Citrus Sinensis ID: 037966

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MDSSSIHHHEFIGISNNTPSCTPTATLTITTSSGAAGAVAAATSSPSPSSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQQPQPQPQPTPPNATA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHcccHHHHHHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdsssihhhefigisnntpsctptatltittssgaagavaaatsspspssstttlsryenqkrRDWNTFGQylrnhrpplslercsgahVLEFLRYLDQFgktkvhtqlcpffghpnppapcpcplrqaWGSLDALIGRLRAAFeehggkpeanpfgARAVRLYLREVRDSQAKARGisyekkkrkrppqqpqpqpqptppnata
Flexible Loop (DISEMBL)
MDSSSIHHHEFigisnntpsctPTATLTITTSSGAAGAVAaatsspspssstttlsryenqkrrDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEehggkpeanpfgARAVRLYLRevrdsqakargisyekkkrkrppqqpqpqpqptppnata
Low Complexity Region (SEG)
MDSSSIHHHEFIGISNNtpsctptatltittssgaagavaaatsspspssstttlsRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLcpffghpnppapcpcpLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRppqqpqpqpqptppNATA
Disordered region (IsUnstruct)
***********I****************************************************DWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE*********FGARAVRLYLR***************************************
Disordered Region (DISOPRED)
******************************************************************NTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRA***************ARAVRLYLREVRDSQA********************************
Disordered Region (DISEMBL)
********HEFIGISNNTPSCTPTATLTITTSS*************************ENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGIS**************************
Disordered Region (DISPRO)
*****IHHHEFIGISNNTP************************************SRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKK*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSSSIHHHEFIGISNNTPSCTPTATLTITTSSGAAGAVAAATSSPSPSSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQQPQPQPQPTPPNATA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
356535364	199	PREDICTED: uncharacterized protein LOC10	0.878	0.904	0.789	1e-69
225453046	181	PREDICTED: uncharacterized protein LOC10	0.8	0.906	0.730	1e-68
224099917	148	predicted protein [Populus trichocarpa]	0.692	0.959	0.964	1e-68
388519977	197	unknown [Medicago truncatula]	0.682	0.710	0.921	7e-67
224112577	138	predicted protein [Populus trichocarpa]	0.668	0.992	0.978	8e-67
118488802	203	unknown [Populus trichocarpa]	0.902	0.911	0.774	8e-67
118486110	199	unknown [Populus trichocarpa]	0.858	0.884	0.769	9e-67
357441159	183	hypothetical protein MTR_1g075990, parti	0.682	0.765	0.921	2e-66
270309068	225	G1-like protein [Selaginella moellendorf	0.790	0.72	0.751	2e-66
302783941	153	hypothetical protein SELMODRAFT_36560 [S	0.741	0.993	0.796	8e-66

>gi|356535364|ref|XP_003536216.1| PREDICTED: uncharacterized protein LOC100789834 isoform 1 [Glycine max] gi|356535366|ref|XP_003536217.1| PREDICTED: uncharacterized protein LOC100789834 isoform 2 [Glycine max]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/185 (78%), Positives = 155/185 (83%), Gaps = 5/185 (2%)

Query: 15  SNNTPSCTPTATLTITTSSGA-----AGAVAAATSSPSPSSSTTTLSRYENQKRRDWNTF 69
           S+NT S +  A +  T+ +           +++    S SS TTTLSRYENQKRRDWNTF
Sbjct: 9   SSNTDSNSTKAIINFTSGNSTNFPPAPPPSSSSPPCSSSSSGTTTLSRYENQKRRDWNTF 68

Query: 70  GQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQA 129
           GQYLRNHRPPLSL RCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPA CPCPLRQA
Sbjct: 69  GQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAACPCPLRQA 128

Query: 130 WGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPP 189
           WGSLDALIGRLRAAFEE+GGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 
Sbjct: 129 WGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPQ 188

Query: 190 QQPQP 194
           Q P P
Sbjct: 189 QPPLP 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453046|ref|XP_002267312.1| PREDICTED: uncharacterized protein LOC100260366 [Vitis vinifera]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/171 (73%), Positives = 142/171 (83%), Gaps = 7/171 (4%)

Query: 27  LTITTSSGAAGAVAAATSSPSPSSSTTTLS-------RYENQKRRDWNTFGQYLRNHRPP 79
           + + + SG   +V+   +  +P++S+T  S       RYENQKRRDWNTFGQYLRNHRPP
Sbjct: 1   MDLVSQSGNPNSVSTIINPNNPNTSSTISSPAVYAPSRYENQKRRDWNTFGQYLRNHRPP 60

Query: 80  LSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGR 139
           LSL  C+GAHVLEFLRYLDQFGKTKVH Q CPFFG  NPPAPCPCPLRQAWGSLDALIGR
Sbjct: 61  LSLSLCNGAHVLEFLRYLDQFGKTKVHNQTCPFFGLKNPPAPCPCPLRQAWGSLDALIGR 120

Query: 140 LRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQ 190
           LRAA+EEHGGKPEANPFGARAVRLYLREVRD QAKARG+SYEKK+++  P+
Sbjct: 121 LRAAYEEHGGKPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRSKPK 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099917|ref|XP_002311674.1| predicted protein [Populus trichocarpa] gi|222851494|gb|EEE89041.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 137/142 (96%), Positives = 138/142 (97%)

Query: 53  TTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPF 112
           TTLSRYENQKRRDWNTFGQYLRNHRPPLSL RCSGAHVLEFLRYLDQFGKTKVHTQLCPF
Sbjct: 2   TTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTQLCPF 61

Query: 113 FGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQ 172
           FGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPE NPFGARAVRLYLREVRDSQ
Sbjct: 62  FGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPENNPFGARAVRLYLREVRDSQ 121

Query: 173 AKARGISYEKKKRKRPPQQPQP 194
           +KARGISYEKKKRKRPPQQ  P
Sbjct: 122 SKARGISYEKKKRKRPPQQQNP 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519977|gb|AFK48050.1| unknown [Medicago truncatula]

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 129/140 (92%), Positives = 137/140 (97%)

Query: 48  PSSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHT 107
           P+++T TLSRYENQKRRDWNTFGQYLRNHRPPLSL RCSGAHVLEFLRYLDQFGKTKVH+
Sbjct: 44  PATNTNTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHS 103

Query: 108 QLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLRE 167
           Q+CPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE+GGKPE NPFGARAVRL+LRE
Sbjct: 104 QICPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEDNPFGARAVRLFLRE 163

Query: 168 VRDSQAKARGISYEKKKRKR 187
           VRDSQ+KARGISYEKKKRKR
Sbjct: 164 VRDSQSKARGISYEKKKRKR 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112577|ref|XP_002332747.1| predicted protein [Populus trichocarpa] gi|222833075|gb|EEE71552.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 134/137 (97%), Positives = 135/137 (98%)

Query: 53  TTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPF 112
           +TLSRYENQKRRDWNTFGQYLRNHRPPLSL RCSGAHVLEFLRYLDQFGKTKVHTQLCPF
Sbjct: 2   STLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTQLCPF 61

Query: 113 FGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQ 172
           FGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPE NPFGARAVRLYLREVRDSQ
Sbjct: 62  FGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPENNPFGARAVRLYLREVRDSQ 121

Query: 173 AKARGISYEKKKRKRPP 189
           AKARGISYEKKKRKRPP
Sbjct: 122 AKARGISYEKKKRKRPP 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488802|gb|ABK96211.1| unknown [Populus trichocarpa]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 148/191 (77%), Positives = 164/191 (85%), Gaps = 6/191 (3%)

Query: 17  NTPSCTPTATLTITTSSGAAGAVAAATSSPSPSSSTTTLSRYENQKRRDWNTFGQYLRNH 76
           N+ +  P  TL + T++ A+ + +++ ++   ++S TTLSRYENQKRRDWNTFGQYLRNH
Sbjct: 8   NSAATNPIITLPLATTNTASPSSSSSITT---TTSPTTLSRYENQKRRDWNTFGQYLRNH 64

Query: 77  RPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDAL 136
           RPPLSL RCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDAL
Sbjct: 65  RPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDAL 124

Query: 137 IGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQQPQP-- 194
           IGRLRAAFEEHGGKPE NPFGARAVRLYLREVRDSQ+KARGISYEKKKRKRPPQQ  P  
Sbjct: 125 IGRLRAAFEEHGGKPENNPFGARAVRLYLREVRDSQSKARGISYEKKKRKRPPQQQNPAS 184

Query: 195 -QPQPTPPNAT 204
             P   PP +T
Sbjct: 185 LMPPQAPPEST 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486110|gb|ABK94898.1| unknown [Populus trichocarpa]

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 137/178 (76%), Positives = 148/178 (83%), Gaps = 2/178 (1%)

Query: 14  ISNNTPSCTPTATLTITTSSGAAGAVAAATSSPSPSSSTTTLSRYENQKRRDWNTFGQYL 73
           I     S +   +     +S       + ++ P PSS  TT SRYENQKRRDWNTFGQYL
Sbjct: 4   IQEMESSNSENTSFNSIGNSNTTNTAMSVSNLPPPSS--TTPSRYENQKRRDWNTFGQYL 61

Query: 74  RNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSL 133
           +NHRPPLSL RCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPCPCPLRQAWGSL
Sbjct: 62  KNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSL 121

Query: 134 DALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPQQ 191
           DALIGRLRAAFEE+GGKPEANPFGARAVRLYLREVRD Q+KARGISYEKKKRKRPPQQ
Sbjct: 122 DALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPQQ 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441159|ref|XP_003590857.1| hypothetical protein MTR_1g075990, partial [Medicago truncatula] gi|355479905|gb|AES61108.1| hypothetical protein MTR_1g075990, partial [Medicago truncatula]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/140 (92%), Positives = 137/140 (97%)

Query: 48  PSSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHT 107
           P+++T TLSRYENQKRRDWNTFGQYLRNHRPPLSL RCSGAHVLEFLRYLDQFGKTKVH+
Sbjct: 44  PATNTNTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHS 103

Query: 108 QLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLRE 167
           Q+CPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE+GGKPE NPFGARAVRL+LRE
Sbjct: 104 QICPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEDNPFGARAVRLFLRE 163

Query: 168 VRDSQAKARGISYEKKKRKR 187
           VRDSQ+KARGISYEKKKRKR
Sbjct: 164 VRDSQSKARGISYEKKKRKR 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270309068|dbj|BAI52974.1| G1-like protein [Selaginella moellendorffii]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/165 (75%), Positives = 137/165 (83%), Gaps = 3/165 (1%)

Query: 27  LTITTSSGAAGAVAAATSSPSPSSSTTTL---SRYENQKRRDWNTFGQYLRNHRPPLSLE 83
           L    S+G      A+TS    ++S++     SRYE QKRRDWNTFGQYL+NHRPPL+L 
Sbjct: 4   LLPDESNGEVAGGGASTSRADANASSSQQAPPSRYEAQKRRDWNTFGQYLKNHRPPLALS 63

Query: 84  RCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAA 143
           RCSGAHVLEFLRYLDQFGKTK+H   CPFFG  +PPAPC CPLRQAWGSLDALIGRLRAA
Sbjct: 64  RCSGAHVLEFLRYLDQFGKTKIHAPACPFFGLAHPPAPCACPLRQAWGSLDALIGRLRAA 123

Query: 144 FEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 188
           FEEHGGKPE+NPFGARAVRLYLREVR+ QAKARGI+YEKKKRKRP
Sbjct: 124 FEEHGGKPESNPFGARAVRLYLREVREMQAKARGIAYEKKKRKRP 168

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302783941|ref|XP_002973743.1| hypothetical protein SELMODRAFT_36560 [Selaginella moellendorffii] gi|302788045|ref|XP_002975792.1| hypothetical protein SELMODRAFT_36559 [Selaginella moellendorffii] gi|300156793|gb|EFJ23421.1| hypothetical protein SELMODRAFT_36559 [Selaginella moellendorffii] gi|300158781|gb|EFJ25403.1| hypothetical protein SELMODRAFT_36560 [Selaginella moellendorffii]

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 121/152 (79%), Positives = 131/152 (86%)

Query: 37  GAVAAATSSPSPSSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRY 96
           GA  +   + + SS     SRYE QKRRDWNTFGQYL+NHRPPL+L RCSGAHVLEFLRY
Sbjct: 2   GASTSRADANASSSQQAPPSRYEAQKRRDWNTFGQYLKNHRPPLALSRCSGAHVLEFLRY 61

Query: 97  LDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPF 156
           LDQFGKTK+H   CPFFG  +PPAPC CPLRQAWGSLDALIGRLRAAFEEHGGKPE+NPF
Sbjct: 62  LDQFGKTKIHAPACPFFGLAHPPAPCACPLRQAWGSLDALIGRLRAAFEEHGGKPESNPF 121

Query: 157 GARAVRLYLREVRDSQAKARGISYEKKKRKRP 188
           GARAVRLYLREVR+ QAKARGI+YEKKKRKRP
Sbjct: 122 GARAVRLYLREVREMQAKARGIAYEKKKRKRP 153

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2082170	195	LSH4 "LIGHT SENSITIVE HYPOCOTY	0.639	0.671	0.839	3.4e-54
TAIR|locus:2055897	219	LSH3 "AT2G31160" [Arabidopsis	0.639	0.598	0.816	1.9e-53
TAIR|locus:2147494	190	LSH1 "AT5G28490" [Arabidopsis	0.634	0.684	0.761	1.4e-48
TAIR|locus:2007382	196	LSH6 "AT1G07090" [Arabidopsis	0.639	0.668	0.717	1.2e-47
TAIR|locus:2100850	201	LSH2 "AT3G04510" [Arabidopsis	0.634	0.646	0.707	6.2e-46
TAIR|locus:2171263	182	LSH5 "AT5G58500" [Arabidopsis	0.639	0.719	0.712	1.3e-45
TAIR|locus:2041514	177	LSH10 "AT2G42610" [Arabidopsis	0.639	0.740	0.656	1.5e-42
TAIR|locus:505006228	195	LSH7 "AT1G78815" [Arabidopsis	0.639	0.671	0.603	3.3e-40
TAIR|locus:2124067	191	LSH9 "AT4G18610" [Arabidopsis	0.639	0.685	0.613	1.6e-38
TAIR|locus:2015591	164	LSH8 "AT1G16910" [Arabidopsis	0.629	0.786	0.573	2.2e-34

TAIR|locus:2082170 LSH4 "LIGHT SENSITIVE HYPOCOTYLS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 110/131 (83%), Positives = 111/131 (84%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYENQKRRDWNTFGQYLRNHRPPLSL RCSGAHVLEFLRYLDQFGKTKVHT L       
Sbjct:    48 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP 107

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKAR 176
                      LRQAWGSLDALIGRLRAAFEE+GG PE NPFGARAVRLYLREVRDSQAKAR
Sbjct:   108 NPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKAR 167

Query:   177 GISYEKKKRKR 187
             GISYEKKKRKR
Sbjct:   168 GISYEKKKRKR 178

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2055897 LSH3 "AT2G31160" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 107/131 (81%), Positives = 111/131 (84%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYENQKRRDWNTFGQYLRNHRPPLSL RCSGAHVLEFLRYLDQFGKTKVHT +       
Sbjct:    54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHP 113

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKAR 176
                      LRQAWGSLDALIGRLRAAFEE+GGKPE NPFGARAVRLYLREVRD Q+KAR
Sbjct:   114 NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKAR 173

Query:   177 GISYEKKKRKR 187
             G+SYEKKKRKR
Sbjct:   174 GVSYEKKKRKR 184

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2147494 LSH1 "AT5G28490" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 99/130 (76%), Positives = 107/130 (82%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYENQKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKTKVH Q        
Sbjct:    25 RYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLP 84

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKAR 176
                      LRQAWGSLDALIGRLRAA+EE+GG PEANPFG+RAVRL+LREVRD QAKAR
Sbjct:    85 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKAR 144

Query:   177 GISYEKKKRK 186
             G+SYEKK+++
Sbjct:   145 GVSYEKKRKR 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009637 "response to blue light" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010114 "response to red light" evidence=IGI

GO:0010218 "response to far red light" evidence=IGI

TAIR|locus:2007382 LSH6 "AT1G07090" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 94/131 (71%), Positives = 108/131 (82%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYE+QKRRDWNTF QYL+NH+PPL+L RCSGAHV+EFL+YLDQFGKTKVH          
Sbjct:    31 RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQ 90

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKAR 176
                      L+QAWGSLDALIGRLRAA+EE+GG+P++NPF ARAVR+YLREVR+SQAKAR
Sbjct:    91 QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKAR 150

Query:   177 GISYEKKKRKR 187
             GI YEKKKRKR
Sbjct:   151 GIPYEKKKRKR 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2100850 LSH2 "AT3G04510" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 92/130 (70%), Positives = 105/130 (80%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYENQKRRDWNTF QYLRNH PPLSL  CSGAHVL+FLRYLDQFGKTKVH Q        
Sbjct:    33 RYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLP 92

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKAR 176
                      LRQAWGSLDALIGRLRAA+EE+GG PE +PFG+R+VR++LREVRD QAK+R
Sbjct:    93 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSR 152

Query:   177 GISYEKKKRK 186
             G+SYEKK+++
Sbjct:   153 GVSYEKKRKR 162

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171263 LSH5 "AT5G58500" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 94/132 (71%), Positives = 105/132 (79%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYE+QKRRDWNTF QYLRNH+PPL+L RCSGAHVLEFL+YLDQFGKTKVH          
Sbjct:    19 RYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQP 78

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEE-HGGKPEANPFGARAVRLYLREVRDSQAKA 175
                      L+QAWGSLDALIGRLRAAFEE  GG PE+NPF A+AVR+YL+EVR +QAKA
Sbjct:    79 NPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAKA 138

Query:   176 RGISYEKKKRKR 187
             RGI Y+KKKRKR
Sbjct:   139 RGIPYDKKKRKR 150

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041514 LSH10 "AT2G42610" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 86/131 (65%), Positives = 100/131 (76%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYE+QKRRDWNTFGQYL+N RPP+ +  CS  HVL+FLRYLDQFGKTKVH          
Sbjct:    25 RYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQP 84

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKAR 176
                      LRQAWGSLDALIGRLRAA+EE+GG PE NPF + A+R+YLREVR+ QAKAR
Sbjct:    85 EPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKAR 144

Query:   177 GISYEKKKRKR 187
             GI Y+KKK+K+
Sbjct:   145 GIPYKKKKKKK 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006228 LSH7 "AT1G78815" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 79/131 (60%), Positives = 98/131 (74%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYE+QKRRDWNTF QYLRN +PP+ + +C   H+L+FL+YLDQFGKTKVH          
Sbjct:    40 RYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQV 99

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKAR 176
                      L+QAWGSLDALIGRLRAAFEE+GG PE NPF    +R++LREVRDSQAKAR
Sbjct:   100 EPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKAR 159

Query:   177 GISYEKKKRKR 187
             G+ Y+K+K+++
Sbjct:   160 GVPYKKRKKRK 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2124067 LSH9 "AT4G18610" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 81/132 (61%), Positives = 96/132 (72%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYE+QKRRDWNTF QYL++  PPL + +    HVL FLRYLDQFGKTKVH Q        
Sbjct:    37 RYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFGQP 96

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEEHGG-KPEANPFGARAVRLYLREVRDSQAKA 175
                      L+QAWGSLDALIGRLRAA+EEHGG  P+ NPF   ++R++LREVR+SQAKA
Sbjct:    97 DPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQAKA 156

Query:   176 RGISYEKKKRKR 187
             RGI Y KKKR++
Sbjct:   157 RGIPYRKKKRRK 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2015591 LSH8 "AT1G16910" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 74/129 (57%), Positives = 88/129 (68%)

Query:    57 RYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLXXXXXXX 116
             RYE+QK RDWNTF QYL    PP+ +  C   H+L+FL+  DQFGKTKVH Q        
Sbjct:    23 RYESQKSRDWNTFCQYLMTKMPPVHVWECESNHILDFLQSRDQFGKTKVHIQGCVFFGQK 82

Query:   117 XXXXXXXXXLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDSQAKAR 176
                      L+QAWGSLDALIGRLRAA+EE+GG  E NPF    +R++LREVR SQAKAR
Sbjct:    83 EPPGECNCPLKQAWGSLDALIGRLRAAYEENGGLTEKNPFARGGIRIFLREVRGSQAKAR 142

Query:   177 GISYEKKKR 185
             G+ Y+KKKR
Sbjct:   143 GVLYKKKKR 151

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002224001 SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (195 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam04852	133	pfam04852, DUF640, Protein of unknown function (DU	8e-75

>gnl|CDD|191112 pfam04852, DUF640, Protein of unknown function (DUF640)

 Score =  221 bits (564), Expect = 8e-75
 Identities = 106/129 (82%), Positives = 111/129 (86%)

Query: 43  TSSPSPSSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGK 102
           TS  S  S    LSRYE+QKRRDWNTF QYLRN RPPL+L +CSG HVL+FLRYLDQFGK
Sbjct: 5   TSECSSRSPPPALSRYESQKRRDWNTFCQYLRNQRPPLNLSKCSGNHVLDFLRYLDQFGK 64

Query: 103 TKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGKPEANPFGARAVR 162
           TKVH Q C FFGHP+PPAPCPCPLRQAWGSLDALIGRLRAAFEEHGG PE NPF ARAVR
Sbjct: 65  TKVHGQACGFFGHPSPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGHPEENPFAARAVR 124

Query: 163 LYLREVRDS 171
           LYLREVRDS
Sbjct: 125 LYLREVRDS 133

This family represents a conserved region found in plant proteins including Resistance protein-like protein. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF04852	132	DUF640: Protein of unknown function (DUF640); Inte	100.0
PF08821	107	CGGC: CGGC domain; InterPro: IPR014925 Proteins in	90.96
PF02899	84	Phage_int_SAM_1: Phage integrase, N-terminal SAM-l	90.01
cd00798	284	INT_XerDC XerD and XerC integrases, DNA breaking-r	86.85
cd00799	287	INT_Cre Cre recombinase, C-terminal catalytic doma	85.45
TIGR02225	291	recomb_XerD tyrosine recombinase XerD. The phage i	83.26
PRK00283	299	xerD site-specific tyrosine recombinase XerD; Revi	81.86
COG1080	574	PtsA Phosphoenolpyruvate-protein kinase (PTS syste	80.55

>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT)

Probab=100.00  E-value=7.9e-76  Score=471.47  Aligned_cols=123  Identities=89%  Similarity=1.517  Sum_probs=119.5

Q ss_pred             CCCCCCCchHHHhhhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhh
Q 037966           49 SSSTTTLSRYENQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQ  128 (205)
Q Consensus        49 ~~~~~~~SrYesQKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQ  128 (205)
                      .++++.+||||+|||||||||+|||+||+|||+|++|+++|||+||+|||||||||||.++|+|||+|+||+||+|||||
T Consensus        10 ~~~~~~~SrYesQKrrdwntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~GkTkVh~~~C~~~g~~~~p~~C~CPlrq   89 (132)
T PF04852_consen   10 RSPQPAPSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGKTKVHGQGCPFFGHPSPPAPCPCPLRQ   89 (132)
T ss_pred             CCCCCCCcccchhhhHHHHHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCCeeecCCCCCCCCCCCCCCCCCCcHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Q 037966          129 AWGSLDALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRDS  171 (205)
Q Consensus       129 AWGSLDALIGRLRAafEE~Gg~PE~NPF~araVRlYLReVRd~  171 (205)
                      |||||||||||||||||||||+||+|||+++|||+|||||||+
T Consensus        90 AwGSlDalIGrLraafee~Gg~pe~NPf~~~~vr~yLr~vr~~  132 (132)
T PF04852_consen   90 AWGSLDALIGRLRAAFEEHGGHPEANPFAARAVRLYLREVRDS  132 (132)
T ss_pred             HhccHHHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999985

>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region

Probab=90.96  E-value=0.41  Score=37.29  Aligned_cols=67  Identities=22%  Similarity=0.528  Sum_probs=49.7

Q ss_pred             HHHHHHHhcCCCCcccccc---chhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 037966           68 TFGQYLRNHRPPLSLERCS---GAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF  144 (205)
Q Consensus        68 tf~qyL~n~rPPlsL~~cs---g~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAaf  144 (205)
                      .|.+|=.+..--+.+.+|.   +..|+..++.+-..|-..||...|.+.+.+.+    +||.      +|.|+-.|+++|
T Consensus        29 ~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~----~CP~------~~~~~~~I~~~~   98 (107)
T PF08821_consen   29 AFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG----PCPH------IDEIKKIIEEKF   98 (107)
T ss_pred             ccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC----CCCC------HHHHHHHHHHHh
Confidence            3444443222234444554   58899999999999999999999999987654    6666      899999999888

The region has many conserved cysteines and histidines suggestive of a zinc binding function.

>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]

Probab=90.01  E-value=0.53  Score=31.82  Aligned_cols=40  Identities=30%  Similarity=0.487  Sum_probs=31.8

Q ss_pred             hhhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccC
Q 037966           61 QKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFG  101 (205)
Q Consensus        61 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfG  101 (205)
                      .-+++++.|.+||.+ ....++..++..||.+|+.++-+.|
T Consensus        21 ~Y~~~l~~f~~~~~~-~~~~~~~~i~~~~v~~f~~~~~~~~   60 (84)
T PF02899_consen   21 SYRRDLRRFIRWLEE-HGIIDWEDITEEDVRDFLEYLAKEG   60 (84)
T ss_dssp             HHHHHHHHHHHHHHH-TTS-CGGG--HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhh-hhhhhhhhhhhHHHHHHHHHHHccC
Confidence            446789999999999 6667788999999999999998766

The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.

>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains

Probab=86.85  E-value=2.6  Score=32.64  Aligned_cols=69  Identities=25%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             hhhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHH
Q 037966           61 QKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRL  140 (205)
Q Consensus        61 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRL  140 (205)
                      +-+..|+.|.+|+....... +..-+..||.+|+.++.+.|                          ....++...++-|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l   73 (284)
T cd00798          21 AYRRDLERFLEFLEERGILF-PADVTPDDIRRFLAELKDQG--------------------------LSARSIARKLSAL   73 (284)
T ss_pred             HHHHHHHHHHHHHHHcCCCc-hhhCCHHHHHHHHHHhhhcC--------------------------CCHHHHHHHHHHH
Confidence            44567899999998754433 56677899999999887644                          1235777778888


Q ss_pred             HHHHHHhC--CCCCCCcc
Q 037966          141 RAAFEEHG--GKPEANPF  156 (205)
Q Consensus       141 RAafEE~G--g~PE~NPF  156 (205)
                      +++|.-..  +--+.||+
T Consensus        74 ~~~~~~~~~~~~~~~~p~   91 (284)
T cd00798          74 RSFFKFLLREGLILANPA   91 (284)
T ss_pred             HHHHHHHHHcCCccCChh
Confidence            88876322  33456777

XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid inheritance. They share the same fold in their catalytic domain containing six conserved active site residues and the overall reaction mechanism with the DNA breaking-rejoining enzyme superfamily. In Escherichia coli, the Xer site-specific recombination system acts to convert dimeric chromosomes, which are formed by homologous recombination to monomers. Two related recombinases, XerC and XerD, bind cooperatively to a recombination site present in the E. coli chromosome. Each recombinase catalyzes the exchange of one pair of DNA strand in a reaction that proceeds through a Holliday junction intermediate. These enzymes can bridge two different and well-separated DNA sequen

>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain

Probab=85.45  E-value=7.5  Score=31.46  Aligned_cols=77  Identities=23%  Similarity=0.304  Sum_probs=52.4

Q ss_pred             hhhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHH
Q 037966           61 QKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRL  140 (205)
Q Consensus        61 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRL  140 (205)
                      .-..+++.|.+|+..+-  +....-+..+|.+|+.||.+.                           .+..++-..++.|
T Consensus         6 ~y~~~l~~f~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~---------------------------~s~~ti~~~~~~l   56 (287)
T cd00799           6 AYLSDWRRFAAWCQAHG--RTPLPASPETVTLYLTDLADS---------------------------LAPSTISRRLSAL   56 (287)
T ss_pred             HHHHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHHhc---------------------------cChHHHHHHHHHH
Confidence            44568889999998752  222223589999999988531                           1456888899999


Q ss_pred             HHHHHHhCCCCCCCcchhhHHHHHHHHHH
Q 037966          141 RAAFEEHGGKPEANPFGARAVRLYLREVR  169 (205)
Q Consensus       141 RAafEE~Gg~PE~NPF~araVRlYLReVR  169 (205)
                      +.+|+..+.   .||+....++.-|+.++
T Consensus        57 ~~~~~~~~~---~~p~~~~~~~~~~~~~~   82 (287)
T cd00799          57 SQLHRRSGL---PSPADSPLVRLVLRGIR   82 (287)
T ss_pred             HHHHHHcCC---CCCccCHHHHHHHHHHH
Confidence            999985443   57876555555555554

Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.

>TIGR02225 recomb_XerD tyrosine recombinase XerD

Probab=83.26  E-value=4.7  Score=31.57  Aligned_cols=70  Identities=24%  Similarity=0.411  Sum_probs=47.7

Q ss_pred             HhhhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHH
Q 037966           60 NQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGR  139 (205)
Q Consensus        60 sQKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGR  139 (205)
                      .+-+..++.|.+|+....  ..+..-+..||.+|+.++.+.|                          .+.-+++..+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~--~~~~~it~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~   70 (291)
T TIGR02225        19 EAYRRDLEKFLEFLEERG--IDLEEVDRGDIVDFLAELKEAG--------------------------LSARSIARALSA   70 (291)
T ss_pred             HHHHHHHHHHHHHHHhcC--CChHHCCHHHHHHHHHHhhcCC--------------------------CCHhHHHHHHHH
Confidence            445567788999988542  2455667899999999887644                          122367888999


Q ss_pred             HHHHHHHh--CCCCCCCcch
Q 037966          140 LRAAFEEH--GGKPEANPFG  157 (205)
Q Consensus       140 LRAafEE~--Gg~PE~NPF~  157 (205)
                      |+++|+-.  -+--+.|||.
T Consensus        71 l~~~~~~a~~~~~~~~np~~   90 (291)
T TIGR02225        71 LRSFYRFLLREGIREDDPSA   90 (291)
T ss_pred             HHHHHHHHHhcccccCCchh
Confidence            99998732  2334568863

The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK.

>PRK00283 xerD site-specific tyrosine recombinase XerD; Reviewed

Probab=81.86  E-value=3.9  Score=32.62  Aligned_cols=68  Identities=26%  Similarity=0.288  Sum_probs=47.5

Q ss_pred             hhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 037966           62 KRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLR  141 (205)
Q Consensus        62 KRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLR  141 (205)
                      -+++|+.|..||..+.-  .+...+..||.+|+.++.+.|                          .+-.++...+..|+
T Consensus        30 ~~~~~~~~~~~~~~~~~--~~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l~   81 (299)
T PRK00283         30 YRRDLELFAEWLAARGL--SLAEATRDDLQAFLAELAEGG--------------------------YKATSSARRLSALR   81 (299)
T ss_pred             HHHHHHHHHHHHHhcCC--ChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence            45688899999986532  566778999999999885532                          23357778888888


Q ss_pred             HHHHHhC--CCCCCCcch
Q 037966          142 AAFEEHG--GKPEANPFG  157 (205)
Q Consensus       142 AafEE~G--g~PE~NPF~  157 (205)
                      ++|+-..  +--+.|||.
T Consensus        82 ~~~~~a~~~~~i~~np~~   99 (299)
T PRK00283         82 RFFQFLLREGLREDDPSA   99 (299)
T ss_pred             HHHHHHHHcCCcccCchh
Confidence            8887331  234468863

>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]

Probab=80.55  E-value=2  Score=42.54  Aligned_cols=41  Identities=44%  Similarity=0.698  Sum_probs=32.9

Q ss_pred             hhhcchhHHHHHHHHHHHHHhCCC--------------------C-CCCcc-hhhHHHHHHHH
Q 037966          127 RQAWGSLDALIGRLRAAFEEHGGK--------------------P-EANPF-GARAVRLYLRE  167 (205)
Q Consensus       127 RQAWGSLDALIGRLRAafEE~Gg~--------------------P-E~NPF-~araVRlYLRe  167 (205)
                      |+.|=+.|..----++..|.+||+                    | |.||| |-|+||+||..
T Consensus       305 r~~~P~EeEQ~~aY~~vlea~~g~pviiRTlDiGGDK~lpyl~lp~E~NPfLG~RaIRl~l~~  367 (574)
T COG1080         305 RDALPDEEEQFEAYKAVLEAMGGKPVIIRTLDIGGDKPLPYLNLPKEENPFLGYRAIRLSLER  367 (574)
T ss_pred             CCCCCChHHHHHHHHHHHHHcCCCceEEEecccCCCCcCCCCCCccccCchhhhHHHHHhhcc
Confidence            345556777777788888998887                    3 79999 89999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
1xo0_A	324	Recombinase CRE; CRE recombinase, holliday junctio	91.8
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	85.87
1a0p_A	290	Site-specific recombinase XERD; DNA binding, DNA r	80.69

>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...

Probab=91.80  E-value=0.45  Score=36.45  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=53.2

Q ss_pred             HhhhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHH
Q 037966           60 NQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGR  139 (205)
Q Consensus        60 sQKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGR  139 (205)
                      .+-+++|+.|..|+....  +.+...+..||.+|+.++-+.|                          .+..++...+..
T Consensus        24 ~~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~   75 (324)
T 1xo0_A           24 KMLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQ   75 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHH
Confidence            344678899999998763  2456678999999999875322                          245688999999


Q ss_pred             HHHHHHHhCCC-CCCCcchhh
Q 037966          140 LRAAFEEHGGK-PEANPFGAR  159 (205)
Q Consensus       140 LRAafEE~Gg~-PE~NPF~ar  159 (205)
                      |++.|+-.+.. +..||+..-
T Consensus        76 l~~~~~~~~~~~~~~np~~~~   96 (324)
T 1xo0_A           76 LNMLHRRSGLPRPSDSNAVSL   96 (324)
T ss_dssp             HHHHHHHHTSCCGGGSHHHHH
T ss_pred             HHHHHHHcCCCCCCcCHHHHH
Confidence            99999988653 356887543

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=85.87  E-value=2.9  Score=28.85  Aligned_cols=69  Identities=10%  Similarity=0.058  Sum_probs=47.0

Q ss_pred             hhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 037966           62 KRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLR  141 (205)
Q Consensus        62 KRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLR  141 (205)
                      -+++++.|..||.... -..+...+..||.+|+.|+-..|                          .+..|+-..+.-||
T Consensus        32 Y~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr   84 (117)
T 3nrw_A           32 FRYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLK   84 (117)
T ss_dssp             HHHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence            3567888889987632 12566778899999998874321                          24457778888888


Q ss_pred             HHHHHh--CCCCCCCcch
Q 037966          142 AAFEEH--GGKPEANPFG  157 (205)
Q Consensus       142 AafEE~--Gg~PE~NPF~  157 (205)
                      +.|.-.  -|--+.||+.
T Consensus        85 ~f~~~l~~~g~i~~nP~~  102 (117)
T 3nrw_A           85 NWLEYLARIDVVDEDLPE  102 (117)
T ss_dssp             HHHHHHHHTTSSCTTSGG
T ss_pred             HHHHHHHHcCCcccCHHH
Confidence            887643  2445678874

>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1

Probab=80.69  E-value=3.9  Score=30.75  Aligned_cols=70  Identities=20%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             HhhhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHH
Q 037966           60 NQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGR  139 (205)
Q Consensus        60 sQKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGR  139 (205)
                      ..-++.++.|..|+...  .+.+..-+..||.+|+.++-..                          ..+..++...+.-
T Consensus        25 ~~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~   76 (290)
T 1a0p_A           25 NAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSA   76 (290)
T ss_dssp             HHHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHH
Confidence            34456788899999887  3467778899999999876421                          1245678888999


Q ss_pred             HHHHHHHhC--CCCCCCcch
Q 037966          140 LRAAFEEHG--GKPEANPFG  157 (205)
Q Consensus       140 LRAafEE~G--g~PE~NPF~  157 (205)
                      |+++|+..-  +..+.|||.
T Consensus        77 l~~~~~~~~~~~~i~~np~~   96 (290)
T 1a0p_A           77 VRRLFQYLYREKFREDDPSA   96 (290)
T ss_dssp             HHHHHHHHHHTTSSSSCTTS
T ss_pred             HHHHHHHHHhCCCccCChhh
Confidence            999987542  345678985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1f44a1	110	Cre recombinase {Bacteriophage P1 [TaxId: 10678]}	97.69

>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Cre recombinase
species: Bacteriophage P1 [TaxId: 10678]

Probab=97.69  E-value=0.0001  Score=52.12  Aligned_cols=81  Identities=19%  Similarity=0.296  Sum_probs=66.4

Q ss_pred             hhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 037966           63 RRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRA  142 (205)
Q Consensus        63 RrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRA  142 (205)
                      ++||+.|.+|+.++.-  +...++..+|.+||.+|-.-|                          .+..|+.--|--||.
T Consensus        27 ~~dl~~f~~w~~~~~~--~~l~~~~~~v~~yl~~l~~~g--------------------------~s~sTi~R~lsair~   78 (110)
T d1f44a1          27 LSVCRSWAAWCKLNNR--KWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQLNM   78 (110)
T ss_dssp             HHHHHHHHHHHHHTTC--CTTTTCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc--cccchhhhHHHHHHHHHHhcC--------------------------CCccHHHHHHHHHHH
Confidence            6799999999998864  455689999999999885533                          345688999999999


Q ss_pred             HHHHhCCCCCCCcchhhHHHHHHHHHHHHHhh
Q 037966          143 AFEEHGGKPEANPFGARAVRLYLREVRDSQAK  174 (205)
Q Consensus       143 afEE~Gg~PE~NPF~araVRlYLReVRd~QAk  174 (205)
                      .|...|-.   +|+.+..|++.|+-+|-..++
T Consensus        79 f~r~~g~~---~p~~~~~V~~~l~~i~R~~~~  107 (110)
T d1f44a1          79 LHRRSGLP---RPSDSNAVSLVMRRIRKENVD  107 (110)
T ss_dssp             HHHHTTCC---CGGGSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCC---CCcCCHHHHHHHHHccccccC
Confidence            99988753   799999999999988876654