTPQEEQTIINLHESLGNRWSAIAAKLPGRTDNEIKNVWHTHL-KKRLSKN 119

Query:   121 -----NQQQVPSVTKSLQETQTAAIFEFDEANKQNQNPPEILIADPIPIIPNN--SREPP 173
                  + + V  + ++  E + + I   D A+ Q Q    I   D      ++  S E  
Sbjct:   120 LNNGGDTKDVNGINETTNEDKGSVIV--DTASLQ-QFSNSITTFDISNDNKDDIMSYEDI 176

Query:   174 KVLTGCTSPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHPSENLDELHNFWEQP 233
               L   +  S  +S DN + +   +  ++E +    S K S Y +     D++  FW   
Sbjct:   177 SALIDDSFWSDVISVDNSNKNEKKIE-DWEGLIDRNSKKCS-YSNSKLYNDDME-FWFDV 233

Query:   234 FT 235
             FT
Sbjct:   234 FT 235

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 75/112 (66%), Positives = 92/112 (82%)

Query:     8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67
             +K  L+KG WTPEED+KLI YI  +G  NW  +PK AGL RCGKSCRLRW NYLRPDI+R
Sbjct:     9 KKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKR 68

Query:    68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTK 119
             G F+ EE+ETII+LH  +GN+WSAIA+RLPGRTDNEIKN+W++ + +KRL K
Sbjct:    69 GRFSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHI-RKRLLK 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2086233 MYB15 "myb domain protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 81/136 (59%), Positives = 104/136 (76%)

Query:     1 MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
             M +A   EK  L++G WTPEED+ L+++I  +G  NW  +PK AGLLRCGKSCRLRWMNY
Sbjct:     1 MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60

Query:    61 LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN 120
             L+PDI+RGNFT+EE++ II LH+ LGNRWSAIA++LPGRTDNEIKN WH+ L KKRL ++
Sbjct:    61 LKPDIKRGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHL-KKRL-ED 118

Query:   121 NQQQVPSVTKSLQETQ 136
              Q   P  +   + T+
Sbjct:   119 YQPAKPKTSNKKKGTK 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2207330 MYB63 "myb domain protein 63" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 74/114 (64%), Positives = 96/114 (84%)

Query:     8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67
             +K  +++G W+PEED KLI++I+++G  NW  +PK +GLLRCGKSCRLRW+NYLRPD++R
Sbjct:    10 DKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYLRPDLKR 69

Query:    68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNN 121
             GNFT EE+ETIIKLH   GN+WS IAS+LPGRTDNEIKN WH+ L KKRL +++
Sbjct:    70 GNFTSEEEETIIKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHL-KKRLAQSS 122

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2162585 MYB49 "myb domain protein 49" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 92/202 (45%), Positives = 124/202 (61%)

Query:     1 MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
             M K+  SE+  ++KG WTPEED KL+ YI+ +G   W  +PK AGL RCGKSCRLRW NY
Sbjct:     1 MGKSSSSEESEVKKGPWTPEEDEKLVGYIQTHGPGKWRTLPKNAGLKRCGKSCRLRWTNY 60

Query:    61 LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK--RLT 118
             LRPDI+RG F+ +E+ETII+LH  LGN+WSAIA  LPGRTDNEIKN+W++ + KK  R+ 
Sbjct:    61 LRPDIKRGEFSLQEEETIIQLHRLLGNKWSAIAIHLPGRTDNEIKNYWNTHIKKKLLRMG 120

Query:   119 KNNQQQVPSVTK-SLQETQTAAIFEFDEANKQNQNPPEILIADPI-PIIPNN-SREPPKV 175
              +     P +    L    T+++F+   +  Q  N P  L    I P I N+ +     V
Sbjct:   121 IDPVTHCPRINLLQLSSFLTSSLFK---SMSQPMNTPFDLTTSNINPDILNHLTASLNNV 177

Query:   176 LTGCTSPSPQLSADNCSSSTSY 197
              T    P+ QL  D  +  T++
Sbjct:   178 QTESYQPNQQLQNDLNTDQTTF 199

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 99/228 (43%), Positives = 130/228 (57%)

Query:     9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68
             K  LRKG W+PEED KL+ YI R+G   WS +PK AGL RCGKSCRLRW+NYLRPD++RG
Sbjct:     9 KQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 68

Query:    69 NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQV--P 126
              F+Q+E+  II+LH  LGNRWS IA+RLPGRTDNEIKN W+S L KK   K        P
Sbjct:    69 AFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGIDPTTHKP 128

Query:   127 SVTKSLQETQTA-AIFEFDEANKQNQNPPEILIADPIPIIPNNSREPPKVLTGCTSPSPQ 185
              +T  LQ            E  K   +   +   D   ++  +S++ P      T+ + Q
Sbjct:   129 LITNELQSLNVIDQKLTSSEVVKSTGSINNL--HDQSMVV--SSQQGPWWFPANTTTTNQ 184

Query:   186 LSADNCSSSTSYVSANYEEIYKIQSSKVSNYDHP-SENLDELHNFWEQ 232
              SA  C SS++  + + + +  I S   S+   P + N     N WEQ
Sbjct:   185 NSAF-CFSSSNTTTVSDQIVSLISSMSTSSSPTPMTSNFSPAPNNWEQ 231

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2038520 MYB13 "myb domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 83/132 (62%), Positives = 99/132 (75%)

Query:     8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67
             EK  L+KG W+ EEDR LI YI  +G  NW  +PK AGLLRCGKSCRLRW+NYLRPDI+R
Sbjct:     8 EKIGLKKGPWSAEEDRILINYISLHGHPNWRALPKLAGLLRCGKSCRLRWINYLRPDIKR 67

Query:    68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRL----TKNNQQ 123
             GNFT  E++TII LH+ LGNRWSAIA++LPGRTDNEIKN WH+ L KKRL     +NN++
Sbjct:    68 GNFTPHEEDTIISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHL-KKRLHHSQDQNNKE 126

Query:   124 QVPSVTKSLQET 135
                S T +   T
Sbjct:   127 DFVSTTAAEMPT 138

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2132957 MYB41 "myb domain protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 92/206 (44%), Positives = 124/206 (60%)

Query:     8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67
             +K  ++KG WT EED+KLI YIR +G  NW  +PK AGL RCGKSCRLRW NYLRPDI+R
Sbjct:     8 DKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNYLRPDIKR 67

Query:    68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVP- 126
             G F+ EE+ETII+LH  +GN+WSAIA+RLPGRTDNEIKNHW++ + +KRL ++    V  
Sbjct:    68 GRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHI-RKRLVRSGIDPVTH 126

Query:   127 SVTKSLQETQTAAIFEFDEAN--------KQNQNPPEILIADPI-PIIPNNSREPPKVLT 177
             S    L +  +     F++ N            NP  + +A  + P+   N   P  +  
Sbjct:   127 SPRLDLLDLSSLLSALFNQPNFSAVATHASSLLNPDVLRLASLLLPLQNPNPVYPSNLDQ 186

Query:   178 GCTSPSPQLSADNCSSSTSYVSANYE 203
                +P+    +    + TS V  NYE
Sbjct:   187 NLQTPNTSSESSQPQAETSTVPTNYE 212

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0016049 "cell growth" evidence=IMP

GO:0042335 "cuticle development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080090 "regulation of primary metabolic process" evidence=IMP

GO:0080091 "regulation of raffinose metabolic process" evidence=IMP

TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 75/131 (57%), Positives = 98/131 (74%)

Query:     8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67
             EK    KG+WT EED +L+AYI+ +G   W  +PK AGLLRCGKSCRLRW+NYLRPD++R
Sbjct:     8 EKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKR 67

Query:    68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVPS 127
             GNFT+EEDE IIKLH  LGN+WS IA RLPGRTDNEIKN+W++ + +K + +      P+
Sbjct:    68 GNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGID---PT 124

Query:   128 VTKSLQETQTA 138
               + +QE+  +
Sbjct:   125 SHRPIQESSAS 135

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0010224 "response to UV-B" evidence=IEP;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 79/159 (49%), Positives = 111/159 (69%)

Query:     8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67
             EK  + KG+WT EED +L++YI+ +G   W  +P+ AGLLRCGKSCRLRW+NYLRPD++R
Sbjct:     8 EKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINYLRPDLKR 67

Query:    68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN------- 120
             GNFT +EDE IIKLH  LGN+WS IA+RLPGRTDNEIKN+W++ + +K L+K        
Sbjct:    68 GNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSKGIDPATHR 127

Query:   121 --NQQQVPSVTKSLQET--QTAAIFEFDEANK---QNQN 152
               N+ ++  + K+  +     + + +F+E +K   Q QN
Sbjct:   128 GINEAKISDLKKTKDQIVKDVSFVTKFEETDKSGDQKQN 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029221001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (257 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	245
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	7e-47
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	7e-44
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-16
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	1e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	9e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-09
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	7e-09

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  161 bits (408), Expect = 7e-47
 Identities = 79/146 (54%), Positives = 100/146 (68%), Gaps = 13/146 (8%)

Query: 9   KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68
           K  LRKG W+PEED KL+ +I +YG   WS +PK AGL RCGKSCRLRW+NYLRPD++RG
Sbjct: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 69  NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVPSV 128
            F+Q+E+  II+LH  LGNRWS IA++LPGRTDNEIKN W+S L KK   +      P+ 
Sbjct: 69  TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGID---PNT 125

Query: 129 TKSLQETQTAAIFEFDEANKQNQNPP 154
            K L E +          N +++NPP
Sbjct: 126 HKPLSEVE----------NGEDKNPP 141

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  147 bits (373), Expect = 7e-44
 Identities = 65/116 (56%), Positives = 86/116 (74%)

Query: 9   KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68
           K  +++G WT EED  L+++I++ G   W  +PK AGLLRCGKSCRLRWMNYLRP ++RG
Sbjct: 20  KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 79

Query: 69  NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQ 124
             T +E++ I++LH  LGNRWS IA R+PGRTDNEIKN+W++ L KK L +    Q
Sbjct: 80  GITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQ 135

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 69.9 bits (172), Expect = 3e-16
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 67  RGNFTQEEDETIIKLHEQLGNR-WSAIASRLPGRTDNEIKNHWHSRL 112
           RG +T EEDE +I+  ++ GN  WS IA  LPGRTDN+ KN W++ L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 12  LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL--RCGKSCRLRWMNYLRPDIRRGN 69
            + GSW   ED  L A +++ G  NWS   K A LL    GK    RW N+L P +++ N
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWS---KVASLLISSTGKQSSNRWNNHLNPQLKKKN 74

Query: 70  FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHW 108
           +++EEDE +I L ++LG +WS IA     RT  +    +
Sbjct: 75  WSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY 113

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 63.3 bits (155), Expect = 9e-14
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61
          +G WTPEED  LI  ++++G  NWS++ K+    R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.9 bits (146), Expect = 2e-12
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 67  RGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLSK 114
           +G +T+EEDE +I+L ++ G N W  IA  LPGRT  + +  W + L  
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 57.6 bits (140), Expect = 1e-11
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 69  NFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRL 112
            +T+EEDE +++  ++ G N W  IA  LPGRT  + +  W + L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 56.6 bits (137), Expect = 4e-11
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 17 WTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDE 76
          WT EED KL+  + +YG  +W ++ +  G  R   +CR RW   LRP   RG +T+EED+
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEELG--RTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63
          KG WT EED  LI  +++YG  NW ++ K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 16 SWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61
           WT EED  L+  +++YG  NW ++ K     R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 50.4 bits (121), Expect = 7e-09
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 70  FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKR 116
           +T+EEDE ++KL E+ GN W  IA  L GRT +  ++ W  +L  KR
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.78
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.67
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.62
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.58
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.47
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.44
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.43
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.28
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.27
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.16
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.1
PLN03212	249	Transcription repressor MYB5; Provisional	99.07
PLN03091	459	hypothetical protein; Provisional	99.01
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.0
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.96
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.84
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.12
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.98
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.83
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.72
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.64
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.31
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.18
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.1
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.09
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.07
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.02
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.0
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.92
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.81
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.46
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.42
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.17
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.17
PRK13923	170	putative spore coat protein regulator protein YlbO	96.05
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.97
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.72
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.37
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.13
PRK13923	170	putative spore coat protein regulator protein YlbO	94.42
KOG2656	445	consensus DNA methyltransferase 1-associated prote	93.98
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.58
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.73
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.92
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	90.43
KOG1194	534	consensus Predicted DNA-binding protein, contains	88.83
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	87.83
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	85.59
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	84.19
smart00595	89	MADF subfamily of SANT domain.	80.88
PF04545	50	Sigma70_r4: Sigma-70, region 4; InterPro: IPR00763	80.21

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=3.3e-37  Score=271.79  Aligned_cols=114  Identities=55%  Similarity=1.075  Sum_probs=109.4

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHH
Q 037956            3 KAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLH   82 (245)
Q Consensus         3 R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv   82 (245)
                      |++||.|++++|++||+|||++|+.+|++||..+|..||+.++.+|+++|||+||.+||+|.+++++||.|||++|+++|
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            67999999999999999999999999999999899999999964499999999999999999999999999999999999


Q ss_pred             HHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 037956           83 EQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKR  116 (245)
Q Consensus        83 ~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkkk~  116 (245)
                      ..||++|..||++|||||+++|||||+.+++++.
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l  127 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL  127 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999998543

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=5.7e-37  Score=287.76  Aligned_cols=115  Identities=63%  Similarity=1.116  Sum_probs=111.8

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHH
Q 037956            1 MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIK   80 (245)
Q Consensus         1 m~R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~   80 (245)
                      |||++||.|.+++||+||+|||++|+++|.+||..+|..||+.++.+|+++|||+||.+||+|.+++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999755999999999999999999999999999999999


Q ss_pred             HHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 037956           81 LHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK  115 (245)
Q Consensus        81 lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkkk  115 (245)
                      +|.+||++|..||++|+|||+++|||||+.+|+|+
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999853

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=8.7e-37  Score=270.72  Aligned_cols=111  Identities=63%  Similarity=1.136  Sum_probs=103.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 037956            9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNR   88 (245)
Q Consensus         9 kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~k   88 (245)
                      +|.+.||+||+|||++|+++|++||+++|..||+.+|.+|++|+||+||.|||+|++++|.||+|||++|+++|..||++
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            45566899999999999999999999999999999995599999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCCCHHHHHHHHHHhhhhhhhhhh
Q 037956           89 WSAIASRLPGRTDNEIKNHWHSRLSKKRLTKN  120 (245)
Q Consensus        89 W~~IA~~lpgRT~~~~Knrw~~~lkkk~~~k~  120 (245)
                      |+.||++|||||+++|||+|+..||| ++.+.
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkk-kl~~~  114 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKK-KLLKM  114 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHH-HHHHc
Confidence            99999999999999999999999984 44433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.78  E-value=1.1e-19  Score=176.90  Aligned_cols=106  Identities=26%  Similarity=0.546  Sum_probs=100.9

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHH
Q 037956            1 MVKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIK   80 (245)
Q Consensus         1 m~R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~   80 (245)
                      ++|+..+++|++++|+||++||-+|+.+|.+||..+|-+|-..+|+ |+..|||+||.|.|+...+.+.||-.||+.|+.
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPn-RSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPN-RSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCC-ccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            4799999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             HHHHhC-CcHHHHhhhCCCCCHHHHHHH
Q 037956           81 LHEQLG-NRWSAIASRLPGRTDNEIKNH  107 (245)
Q Consensus        81 lv~~~G-~kW~~IA~~lpgRT~~~~Knr  107 (245)
                      +|..|| ++|.+||..||.||..|...|
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rr  453 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRR  453 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHH
Confidence            999999 789999999999999665443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=3.5e-18  Score=166.48  Aligned_cols=109  Identities=23%  Similarity=0.471  Sum_probs=96.5

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccc------------------------------
Q 037956            5 GGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCR------------------------------   54 (245)
Q Consensus         5 ~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr------------------------------   54 (245)
                      +..+.|.++|.-|++|||++|..+...+|..+|..||..+|+.|+.-||.                              
T Consensus       244 ~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~  323 (939)
T KOG0049|consen  244 YNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKIT  323 (939)
T ss_pred             hhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHh
Confidence            45678888888888888888888888888777888887777777777776                              


Q ss_pred             ------------------------ccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHH
Q 037956           55 ------------------------LRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWH  109 (245)
Q Consensus        55 ------------------------~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~  109 (245)
                                              .||...|+|.+++|+||.+||.+|+.+|.+||. .|.+|...+|||++.||+.||+
T Consensus       324 ~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~  403 (939)
T KOG0049|consen  324 SINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYT  403 (939)
T ss_pred             hccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHH
Confidence                                    788888999999999999999999999999996 5999999999999999999999


Q ss_pred             Hhhh
Q 037956          110 SRLS  113 (245)
Q Consensus       110 ~~lk  113 (245)
                      +.|.
T Consensus       404 nvL~  407 (939)
T KOG0049|consen  404 NVLN  407 (939)
T ss_pred             HHHH
Confidence            9987

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.67  E-value=2.1e-17  Score=116.47  Aligned_cols=60  Identities=45%  Similarity=0.932  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHH
Q 037956           17 WTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETI   78 (245)
Q Consensus        17 WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~L   78 (245)
                      ||+|||++|+.+|..||. +|..||++||. |++.||+.||.++|+|.+++++||.+||+.|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~-Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLGN-RTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHSTT-S-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHCc-CCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999996 99999999986 9999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.62  E-value=2.7e-16  Score=152.13  Aligned_cols=102  Identities=33%  Similarity=0.623  Sum_probs=98.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHH
Q 037956           11 SLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWS   90 (245)
Q Consensus        11 ~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~   90 (245)
                      ..+.|.|+..||+.|..+|+.||+.+|..||..++. |+++||+.||.++++|.+++.+|+.+||+.|+.+..++|.+|+
T Consensus        17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~-~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ws   95 (512)
T COG5147          17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS   95 (512)
T ss_pred             eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcc-cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhh
Confidence            456789999999999999999999999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCHHHHHHHHHHhhh
Q 037956           91 AIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        91 ~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      .||..++||++.+|.+||...+.
T Consensus        96 tia~~~d~rt~~~~~ery~~~~~  118 (512)
T COG5147          96 TIADYKDRRTAQQCVERYVNTLE  118 (512)
T ss_pred             hhccccCccchHHHHHHHHHHhh
Confidence            99999999999999999998776

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=4.4e-16  Score=148.84  Aligned_cols=101  Identities=28%  Similarity=0.645  Sum_probs=96.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHH
Q 037956           12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSA   91 (245)
Q Consensus        12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~   91 (245)
                      ++.|.|+.-||+.|..+|.+||.+.|+.|++.+.- .+++||+.||..+|+|.|++..|+.|||+.|+.++..+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~-kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNR-KTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhh-cchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            45688999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHhhhh
Q 037956           92 IASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        92 IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      ||..| ||++++|-.||..+|-.
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~  105 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDV  105 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHH
Confidence            99999 99999999999998863

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.47  E-value=3.8e-14  Score=138.75  Aligned_cols=107  Identities=28%  Similarity=0.567  Sum_probs=95.0

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC--CCCCCCCHHHHHHHHH
Q 037956            3 KAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD--IRRGNFTQEEDETIIK   80 (245)
Q Consensus         3 R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~--i~k~~WT~EED~~Ll~   80 (245)
                      |++....+  .+|.||+||++.|..+|..+|. .|..|++.||  |.+..||+||.+|..+.  .+++.||.||++.|++
T Consensus       375 R~y~~FE~--~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk  449 (607)
T KOG0051|consen  375 RAYTPFEN--KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLK  449 (607)
T ss_pred             hcCCcccc--ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHH
Confidence            44444444  8999999999999999999997 9999999999  99999999999999887  4899999999999999


Q ss_pred             HHH-------Hh-------------------CCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           81 LHE-------QL-------------------GNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        81 lv~-------~~-------------------G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      +|.       .+                   +-.|+.|++.+..|+..+|+-+|+.++.+
T Consensus       450 ~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~  509 (607)
T KOG0051|consen  450 TVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTS  509 (607)
T ss_pred             HHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhh
Confidence            995       33                   12499999999999999999999999974

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.44  E-value=1.6e-13  Score=92.91  Aligned_cols=46  Identities=37%  Similarity=0.796  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-HHHHhhhCC-CCCHHHHHHHHHHhh
Q 037956           67 RGNFTQEEDETIIKLHEQLGNR-WSAIASRLP-GRTDNEIKNHWHSRL  112 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~k-W~~IA~~lp-gRT~~~~Knrw~~~l  112 (245)
                      +++||+|||++|++++.+||.. |..||..|+ |||..+|++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5789999999999999999988 999999999 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.43  E-value=1.7e-14  Score=97.78  Aligned_cols=48  Identities=42%  Similarity=0.776  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL   61 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L   61 (245)
                      |++||+|||++|+++|.+||.++|..||..||++|++.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999679999999993399999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.28  E-value=6.3e-12  Score=88.39  Aligned_cols=44  Identities=39%  Similarity=0.776  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           70 FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        70 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ||+|||++|+++|..||++|..||.+|+.||..+|++||+..|+
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~   44 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLR   44 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence            99999999999999999999999999966999999999999775

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.27  E-value=1.1e-11  Score=81.68  Aligned_cols=47  Identities=43%  Similarity=0.890  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +++||++||.+|+.++..|| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998765

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.16  E-value=8.1e-11  Score=76.37  Aligned_cols=44  Identities=39%  Similarity=0.809  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhh
Q 037956           69 NFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRL  112 (245)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~l  112 (245)
                      +||.+|+..|+.++..|| .+|..||..|++||..+|++||+.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 99999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.10  E-value=2.5e-11  Score=79.88  Aligned_cols=48  Identities=44%  Similarity=0.859  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      +++||++||++|..++..||..+|..||..+++ |++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~-rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCC-CCHHHHHHHHHHHcC
Confidence            478999999999999999996699999999998 999999999998764

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.07  E-value=1e-11  Score=110.36  Aligned_cols=60  Identities=22%  Similarity=0.350  Sum_probs=55.1

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC
Q 037956            3 KAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD   64 (245)
Q Consensus         3 R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~   64 (245)
                      |+-..++|++++++||+|||++|+.++..||. .|..||++|++ |+..+|+.||...|+..
T Consensus        67 RW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~LpG-RTDnqIKNRWns~LrK~  126 (249)
T PLN03212         67 RWMNYLRPSVKRGGITSDEEDLILRLHRLLGN-RWSLIAGRIPG-RTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             HHHHhhchhcccCCCChHHHHHHHHHHHhccc-cHHHHHhhcCC-CCHHHHHHHHHHHHhHH
Confidence            55667899999999999999999999999997 89999999998 99999999999877754

>PLN03091 hypothetical protein; Provisional

Probab=99.01  E-value=3.8e-11  Score=114.05  Aligned_cols=59  Identities=19%  Similarity=0.383  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccC
Q 037956            3 KAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP   63 (245)
Q Consensus         3 R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p   63 (245)
                      |+-..++|+++|++||+|||++|++++..||. .|..||++|++ |+..+|+.||...|+.
T Consensus        56 RW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn-KWskIAk~LPG-RTDnqIKNRWnslLKK  114 (459)
T PLN03091         56 RWINYLRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLPG-RTDNEIKNLWNSCLKK  114 (459)
T ss_pred             HHHhccCCcccCCCCCHHHHHHHHHHHHHhCc-chHHHHHhcCC-CCHHHHHHHHHHHHHH
Confidence            45567899999999999999999999999997 99999999998 9999999999987654

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.00  E-value=3.2e-10  Score=100.81  Aligned_cols=51  Identities=27%  Similarity=0.458  Sum_probs=47.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCC-CCCHHHHHHHHHHhhh
Q 037956           63 PDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLP-GRTDNEIKNHWHSRLS  113 (245)
Q Consensus        63 p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lp-gRT~~~~Knrw~~~lk  113 (245)
                      +.+.+|+||+|||++|+++|++||. +|..||+.++ ||++.+||-||.++|+
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLr   57 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLR   57 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccC
Confidence            3455899999999999999999995 6999999998 9999999999999997

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.96  E-value=1.9e-10  Score=74.57  Aligned_cols=45  Identities=42%  Similarity=0.804  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccc
Q 037956           16 SWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL   61 (245)
Q Consensus        16 ~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L   61 (245)
                      +||++||+.|+.++..||..+|..||..+++ |++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHhC
Confidence            5999999999999999996699999999998 99999999998653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.84  E-value=2.8e-09  Score=104.93  Aligned_cols=99  Identities=26%  Similarity=0.403  Sum_probs=84.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----------------------CCcccccccccCccccccccccccccccCCC-CCCC
Q 037956           14 KGSWTPEEDRKLIAYIRRYGI-----------------------WNWSEMPKYAGLLRCGKSCRLRWMNYLRPDI-RRGN   69 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~-----------------------~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i-~k~~   69 (245)
                      -+.|+++||..|-..|..|-.                       +-|..|...+|. |+.+....+-++...|-- .+|.
T Consensus       308 ~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~-R~~~siy~~~rR~y~~FE~~rg~  386 (607)
T KOG0051|consen  308 LKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPY-RDRKSIYHHLRRAYTPFENKRGK  386 (607)
T ss_pred             hhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCc-ccchhHHHHHHhcCCccccccCC
Confidence            378999999999999987721                       126778888999 999998774445444433 9999


Q ss_pred             CCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           70 FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        70 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      ||+||++.|..+|.++|+.|..|+..| ||.+.+|++||..+++-
T Consensus       387 wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~  430 (607)
T KOG0051|consen  387 WTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKC  430 (607)
T ss_pred             CCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhcc
Confidence            999999999999999999999999999 99999999999998864

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.12  E-value=1.1e-06  Score=85.93  Aligned_cols=107  Identities=19%  Similarity=0.272  Sum_probs=91.6

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHH
Q 037956            3 KAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLH   82 (245)
Q Consensus         3 R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv   82 (245)
                      |+-..+.|.++++.|+.+||+.|+.+-..+|. .|..||..+++ |++.+|.+||.+.+.+... .+|+.......+..+
T Consensus        61 rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d~-rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~  137 (512)
T COG5147          61 RWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKDR-RTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKI  137 (512)
T ss_pred             hhhhhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccCc-cchHHHHHHHHHHhhhhhc-cccccccchhhcccc
Confidence            34456789999999999999999999999998 79999999998 9999999999999987666 889999999999999


Q ss_pred             HHhCCcHHHHhhhCCCCCHHHHHHHHHHhh
Q 037956           83 EQLGNRWSAIASRLPGRTDNEIKNHWHSRL  112 (245)
Q Consensus        83 ~~~G~kW~~IA~~lpgRT~~~~Knrw~~~l  112 (245)
                      ..|+..|.++....-.+-...|.|++..+.
T Consensus       138 d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~  167 (512)
T COG5147         138 DPFNENSARRPDIYEDELLEREVNREASYR  167 (512)
T ss_pred             CchhhhhhhhhhhhhcccchhhhhHHHHHH
Confidence            999988888877666666667777775443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.98  E-value=3.2e-06  Score=59.71  Aligned_cols=49  Identities=10%  Similarity=0.247  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCc---ccccccccCcc-ccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGIWNW---SEMPKYAGLLR-CGKSCRLRWMNYL   61 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~~nW---~~Ia~~~~~~R-t~kqCr~Rw~n~L   61 (245)
                      ++-.||+||.++++.+|+.+|.++|   ..|+..|+..| +..||+.+.+.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999999899   99999887546 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.83  E-value=5.5e-06  Score=78.90  Aligned_cols=87  Identities=24%  Similarity=0.437  Sum_probs=62.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccc-cCCCCCCCC-------CHHHHHHHHHH-HH
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL-RPDIRRGNF-------TQEEDETIIKL-HE   83 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L-~p~i~k~~W-------T~EED~~Ll~l-v~   83 (245)
                      -...||.+|+-+|++++..||-|||..||.++|+ |++.+|+++|.+++ +..+-.-+|       ...|+...-.. +.
T Consensus        71 ~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGt-Ktkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~~~~  149 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETYGFGNWQDIADHIGT-KTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKNRAE  149 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcc-cchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhcccccc
Confidence            3567999999999999999999999999999998 99999999999854 333222222       23344433333 22


Q ss_pred             HhCC-------------cHHHHhhhCCCCC
Q 037956           84 QLGN-------------RWSAIASRLPGRT  100 (245)
Q Consensus        84 ~~G~-------------kW~~IA~~lpgRT  100 (245)
                      .++.             .=.+|+.+||+|.
T Consensus       150 ~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~  179 (438)
T KOG0457|consen  150 PFQPTDLVPRKPGVSNPLRREISGYMPGRL  179 (438)
T ss_pred             cCCCCCCCCCCCCCCCchHHHHhhhCccch
Confidence            2322             2458888899985

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.72  E-value=6.1e-05  Score=71.89  Aligned_cols=52  Identities=23%  Similarity=0.434  Sum_probs=46.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +-.+-...||.+|+-+|++++..|| ++|..||.++..|+..+||.+|.+++-
T Consensus        67 s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   67 SFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            3345567899999999999999999 899999999988999999999987664

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.64  E-value=0.00016  Score=51.04  Aligned_cols=47  Identities=17%  Similarity=0.360  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-cH---HHHhhhCC-CC-CHHHHHHHHHHhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLGN-RW---SAIASRLP-GR-TDNEIKNHWHSRLS  113 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~-kW---~~IA~~lp-gR-T~~~~Knrw~~~lk  113 (245)
                      +-.||+||...++++++.||. .|   ..|+..|. .| |..+|+.+.+.+.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999996 99   99999884 35 99999999886543

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.31  E-value=0.00041  Score=60.53  Aligned_cols=100  Identities=20%  Similarity=0.364  Sum_probs=71.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccCc--cccccccccccccc-cCCC--------------------CCCCCCH
Q 037956           16 SWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL--RCGKSCRLRWMNYL-RPDI--------------------RRGNFTQ   72 (245)
Q Consensus        16 ~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~--Rt~kqCr~Rw~n~L-~p~i--------------------~k~~WT~   72 (245)
                      +|+|++|-.|+.+|..-.  +-..|++-+...  -|-+.+.+||...| +|.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998643  566666654432  34556778998865 4443                    2468999


Q ss_pred             HHHHHHHHHHHHhCC---cHHHHhh-----hCCCCCHHHHHHHHHHhhhhhhhh
Q 037956           73 EEDETIIKLHEQLGN---RWSAIAS-----RLPGRTDNEIKNHWHSRLSKKRLT  118 (245)
Q Consensus        73 EED~~Ll~lv~~~G~---kW~~IA~-----~lpgRT~~~~Knrw~~~lkkk~~~  118 (245)
                      +|+++|........+   .+.+|=.     +-++||+.++.++|..+.+ ..+-
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq-y~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ-YHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH-hchh
Confidence            999999997766543   4777633     2378999999999995443 4443

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.18  E-value=0.00031  Score=68.54  Aligned_cols=49  Identities=35%  Similarity=0.584  Sum_probs=45.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           65 IRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        65 i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ++.|-|+.-||+.|--++.+|| +.|+.|++.|+-.+..+|++||+..+.
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ld   54 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLD   54 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhC
Confidence            4678899999999999999999 579999999999999999999998775

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.10  E-value=0.00084  Score=48.60  Aligned_cols=49  Identities=20%  Similarity=0.482  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-HHHHhhhCC-CCCHHHHHHHHHHhhhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLG--------NR-WSAIASRLP-GRTDNEIKNHWHSRLSKK  115 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G--------~k-W~~IA~~lp-gRT~~~~Knrw~~~lkkk  115 (245)
                      +.+||.+||..|++.|..+.        ++ |.+++..-+ .+|-.+.|+||...|+.+
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            45899999999999997653        22 999999877 999999999999888743

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.09  E-value=0.00054  Score=51.07  Aligned_cols=49  Identities=33%  Similarity=0.589  Sum_probs=35.1

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------cHHHHhhhC----CCCCHHHHHHHHHHhhhhh
Q 037956           67 RGNFTQEEDETIIKLHEQ------LG--N------RWSAIASRL----PGRTDNEIKNHWHSRLSKK  115 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~------~G--~------kW~~IA~~l----pgRT~~~~Knrw~~~lkkk  115 (245)
                      +..||.+|...|++++..      ++  +      -|..||..|    ..||+.||+++|.++.++-
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            357999999999999876      21  1      399999987    3699999999999977643

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.07  E-value=0.00017  Score=69.46  Aligned_cols=46  Identities=24%  Similarity=0.595  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY   60 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~   60 (245)
                      ...+||.+|..+|++.|+.||. +|.+||+++|+ |+..||..||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVgt-Kt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVGT-KTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhCC-CCHHHHHHHHHcC
Confidence            4568999999999999999997 99999999998 9999999999863

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.02  E-value=0.00098  Score=65.50  Aligned_cols=45  Identities=18%  Similarity=0.400  Sum_probs=42.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHH
Q 037956           66 RRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHS  110 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~  110 (245)
                      .+..||.+|..+|++++++||..|.+||.++.+||..+|--+|-.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence            457899999999999999999999999999999999999999865

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.00  E-value=0.00093  Score=64.57  Aligned_cols=43  Identities=19%  Similarity=0.366  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHH
Q 037956           68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHS  110 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~  110 (245)
                      .+||.+|..+|++.++.||..|.+||.++..||..||--||-.
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence            4899999999999999999999999999999999999999865

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.92  E-value=0.00035  Score=68.62  Aligned_cols=47  Identities=23%  Similarity=0.598  Sum_probs=43.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccc
Q 037956           12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY   60 (245)
Q Consensus        12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~   60 (245)
                      .-++.||.+|.-+|+++|+.||. +|.+||.++++ |+..||..++.+.
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg~-ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVGT-KSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccCC-CCHHHHHHHHHhc
Confidence            34678999999999999999998 99999999998 9999999999863

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.81  E-value=0.0016  Score=55.00  Aligned_cols=49  Identities=20%  Similarity=0.325  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---C----cHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLG---N----RWSAIASRLPGRTDNEIKNHWHSRLSKK  115 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G---~----kW~~IA~~lpgRT~~~~Knrw~~~lkkk  115 (245)
                      ....||.|||.+|-+.|..|-   +    ....+|..| +||+.+|.=||+..+|++
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkq   58 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQ   58 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHH
Confidence            457899999999999998873   2    388999999 999999999999999964

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.46  E-value=0.0097  Score=43.51  Aligned_cols=48  Identities=35%  Similarity=0.630  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----C-------------cHHHHhhhC-----CCCCHHHHHHHHHHhhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLG----N-------------RWSAIASRL-----PGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G----~-------------kW~~IA~~l-----pgRT~~~~Knrw~~~lkk  114 (245)
                      ...||.+|...|++++.+|.    +             .|..|+..|     +.||..+|+.+|..+...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            46799999999999998763    1             299999987     359999999999987753

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.42  E-value=0.00067  Score=49.13  Aligned_cols=52  Identities=23%  Similarity=0.347  Sum_probs=32.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------C--CcccccccccCccccccccccccccccCCC
Q 037956           14 KGSWTPEEDRKLIAYIRRYGI------W--NWSEMPKYAGLLRCGKSCRLRWMNYLRPDI   65 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~------~--nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i   65 (245)
                      |.+||.+||++|+.+|..+..      |  =|.+++..-++.++-.+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            568999999999999976532      2  299999887754888899999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.17  E-value=0.0011  Score=55.99  Aligned_cols=49  Identities=31%  Similarity=0.544  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC------CCcccccccccCccccccccccccccccC
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGI------WNWSEMPKYAGLLRCGKSCRLRWMNYLRP   63 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~------~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p   63 (245)
                      +...||.|||.+|...|.+|-.      ....+++..++  ||+--|.-||+.+++.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            5678999999999999999832      24788888888  9999999999999874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.17  E-value=0.00093  Score=49.79  Aligned_cols=48  Identities=29%  Similarity=0.583  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C---C----CCcccccccc---cCccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRR--Y----G---I----WNWSEMPKYA---GLLRCGKSCRLRWMNYL   61 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~--~----g---~----~nW~~Ia~~~---~~~Rt~kqCr~Rw~n~L   61 (245)
                      |..||.+|...|+.++..  +    +   .    .-|..||..|   |..|++.||+.||.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            457999999999999876  1    1   1    1499999976   55699999999998743

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.05  E-value=0.0072  Score=51.60  Aligned_cols=50  Identities=22%  Similarity=0.332  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc-------HHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLGNR-------WSAIASRLPGRTDNEIKNHWHSRLSKKR  116 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G~k-------W~~IA~~lpgRT~~~~Knrw~~~lkkk~  116 (245)
                      +...||.|+|.+|-+.|..|+..       ...++..| +||..+|.-||+..++++.
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            46789999999999998888732       66777888 9999999999999998543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.97  E-value=0.0017  Score=60.37  Aligned_cols=47  Identities=21%  Similarity=0.578  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccccc
Q 037956           15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      --|+..|+-+|++.....|-|||..||.++|. |....|+.+|..++.
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGs-r~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGS-RAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhh-hhhHHHHHHHHHHHh
Confidence            35999999999999999999999999999997 999999999998765

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.72  E-value=0.016  Score=53.97  Aligned_cols=49  Identities=27%  Similarity=0.512  Sum_probs=43.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           65 IRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        65 i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      |--..|+..|+.+|++....+| ++|..||.++..|+...||.+|..+.-
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            3446799999999999999999 899999999988999999999986554

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.37  E-value=0.0033  Score=46.01  Aligned_cols=49  Identities=22%  Similarity=0.346  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----cCccccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGI----------------WNWSEMPKYA----GLLRCGKSCRLRWMNYL   61 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~----------------~nW~~Ia~~~----~~~Rt~kqCr~Rw~n~L   61 (245)
                      ++..||++|.+.|+++|..|..                .-|..|+..+    ++.|+..||+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            3568999999999999998821                2499998865    32499999999998754

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.13  E-value=0.039  Score=58.77  Aligned_cols=98  Identities=13%  Similarity=0.289  Sum_probs=74.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccc-------ccccc----------------------------
Q 037956           15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCR-------LRWMN----------------------------   59 (245)
Q Consensus        15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr-------~Rw~n----------------------------   59 (245)
                      +.|+.-+=..++.++.+||..+-..||..|.+ ++...++       .||..                            
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~-k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEG-KTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcC-CCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45888888888999999998888899998876 6666554       11111                            


Q ss_pred             -------------cc--cCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhh------------CCCCCHHHHHHHHHHh
Q 037956           60 -------------YL--RPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASR------------LPGRTDNEIKNHWHSR  111 (245)
Q Consensus        60 -------------~L--~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~------------lpgRT~~~~Knrw~~~  111 (245)
                                   ..  .+.-++..||.|||..|+-++.+|| ++|..|-..            |..||+..|..|...+
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                         00  1223445799999999999999999 789999443            2479999999999998


Q ss_pred             hh
Q 037956          112 LS  113 (245)
Q Consensus       112 lk  113 (245)
                      |+
T Consensus       984 ~~  985 (1033)
T PLN03142        984 IR  985 (1033)
T ss_pred             HH
Confidence            86

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.42  E-value=0.0061  Score=52.02  Aligned_cols=49  Identities=27%  Similarity=0.453  Sum_probs=39.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC------CcccccccccCcccccccccccccccc
Q 037956           12 LRKGSWTPEEDRKLIAYIRRYGIW------NWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        12 lkkg~WT~EEDe~L~~~V~~~g~~------nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      .+...||.|||.+|...|..|+..      ....++..+.  |++-.|..||+.+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            466789999999999999988652      2455556666  999999999977766

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=93.98  E-value=0.029  Score=53.39  Aligned_cols=47  Identities=26%  Similarity=0.421  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHhhh-----CCC-CCHHHHHHHHHHhhhh
Q 037956           68 GNFTQEEDETIIKLHEQLGNRWSAIASR-----LPG-RTDNEIKNHWHSRLSK  114 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G~kW~~IA~~-----lpg-RT~~~~Knrw~~~lkk  114 (245)
                      ..||.+|-+-|+++++.|.-+|..||..     ++. ||-.++|+||+...++
T Consensus       131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~  183 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRK  183 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHH
Confidence            5699999999999999999999999987     555 9999999999988763

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.58  E-value=0.14  Score=41.22  Aligned_cols=50  Identities=18%  Similarity=0.448  Sum_probs=40.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----cHHHHhhhC------------CCCCHHHHHHHHHHhhh
Q 037956           64 DIRRGNFTQEEDETIIKLHEQLGN----RWSAIASRL------------PGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        64 ~i~k~~WT~EED~~Ll~lv~~~G~----kW~~IA~~l------------pgRT~~~~Knrw~~~lk  113 (245)
                      .-++..||.+||..|+-++.+||-    .|..|...+            ..||+..|..|...+|+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK  111 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence            445778999999999999999995    798886643            47999999999999886

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.73  E-value=0.31  Score=36.48  Aligned_cols=46  Identities=28%  Similarity=0.572  Sum_probs=35.3

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------cHHHHhhhC---CC--CCHHHHHHHHHHhhhh
Q 037956           69 NFTQEEDETIIKLHEQL---GN----------RWSAIASRL---PG--RTDNEIKNHWHSRLSK  114 (245)
Q Consensus        69 ~WT~EED~~Ll~lv~~~---G~----------kW~~IA~~l---pg--RT~~~~Knrw~~~lkk  114 (245)
                      .||+++++.|++++.+.   |+          .|..|+..|   +|  .+..+|+|||..+-+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998543   21          299999987   23  5789999999876553

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.92  E-value=0.24  Score=46.13  Aligned_cols=55  Identities=20%  Similarity=0.383  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCcHHHHhhhC----CCCCHHHHHHHHHHhhhhhhhhhhc
Q 037956           67 RGNFTQEEDETIIKLHEQL----------GNRWSAIASRL----PGRTDNEIKNHWHSRLSKKRLTKNN  121 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~----------G~kW~~IA~~l----pgRT~~~~Knrw~~~lkkk~~~k~~  121 (245)
                      ...|+.+|-..||++....          +.-|..||..+    .-||+.+||++|.++.++-+..+..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~  122 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAK  122 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence            3689999999999998643          23499999965    2499999999999988754444333

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=90.43  E-value=0.8  Score=30.73  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           72 QEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        72 ~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ++++..++.++...|-.|.+||..+ |.+...|+.+.+.-++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4677888999999999999999999 9999999998876554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=88.83  E-value=0.98  Score=44.12  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK  115 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkkk  115 (245)
                      ...||.||--++-+++..||+...+|-+.||.|+-..|...|+..-|.+
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~  235 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR  235 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence            4679999999999999999999999999999999999999888765543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=87.83  E-value=0.97  Score=43.29  Aligned_cols=47  Identities=23%  Similarity=0.310  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      .+|+.+|-++..++....|..+.-|+..||.|...|||-+|..--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            47999999999999999999999999999999999999999765543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=85.59  E-value=0.51  Score=37.99  Aligned_cols=34  Identities=29%  Similarity=0.588  Sum_probs=28.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 037956           11 SLRKGSWTPEEDRKLIAYIRRYGI---WNWSEMPKYA   44 (245)
Q Consensus        11 ~lkkg~WT~EEDe~L~~~V~~~g~---~nW~~Ia~~~   44 (245)
                      +.++..||.+||.-|+-.+.+||-   +.|..|-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            566788999999999999999998   8999987755

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=84.19  E-value=0.46  Score=45.41  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccc
Q 037956           15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMN   59 (245)
Q Consensus        15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n   59 (245)
                      -+|+.+|-+++.+++..+|. ++..|+.++|+ |..+|++.+|.+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~-R~RkqIKaKfi~  408 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGT-DFSLISSLFPN-RERKQIKAKFIK  408 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcc-hHHHHHHhcCc-hhHHHHHHHHHH
Confidence            47999999999999999998 99999999999 999999999876

>smart00595 MADF subfamily of SANT domain

Probab=80.88  E-value=2.7  Score=31.00  Aligned_cols=24  Identities=33%  Similarity=0.670  Sum_probs=21.1

Q ss_pred             HHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           89 WSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        89 W~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      |..||..| |-+..+|+.+|+++-.
T Consensus        30 W~~Ia~~l-~~~~~~~~~kw~~LR~   53 (89)
T smart00595       30 WEEIAEEL-GLSVEECKKRWKNLRD   53 (89)
T ss_pred             HHHHHHHH-CcCHHHHHHHHHHHHH
Confidence            99999999 6699999999987643

>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=80.21  E-value=5.1  Score=26.45  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           73 EEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      +++..++.++-..|-.+.+||..| |-+...|+.+.+..+++
T Consensus         7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k   47 (50)
T PF04545_consen    7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK   47 (50)
T ss_dssp             HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence            455666666666677899999999 99999999998887764

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		8e-26
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		1e-25
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		7e-25
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		6e-24
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		6e-24
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		6e-19
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-12
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		4e-11
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		5e-11
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		7e-10
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-06
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-04
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		5e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-04
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		5e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		4e-04

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
Query: 10  PSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGN 69
           P L KG WT EED+++I ++++YG   WS++ K+    R GK CR RW N+L P++++ +
Sbjct: 23  PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTS 81
Query: 70  FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           +T+EED  I + H++LGNRW+ IA  LPGRTDN +KNHW+S + +K
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 10  PSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGN 69
           P L KG WT EED+K+I  +++YG   W+ + K+    R GK CR RW N+L P++++ +
Sbjct: 3   PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSS 61
Query: 70  FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           +T+EED  I + H+ LGNRW+ IA  LPGRTDN +KNHW+S + +K
Sbjct: 62  WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 10  PSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGN 69
           P L KG WT EED+++I  +++YG   WS + K+    R GK CR RW N+L P++++ +
Sbjct: 54  PELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTS 112
Query: 70  FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           +T+EED  I + H++LGNRW+ IA  LPGRTDN IKNHW+S + +K
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 12  LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFT 71
           L KG WT EED+++I  +++YG   WS + K+    R GK CR RW N+L P++++ ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72  QEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           +EED  I + H++LGNRW+ IA  LPGRTDN IKNHW+S + +K
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 12  LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFT 71
           L KG WT EED+++I  +++YG   WS + K+    R GK CR RW N+L P++++ ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60
Query: 72  QEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           +EED  I + H++LGNRW+ IA  LPGRTDN IKNHW+S + +K
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 5/114 (4%)
Query: 14  KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL--RCGKSCRLRWMNYLRPDIRRGNFT 71
           KG +T  ED  +  Y++  G  NW   P+    L  R  K CR RW N+L P + +  +T
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72  QEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQV 125
            EEDETI + + +LG++WS IA  +PGRTDN IKN W+S +SK+  T +N +++
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 11  SLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL--RCGKSCRLRWMNYLRPDIRRG 68
           + +K  +TPEED  L   + ++G    S+    A     R  + CR RW NYL P I   
Sbjct: 8   AAKKQKFTPEEDEMLKRAVAQHG----SDWKMIAATFPNRNARQCRDRWKNYLAPSISHT 63
Query: 69  NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVPSV 128
            +T EED  +++  ++ G +W+ IA   PGRTD  IKN W        +T +N+  +P  
Sbjct: 64  PWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW--------VTISNKLGIPQT 115
Query: 129 TKSLQ 133
            + L+
Sbjct: 116 QQMLE 120

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 40/51 (78%)
Query: 65  IRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           +++ ++T+EED  I + H++LGNRW+ IA  LPGRTDN IKNHW+S + +K
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 41/52 (78%)
Query: 64  DIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           ++++ ++T+EED  + + H++LGNRW+ IA  LPGRTDN IKNHW+S + +K
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 14  KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQE 73
           K  +T EED KL   + RYG  +W  + +   + R  + CR RW NY+ P +R   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74  EDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHW 108
           ED  + + + + G +W+ I+  L  R+DN I+N W
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64
          L KG WT EED++LI  +++YG   WS + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 67  RGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113
           +G +T+EED+ +IKL ++ G  RWS IA  L GR   + +  WH+ L+
Sbjct: 3   KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64
          L KG WT EED+++I  +++YG   WS + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 67  RGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113
           +G +T+EED+ +IKL ++ G  RWS IA  L GR   + +  WH+ L+
Sbjct: 3   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64
          L KG WT EED+++I  +++YG   WS + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 67  RGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113
           +G +T+EED+ +I+L ++ G  RWS IA  L GR   + +  WH+ L+
Sbjct: 3   KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-66
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	2e-66
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	3e-66
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-57
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-56
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-36
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-07
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	6e-06
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-55
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-26
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	9e-09
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	5e-26
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	3e-06
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-19
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-10
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-15
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	8e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-09
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	4e-09
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	8e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-04
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-05
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	1e-06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-05
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	3e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	6e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	3e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  200 bits (511), Expect = 1e-66
 Identities = 51/104 (49%), Positives = 74/104 (71%), Gaps = 1/104 (0%)

Query: 12  LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFT 71
           L KG WT EED+++I  +++YG   WS + K+    R GK CR RW N+L P++++ ++T
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 72  QEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           +EED  I + H++LGNRW+ IA  LPGRTDN IKNHW+S + +K
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  200 bits (512), Expect = 2e-66
 Identities = 51/107 (47%), Positives = 77/107 (71%), Gaps = 1/107 (0%)

Query: 9   KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68
            P L KG WT EED+++I ++++YG   WS++ K+    R GK CR RW N+L P++++ 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKT 80

Query: 69  NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           ++T+EED  I + H++LGNRW+ IA  LPGRTDN +KNHW+S + +K
Sbjct: 81  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  200 bits (511), Expect = 3e-66
 Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 2/127 (1%)

Query: 14  KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQE 73
           KG +T  ED  +  Y++  G  NW  +  +    R  K CR RW N+L P + +  +T E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVPSVTKSLQ 133
           EDETI + + +LG++WS IA  +PGRTDN IKN W+S +  KR++ N+  +   +    +
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSI-SKRISTNSNHKEILLPDRSK 119

Query: 134 ETQTAAI 140
           + + A +
Sbjct: 120 KRKAADV 126

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  178 bits (453), Expect = 1e-57
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 8   EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67
              + +K  +TPEED  L   + ++G  +W  +       R  + CR RW NYL P I  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISH 62

Query: 68  GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQ 123
             +T EED  +++  ++ G +W+ IA   PGRTD  IKN W +  +K  + +  Q 
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQM 118

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  176 bits (449), Expect = 2e-56
 Identities = 52/107 (48%), Positives = 75/107 (70%), Gaps = 1/107 (0%)

Query: 9   KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68
            P L KG WT EED+++I  +++YG   WS + K+    R GK CR RW N+L P++++ 
Sbjct: 53  NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKT 111

Query: 69  NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
           ++T+EED  I + H++LGNRW+ IA  LPGRTDN IKNHW+S + +K
Sbjct: 112 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  124 bits (313), Expect = 4e-36
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 12  LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFT 71
           L K  WT EED KL   + + G  +W  +  Y    R    C+ RW   L P++ +G +T
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWT 62

Query: 72  QEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRL 112
           +EED+ +IKL ++ G  RWS IA  L GR   + +  WH+ L
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 10  PSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL--RCGKSCRLRWMNYLRPDI 65
           P ++K SWT EEDR +    +R G   W+E+   A LL  R   + +  W + +R  +
Sbjct: 106 PEVKKTSWTEEEDRIIYQAHKRLGN-RWAEI---AKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 65  IRRGNFTQEEDETIIKLHEQLGNR-WSAIASRLPGRTDNEIKNHWHSRLS 113
           + +  +T+EEDE + KL EQ G   W  IA+ LP RTD + ++ W   L+
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 53

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  172 bits (438), Expect = 2e-55
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 14  KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQE 73
           K  +T EED KL   + RYG  +W  + +     R  + CR RW NY+ P +R   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNN 121
           ED  + + + + G +W+ I+  L  R+DN I+N W      +   + +
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 96.2 bits (240), Expect = 3e-26
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 6  GSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDI 65
          GS   S + G W   ED  L A + +YG   WS +       +  K C+ RW  +L P I
Sbjct: 1  GSSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSI 59

Query: 66 RRGNFTQEE 74
          ++  ++   
Sbjct: 60 KKTEWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 50.0 bits (120), Expect = 9e-09
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 62  RPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113
               + G +   EDE +     + G N+WS IAS L  ++  + K  W+  L 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 94.9 bits (237), Expect = 5e-26
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64
          L KG WT EED++LI  +++YG   WS + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 65  IRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRT 100
           + +G +T+EED+ +IKL ++ G  RWS IA  L GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 78.8 bits (195), Expect = 1e-19
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64
          L K  WT EED KL   + + G  +W  +  Y    R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 65  IRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113
           + +  +T+EEDE + KL EQ G + W  IA+ LP RTD + ++ W   L+
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 66.1 bits (162), Expect = 6e-15
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 10 PSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63
           S  K  WT EED +L A +R++G  +W  +  +    R  + C+ RW+  L  
Sbjct: 4  GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSG 56

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 52.6 bits (127), Expect = 8e-10
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 62  RPDIRRGNFTQEEDETIIKLHEQLGNR-WSAIASRLPGRTDNEIKNHWHSRLSKKR 116
                +  +T EEDE +  L  Q G + W  +AS  P RTD + +  W   LS   
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 6  GSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDI 65
          GS   S +K  W+ EE+ KL+   +      W  +    G  R    C   +   L    
Sbjct: 1  GSSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIG--RTAAQCLEHYEFLLDKAA 57

Query: 66 RRGN 69
          +R +
Sbjct: 58 QRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 51.4 bits (123), Expect = 3e-09
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 65  IRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKK 115
            ++  +++EE+E ++ L + +  +W  IA  + GRT  +   H+   L K 
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKA 56

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 50.4 bits (121), Expect = 4e-09
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL-RCGKSCRLRWMNYLR 62
          ++ +W  EED+ L + +R+YG  NWS++  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 66  RRGNFTQEEDETIIKLHEQLGN-RWSAIASRLP--GRTDNEIKNHWHSRLSKKR 116
           +R  +  EED+ +     + G   WS I        RT   +K+ W + + K +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT-MKKLK 53

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 5  GGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
          G S      +  W  +E+  LI      G+ NW+++  Y G  R  + CR  ++  
Sbjct: 1  GSSGSSGFDEN-WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 6  GSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61
          GS   S    SWT +E+  L+  +   G  NW ++       +  + C   +M Y 
Sbjct: 1  GSSGSS-GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 66  RRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113
              ++T +E+  +++     G   W  +A+++  +T  E + H+    S
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 13  RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL---RCGKSCRLRWMNYLR-----PD 64
            +  ++  E   L+  + + G   W ++   A      R     + +W   +      P 
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 65  IRRGNFTQEE-DETIIKLHEQLGNRWSAIASR 95
            RRG    +E    ++  H     +      +
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 44.3 bits (105), Expect = 8e-07
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 7  SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL-RCGKSCRLRWMNYLRPDI 65
          S     +K  WT EE   + A +++YG  NW+ + K    + R     + RW    R  +
Sbjct: 4  STTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 66  RRGNFTQEEDETIIKLHEQLGN-RWSAIASRLP--GRTDNEIKNHWH 109
           ++  +T EE E +    ++ G   W+AI+   P   RT   IK+ W 
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR 56

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL-RCGKSCRLRWMNYLRPDI 65
          +K  WT EE   + A +++YG  NW+ + K    + R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 66  RRGNFTQEEDETIIKLHEQLGN-RWSAIASRLP--GRTDNEIKNHWH 109
           ++  +T EE E +    ++ G   W+AI+   P   RT   IK+ W 
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR 47

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 17 WTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL---RCGKSCRLRWMNYLR-----PDIRRG 68
          ++  E   L+  +   G   W ++   A      R     + +W   +      P  RRG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 69 N-FTQEEDETIIKLHEQLGNR 88
              Q+  + ++  H     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 7  SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEM-PKYAGLLRCGKSCRLRWMNYLRPDI 65
           +  + ++ +W  EED+ L + +R+YG  NWS++   Y    R     + RW    +  +
Sbjct: 3  EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

Query: 66 RRGN 69
             +
Sbjct: 63 ISSD 66

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 66  RRGNFTQEEDETIIKLHEQLGN-RWSAIASRLP--GRTDNEIKNHWHSRLSKKRLTKNN 121
           +R  +  EED+ +     + G   WS I        RT   +K+ W + + K +L  ++
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT-MKKLKLISSD 66

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 9/88 (10%)

Query: 13  RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL---RCGKSCRLRWMNYLR-----PD 64
            +  +T  E   L+  +   G   W ++   A      R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 65  IRRGN-FTQEEDETIIKLHEQLGNRWSA 91
            RRG    QE  + ++          S 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 54  RLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS 113
                +  R ++    +T+EE  T  K   + G  WSAIA  +  +T ++ KN + +   
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFN--Y 60

Query: 114 KKRL 117
           KKR 
Sbjct: 61  KKRQ 64

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 22/142 (15%)

Query: 10  PSLRKGSWTPEEDRKLIAYIR-----RYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64
           PS  K S+T EED  ++  +R     R     + E+  Y      G S R R+  YL   
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKR 62

Query: 65  IRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSR-------LSKKRL 117
           +       +  + +    +  GN                IK  + +          KK+ 
Sbjct: 63  LEYVYEVDKFGKLV---RDDDGNLIKT------KVLPPSIKRKFSADEDYTLAIAVKKQF 113

Query: 118 TKNNQQQVPSVTKSLQETQTAA 139
            ++  Q  P   +SL   +   
Sbjct: 114 YRDLFQIDPDTGRSLITDEDTP 135

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 67  RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHW 108
            G +T EE E + +L  + GN W+ I + L GR+ + +K+  
Sbjct: 23  VGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68
           G +TPEE  KL     ++G  +W+ +    G  R   S + R    ++     G
Sbjct: 23 VGKYTPEEIEKLKELRIKHGN-DWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 62  RPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNN 121
                   +T EE E   +   + G RW+ I+  +  RT  ++K++       K   K  
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV--KCG 61

Query: 122 QQQVPSVTKS 131
             +     K+
Sbjct: 62  LDKETPNQKT 71

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 9/87 (10%)

Query: 13  RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL---RCGKSCRLRWMNYLR-----PD 64
            +  ++  E   L+  +   G   W ++   A      R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 65  IRRGNFT-QEEDETIIKLHEQLGNRWS 90
            RRG    Q+  + ++  H     +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 62  RPDIRRGNFTQEEDET----IIKLHEQLGNRWSAIASRLPGRTDNEIKNHW 108
           R       +TQ + +     + +      + W  IA  +P ++  +    +
Sbjct: 13  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 8/38 (21%), Positives = 20/38 (52%)

Query: 71  TQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHW 108
           T++E   +++  E   + W+ ++  +  RT +E   H+
Sbjct: 22  TEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 39/268 (14%), Positives = 76/268 (28%), Gaps = 101/268 (37%)

Query: 45  GLLRCGKSC-----------------RLRWMNYLRPDIRRGNFTQEED--ETIIKLHEQL 85
           G+L  GK+                  ++ W+N         N    E   E + KL  Q+
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQKLLYQI 209

Query: 86  GNRWSA---IASRLPGRTD---NEIKNHWHSRLSKKRL---------------------- 117
              W++    +S +  R      E++    S+  +  L                      
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 118 --TKN----------NQQQVPSV--TKSLQETQTAAIFEFDEANKQNQN----PPEILIA 159
             T+               +     + +L   +  ++         +      P E+L  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLPREVLTT 325

Query: 160 DP--IPIIPNNSREPPKVLTGCTSPSPQLSADNCSSSTSYVSANYEEIYKIQSSKVSNYD 217
           +P  + II  + R+        T        DN      +   N +++  I  S ++  +
Sbjct: 326 NPRRLSIIAESIRDGL-----ATW-------DN------WKHVNCDKLTTIIESSLNVLE 367

Query: 218 HPSE---NLDELHNFWEQ-PFTVDTLCM 241
            P+E     D L  F          L +
Sbjct: 368 -PAEYRKMFDRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.87
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.84
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.79
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.77
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.73
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.73
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.72
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.7
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.7
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.7
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.7
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.69
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.66
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.65
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.64
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.63
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.63
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.63
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.63
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.61
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.6
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.6
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.59
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.59
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.59
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.35
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.57
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.55
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.55
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.55
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.51
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.47
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.46
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.45
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.44
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.42
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.4
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.39
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.1
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.37
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.37
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.36
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.33
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.32
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.32
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.31
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.3
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.28
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.24
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	99.08
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.08
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.0
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.9
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.86
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.79
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.79
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.68
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.62
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.56
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.54
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.52
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.35
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.32
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.29
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.22
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.42
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.05
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.04
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.03
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.86
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.86
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.85
2crg_A	70	Metastasis associated protein MTA3; transcription	97.76
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.52
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.16
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.16
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.99
2crg_A	70	Metastasis associated protein MTA3; transcription	96.95
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.9
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.9
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.82
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.39
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.32
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.11
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.95
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.01
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.84
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.3
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	89.23
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	80.97

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=9.6e-36  Score=231.47  Aligned_cols=103  Identities=49%  Similarity=0.939  Sum_probs=99.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHH
Q 037956           11 SLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWS   90 (245)
Q Consensus        11 ~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~   90 (245)
                      .+++|+||+|||++|+.+|..||.++|..||++|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            478999999999999999999998899999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           91 AIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        91 ~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      .||++|||||+++|++||+.++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999984

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=1.2e-35  Score=238.77  Aligned_cols=112  Identities=45%  Similarity=0.876  Sum_probs=103.0

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHH
Q 037956            2 VKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKL   81 (245)
Q Consensus         2 ~R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~l   81 (245)
                      .|+...++|++++|+||+|||++|+.+|..||.++|..||.+|++ |+++||++||.++|+|.+++++||+|||++|+++
T Consensus        15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~   93 (128)
T 1h8a_C           15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA   93 (128)
T ss_dssp             -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred             HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence            366778999999999999999999999999998899999999998 9999999999999999999999999999999999


Q ss_pred             HHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           82 HEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        82 v~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      |.+||++|..||++|||||+++|++||+.++++
T Consensus        94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~  126 (128)
T 1h8a_C           94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR  126 (128)
T ss_dssp             HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred             HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999984

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=2.4e-35  Score=230.61  Aligned_cols=100  Identities=33%  Similarity=0.626  Sum_probs=97.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHh
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIA   93 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA   93 (245)
                      ||+||+|||++|+.+|..||..+|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            689999999999999999998899999999998 9999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHhhhh
Q 037956           94 SRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        94 ~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      ++|||||+++|++||+.++++
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999998874

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=9.1e-35  Score=234.86  Aligned_cols=100  Identities=44%  Similarity=0.806  Sum_probs=98.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHh
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIA   93 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA   93 (245)
                      ||+||+|||++|+.+|..||.++|..||.+|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            799999999999999999998899999999998 9999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHhhhh
Q 037956           94 SRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        94 ~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      ++|||||+++|++||+.+|++
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~  101 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISK  101 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGG
T ss_pred             HHcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999984

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=7.2e-35  Score=234.14  Aligned_cols=110  Identities=34%  Similarity=0.619  Sum_probs=102.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 037956            8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN   87 (245)
Q Consensus         8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~   87 (245)
                      .+++.+||+||+|||++|+.+|..||. +|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467889999999999999999999998 99999999998 9999999999999999999999999999999999999999


Q ss_pred             cHHHHhhhCCCCCHHHHHHHHHHhhhhhhhhh
Q 037956           88 RWSAIASRLPGRTDNEIKNHWHSRLSKKRLTK  119 (245)
Q Consensus        88 kW~~IA~~lpgRT~~~~Knrw~~~lkkk~~~k  119 (245)
                      +|..||++|||||+++|++||+.++++..+..
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~p~  114 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQ  114 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHTTC--
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999998654443

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.98  E-value=2.7e-33  Score=232.64  Aligned_cols=110  Identities=46%  Similarity=0.876  Sum_probs=105.7

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHH
Q 037956            4 AGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHE   83 (245)
Q Consensus         4 ~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~   83 (245)
                      +...++|++++|+||+|||++|+.+|..||..+|..||.+|++ |+++||+.||.++|+|.+++++||+|||.+|++++.
T Consensus        48 w~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~  126 (159)
T 1h89_C           48 WQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK  126 (159)
T ss_dssp             HHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHH
T ss_pred             HHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHH
Confidence            3456899999999999999999999999998789999999998 999999999999999999999999999999999999


Q ss_pred             HhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           84 QLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        84 ~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      +||++|..||++|||||+++|||||+.++++
T Consensus       127 ~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~  157 (159)
T 1h89_C          127 RLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR  157 (159)
T ss_dssp             HHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred             HHCCCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999984

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=4.6e-31  Score=219.12  Aligned_cols=102  Identities=37%  Similarity=0.764  Sum_probs=60.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-cH
Q 037956           11 SLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN-RW   89 (245)
Q Consensus        11 ~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~-kW   89 (245)
                      ++++++||+|||++|+++|..||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|..||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            467899999999999999999998899999999998 9999999999999999999999999999999999999996 69


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           90 SAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        90 ~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ..||.+|||||+.+|++||+++|.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~  105 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLN  105 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhC
Confidence            999999999999999999999986

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1.5e-23  Score=152.04  Aligned_cols=68  Identities=28%  Similarity=0.616  Sum_probs=65.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHH
Q 037956            7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEED   75 (245)
Q Consensus         7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED   75 (245)
                      +..|++++|+||+|||++|+.+|.+||.++|..||.+|++ |+++|||+||.++|+|.+++++||+|||
T Consensus         2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4578999999999999999999999998899999999998 9999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.84  E-value=1.6e-21  Score=156.36  Aligned_cols=73  Identities=34%  Similarity=0.747  Sum_probs=50.5

Q ss_pred             ccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           40 MPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        40 Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ||+.|++ |+++||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.+|++||+.+|.
T Consensus         1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~   74 (128)
T 1h8a_C            1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN   74 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred             CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence            7889998 9999999999999999999999999999999999999996 69999999999999999999999886

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.79  E-value=6.1e-20  Score=160.95  Aligned_cols=106  Identities=24%  Similarity=0.367  Sum_probs=92.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCC-----CcccccccccCccccccccccccccccCCCC-----------------
Q 037956            9 KPSLRKGSWTPEEDRKLIAYIRRYGIW-----NWSEMPKYAGLLRCGKSCRLRWMNYLRPDIR-----------------   66 (245)
Q Consensus         9 kp~lkkg~WT~EEDe~L~~~V~~~g~~-----nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~-----------------   66 (245)
                      .+.++|++||+|||++|+++|.+||..     .|..||++|++ ||+.|||.||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            356789999999999999999999764     29999999998 9999999999999999996                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 037956           67 ------------RGNFTQEEDETIIKLHEQ-L--------------------------------GN--------------   87 (245)
Q Consensus        67 ------------k~~WT~EED~~Ll~lv~~-~--------------------------------G~--------------   87 (245)
                                  +..||.+||..|...+.+ |                                |.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999999876 1                                21              


Q ss_pred             -----------cHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 037956           88 -----------RWSAIASRLPGRTDNEIKNHWHSRLSKK  115 (245)
Q Consensus        88 -----------kW~~IA~~lpgRT~~~~Knrw~~~lkkk  115 (245)
                                 .|..||+.+|+||.+++|+||..+|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       6999999999999999999999999743

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.77  E-value=3.3e-19  Score=130.74  Aligned_cols=59  Identities=24%  Similarity=0.392  Sum_probs=47.4

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhh
Q 037956           53 CRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRL  112 (245)
Q Consensus        53 Cr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~l  112 (245)
                      ..-||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999 999999999999654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.73  E-value=1.1e-18  Score=139.29  Aligned_cols=83  Identities=16%  Similarity=0.284  Sum_probs=78.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----cCcccccccccccccccc-----CCCCCC-CCCHHHHHH
Q 037956            8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYA----GLLRCGKSCRLRWMNYLR-----PDIRRG-NFTQEEDET   77 (245)
Q Consensus         8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~----~~~Rt~kqCr~Rw~n~L~-----p~i~k~-~WT~EED~~   77 (245)
                      ..+..++++||+|||+.|+.+|.+||.++|..|++.+    ++ |++.||++||.++++     |.++++ +|+++|+..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            5678899999999999999999999999999999985    66 999999999999998     999999 999999999


Q ss_pred             HHHHHHHhCCcHHH
Q 037956           78 IIKLHEQLGNRWSA   91 (245)
Q Consensus        78 Ll~lv~~~G~kW~~   91 (245)
                      |+.++..||++|.+
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999976

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=9.3e-19  Score=123.01  Aligned_cols=57  Identities=30%  Similarity=0.547  Sum_probs=54.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCC
Q 037956            9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIR   66 (245)
Q Consensus         9 kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~   66 (245)
                      .|++++++||+|||++|+++|..||..+|..||++|++ |++.||+.||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence            58899999999999999999999997799999999998 9999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.72  E-value=1.3e-18  Score=118.84  Aligned_cols=52  Identities=48%  Similarity=0.896  Sum_probs=49.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC
Q 037956           12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD   64 (245)
Q Consensus        12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~   64 (245)
                      +++|+||+|||++|+++|..||..+|..||+.|++ |+++||+.||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            57899999999999999999998889999999998 99999999999999984

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.70  E-value=1.8e-17  Score=120.70  Aligned_cols=54  Identities=20%  Similarity=0.235  Sum_probs=52.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           61 LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        61 L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      ++|.+++++||+|||++|+++|.+||++|..||.+|||||+++||+||+.+|++
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999984

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.70  E-value=4.7e-18  Score=135.82  Aligned_cols=79  Identities=16%  Similarity=0.250  Sum_probs=72.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----cCccccccccccccccc-----cCCCCCCCCCHHH-HHHH
Q 037956            9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYA----GLLRCGKSCRLRWMNYL-----RPDIRRGNFTQEE-DETI   78 (245)
Q Consensus         9 kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~----~~~Rt~kqCr~Rw~n~L-----~p~i~k~~WT~EE-D~~L   78 (245)
                      ....++++||+|||+.|+++|++||.++|..|++.+    ++ |++.||++||.|++     +|.++++.|+++| +..|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            345678999999999999999999999999999974    55 99999999999999     8999999999999 8999


Q ss_pred             HHHHHHhCCc
Q 037956           79 IKLHEQLGNR   88 (245)
Q Consensus        79 l~lv~~~G~k   88 (245)
                      +.++..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999974

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=2e-17  Score=118.38  Aligned_cols=55  Identities=24%  Similarity=0.466  Sum_probs=52.7

Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           59 NYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        59 n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      .+|+|.+++++||+|||++|+++|..||++|..||+ |+|||+.||++||+.+|+.
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~   55 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDK   55 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhCh
Confidence            379999999999999999999999999999999999 8899999999999999983

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.70  E-value=3.1e-18  Score=123.71  Aligned_cols=63  Identities=22%  Similarity=0.379  Sum_probs=58.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc--CccccccccccccccccCCCCCCCCC
Q 037956            8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG--LLRCGKSCRLRWMNYLRPDIRRGNFT   71 (245)
Q Consensus         8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~--~~Rt~kqCr~Rw~n~L~p~i~k~~WT   71 (245)
                      .+|..++++||+|||++|+.+|..||.++|..||.+|+  + |++.||++||.++|+|.+.++...
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999999999999999999889999999999  7 999999999999999999988754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.69  E-value=2.5e-18  Score=117.43  Aligned_cols=52  Identities=35%  Similarity=0.695  Sum_probs=48.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC
Q 037956           12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD   64 (245)
Q Consensus        12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~   64 (245)
                      +++++||+|||++|+++|..||.++|..||++|++ |++.||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence            47899999999999999999998899999999998 99999999999999985

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=1.3e-16  Score=111.98  Aligned_cols=52  Identities=35%  Similarity=0.598  Sum_probs=49.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcC
Confidence            5789999999999999999999999 699999999999999999999999987

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.65  E-value=2.2e-16  Score=107.69  Aligned_cols=49  Identities=41%  Similarity=0.727  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           65 IRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        65 i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998 99999999999999999999999886

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.64  E-value=2.4e-17  Score=117.80  Aligned_cols=55  Identities=27%  Similarity=0.434  Sum_probs=49.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc--CccccccccccccccccCCCC
Q 037956           11 SLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG--LLRCGKSCRLRWMNYLRPDIR   66 (245)
Q Consensus        11 ~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~--~~Rt~kqCr~Rw~n~L~p~i~   66 (245)
                      ..+|++||+|||++|+++|.+||.++|..||+.++  + |++.||++||.++++|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence            35789999999999999999999989999999865  5 9999999999999998764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.5e-17  Score=119.06  Aligned_cols=61  Identities=23%  Similarity=0.382  Sum_probs=56.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCC
Q 037956            6 GSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGN   69 (245)
Q Consensus         6 ~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~   69 (245)
                      ++++|.+++++||+|||++|+.+|..||. +|..||+ +++ |+++||+.||.++|+|.++++.
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence            36899999999999999999999999998 9999999 666 9999999999999999877653

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.63  E-value=4.7e-17  Score=114.57  Aligned_cols=55  Identities=22%  Similarity=0.472  Sum_probs=51.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC
Q 037956            9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD   64 (245)
Q Consensus         9 kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~   64 (245)
                      -|.+.+++||+|||++|+++|..||.++|..||++|++ |+++||+.||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence            36789999999999999999999997799999999998 99999999999999864

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.63  E-value=4.3e-16  Score=106.30  Aligned_cols=49  Identities=41%  Similarity=0.853  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           65 IRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        65 i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||.++|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999997 69999999999999999999999885

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.63  E-value=4.4e-16  Score=106.82  Aligned_cols=49  Identities=24%  Similarity=0.426  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLG-NRWSAIASRLP--GRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~~~Knrw~~~lkk  114 (245)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999999874

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.61  E-value=7.7e-16  Score=108.29  Aligned_cols=52  Identities=17%  Similarity=0.378  Sum_probs=49.2

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      .+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+.+|.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            4678899999999999999999999 799999999999999999999999886

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.60  E-value=1.1e-16  Score=109.82  Aligned_cols=49  Identities=29%  Similarity=0.501  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccc--Ccccccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG--LLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~--~~Rt~kqCr~Rw~n~L~   62 (245)
                      ++++||+|||++|+.+|..||.++|..||..++  + |++.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence            579999999999999999999889999999999  7 999999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.60  E-value=2e-15  Score=108.91  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=51.1

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhh
Q 037956           60 YLRPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLP--GRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        60 ~L~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~~~Knrw~~~lkk  114 (245)
                      ...+..++++||+|||++|+++|.+|| ++|..||.+|+  |||+.||++||+++|+.
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence            456778899999999999999999999 69999999999  99999999999999983

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.8e-15  Score=109.38  Aligned_cols=52  Identities=29%  Similarity=0.471  Sum_probs=49.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      .|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD   56 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence            4778999999999999999999999 799999999999999999999999997

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.59  E-value=2.1e-16  Score=110.62  Aligned_cols=52  Identities=25%  Similarity=0.540  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc-Cccccccccccccccc
Q 037956            9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG-LLRCGKSCRLRWMNYL   61 (245)
Q Consensus         9 kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~-~~Rt~kqCr~Rw~n~L   61 (245)
                      ...+.+++||+|||++|+++|.+||.++|..||++|+ + |+++|||.||.+++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~-Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNA-RTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSS-CCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCC-CCHHHHHHHHHHHc
Confidence            3456789999999999999999999889999999999 6 99999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.3e-16  Score=116.72  Aligned_cols=61  Identities=23%  Similarity=0.339  Sum_probs=56.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCcccccccccCccccccccccccccccCCCCCCC
Q 037956            8 EKPSLRKGSWTPEEDRKLIAYIRRYGI-----WNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGN   69 (245)
Q Consensus         8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~-----~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~   69 (245)
                      -+|++.+++||+|||++|+++|..||.     .+|..||++|++ |+++||+.||++||.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999996     689999999998 9999999999999998877663

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.35  E-value=1.7e-16  Score=120.21  Aligned_cols=60  Identities=27%  Similarity=0.303  Sum_probs=55.2

Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhhhhhh
Q 037956           59 NYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLT  118 (245)
Q Consensus        59 n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkkk~~~  118 (245)
                      ..+.|.+++++||.|||++|+++|.+||++|..||.+|+|||+++|++||+.+|++..+.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~   67 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD   67 (89)
Confidence            356789999999999999999999999999999999999999999999999999865443

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.57  E-value=3e-16  Score=114.19  Aligned_cols=59  Identities=20%  Similarity=0.340  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCC
Q 037956            7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR   67 (245)
Q Consensus         7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k   67 (245)
                      +..|.+++++||+|||++|+.+|..||. +|..||++|++ |++.||+.||.++|.+.++.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence            5689999999999999999999999998 99999999998 99999999999999877665

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=4.1e-15  Score=108.69  Aligned_cols=53  Identities=23%  Similarity=0.320  Sum_probs=50.1

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC------CcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLG------NRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G------~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      +|.+.+++||+|||++|+++|.+||      ++|..||.+|+|||+.||++||+.+|.+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            5788999999999999999999999      7899999999999999999999988873

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.55  E-value=7.5e-15  Score=102.65  Aligned_cols=50  Identities=26%  Similarity=0.452  Sum_probs=46.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC-CCCHHHHHHHHHHhh
Q 037956           63 PDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLP-GRTDNEIKNHWHSRL  112 (245)
Q Consensus        63 p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~~~Knrw~~~l  112 (245)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||..++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456788999999999999999999 89999999999 999999999998765

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.55  E-value=7.9e-15  Score=104.70  Aligned_cols=49  Identities=29%  Similarity=0.531  Sum_probs=45.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC--CCCHHHHHHHHHHhhh
Q 037956           65 IRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLP--GRTDNEIKNHWHSRLS  113 (245)
Q Consensus        65 i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~~~Knrw~~~lk  113 (245)
                      .++++||+|||++|+++|.+|| ++|..||+.++  |||+.||++||+++++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999999 58999999865  9999999999999886

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.51  E-value=3.3e-15  Score=109.40  Aligned_cols=61  Identities=20%  Similarity=0.177  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCC
Q 037956            2 VKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIR   66 (245)
Q Consensus         2 ~R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~   66 (245)
                      .|.-..++|++++|+||+|||++|+++|..||. +|..||+.| + |++.||+.||.. |....+
T Consensus        11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             --------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCS
T ss_pred             cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHcc
Confidence            366678999999999999999999999999998 699999999 6 999999999984 544433

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.47  E-value=3e-15  Score=120.32  Aligned_cols=86  Identities=21%  Similarity=0.367  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 037956            5 GGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQ   84 (245)
Q Consensus         5 ~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~   84 (245)
                      ...+.|++++|+||+|||++|+.+|..||. +|..||++|++ |++.||+.||.++|++.+..++|+.+-    +.....
T Consensus        45 ~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~  118 (131)
T 3zqc_A           45 FNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPG-RTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRS  118 (131)
T ss_dssp             HHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTT-CCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC
T ss_pred             hhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhh
Confidence            346789999999999999999999999997 99999999998 999999999999999999999887653    111122


Q ss_pred             hCCcHHHHhhhC
Q 037956           85 LGNRWSAIASRL   96 (245)
Q Consensus        85 ~G~kW~~IA~~l   96 (245)
                      .+.+|..|++.|
T Consensus       119 kk~~~~~i~k~~  130 (131)
T 3zqc_A          119 KKRKAADVPKKL  130 (131)
T ss_dssp             ------------
T ss_pred             hhhhhhhcchhc
Confidence            345677777665

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.46  E-value=7.1e-14  Score=102.31  Aligned_cols=51  Identities=16%  Similarity=0.290  Sum_probs=47.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           63 PDIRRGNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        63 p~i~k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +.+.+++||.+||.+|++++..||    ++|.+||++|||||.++|++||+.++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999    689999999999999999999998875

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.45  E-value=2.3e-14  Score=111.71  Aligned_cols=78  Identities=17%  Similarity=0.308  Sum_probs=67.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----cCccccccccccccccc-----cCCCCCCCCCHHHHHH-
Q 037956            8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYA----GLLRCGKSCRLRWMNYL-----RPDIRRGNFTQEEDET-   77 (245)
Q Consensus         8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~----~~~Rt~kqCr~Rw~n~L-----~p~i~k~~WT~EED~~-   77 (245)
                      .++..++++||+|||+.|+.+|++||.++|..|++.+    ++ ||+.+|++||.+++     +|.++++.-+++|-.. 
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            4567889999999999999999999999999999965    55 99999999999998     6999999888888765 


Q ss_pred             HHHHHHHhC
Q 037956           78 IIKLHEQLG   86 (245)
Q Consensus        78 Ll~lv~~~G   86 (245)
                      +++|+..+|
T Consensus        86 v~~~~~~~~   94 (105)
T 2aje_A           86 VLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777655

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.44  E-value=4.5e-14  Score=105.78  Aligned_cols=69  Identities=19%  Similarity=0.363  Sum_probs=60.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc----ccCccccccccccccccc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 037956           15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKY----AGLLRCGKSCRLRWMNYL-----RPDIRRG-NFTQEEDETIIKLHEQ   84 (245)
Q Consensus        15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~----~~~~Rt~kqCr~Rw~n~L-----~p~i~k~-~WT~EED~~Ll~lv~~   84 (245)
                      ++||+|||+.|+.+|++||.++|..|++.    +++ ||+.||++||.|++     .|.++++ +...+....++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999995    777 99999999999988     6776665 6777777888888754

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.42  E-value=5.3e-14  Score=104.41  Aligned_cols=53  Identities=21%  Similarity=0.437  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccc
Q 037956            7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL   61 (245)
Q Consensus         7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L   61 (245)
                      +.+....+++||+|||++|+++|..|| .+|..||++|++ |++.||+.||.++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~~   63 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRLP   63 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTSC
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence            455677789999999999999999999 699999999998 99999999999983

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.40  E-value=4e-13  Score=95.04  Aligned_cols=49  Identities=27%  Similarity=0.499  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcHHHHh---hhCCCCCHHHHHHHHHHhhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLGNRWSAIA---SRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G~kW~~IA---~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      ++.+||+|||+.|+++|++||.+|..|+   .+|+|||+.+||+||++++++
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            6789999999999999999999999999   577999999999999998873

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.39  E-value=2.6e-13  Score=100.63  Aligned_cols=49  Identities=16%  Similarity=0.301  Sum_probs=45.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHh
Q 037956           63 PDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSR  111 (245)
Q Consensus        63 p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~  111 (245)
                      ....+++||+|||++|+++|.+||++|..||++|+|||+.||++||..+
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            3456889999999999999999999999999999999999999999876

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.10  E-value=2.8e-14  Score=107.96  Aligned_cols=56  Identities=25%  Similarity=0.431  Sum_probs=52.1

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccC
Q 037956            6 GSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP   63 (245)
Q Consensus         6 ~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p   63 (245)
                      ....|++.+|+||+|||++|+.+|..||. +|..||.+|++ |++.||+.||.++|..
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR   63 (89)
Confidence            34678999999999999999999999998 89999999998 9999999999998873

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.37  E-value=8.2e-13  Score=98.91  Aligned_cols=50  Identities=26%  Similarity=0.551  Sum_probs=45.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhhhhh
Q 037956           68 GNFTQEEDETIIKLHEQLGN-RWSAIASR----LPGRTDNEIKNHWHSRLSKKRL  117 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~~~Knrw~~~lkkk~~  117 (245)
                      .+||.|||+.|+++|++||. +|+.|++.    |+|||+++||+||++++++..+
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~   55 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence            47999999999999999997 99999996    8999999999999999985544

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.37  E-value=7.5e-13  Score=102.09  Aligned_cols=50  Identities=40%  Similarity=0.856  Sum_probs=47.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           64 DIRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        64 ~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ++++++||+|||++|+++|..||. +|..||..|||||+.||++||..+|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~   51 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   51 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence            468999999999999999999996 79999999999999999999999886

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.36  E-value=1.1e-12  Score=104.79  Aligned_cols=52  Identities=29%  Similarity=0.609  Sum_probs=48.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      .+..++++||+|||++|+++|..||.+|..||..|+||++.||+.||.++|.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~   57 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA   57 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence            4567899999999999999999999999999999999999999999999886

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.33  E-value=1.7e-13  Score=100.22  Aligned_cols=57  Identities=14%  Similarity=0.323  Sum_probs=50.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccCcccccccccccccccc
Q 037956            5 GGSEKPSLRKGSWTPEEDRKLIAYIRRYGI---WNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus         5 ~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~---~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      +..+++...+++||++||++|..+|..||.   .+|..||++||+ |+++||+.||.+++.
T Consensus         9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A            9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            345678889999999999999999999993   489999999998 999999999998764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.32  E-value=1.8e-12  Score=103.37  Aligned_cols=57  Identities=26%  Similarity=0.503  Sum_probs=51.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhhhhh
Q 037956           61 LRPDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASR----LPGRTDNEIKNHWHSRLSKKRL  117 (245)
Q Consensus        61 L~p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~~~Knrw~~~lkkk~~  117 (245)
                      +.+..++++||.|||+.|+++|.+||. +|+.|+..    |+|||+++||+||+++++...+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~   72 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   72 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhcc
Confidence            556788999999999999999999997 99999998    4999999999999999985433

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.32  E-value=2.5e-12  Score=100.24  Aligned_cols=55  Identities=24%  Similarity=0.451  Sum_probs=48.8

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhC----CCCCHHHHHHHHHHhhhhhh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASRL----PGRTDNEIKNHWHSRLSKKR  116 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~l----pgRT~~~~Knrw~~~lkkk~  116 (245)
                      .+..++++||.|||+.|+++|.+||. +|+.|+..+    +|||+.+||+||++++++..
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34567899999999999999999996 999999965    89999999999999997543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.31  E-value=1.4e-12  Score=114.34  Aligned_cols=52  Identities=33%  Similarity=0.562  Sum_probs=46.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------HHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           63 PDIRRGNFTQEEDETIIKLHEQLGNR------WSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        63 p~i~k~~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      +.+++++||+|||++|+++|++||++      |..||++|||||+++||+||+.+|++
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~   61 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK   61 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            45788999999999999999999975      99999999999999999999999984

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.30  E-value=4.7e-12  Score=96.64  Aligned_cols=53  Identities=19%  Similarity=0.433  Sum_probs=47.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHhhhhhhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWHSRLSKKRLT  118 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~~~Knrw~~~lkkk~~~  118 (245)
                      .+++||.|||++|++++..||    ++|.+||++|||||+++|++||..++...+..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~i   63 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI   63 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            467999999999999999996    68999999999999999999999988754443

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.28  E-value=4.2e-12  Score=98.51  Aligned_cols=47  Identities=23%  Similarity=0.514  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYIN   48 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence            578999999999999999996 89999999999999999999999886

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.24  E-value=1e-11  Score=99.14  Aligned_cols=55  Identities=27%  Similarity=0.477  Sum_probs=48.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhhhh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASR----LPGRTDNEIKNHWHSRLSKKR  116 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~~~Knrw~~~lkkk~  116 (245)
                      ....++++||.|||+.|+++|++||. +|+.|+..    |+|||+.+||+||+++++...
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34457899999999999999999996 99999997    489999999999999997543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=88.89  Aligned_cols=61  Identities=18%  Similarity=0.324  Sum_probs=56.3

Q ss_pred             cccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhC-----CCCCHHHHHHHHHHhhhh
Q 037956           50 GKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRL-----PGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        50 ~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~l-----pgRT~~~~Knrw~~~lkk  114 (245)
                      +.-+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..+||+||+.+.++
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~   82 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK   82 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence            56688999999986    89999999999999999999999999999     589999999999998873

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=2.1e-10  Score=80.74  Aligned_cols=48  Identities=17%  Similarity=0.054  Sum_probs=44.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ..++||+||++++++++..||++|..||..|||||..+|..+|+...+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999999999999986544

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.00  E-value=4.2e-11  Score=91.39  Aligned_cols=48  Identities=10%  Similarity=0.282  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCCcccccccccCccccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYG---IWNWSEMPKYAGLLRCGKSCRLRWMNYL   61 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g---~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L   61 (245)
                      .+++||+|||++|..++..||   ...|..||++||+ |+.+||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            367899999999999999997   3479999999998 99999999998764

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.90  E-value=2e-09  Score=78.32  Aligned_cols=49  Identities=18%  Similarity=0.333  Sum_probs=44.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           64 DIRRGNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        64 ~i~k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ....+.||.||+++|.+++.+|+    ++|.+||.+| |||..+|++||..++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            34578999999999999999997    6899999998 9999999999998765

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.86  E-value=3.6e-09  Score=92.13  Aligned_cols=51  Identities=16%  Similarity=0.251  Sum_probs=46.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKR  116 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkkk~  116 (245)
                      ..++||.||+.++++++.+||++|..||+.+++||..|||++|+...++..
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRln  182 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN  182 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence            457999999999999999999999999999999999999999998877543

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=1.8e-09  Score=75.91  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccc
Q 037956            7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY   60 (245)
Q Consensus         7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~   60 (245)
                      +++.....++||+||++++.+++..||. +|..||.+|++ |+..||+.+|...
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~-rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLER-KSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTT-SCHHHHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHh
Confidence            3455556789999999999999999996 99999999998 9999999998654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.79  E-value=1.1e-09  Score=77.37  Aligned_cols=48  Identities=15%  Similarity=0.281  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccc---ccccCcccccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMP---KYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia---~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      .+++||+|||+.|++.|++||. +|..|+   .++.+ |+.-.+++||.+...
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence            6789999999999999999998 999999   57666 999999999998665

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.68  E-value=2.7e-08  Score=72.55  Aligned_cols=48  Identities=15%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      ...||.+|+.+|.+++..|+    .+|..||..+||||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            46899999999999999998    4799999999999999999999988764

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.62  E-value=3.1e-08  Score=94.82  Aligned_cols=47  Identities=17%  Similarity=0.306  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      ..||.+|-.++++++.+||.+|..||..+++||..|||++|+.+-++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999865554

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.56  E-value=7.9e-09  Score=75.17  Aligned_cols=50  Identities=16%  Similarity=0.234  Sum_probs=43.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccCcccccccccccccccc
Q 037956           11 SLRKGSWTPEEDRKLIAYIRRYGI---WNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        11 ~lkkg~WT~EEDe~L~~~V~~~g~---~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      +..++.||.|||++|.+++..|+.   ..|..||.++|  |+..+|+.||..+..
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence            456789999999999999999983   46999999984  999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.54  E-value=1e-07  Score=66.64  Aligned_cols=47  Identities=26%  Similarity=0.473  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCc-HHHHhh-hCCCCCHHHHHHHHHHhhh
Q 037956           67 RGNFTQEEDETIIKLHEQL--------GNR-WSAIAS-RLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~--------G~k-W~~IA~-~lpgRT~~~~Knrw~~~lk  113 (245)
                      +.+||.|||..|++.|.+|        |++ |..||. .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        543 999999 8999999999999998775

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.52  E-value=1.4e-08  Score=71.04  Aligned_cols=48  Identities=23%  Similarity=0.402  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccCcccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRY--------GIWNWSEMPK-YAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~--------g~~nW~~Ia~-~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      |.+||+|||++|+++|..|        |..-|..+++ .++. ++-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence            6789999999999999999        5556999999 7887 999999999998875

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.35  E-value=1.2e-07  Score=82.47  Aligned_cols=49  Identities=24%  Similarity=0.445  Sum_probs=45.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccccc
Q 037956           12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      ...++||+||++++++++.+||. +|..||+.+++ |+..||+.+|.++.+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgT-KT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence            45679999999999999999997 99999999999 999999999988775

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.32  E-value=1.6e-07  Score=68.42  Aligned_cols=48  Identities=25%  Similarity=0.425  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCcccccccccCcccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGI---WNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~---~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      ...||.+|+++|..++..|+.   ++|..||..+|+ |+..+|+.||...+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence            457999999999999999975   579999999999 999999999997754

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.29  E-value=9.2e-07  Score=66.68  Aligned_cols=45  Identities=22%  Similarity=0.454  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHHHhCC---cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           69 NFTQEEDETIIKLHEQLGN---RWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      -||.|||..|+..+++-|.   .|..||+.|.+|+.++|++||+.+++
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            5999999999999999996   79999999999999999999999886

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.22  E-value=3.2e-06  Score=59.59  Aligned_cols=50  Identities=18%  Similarity=0.229  Sum_probs=45.3

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhh-hCCCCCHHHHHHHHHHh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLGNRWSAIAS-RLPGRTDNEIKNHWHSR  111 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~~~Knrw~~~  111 (245)
                      .|.+....||+||-.+..+++.+||..|..|++ .|++||..+|...|+..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            367788899999999999999999999999999 58999999999988743

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.42  E-value=3e-07  Score=65.77  Aligned_cols=44  Identities=16%  Similarity=0.413  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCC---cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           69 NFTQEEDETIIKLHEQLGN---RWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      -||.|||..|+..+++-|.   .|..||+.| +|+++||++||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999997   799999999 9999999999998875

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.05  E-value=5.6e-07  Score=65.43  Aligned_cols=43  Identities=23%  Similarity=0.401  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----cHHHHhhhCCCCCHHHHHHHHH
Q 037956           67 RGNFTQEEDETIIKLHEQLGN----RWSAIASRLPGRTDNEIKNHWH  109 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~~~Knrw~  109 (245)
                      ...||.+|+++|..++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999884

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.04  E-value=9.6e-06  Score=61.52  Aligned_cols=55  Identities=20%  Similarity=0.399  Sum_probs=47.4

Q ss_pred             cccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCC-----CCCHHHHHHHHHHhhhh
Q 037956           56 RWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLP-----GRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        56 Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lp-----gRT~~~~Knrw~~~lkk  114 (245)
                      .|..+|.    ...||.||...|++|+++|+-+|..|+..+.     +||-.++|.||+.+.++
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~   82 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK   82 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence            3444554    3689999999999999999999999999874     79999999999998863

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.03  E-value=5.9e-06  Score=75.01  Aligned_cols=98  Identities=17%  Similarity=0.274  Sum_probs=78.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccc-------cccccc---------------------------
Q 037956           15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCR-------LRWMNY---------------------------   60 (245)
Q Consensus        15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr-------~Rw~n~---------------------------   60 (245)
                      +.||..|...++.++.+||..+|..||..|++ ++...++       .||...                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999987 7776654       122100                           


Q ss_pred             -------------c---cCCCCCCCCCHHHHHHHHHHHHHhCC----cHHHHhh------------hCCCCCHHHHHHHH
Q 037956           61 -------------L---RPDIRRGNFTQEEDETIIKLHEQLGN----RWSAIAS------------RLPGRTDNEIKNHW  108 (245)
Q Consensus        61 -------------L---~p~i~k~~WT~EED~~Ll~lv~~~G~----kW~~IA~------------~lpgRT~~~~Knrw  108 (245)
                                   |   .+.-+...||.+||..|+-++.+||-    .|..|..            ++..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                         0   01224468999999999999999994    6999963            34679999999999


Q ss_pred             HHhhh
Q 037956          109 HSRLS  113 (245)
Q Consensus       109 ~~~lk  113 (245)
                      ..+++
T Consensus       270 ~tLi~  274 (304)
T 1ofc_X          270 NTLIT  274 (304)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99886

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.86  E-value=2.5e-05  Score=59.28  Aligned_cols=46  Identities=22%  Similarity=0.125  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhh
Q 037956           67 RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRL  112 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~l  112 (245)
                      ...||+||.++..+++..||++|..||..||+||..+|-..|+..-
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K   88 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   88 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence            3689999999999999999999999999999999999999887543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=6.4e-06  Score=58.02  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-cccCcccccccccccc
Q 037956            7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPK-YAGLLRCGKSCRLRWM   58 (245)
Q Consensus         7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~-~~~~~Rt~kqCr~Rw~   58 (245)
                      +-.|.+....||+||-++..+++..||. +|..|++ .+++ |+..||..-|.
T Consensus         2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY   52 (63)
T 2yqk_A            2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYY   52 (63)
T ss_dssp             CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHH
T ss_pred             CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHh
Confidence            4578888999999999999999999998 9999999 5898 99999987664

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.85  E-value=2.8e-06  Score=61.75  Aligned_cols=44  Identities=11%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---CcccccccccCcccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIW---NWSEMPKYAGLLRCGKSCRLRWM   58 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~---nW~~Ia~~~~~~Rt~kqCr~Rw~   58 (245)
                      .+.||.+|+++|..++..|+.+   .|..||..||+ |+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence            3579999999999999999753   79999999998 99999999986

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.76  E-value=6.2e-05  Score=54.05  Aligned_cols=44  Identities=16%  Similarity=0.194  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHhh-hCCCCCHHHHHHHHHH
Q 037956           67 RGNFTQEEDETIIKLHEQLGNRWSAIAS-RLPGRTDNEIKNHWHS  110 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~~~Knrw~~  110 (245)
                      ...||+||-.+..+++..||..|..|++ .|++||..+|...|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4579999999999999999999999999 5999999999998884

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.52  E-value=2.8e-05  Score=74.46  Aligned_cols=49  Identities=24%  Similarity=0.445  Sum_probs=43.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccccc
Q 037956           12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      ....+||.+|-++++.++.+||. +|..||.++++ |+..||+..|.++-.
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgT-KT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR  426 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            34679999999999999999997 99999999999 999999998875443

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.16  E-value=0.00044  Score=50.98  Aligned_cols=48  Identities=19%  Similarity=0.524  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----------CcHHHHhhhCC----CCCHHHHHHHHHHhhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLG----------NRWSAIASRLP----GRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G----------~kW~~IA~~lp----gRT~~~~Knrw~~~lkk  114 (245)
                      ...||.+|-.+||+++..+.          ..|..||..|.    .||+.||+++|.++.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            46799999999999997633          14999999873    69999999999998874

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.16  E-value=0.00011  Score=55.86  Aligned_cols=48  Identities=17%  Similarity=0.317  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccc----Ccccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG----LLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~----~~Rt~kqCr~Rw~n~L~   62 (245)
                      -++||.||+..|++++++|+. .|..|+..+.    ..|+.-+.+.||....+
T Consensus        30 ~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999997 9999999883    23999999999986543

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.99  E-value=0.00018  Score=54.52  Aligned_cols=43  Identities=12%  Similarity=0.270  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWM   58 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~   58 (245)
                      ...||+||.+++.+++..||. +|..||..+++ |+..+|..-|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~-Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTT-CCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCC-CCHHHHHHHHh
Confidence            357999999999999999997 99999999998 99999987664

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.95  E-value=0.00022  Score=51.13  Aligned_cols=43  Identities=12%  Similarity=0.305  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccc-cccCcccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPK-YAGLLRCGKSCRLRWM   58 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~-~~~~~Rt~kqCr~Rw~   58 (245)
                      ...||+||-++...++..||. +|..|++ ++++ |+..+|..-|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHH
Confidence            457999999999999999998 9999999 5998 99999987665

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.90  E-value=6.4e-05  Score=55.55  Aligned_cols=49  Identities=29%  Similarity=0.605  Sum_probs=39.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---cCccccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGI---------WNWSEMPKYA---GLLRCGKSCRLRWMNYL   61 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~---------~nW~~Ia~~~---~~~Rt~kqCr~Rw~n~L   61 (245)
                      +...||.+|-..|+.+......         .-|..||..|   |..|++.||+.+|.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999865311         1599999975   45699999999998754

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.90  E-value=0.0021  Score=54.30  Aligned_cols=46  Identities=13%  Similarity=0.265  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CcHHHHhh--hC------------CCCCHHHHHHHHHHhhh
Q 037956           68 GNFTQEEDETIIKLHEQLG-NRWSAIAS--RL------------PGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G-~kW~~IA~--~l------------pgRT~~~~Knrw~~~lk  113 (245)
                      ..||.+||..|+..+.+|| ++|..|-.  .|            ..+++..|..|...+|+
T Consensus       135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~  195 (211)
T 4b4c_A          135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK  195 (211)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence            3699999999999999999 89999965  22            12467789999888776

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.82  E-value=0.0015  Score=60.68  Aligned_cols=99  Identities=19%  Similarity=0.283  Sum_probs=75.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccc-------cccccc---------------------------
Q 037956           15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCR-------LRWMNY---------------------------   60 (245)
Q Consensus        15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr-------~Rw~n~---------------------------   60 (245)
                      +.||.-|=..++.++.+||..+-..||..|+++++...++       .||...                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999988999999997226665554       111110                           


Q ss_pred             -------------c----cCC-CCCCCCCHHHHHHHHHHHHHhC----CcHHHHhhh------------CCCCCHHHHHH
Q 037956           61 -------------L----RPD-IRRGNFTQEEDETIIKLHEQLG----NRWSAIASR------------LPGRTDNEIKN  106 (245)
Q Consensus        61 -------------L----~p~-i~k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~------------lpgRT~~~~Kn  106 (245)
                                   |    .+. -+...||.+||..||-++.+||    +.|..|-..            |..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0    011 1345799999999999999999    569999443            35799999999


Q ss_pred             HHHHhhh
Q 037956          107 HWHSRLS  113 (245)
Q Consensus       107 rw~~~lk  113 (245)
                      |...+|+
T Consensus       284 Rc~tLi~  290 (374)
T 2y9y_A          284 RGNTLLQ  290 (374)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999996

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.39  E-value=0.00055  Score=48.94  Aligned_cols=47  Identities=13%  Similarity=0.219  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC--CCcccccccccCcccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGI--WNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~--~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      --.||.|||..++..+++-|.  ..|..||..+ + |++.|+..||+..+.
T Consensus        14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK   62 (70)
Confidence            346999999999999998885  3799999999 4 999999999987654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.32  E-value=0.0012  Score=49.78  Aligned_cols=49  Identities=18%  Similarity=0.304  Sum_probs=42.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC--CCcccccccccCccccccccccccc
Q 037956           10 PSLRKGSWTPEEDRKLIAYIRRYGI--WNWSEMPKYAGLLRCGKSCRLRWMN   59 (245)
Q Consensus        10 p~lkkg~WT~EEDe~L~~~V~~~g~--~nW~~Ia~~~~~~Rt~kqCr~Rw~n   59 (245)
                      .|-+-.-||.|||..++..+++-|.  ..|..||+.+++ |++.|+.+||+.
T Consensus        29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~   79 (95)
T 1ug2_A           29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE   79 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred             CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence            3444557999999999999999875  479999999998 999999999985

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.11  E-value=0.15  Score=35.89  Aligned_cols=46  Identities=17%  Similarity=0.187  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc---HHHHhhhC--CCCCHHHHHHHHHHh
Q 037956           66 RRGNFTQEEDETIIKLHEQLGNR---WSAIASRL--PGRTDNEIKNHWHSR  111 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G~k---W~~IA~~l--pgRT~~~~Knrw~~~  111 (245)
                      .+-.||+|..+..++++..+|..   +..|.+.|  +|.|..+|+.|.+.+
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            45679999999999999999954   89998875  789999999987653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.95  E-value=0.093  Score=47.46  Aligned_cols=46  Identities=22%  Similarity=0.275  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           68 GNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +.||..+...++.++.+||. .|..||..++|+|..+|+.++..+..
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~  157 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE  157 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            57999999999999999994 89999999999999999887776665

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.01  E-value=0.03  Score=42.23  Aligned_cols=49  Identities=16%  Similarity=0.314  Sum_probs=39.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccc----Ccccccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG----LLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~----~~Rt~kqCr~Rw~n~L~   62 (245)
                      +-..||.||...|++++++|.- .|..|+....    ..|+..+.++||.....
T Consensus        29 ~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            3467999999999999999997 9999988654    13888888888876443

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.84  E-value=0.14  Score=42.86  Aligned_cols=48  Identities=21%  Similarity=0.301  Sum_probs=40.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CcHHHHhhh--CCCCCHHHHHHHHHHhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLG---NRWSAIASR--LPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G---~kW~~IA~~--lpgRT~~~~Knrw~~~lk  113 (245)
                      ....||+.|-..|+.++.+||   .+|..|+..  |.+++...|+..+..++.
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~   58 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHN   58 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999   589999864  889999999987776665

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.30  E-value=0.32  Score=43.16  Aligned_cols=28  Identities=36%  Similarity=0.805  Sum_probs=25.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 037956           15 GSWTPEEDRKLIAYIRRYGIWNWSEMPK   42 (245)
Q Consensus        15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~   42 (245)
                      ..|+.+||..|+..|.+||.|+|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4599999999999999999999999965

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=89.23  E-value=0.14  Score=35.96  Aligned_cols=48  Identities=13%  Similarity=0.179  Sum_probs=34.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC---cccccccccC-ccccccccccccc
Q 037956           11 SLRKGSWTPEEDRKLIAYIRRYGIWN---WSEMPKYAGL-LRCGKSCRLRWMN   59 (245)
Q Consensus        11 ~lkkg~WT~EEDe~L~~~V~~~g~~n---W~~Ia~~~~~-~Rt~kqCr~Rw~n   59 (245)
                      ...+..||+|..+....+|..+|. .   +..|.+.|+. +.+..+++-+.+.
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            345678999999999999999994 4   5677776652 1456666555443

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=80.97  E-value=3.4  Score=36.50  Aligned_cols=47  Identities=13%  Similarity=0.244  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC---CcHHHHhh--hCCCCCHHHHHHHHHHhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLG---NRWSAIAS--RLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G---~kW~~IA~--~lpgRT~~~~Knrw~~~lk  113 (245)
                      +++||.-|-..|+..+.+||   .+|..|+.  .|+.++...++.-+..++.
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~   54 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME   54 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence            57899999999999999999   58999976  4889999999998887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-20
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-12
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-19
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-11
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	3e-17
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-12
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	9e-16
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	0.004
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-06
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-06
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-14
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	7e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	8e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-07
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	6e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	9e-11
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	9e-06
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	5e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	6e-07

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (194), Expect = 4e-20
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64
          L KG WT EED++LI  +++YG   WS + K+    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (140), Expect = 3e-12
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 65  IRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113
           + +G +T+EED+ +IKL ++ G  RWS IA  L GR   + +  WH+ L+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (185), Expect = 8e-19
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64
          K  WT EED KL   + + G  +W  +  Y    R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (130), Expect = 7e-11
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 67  RGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113
           +  +T+EEDE + KL EQ G + W  IA+ LP RTD + ++ W   L+
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.9 bits (176), Expect = 3e-17
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 14 KGSWTPEEDRKLIAYIRRYGIW-----NWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRG 68
          K S+T EED  ++  +R+          + E+  Y      G S R R+  YL   +   
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYV 59

Query: 69 NFTQEEDETIIKLHEQLGN 87
              +  + +      L  
Sbjct: 60 YEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.0 bits (145), Expect = 1e-12
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 67  RGNFTQEEDETIIKLHEQLGNR------WSAIASRLPGRTDNEIKNHWHSRLSKK 115
           + +FT EEDE I+ +  +   R      +  I+  +P  T N I++ +   LSK+
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 68.2 bits (166), Expect = 9e-16
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 17 WTPEEDRKLIAYIRRYGIWNWSEMPKYA---GLLRCGKSCRLRWMNYLR-----PDIRRG 68
          ++  E   L+  +   G   W ++   A      R     + +W   +      P  RRG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 69 NFT-QEEDETIIKLHEQLGNR 88
              Q+  + ++  H     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 70  FTQEEDETIIKLHEQLGN-RWSAIA----SRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQ 124
           F+  E E +++  E LG  RW  +          RT  ++K+ W + +    +    ++ 
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 125 VPS 127
            P 
Sbjct: 63  EPV 65

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 1e-14
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL-RCGKSCRLRWMNYLR 62
          ++ +W  EED+ L + +R+YG  NWS++  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 66  RRGNFTQEEDETIIKLHEQLGN-RWSAIASRLP--GRTDNEIKNHWH 109
           +R  +  EED+ +     + G   WS I        RT   +K+ W 
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWR 47

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 1e-14
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL-RCGKSCRLRWMNYLRPDI 65
          +K  WT EE   + A +++YG  NW+ + K    + R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 66  RRGNFTQEEDETIIKLHEQLG-NRWSAIASR--LPGRTDNEIKNHWH 109
           ++  +T EE E +    ++ G   W+AI+       RT   IK+ W 
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.9 bits (153), Expect = 3e-14
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 67  RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRL 112
           + ++T+EED  I + H++LGNRW+ IA  LPGRTDN IKNHW+S +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (122), Expect = 7e-10
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62
          K SWT EEDR +    +R G   W+E+ K     R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPG-RTDNAIKNHWNSTMR 47

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 1e-12
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 17 WTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDE 76
          WT EE       + ++G   W+++ K  G  R     +     Y +  ++ G   +  ++
Sbjct: 5  WTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKCGLDKETPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 1e-10
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 70  FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQQVPSVT 129
           +T EE E   +   + G RW+ I+  +  RT  ++K++       K   K    +     
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV--KCGLDKETPNQ 62

Query: 130 KS 131
           K+
Sbjct: 63  KT 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 8e-12
 Identities = 11/60 (18%), Positives = 23/60 (38%)

Query: 58  MNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRL 117
           M   +       ++++E ET  +   Q    +  IAS L  +T  E   +++     +  
Sbjct: 8   MKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENY 67

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 1e-11
 Identities = 9/57 (15%), Positives = 26/57 (45%)

Query: 67  RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLTKNNQQ 123
              +T EE    ++   + G  + AI+  +  ++  ++KN + +   +  + +  Q+
Sbjct: 5   NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQE 61

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62
             WT EE    +  IR+YG  ++  +    G  +     +  ++NY R
Sbjct: 5  NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 2e-11
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 7  SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL--RCGKSCRLRW 57
           E+    +  WT  + + L   +++Y   +     K A  +  +  + C  R+
Sbjct: 5  KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 6e-09
 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 62  RPDIRRGNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWH 109
           R       +TQ + + +    +Q      + W  IA  +P ++  +    + 
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 58

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 9e-11
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 16 SWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60
          SWT +E+  L+  +   G  NW ++       +  + C   +M Y
Sbjct: 3  SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 9e-06
 Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 69  NFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWH 109
           ++T +E+  +++     G   W  +A+++  +T  E + H+ 
Sbjct: 3   SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 46.5 bits (110), Expect = 5e-08
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 70  FTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWH 109
           ++ +E++   +          +RW+ +A  + GRT  E+K H+ 
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE 47

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 16 SWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLL--RCGKSCRLRWMNYLRPDIRR 67
           W+ +E++     +  Y           A  +  R  +  +  +   L  DI+ 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 71  TQEEDETIIKLHEQLGNR---WSAIASRLPGRTDNEIKNHWHS 110
           T+E D  I+ + ++ G +   +S I+ +L  +T  E+ + +  
Sbjct: 37  TREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRE 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.77
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.76
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.74
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.72
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.63
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.59
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.59
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.52
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.52
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.5
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.5
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.48
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.47
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.43
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.41
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.37
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.37
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.36
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.33
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.29
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.26
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.26
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.23
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.01
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.98
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.76
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.31
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.26
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.72
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.72
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.66
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.74
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.01
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.92
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.3
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	92.1
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	91.36
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	90.21

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.1e-21  Score=146.31  Aligned_cols=71  Identities=23%  Similarity=0.287  Sum_probs=65.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIW-----NWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQL   85 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~-----nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~   85 (245)
                      |++||+|||++|+++|.+||..     +|..||++|++ |+++|||.||.++|+|.+++++||.+||.+|++++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpg-Rt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCC-CCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     49999999998 99999999999999999999999999999988766443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=5e-20  Score=125.03  Aligned_cols=52  Identities=48%  Similarity=0.896  Sum_probs=49.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC
Q 037956           12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD   64 (245)
Q Consensus        12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~   64 (245)
                      +.||+||+|||++|+++|.+||.++|..||+.|++ |++.||+.||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            57999999999999999999998899999999998 99999999999999985

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.6e-18  Score=115.15  Aligned_cols=47  Identities=55%  Similarity=1.020  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +++||+|||++|+++|++||++|+.||.+|||||+++|||||+.+||
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=3.9e-19  Score=119.57  Aligned_cols=50  Identities=34%  Similarity=0.703  Sum_probs=48.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD   64 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~   64 (245)
                      |++||+|||++|+.+|.+||.++|..||.+|++ |++.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHhhCCCC
Confidence            688999999999999999998899999999998 99999999999999985

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=4.4e-17  Score=110.29  Aligned_cols=49  Identities=41%  Similarity=0.864  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           65 IRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        65 i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      +.+|+||+|||++|+++|.+|| ++|..||++|+|||+.||++||.++|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            5789999999999999999999 589999999999999999999999885

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.63  E-value=1.9e-17  Score=122.17  Aligned_cols=72  Identities=18%  Similarity=0.365  Sum_probs=61.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc----ccCccccccccccccccc-----cCCCCCCCCCHHHHHHHHHHHHHhC
Q 037956           16 SWTPEEDRKLIAYIRRYGIWNWSEMPKY----AGLLRCGKSCRLRWMNYL-----RPDIRRGNFTQEEDETIIKLHEQLG   86 (245)
Q Consensus        16 ~WT~EEDe~L~~~V~~~g~~nW~~Ia~~----~~~~Rt~kqCr~Rw~n~L-----~p~i~k~~WT~EED~~Ll~lv~~~G   86 (245)
                      +||+|||++|+.+|.+||.++|..|++.    +++ |++.||++||.|+|     .|..+++.|+++|   |+..|..++
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~-Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccC-CCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            7999999999999999999999999985    344 99999999999998     4677889999877   555666666


Q ss_pred             CcHHH
Q 037956           87 NRWSA   91 (245)
Q Consensus        87 ~kW~~   91 (245)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=8.5e-16  Score=102.93  Aligned_cols=47  Identities=43%  Similarity=0.757  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ++.||+|||++|+++|.+|| ++|..||.+|+|||+.||++||.++|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            57899999999999999999 589999999999999999999999885

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.3e-17  Score=109.78  Aligned_cols=53  Identities=28%  Similarity=0.458  Sum_probs=48.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccc--ccCccccccccccccccccCCCC
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKY--AGLLRCGKSCRLRWMNYLRPDIR   66 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~--~~~~Rt~kqCr~Rw~n~L~p~i~   66 (245)
                      +|++||+|||++|+.+|.+||.++|..||+.  +++ |++.||++||.+++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~-Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCC-cCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999899999987  446 9999999999999998764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.8e-15  Score=98.71  Aligned_cols=48  Identities=25%  Similarity=0.451  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhC--CCCCHHHHHHHHHHhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLGN-RWSAIASRL--PGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~l--pgRT~~~~Knrw~~~lk  113 (245)
                      ++++||+|||+.|+++|.+||. +|+.||..+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999995 999999985  49999999999998764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8e-16  Score=103.94  Aligned_cols=50  Identities=28%  Similarity=0.471  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccc-Ccccccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG-LLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~-~~Rt~kqCr~Rw~n~L~   62 (245)
                      +|++||+|||++|+++|.+||.++|..|++.++ .+|++.||++||.++..
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999999999998754 23999999999998653

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.1e-15  Score=101.34  Aligned_cols=47  Identities=34%  Similarity=0.608  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      |++||+|||++|+.+|+.||. +|..||++|++ |++.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~g-Rt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPG-RTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTT-CCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCC-CCHHHHHHHHHHHcC
Confidence            679999999999999999998 89999999998 999999999998763

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-15  Score=101.18  Aligned_cols=44  Identities=25%  Similarity=0.619  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccc
Q 037956           16 SWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY   60 (245)
Q Consensus        16 ~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~   60 (245)
                      .||+|||++|+++|++||.++|..||++|++ |++.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~-Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCC-CCHHHHHHHHHHh
Confidence            4999999999999999999899999999998 9999999999876

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-14  Score=98.20  Aligned_cols=48  Identities=27%  Similarity=0.495  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CcHHHHhhh--CCCCCHHHHHHHHHHhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLG-NRWSAIASR--LPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~--lpgRT~~~~Knrw~~~lk  113 (245)
                      ++.+||+|||++|+++|.+|| ++|..||..  |+|||+.+|++||+++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            468999999999999999999 589999998  569999999999999886

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=1.9e-14  Score=106.68  Aligned_cols=51  Identities=35%  Similarity=0.589  Sum_probs=46.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc------HHHHhhhCCCCCHHHHHHHHHHhhhhhhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLGNR------WSAIASRLPGRTDNEIKNHWHSRLSKKRLT  118 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~~~Knrw~~~lkkk~~~  118 (245)
                      +++||+|||++|+++|.+||.+      |..||.+|||||+.||++||+++|. ..+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~-p~l~   57 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLS-KRLE   57 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTG-GGCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcC-cccc
Confidence            5789999999999999999975      9999999999999999999999998 3443

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.9e-14  Score=99.78  Aligned_cols=47  Identities=23%  Similarity=0.331  Sum_probs=44.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      ..||.|||++|++++..||.+|..||.+|||||+.+|++||+.++++
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            56999999999999999999999999999999999999999998874

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.7e-14  Score=92.43  Aligned_cols=43  Identities=19%  Similarity=0.470  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHh
Q 037956           69 NFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSR  111 (245)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~  111 (245)
                      .||.|||.+|+++|++|| ++|..||++|+|||+.||++||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.9e-13  Score=94.39  Aligned_cols=50  Identities=16%  Similarity=0.288  Sum_probs=45.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC----cHHHHhhhCCCCCHHHHHHHHHHh
Q 037956           62 RPDIRRGNFTQEEDETIIKLHEQLGN----RWSAIASRLPGRTDNEIKNHWHSR  111 (245)
Q Consensus        62 ~p~i~k~~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~~~Knrw~~~  111 (245)
                      .+...+++||+|||++|+++|..||.    +|..||.+|||||+.+|++||..+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667889999999999999999995    699999999999999999999754

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.5e-14  Score=96.49  Aligned_cols=52  Identities=15%  Similarity=0.385  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCC---CcccccccccCccccccccccccc
Q 037956            7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIW---NWSEMPKYAGLLRCGKSCRLRWMN   59 (245)
Q Consensus         7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~---nW~~Ia~~~~~~Rt~kqCr~Rw~n   59 (245)
                      ..++...+++||+|||++|+.+|..||.+   +|..||++||+ |++.||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~-Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            46678889999999999999999999975   49999999998 999999999963

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=5.7e-13  Score=99.82  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=63.1

Q ss_pred             cccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCc---HHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           43 YAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNR---WSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        43 ~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~k---W~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      .++. .+..++..++.+...+......||.|||+.||+.++++|.+   |..||+.|+||++++|++||..+++.
T Consensus        10 ~~p~-~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          10 ALPK-ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCCC-CCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             cCCC-CCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3444 67777888888888888888899999999999999999987   99999999999999999999998873

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.8e-14  Score=100.88  Aligned_cols=57  Identities=19%  Similarity=0.370  Sum_probs=51.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCH
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQ   72 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~   72 (245)
                      .++||+|||++|+.+|..||. +|..||++|++ ||+.||+.||.+++.+..+.+.+..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~ry~~~~~~~~k~~~~~~   58 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKCGLDKE   58 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            367999999999999999996 99999999998 9999999999999988777766554

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.33  E-value=9.5e-13  Score=91.70  Aligned_cols=46  Identities=22%  Similarity=0.494  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           68 GNFTQEEDETIIKLHEQLGN----RWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      .+||+|||++|++++..||.    +|.+||.+|||||..||++||+.+++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            47999999999999999995    59999999999999999999987665

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.9e-12  Score=90.47  Aligned_cols=48  Identities=17%  Similarity=0.302  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK  114 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk  114 (245)
                      +..||++|+++|++++..||.+|..||.+|+|||..+|+++|+.+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999987653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.26  E-value=4.8e-12  Score=92.71  Aligned_cols=47  Identities=28%  Similarity=0.575  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhhh
Q 037956           69 NFTQEEDETIIKLHEQLGN-RWSAIASR----LPGRTDNEIKNHWHSRLSKK  115 (245)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~~~Knrw~~~lkkk  115 (245)
                      +||.|||+.|+++|.+||. +|..|++.    ++|||+.+|++||+++|+..
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~   53 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhh
Confidence            7999999999999999995 89999985    68999999999999999743

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.26  E-value=1.1e-13  Score=96.57  Aligned_cols=43  Identities=12%  Similarity=0.337  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---cccccccccCcccccccccccc
Q 037956           15 GSWTPEEDRKLIAYIRRYGIWN---WSEMPKYAGLLRCGKSCRLRWM   58 (245)
Q Consensus        15 g~WT~EEDe~L~~~V~~~g~~n---W~~Ia~~~~~~Rt~kqCr~Rw~   58 (245)
                      .+||+|||++|+.+|..||.++   |..||.+|++ |++.||+.||.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~g-Rt~~qc~~r~~   47 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYE   47 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCC-CCHHHHHHHHH
Confidence            4799999999999999999864   9999999998 99999999995

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.2e-12  Score=90.97  Aligned_cols=48  Identities=21%  Similarity=0.106  Sum_probs=44.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      ...+||+||+++|++++..||.+|..||.+|||||..+|+++|+...+
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            446899999999999999999999999999999999999999986543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.5e-11  Score=84.68  Aligned_cols=47  Identities=26%  Similarity=0.494  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      ..+||++||++|..++..||. +|..||.+||+ |+..||+.+|.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~-kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence            357999999999999999997 99999999998 999999999988654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.9e-11  Score=84.40  Aligned_cols=50  Identities=10%  Similarity=0.156  Sum_probs=44.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccc
Q 037956           10 PSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL   61 (245)
Q Consensus        10 p~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L   61 (245)
                      ......+||+|||++|+.+|..||. +|..||.+|++ |+..||+.+|....
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~-rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYYLTK   62 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTTT-SCHHHHHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            3445578999999999999999997 99999999998 99999999997543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=9.5e-10  Score=82.02  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=46.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCC--cccccccccCccccccccccccccc
Q 037956            8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWN--WSEMPKYAGLLRCGKSCRLRWMNYL   61 (245)
Q Consensus         8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~~n--W~~Ia~~~~~~Rt~kqCr~Rw~n~L   61 (245)
                      .++|.....||.|||+.|+..++++|...  |..||+.|++ |++.|||.||+..+
T Consensus        27 ~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~-Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHHH
T ss_pred             CCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            45677788999999999999999999632  9999999998 99999999997533

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=6.4e-07  Score=60.43  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHhhh-CCCCCHHHHHHHHHH
Q 037956           68 GNFTQEEDETIIKLHEQLGNRWSAIASR-LPGRTDNEIKNHWHS  110 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G~kW~~IA~~-lpgRT~~~~Knrw~~  110 (245)
                      ..||+||-.+..+++..||.+|..|++. +|+||..+|.+.|+.
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3699999999999999999999999986 699999999999884

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.8e-07  Score=61.23  Aligned_cols=44  Identities=20%  Similarity=0.388  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHhh
Q 037956           68 GNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWHSRL  112 (245)
Q Consensus        68 ~~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~~~Knrw~~~l  112 (245)
                      +.||.+|+.+|.+++.+|.    .+|.+||..+ |||..+|..||..+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999997    5799999999 999999999997543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.1e-06  Score=58.36  Aligned_cols=44  Identities=16%  Similarity=0.293  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCcccccccccCcccccccccccccc
Q 037956           15 GSWTPEEDRKLIAYIRRYGI---WNWSEMPKYAGLLRCGKSCRLRWMNY   60 (245)
Q Consensus        15 g~WT~EEDe~L~~~V~~~g~---~nW~~Ia~~~~~~Rt~kqCr~Rw~n~   60 (245)
                      +.||++|+.+|.+++.+|..   ..|..||..+|  |+..+|..||...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            47999999999999999964   35999999994  9999999999754

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=5.1e-05  Score=48.21  Aligned_cols=46  Identities=26%  Similarity=0.551  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHhhhC---CCCCHHHHHHHHHHhh
Q 037956           67 RGNFTQEEDETIIKLHEQLGNRWSAIASRL---PGRTDNEIKNHWHSRL  112 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~~l---pgRT~~~~Knrw~~~l  112 (245)
                      +..||+||-.-|+..|+.||+.|..|-=.+   |||+..++-.+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            457999999999999999999999996554   8999999999988653

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=5.4e-06  Score=55.71  Aligned_cols=42  Identities=12%  Similarity=0.249  Sum_probs=38.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc-ccCccccccccccccc
Q 037956           16 SWTPEEDRKLIAYIRRYGIWNWSEMPKY-AGLLRCGKSCRLRWMN   59 (245)
Q Consensus        16 ~WT~EEDe~L~~~V~~~g~~nW~~Ia~~-~~~~Rt~kqCr~Rw~n   59 (245)
                      .||+||-.++.+++..||. +|..|++. +|+ |+..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~-Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            6999999999999999998 99999985 577 999999987754

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6e-05  Score=50.94  Aligned_cols=47  Identities=23%  Similarity=0.430  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-HHHHhh-hCCCCCHHHHHHHHHHhhh
Q 037956           67 RGNFTQEEDETIIKLHEQLG--------NR-WSAIAS-RLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G--------~k-W~~IA~-~lpgRT~~~~Knrw~~~lk  113 (245)
                      +.+||.|||+.|++.|..+.        ++ |..+++ .++.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999874        22 999995 6899999999999998775

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00023  Score=47.96  Aligned_cols=48  Identities=21%  Similarity=0.360  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------C--Ccccccc-cccCcccccccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGI------W--NWSEMPK-YAGLLRCGKSCRLRWMNYLR   62 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~------~--nW~~Ia~-~~~~~Rt~kqCr~Rw~n~L~   62 (245)
                      |.+||.+||+.|+++|..+..      +  =|.++++ .++. ++-.+-|+||...|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~-HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhc
Confidence            568999999999999998843      1  2888885 4565 999999999988774

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.74  E-value=0.0014  Score=44.62  Aligned_cols=45  Identities=18%  Similarity=0.215  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCcH---HHHhhh--CCCCCHHHHHHHHHHh
Q 037956           67 RGNFTQEEDETIIKLHEQLGNRW---SAIASR--LPGRTDNEIKNHWHSR  111 (245)
Q Consensus        67 k~~WT~EED~~Ll~lv~~~G~kW---~~IA~~--lpgRT~~~~Knrw~~~  111 (245)
                      +-.||+|+.+..++++..||..|   ..|...  ++|+|..+|+.+.+.+
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            45699999999999999999877   577766  5899999999987654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.011  Score=40.48  Aligned_cols=51  Identities=16%  Similarity=0.287  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc----HHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 037956           66 RRGNFTQEEDETIIKLHEQLGNR----WSAIASRLPGRTDNEIKNHWHSRLSKKR  116 (245)
Q Consensus        66 ~k~~WT~EED~~Ll~lv~~~G~k----W~~IA~~lpgRT~~~~Knrw~~~lkkk~  116 (245)
                      ..+.|+++|-++|-.++..+.+.    |..+|..+..||+..|...|...++.+.
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~~   61 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG   61 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccccc
Confidence            35689999999999999998854    9999999999999999999998876443

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.92  E-value=0.0015  Score=44.54  Aligned_cols=47  Identities=13%  Similarity=0.193  Sum_probs=35.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCc--ccccccc--cCcccccccccccccc
Q 037956           13 RKGSWTPEEDRKLIAYIRRYGIWNW--SEMPKYA--GLLRCGKSCRLRWMNY   60 (245)
Q Consensus        13 kkg~WT~EEDe~L~~~V~~~g~~nW--~~Ia~~~--~~~Rt~kqCr~Rw~n~   60 (245)
                      .+-.||+||.+++..+|..+|...|  ..|...|  ++ ++..||+-+.+.|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~-lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDK-LTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTT-CCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCC-CCHHHHHHHHHHH
Confidence            4567999999999999999997444  3565554  44 6778888776654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0044  Score=42.57  Aligned_cols=49  Identities=24%  Similarity=0.403  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC---CCCcccccccccCccccccccccccccccC
Q 037956           14 KGSWTPEEDRKLIAYIRRYG---IWNWSEMPKYAGLLRCGKSCRLRWMNYLRP   63 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g---~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p   63 (245)
                      -+.|+++|-++|-.++....   .+-|..||..+|+ |++..|...|+..+..
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGt-RSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHcc-CCHHHHHHHHHhCccc
Confidence            45899999999999998764   4579999999999 9999999999877654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.10  E-value=0.12  Score=39.19  Aligned_cols=49  Identities=18%  Similarity=0.424  Sum_probs=40.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-Cc---HHHHhhh------------CCCCCHHHHHHHHHHhhh
Q 037956           65 IRRGNFTQEEDETIIKLHEQLG-NR---WSAIASR------------LPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        65 i~k~~WT~EED~~Ll~lv~~~G-~k---W~~IA~~------------lpgRT~~~~Knrw~~~lk  113 (245)
                      .++..+|.|||..|+-++.+|| ++   |..|-..            |..||+..|..|..++|+
T Consensus        47 nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~  111 (128)
T d1ofcx2          47 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT  111 (128)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHH
Confidence            3455799999999999999999 44   9888433            247999999999999886

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.36  E-value=0.31  Score=31.20  Aligned_cols=45  Identities=22%  Similarity=0.303  Sum_probs=39.2

Q ss_pred             CCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956           69 NFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS  113 (245)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk  113 (245)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+......-+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~   46 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE   46 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            489999999999999999 589999999999999999886654443

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.21  E-value=0.09  Score=32.84  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccC--cccccccccccc
Q 037956           14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGL--LRCGKSCRLRWM   58 (245)
Q Consensus        14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~--~Rt~kqCr~Rw~   58 (245)
                      |..||.||-.-|...|+++|. .|..|-=.+|.  +|++-....+|.
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~   46 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH   46 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHH
Confidence            457999999999999999998 99988654432  266555555443