Citrus Sinensis ID: 037998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSAASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINETPHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPPPAVHPSLTETTSVSNPGDASSTSSYGGGTSSPYIWPELYFEDPIMQEIS
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHc
Coil and Loop (DISEMBL)
mgrppccdenglkkgpwtpeeDQKLVEFIQKHghgswralpklaglnrcgkscrlrwtnylrpdikrgkfsqdeEQTILHLHSILGNKWSAiathlpgrtdneIKNFWNTHLKKKLIQmgidpmthqprtdifaSLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSAaslntttpygqngitdmeafnltnsidpdssketpenINSAAAALFSQHlgninetphhsqplhypnplshfpdpqvpfsfqtslnnnemgpcsnsftmvsqdanypadcswilpspppavhpsltettsvsnpgdasstssygggtsspyiwpelyfedpimqeis
Flexible Loop (DISEMBL)
mgrppccdenglkkgpwtpeEDQKLVEFIQKHghgswralpklaglnrcgkscRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSAASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINETPHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPPPAVHPSLTettsvsnpgdasstssygggtsspyiWPELYFEDPIMQEIS
Low Complexity Region (SEG)
MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSAASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINETPHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPPPAVHPSLTETTSVSNPGDAsstssygggtssPYIWPELYFEDPIMQEIS
Disordered region (IsUnstruct)
***********************KLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSAASLNTTTPYGQNGITDMEAF*****************************************************************************************C*W*******************************************************
Disordered Region (DISOPRED)
*GRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGID****************************************************************************************************************************************************************************************************************PYIWPELYFEDPIMQE**
Disordered Region (DISEMBL)
MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSAASLNTTTPYGQNGITDMEAFNLTNSID*********NINSAAAALFSQHLGNINETPHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPPPAVH************************TSSPYIWPELYFEDPIMQEIS
Disordered Region (DISPRO)
****PCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSAA***********GITDMEAFNLTNSIDP******************************HSQP*H****LS*****QVPF*F****************************C*W************************************SPYIWPELYFEDPIMQEIS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSAASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINETPHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPPPAVHPSLTETTSVSNPGDASSTSSYGGGTSSPYIWPELYFEDPIMQEIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q8GWP0	360	Transcription factor MYB3	no	no	0.508	0.491	0.591	3e-60
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.367	0.435	0.710	9e-54
Q9SPG2	366	Transcription factor MYB2	no	no	0.367	0.349	0.679	4e-53
Q8LPH6	352	Transcription factor MYB8	no	no	0.367	0.363	0.695	7e-53
Q7XBH4	257	Myb-related protein Myb4	no	no	0.333	0.451	0.775	1e-52
Q9FLR1	336	Transcription factor MYB2	no	no	0.367	0.380	0.687	2e-52
Q38851	236	Transcription repressor M	no	no	0.364	0.538	0.685	9e-52
O49608	274	Transcription factor MYB3	no	no	0.367	0.467	0.664	3e-51
Q9S9K9	257	Transcription factor MYB3	no	no	0.364	0.494	0.661	4e-51
P80073	421	Myb-related protein Pp2 O	N/A	no	0.376	0.311	0.687	4e-51

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  232 bits (592), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 107/181 (59%), Positives = 136/181 (75%), Gaps = 4/181 (2%)

Query: 1   MGRPPCCDEN-GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTN 59
           MGR PCCD++ G+KKGPW PEED KL  +I ++G+G+WR+LPKLAGLNRCGKSCRLRW N
Sbjct: 1   MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query: 60  YLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQM 119
           YLRPDI+RGKFS  EE TI+ LH++LGNKWS IA HLPGRTDNEIKN+WNTH++KKL+QM
Sbjct: 61  YLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQM 120

Query: 120 GIDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQ-LAKIQYLQHLL 178
           GIDP+TH+PRT+  +  P L     L   + N Q     +     A++ + K+Q +  +L
Sbjct: 121 GIDPVTHEPRTNDLS--PILDVSQMLAAAINNGQFGNNNLLNNNTALEDILKLQLIHKML 178

Query: 179 H 179
            
Sbjct: 179 Q 179

Arabidopsis thaliana (taxid: 3702)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  211 bits (536), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 91/128 (71%), Positives = 107/128 (83%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCD+ G+KKGPWT EED+KL+ FI  +G   WRA+PKLAGL RCGKSCRLRWTNY
Sbjct: 1   MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPD+KRG  S  EE+ ++ LHS LGN+WS IA  LPGRTDNEIKN WNTH+KKKL++MG
Sbjct: 61  LRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMG 120

Query: 121 IDPMTHQP 128
           IDP+TH+P
Sbjct: 121 IDPVTHEP 128

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  208 bits (530), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 104/128 (81%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           M R PCC   GLKKG WT EED+KL+ +I  HG G WR +P+ AGL RCGKSCRLRWTNY
Sbjct: 1   MSRKPCCVGEGLKKGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           L+P+IKRG+FS +EEQ I+ LH+  GNKWS IA HLP RTDNEIKN+WNTHLKK+L++ G
Sbjct: 61  LKPEIKRGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQG 120

Query: 121 IDPMTHQP 128
           IDP+TH+P
Sbjct: 121 IDPVTHKP 128

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  207 bits (528), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 105/128 (82%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR  CC +  L+KG W+PEED+KL+ +I +HGHG W ++PKLAGL RCGKSCRLRW NY
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPD+KRG FSQDEE  I+ LH+ LGN+WS IAT LPGRTDNEIKNFWN+ LKKKL + G
Sbjct: 61  LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKG 120

Query: 121 IDPMTHQP 128
           IDP TH+P
Sbjct: 121 IDPTTHKP 128

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 90/116 (77%), Positives = 102/116 (87%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCC++ GLKKGPWTPEED+ LV  IQ+HGHG+WRALPK AGL RCGKSCRLRW NY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           LRPDIKRG FS++EE TI+HLH +LGN+WSAIA  LPGRTDNEIKN W+THLKK+L
Sbjct: 61  LRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FLR1|MYB29_ARATH Transcription factor MYB29 OS=Arabidopsis thaliana GN=MYB29 PE=1 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 102/128 (79%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           M R PCC   GLKKG WT EED+KL+ +I +HG G WR +P+ AGL RCGKSCRLRW NY
Sbjct: 1   MSRKPCCVGEGLKKGAWTAEEDKKLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWANY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           L+PDIKRG+FS +EEQ I+ LH+  GNKWS IA HLP RTDNEIKN+WNTHLKK LI  G
Sbjct: 61  LKPDIKRGEFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEIKNYWNTHLKKLLIDKG 120

Query: 121 IDPMTHQP 128
           IDP+TH+P
Sbjct: 121 IDPVTHKP 128

Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  204 bits (519), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 104/127 (81%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCC++    KG WT EEDQ+LV++I+ HG G WR+LPK AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPD+KRG F+ DE+Q I+ LHS+LGNKWS IA  LPGRTDNEIKN+WNTH+K+KL+  G
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query: 121 IDPMTHQ 127
           IDP TH+
Sbjct: 121 IDPQTHR 127

Arabidopsis thaliana (taxid: 3702)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  202 bits (513), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 105/128 (82%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCC+++   KG WT EED KL+ +I+ HG G WR+LP+ AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPD+KRG F+ +E+  I+ LHS+LGNKWS IAT LPGRTDNEIKN+WNTH+K+KL++ G
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query: 121 IDPMTHQP 128
           IDP TH+P
Sbjct: 121 IDPATHRP 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  202 bits (513), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 106/127 (83%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCC++  + KG WT EEDQ LV++I+KHG G WR+LP+ AGL RCGKSCRLRW NY
Sbjct: 1   MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPD+KRG F+++E++ I+ LHS+LGNKWS IA  LPGRTDNEIKN+WNTH+K+KL+  G
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRG 120

Query: 121 IDPMTHQ 127
           IDP +H+
Sbjct: 121 IDPNSHR 127

Arabidopsis thaliana (taxid: 3702)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score =  202 bits (513), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 90/131 (68%), Positives = 103/131 (78%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCC++ GL++GPWT EEDQKLV  I  +G   WRA+PKLAGL RCGKSCRLRWTNY
Sbjct: 1   MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPD+KRG FS+ EE  IL LH+ LGN+WS IA  LPGRTDNEIKN+WNT LKK+L   G
Sbjct: 61  LRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQG 120

Query: 121 IDPMTHQPRTD 131
           +DP TH P  D
Sbjct: 121 LDPNTHLPLED 131

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
224084666	337	predicted protein [Populus trichocarpa]	0.956	0.988	0.707	1e-133
224063233	336	predicted protein [Populus trichocarpa]	0.959	0.994	0.68	1e-121
356518473	339	PREDICTED: transcription factor MYB39-li	0.948	0.973	0.649	1e-115
356510177	342	PREDICTED: transcription factor MYB39-li	0.942	0.959	0.646	1e-113
30024600	336	transcription factor MYB102 [Lotus japon	0.931	0.964	0.625	1e-109
225462517	330	PREDICTED: uncharacterized protein LOC10	0.945	0.996	0.584	1e-105
147765498	330	hypothetical protein VITISV_036780 [Viti	0.945	0.996	0.581	1e-105
297742866	330	unnamed protein product [Vitis vinifera]	0.942	0.993	0.602	1e-105
359494741	346	PREDICTED: uncharacterized protein LOC10	0.931	0.936	0.604	1e-103
224096171	341	predicted protein [Populus trichocarpa]	0.951	0.970	0.586	1e-101

>gi|224084666|ref|XP_002307380.1| predicted protein [Populus trichocarpa] gi|222856829|gb|EEE94376.1| predicted protein [Populus trichocarpa]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/352 (70%), Positives = 276/352 (78%), Gaps = 19/352 (5%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDENGLKKGPWTPEEDQKLV++IQKHGHGSWRALPKLA LNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDENGLKKGPWTPEEDQKLVDYIQKHGHGSWRALPKLADLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFSQDEEQTILHLHSI+GNKWS IATHLPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSQDEEQTILHLHSIIGNKWSTIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
            DPMTHQPRTD F SLP LIALANL+DL+E++ +DE A+R+Q EAVQLAK+QYLQ+LL S
Sbjct: 121 FDPMTHQPRTDFFDSLPQLIALANLRDLMEHRPLDEHAMRLQEEAVQLAKLQYLQYLLQS 180

Query: 181 AASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQ---HLGNINET 237
           AAS+ +T  YGQNGITDME  NL NSI         EN+   ++ L +Q   H  N    
Sbjct: 181 AASIPSTNSYGQNGITDMEVLNLLNSI-----PLIEENLVLNSSELENQGSNHFANAT-- 233

Query: 238 PHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPS 297
              SQ LH+P+ LS   DPQVPFS+Q SL N EMG      TM SQ+ N P D SW+LPS
Sbjct: 234 ---SQLLHHPSVLSQLSDPQVPFSYQPSL-NTEMGQAPFLTTMPSQEGNNPTDSSWVLPS 289

Query: 298 PPPAVHPSLTETTSVSNPGDASS-TSSYGGGTSSPYIWPELYFEDPIMQEIS 348
           P P +  +    TS+SNPGDASS TSSYGGGTSS   WPE +FEDPIM EIS
Sbjct: 290 PTPVL--ATVTDTSISNPGDASSTTSSYGGGTSS--YWPEHFFEDPIMHEIS 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063233|ref|XP_002301053.1| predicted protein [Populus trichocarpa] gi|222842779|gb|EEE80326.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/350 (68%), Positives = 263/350 (75%), Gaps = 16/350 (4%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDE GLKKGPWTPEED+KLV+ I+KHG GSWRALPKLAGLNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDEIGLKKGPWTPEEDEKLVDHIKKHGQGSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFSQDEEQTILHLHSI GNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSQDEEQTILHLHSIHGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
            DPMTHQP TD FASLP L+ALANL++ +E+  +DE A+ +QAEA+QLAK+QYLQ LL S
Sbjct: 121 FDPMTHQPLTDFFASLPQLMALANLREPMEHHPLDEHAMGLQAEALQLAKLQYLQCLLQS 180

Query: 181 AASLN-TTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINETPH 239
           AASL  +   Y QNGITD+E  NL NSI P   KE P   +S      S H GN      
Sbjct: 181 AASLIPSANSYDQNGITDLEVLNLLNSIPP--IKENPVLNSSELENQGSYHFGNAT---- 234

Query: 240 HSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPP 299
            SQ LH+P+ LS    PQVPFS+Q SL N EMG      T++SQ    P+D SW+LPS  
Sbjct: 235 -SQLLHHPSLLSQLSAPQVPFSYQPSL-NTEMGQAPFLTTILSQGDRNPSDSSWVLPS-- 290

Query: 300 PAVHPSLTETTSVSNPGDASS-TSSYGGGTSSPYIWPELYFEDPIMQEIS 348
           P + P     TS SNPGDASS TSSYGG TS    WPEL FE PIM +IS
Sbjct: 291 PTLAPQAATETSRSNPGDASSITSSYGGVTS----WPELLFEGPIMHDIS 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518473|ref|XP_003527903.1| PREDICTED: transcription factor MYB39-like [Glycine max]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/357 (64%), Positives = 272/357 (76%), Gaps = 27/357 (7%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDENGLKKGPWTPEEDQKLV+ IQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDENGLKKGPWTPEEDQKLVQHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFSQ+EEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
            DPMTHQPRTD+ ++LP+L+ALAN+ DL+++Q +DE AVR+QAEAV LAK+QYL +L+ S
Sbjct: 121 FDPMTHQPRTDLVSTLPYLLALANMTDLMDHQTLDEHAVRLQAEAVHLAKLQYLHYLIRS 180

Query: 181 AASLNTTTPYGQNGITDME--AFNLTNSIDPDSSKETPENINSAA---AALFSQHLGNIN 235
           + SL+T   Y Q+  T+ME  AF+L NSI   + KE P  +  A    AA  S  + +  
Sbjct: 181 SNSLSTNKSYDQSATTNMEPAAFSLLNSI--SNVKENPVMLQPADDTPAASLSHGIVS-- 236

Query: 236 ETPHHSQPLHYPNPL-SHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQ-DANYPADCSW 293
                SQPLH+PN L  H  +PQV FS Q+ L N+E+G  +N F ++SQ D     D SW
Sbjct: 237 -----SQPLHHPNVLPHHLLEPQVSFSSQSCL-NSEIGQGTN-FAIISQGDHTLDLDSSW 289

Query: 294 ILPS--PPPAVHPSLTETTSVSNPGDASSTSSYGGGTSSPYIWPELYFEDPIMQEIS 348
           I+PS  PP A+       TS +NPGDASS++S  GG  S Y W EL FEDPI+ E+S
Sbjct: 290 IIPSITPPNAI------GTSANNPGDASSSTSSYGGGPSSY-WSELLFEDPILHELS 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510177|ref|XP_003523816.1| PREDICTED: transcription factor MYB39-like [Glycine max]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/362 (64%), Positives = 275/362 (75%), Gaps = 34/362 (9%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDENGLKKGPWTPEEDQKLV+ IQKHGHGSWRALPK AGLNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDENGLKKGPWTPEEDQKLVQHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFSQ+EEQTILHLHSILGNKWS+IATHLPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSQEEEQTILHLHSILGNKWSSIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQ-IDEQAVRIQAEAVQLAKIQYLQHLLH 179
            DPMTHQPRTD+ ++LP+L+ALAN+ DL+++ Q +DE A+R+QAEAVQLAK+QYL +L+ 
Sbjct: 121 FDPMTHQPRTDLVSTLPYLLALANMTDLMDHHQTLDEHAMRLQAEAVQLAKLQYLHYLIQ 180

Query: 180 SAASLNTTTPYGQNG--ITDME---AFNLTNSIDPDSSKETPENI--NSAAAALFSQHLG 232
           S+ SL+TT  Y Q+    T+ME   AF+L NSI   + KE P  +  +   AA FS  + 
Sbjct: 181 SSNSLSTTNSYDQSATTTTNMEPTAAFSLLNSI--SNVKEDPVMLQPDDTPAASFSHGIA 238

Query: 233 NINETPHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQ-----DANY 287
           +       SQPLH+PN L H  DPQV FS Q+ L N+EMG  +N F ++SQ     D +Y
Sbjct: 239 S-------SQPLHHPNVLPHPLDPQVSFSSQSCL-NSEMGQGTN-FAIISQGDHTVDHDY 289

Query: 288 PADCSWILPSPPPAVHPSLTETTSVSNPGDA-SSTSSYGGGTSSPYIWPELYFEDPIMQE 346
               SWI+PS    + P  +  TS +NPGDA SSTSSY GG SS   W EL FEDPI+ E
Sbjct: 290 ---SSWIIPS----ITPPNSIGTSANNPGDASSSTSSYAGGPSS--YWSELLFEDPILHE 340

Query: 347 IS 348
           +S
Sbjct: 341 LS 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30024600|dbj|BAC75672.1| transcription factor MYB102 [Lotus japonicus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/360 (62%), Positives = 257/360 (71%), Gaps = 36/360 (10%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDENGLKKGPWTPEEDQKLVE IQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDENGLKKGPWTPEEDQKLVEHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFS +EEQTILHLHSILGNKWS IATHLPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSPEEEQTILHLHSILGNKWSTIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLE--NQQIDEQAVRIQAEAVQLAKIQYLQHLL 178
            DPMTHQPRTD+ ++LP+L+ALAN+  L++  +Q  DEQ       AVQLAK+QYL +LL
Sbjct: 121 FDPMTHQPRTDLVSTLPYLLALANMTQLMDHNHQSFDEQ-------AVQLAKLQYLNYLL 173

Query: 179 HSAAS-LNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENIN------SAAAALFSQHL 231
            S+ + L  T  Y QN +T+MEAF+L NSI         EN+           +LFS   
Sbjct: 174 QSSNNPLCMTNSYDQNALTNMEAFSLLNSI-----SNVKENLGVDFSQMDTQTSLFSHDG 228

Query: 232 GNINETPHHSQPLHYP-NPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPAD 290
            N+      SQPLH+P N L HF DPQV FS Q+ LNNNE G  +N+F  +SQ  +   +
Sbjct: 229 NNMAS----SQPLHHPSNMLPHFLDPQVSFSSQSCLNNNEQGQGTNNFA-ISQRDHTGDE 283

Query: 291 CSWILPSPPPAVHPSLTETTSVSNPGDA-SSTSSYGGGTSSPYIWPELYFEDP-IMQEIS 348
            SWI         PS+    ++   GDA SSTSSYGG   SPY W EL+FEDP  M E+S
Sbjct: 284 SSWI-------NIPSINPPNAIGTSGDASSSTSSYGGAGPSPYNWSELFFEDPTTMHELS 336

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462517|ref|XP_002265296.1| PREDICTED: uncharacterized protein LOC100244550 [Vitis vinifera] gi|296090478|emb|CBI40674.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/349 (58%), Positives = 253/349 (72%), Gaps = 20/349 (5%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDE+GLKKGPWTPEEDQKLV++IQK GHGSWRALPKLAGLNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDESGLKKGPWTPEEDQKLVKYIQKQGHGSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFS++EE+TIL+LHSILGNKWSAIA+HLPGRTDNEIKNF NTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSREEEETILNLHSILGNKWSAIASHLPGRTDNEIKNFRNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
            DPMTH+PRTD+FASLPHLIAL NLK+L+E+Q  +E AVR+QAEA Q+A++QYLQ+LL S
Sbjct: 121 FDPMTHRPRTDMFASLPHLIALVNLKELMEHQSWEEHAVRLQAEAAQMARLQYLQYLLQS 180

Query: 181 AASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINETPHH 240
            AS+ + +    +GITDMEAFNL +S+   SS +  + +NS+              TP  
Sbjct: 181 PASVASAS-NSISGITDMEAFNLLSSL---SSIKDTQVLNSSQLE---------TPTPSS 227

Query: 241 SQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPPP 300
                Y  P S  P  + P +F+T  ++ +M   SN FT+ SQ      +  W+  +   
Sbjct: 228 FGAGLYSMPFSRLPSLETPSTFETP-SSKDMAQSSN-FTVFSQGETL-LNSPWLPSASSS 284

Query: 301 AVHPSLTETTSVSNPGDASSTSSYGGGTSSPYIWPE-LYFEDPIMQEIS 348
           +        TS++NP DASS+  Y G   +P  WP+ ++ EDPI +EI+
Sbjct: 285 SHAAPPATETSITNPADASSSPIYEG---APLFWPDGVFIEDPIFREIA 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765498|emb|CAN78108.1| hypothetical protein VITISV_036780 [Vitis vinifera]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/349 (58%), Positives = 252/349 (72%), Gaps = 20/349 (5%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDE+GLKKGPWTPEEDQKLV++IQK GHGSWRALPKLAGLNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDESGLKKGPWTPEEDQKLVKYIQKQGHGSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFS++EE+TIL+LHSILGNKWSAIA+HLPGRTDNEIKNF NTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSREEEETILNLHSILGNKWSAIASHLPGRTDNEIKNFRNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
            DPMTH+PRTD+FASLPHLIAL NLK+L+ +Q  +E AVR+QAEA Q+A++QYLQ+LL S
Sbjct: 121 FDPMTHRPRTDMFASLPHLIALVNLKELMXHQSWEEHAVRLQAEAAQMARLQYLQYLLQS 180

Query: 181 AASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINETPHH 240
            AS+ + +    +GITDMEAFNL +S+   SS +  + +NS+              TP  
Sbjct: 181 PASVASAS-NSISGITDMEAFNLLSSL---SSIKDTQVLNSSQLE---------TPTPSS 227

Query: 241 SQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPPP 300
                Y  P S  P  + P +F+T  ++ +M   SN FT+ SQ      +  W+  +   
Sbjct: 228 FGAGLYSMPFSRLPSLETPSTFETP-SSKDMAQSSN-FTVFSQGETL-LNSPWLPSASSS 284

Query: 301 AVHPSLTETTSVSNPGDASSTSSYGGGTSSPYIWPE-LYFEDPIMQEIS 348
           +        TS++NP DASS+  Y G   +P  WP+ ++ EDPI +EI+
Sbjct: 285 SHAAPPATETSITNPADASSSPIYEG---APLFWPDGVFIEDPIFREIA 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742866|emb|CBI35631.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/350 (60%), Positives = 258/350 (73%), Gaps = 22/350 (6%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDE+GLKKGPWTPEEDQKLV++IQK GHGSWRALPKLAGLNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDESGLKKGPWTPEEDQKLVKYIQKQGHGSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFS++EE+TIL+LHSILGNKWSAIA+HLPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSREEEETILNLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
            DPMTH+PRTD+FASLPHLIAL NLK+L+E+Q  +E AVR+QAEA Q+A++Q LQ+LL S
Sbjct: 121 FDPMTHRPRTDMFASLPHLIALVNLKELMEHQSWEEHAVRLQAEAAQMARLQCLQYLLQS 180

Query: 181 AASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINETPHH 240
            AS+ T +    +GITDMEAFNL +S+   SS +  + +NS+              TP  
Sbjct: 181 PASVATAS-NSISGITDMEAFNLLSSL---SSIKDTQVLNSSQLETL---------TPSS 227

Query: 241 SQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPPP 300
                   P SH P  +   +F+T  ++ +M   SN FT+ SQ      +  W LPS   
Sbjct: 228 FGAGLDSMPFSHLPSLETLSTFETP-SSKDMAQSSN-FTVFSQGETL-LNSPW-LPS-SS 282

Query: 301 AVHPSLTET-TSVSNPGDASSTSSYGGGTSSPYIWPE-LYFEDPIMQEIS 348
           + H +L  T TS++NP DASS+ SY G  + P  WP+ ++ EDPI +EI+
Sbjct: 283 SSHAALPATETSITNPADASSSPSYEG--APPSFWPDGVFIEDPIFREIA 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494741|ref|XP_002267758.2| PREDICTED: uncharacterized protein LOC100242842 [Vitis vinifera]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/346 (60%), Positives = 254/346 (73%), Gaps = 22/346 (6%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDE+GLKKGPWTPEEDQKLV++IQK GHGSWRALPKLAGLNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDESGLKKGPWTPEEDQKLVKYIQKQGHGSWRALPKLAGLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFS++EE+TIL+LHSILGNKWSAIA+HLPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSREEEETILNLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
            DPMTH+PRTD+FASLPHLIAL NLK+L+E+Q  +E AVR+QAEA Q+A++Q LQ+LL S
Sbjct: 121 FDPMTHRPRTDMFASLPHLIALVNLKELMEHQSWEEHAVRLQAEAAQMARLQCLQYLLQS 180

Query: 181 AASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINETPHH 240
            AS+ T +    +GITDMEAFNL +S+   SS +  + +NS+              TP  
Sbjct: 181 PASVATAS-NSISGITDMEAFNLLSSL---SSIKDTQVLNSSQLETL---------TPSS 227

Query: 241 SQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPSPPP 300
                   P SH P  +   +F+T  ++ +M   SN FT+ SQ      +  W LPS   
Sbjct: 228 FGAGLDSMPFSHLPSLETLSTFETP-SSKDMAQSSN-FTVFSQGETL-LNSPW-LPS-SS 282

Query: 301 AVHPSLTET-TSVSNPGDASSTSSYGGGTSSPYIWPE-LYFEDPIM 344
           + H +L  T TS++NP DASS+ SY G  + P  WP+ ++ EDPI 
Sbjct: 283 SSHAALPATETSITNPADASSSPSYEG--APPSFWPDGVFIEDPIF 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096171|ref|XP_002310560.1| predicted protein [Populus trichocarpa] gi|222853463|gb|EEE91010.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/358 (58%), Positives = 255/358 (71%), Gaps = 27/358 (7%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR PCCDE+GLKKGPWT EEDQKLV++IQKHGHGSWRALPKL+GLNRCGKSCRLRWTNY
Sbjct: 1   MGRSPCCDESGLKKGPWTSEEDQKLVKYIQKHGHGSWRALPKLSGLNRCGKSCRLRWTNY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPDIKRGKFSQ+EEQTIL+LHS+LGNKWSAIA+HLPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct: 61  LRPDIKRGKFSQEEEQTILNLHSVLGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLH- 179
            DPMTH+PRTDIF+SLPHLIALANLK+L+++  ++E A+R+Q EA Q+AK+QYLQ+LL  
Sbjct: 121 FDPMTHRPRTDIFSSLPHLIALANLKELIDHHSLEEHALRLQTEAAQMAKLQYLQYLLQP 180

Query: 180 --SAASLNTTTPYGQNGI---TDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNI 234
              AAS   T+    N I   +D+EAFNL NS+   S K++P + + +   L +  L  I
Sbjct: 181 QPPAASNTATSSNNLNNIGTLSDIEAFNLLNSL--ASLKDSPVS-SLSQLDLPASSLQGI 237

Query: 235 NETPHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPAD---- 290
           N+            P SH PD Q+P ++QT          +   T+ SQ  N P      
Sbjct: 238 NDI---------SIPFSHLPDLQIPCNYQTPPTKGMAQ--APELTVFSQGENSPISPFQF 286

Query: 291 CSWILPSPPPAVHPSLTETTSVSNPGDASSTSSYGGGTSSPYIWPELYFEDPIMQEIS 348
            S   P PP AV P    ++ V+N GDASSTSSY  G   P +W +L  EDP+  +I+
Sbjct: 287 PSSSTPFPPSAVPPVTQISSMVNNLGDASSTSSY--GEEVPSVWHDL-LEDPMFHDIA 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2023951	365	MYB93 "myb domain protein 93"	0.755	0.720	0.631	2.9e-87
TAIR|locus:2145402	334	MYB92 "myb domain protein 92"	0.758	0.790	0.540	1.4e-73
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.801	0.869	0.498	7.7e-71
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.727	0.752	0.555	1.3e-70
TAIR|locus:2171845	310	MYB53 "myb domain protein 53"	0.709	0.796	0.555	5.5e-70
TAIR|locus:2150891	326	MYB16 "myb domain protein 16"	0.603	0.644	0.568	1.1e-62
TAIR|locus:505006490	360	MYB39 "myb domain protein 39"	0.890	0.861	0.422	2.4e-60
TAIR|locus:2102152	388	MYB106 "myb domain protein 106	0.594	0.533	0.564	3.9e-60
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.568	0.565	0.546	8.1e-60
TAIR|locus:2132957	282	MYB41 "myb domain protein 41"	0.643	0.794	0.504	5.1e-58

TAIR|locus:2023951 MYB93 "myb domain protein 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 185/293 (63%), Positives = 208/293 (70%)

Query:     1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
             MGR PCCDENGLKKGPWTPEEDQKL+++I KHGHGSWRALPKLA LNRCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
             LRPDIKRGKFS +EEQTILHLHSILGNKWSAIATHL GRTDNEIKNFWNTHLKKKLIQMG
Sbjct:    61 LRPDIKRGKFSAEEEQTILHLHSILGNKWSAIATHLQGRTDNEIKNFWNTHLKKKLIQMG 120

Query:   121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
             IDP+THQPRTD+FASLP LIALANLKDL+E      Q   +Q EA QLA +QYLQ + +S
Sbjct:   121 IDPVTHQPRTDLFASLPQLIALANLKDLIEQTS---QFSSMQGEAAQLANLQYLQRMFNS 177

Query:   181 AASL--NTTTPYGQNGITDME---AFNLTNSIDPDSSKETPE-------NINSAAAALFS 228
             +ASL  N    +  + I D++   A NL NS+   +  + P          N     LF 
Sbjct:   178 SASLTNNNGNNFSPSSILDIDQHHAMNLLNSMVSWNKDQNPAFDPVLELEANDQNQDLFP 237

Query:   229 QHLGNINETPHHSQPL-----HYPNPLSHFP---DP---QVPFSFQTSLNNNE 270
               LG I + P  +QPL     H  N  S  P   DP    VPFS QT LN+ +
Sbjct:   238 --LGFIIDQP--TQPLQQQKYHLNNSPSELPSQGDPLLDHVPFSLQTPLNSED 286

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2145402 MYB92 "myb domain protein 92" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 152/281 (54%), Positives = 187/281 (66%)

Query:     1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
             MGR P  D++GLKKGPWTP+ED+KLV ++QKHGH SWRALPKLAGLNRCGKSCRLRWTNY
Sbjct:     1 MGRSPISDDSGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
             LRPDIKRG+FS DEEQTIL+LHS+LGNKWS IA  LPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct:    61 LRPDIKRGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query:   121 IDPMTHQPRTDIFASLPHLIALA-NLKDLLENQQ---IDEQAVRIQAEAVQLAKIQYLQH 176
              DPMTH+PRTDIF+ L  L++L+ NL+  ++ QQ   ID++   ++ +  ++AK+Q  Q+
Sbjct:   121 FDPMTHRPRTDIFSGLSQLMSLSSNLRGFVDLQQQFPIDQEHTILKLQT-EMAKLQLFQY 179

Query:   177 LLHSAASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENI--NSAAAALFSQHLGNI 234
             LL  ++  N   P       D +  +L NSI   S KET  N   N+        +L + 
Sbjct:   180 LLQPSSMSNNVNP------NDFDTLSLLNSIA--SFKETSNNTTSNNLDLGFLGSYLQDF 231

Query:   235 NETPHHSQPLHYPNPLSHFPD--PQVPFSFQTSLNNNEMGP 273
             +  P          P S FP       F F T   N  + P
Sbjct:   232 HSLPSLKTLNSNMEPSSVFPQNLDDNHFKFSTQRENLPVSP 272

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 149/299 (49%), Positives = 192/299 (64%)

Query:     1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
             MGR PCCDE+GLKKGPWTPEEDQKL+  I+KHGHGSWRALPK AGLNRCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
             LRPDIKRG F+ +EEQTI++LHS+LGNKWS+IA HLPGRTDNEIKN+WNTH++KKLIQMG
Sbjct:    61 LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMG 120

Query:   121 IDPMTHQPRTD---IFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHL 177
             IDP+TH+PRTD   + A+LP L+A AN  +LL   Q       IQ +A  +AK Q L  +
Sbjct:   121 IDPVTHRPRTDHLNVLAALPQLLAAANFNNLLNLNQ------NIQLDATSVAKAQLLHSM 174

Query:   178 LHSAASLNTTTPYG----QNGITDMEAF--NLTNSIDPDSSKETPENINSAAAALFSQHL 231
             +   ++ NT++ +      N +    +F  NL N  +P    +   +I+      FS  +
Sbjct:   175 IQVLSNNNTSSSFDIHHTTNNLFGQSSFLENLPNIENPYDQTQGLSHIDDQPLDSFSSPI 234

Query:   232 GNINETPHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPAD 290
               +     H Q    P  +S  PD       Q  + N E+   ++  +  S  + +  D
Sbjct:   235 RVV--AYQHDQNF-IPPLISTSPDESK--ETQMMVKNKEIMKYNDHTSNPSSTSTFTQD 288

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 151/272 (55%), Positives = 182/272 (66%)

Query:     1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
             MGR PCCDENGLKKGPWT EED KL++ IQKHGHGSWRALPK AGLNRCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
             LRPDIKRG F+++EEQTI++LHS+LGNKWS+IA +LPGRTDNEIKN+WNTHL+KKL+QMG
Sbjct:    61 LRPDIKRGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHLRKKLLQMG 120

Query:   121 IDPMTHQPRTD---IFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHL 177
             IDP+TH+PRTD   + A+LP LIA AN   LL   Q       +Q +A  LAK Q L  +
Sbjct:   121 IDPVTHRPRTDHLNVLAALPQLIAAANFNSLLNLNQ------NVQLDATTLAKAQLLHTM 174

Query:   178 LHSAASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINET 237
             +   ++ N TT    +  T M+  N TN     S  E  +N+        SQ+  +I E 
Sbjct:   175 IQVLSTNNNTTNPSFSSST-MQNSN-TNLFGQASYLEN-QNLFGQ-----SQNFSHILED 226

Query:   238 PHHSQPLHY-PNPLSHFPDPQVPFSFQTSLNN 268
              +         NPL  F  P  P  FQ   N+
Sbjct:   227 ENLMVKTQIIDNPLDSFSSPIQP-GFQDDHNS 257

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2171845 MYB53 "myb domain protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 146/263 (55%), Positives = 179/263 (68%)

Query:     1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
             MGR P  DE GLKKGPW PEED KL+ +I KHGH SW ALPKLAGLNRCGKSCRLRWTNY
Sbjct:     1 MGRSPSSDETGLKKGPWLPEEDDKLINYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
             LRPDIKRGKFS +EE+TIL+LH++LGNKWS IA+HLPGRTDNEIKNFWNTHLKKKLIQMG
Sbjct:    61 LRPDIKRGKFSAEEEETILNLHAVLGNKWSMIASHLPGRTDNEIKNFWNTHLKKKLIQMG 120

Query:   121 IDPMTHQPRTD-IFASLPHLIALANLKDLLENQQ---IDEQAV-RIQAEAVQLAKIQYLQ 175
              DPMTHQPRTD IF+SL  L++L+NL+ L++ QQ   +++QA+  +Q E  +L   QYL 
Sbjct:   121 FDPMTHQPRTDDIFSSLSQLMSLSNLRGLVDLQQQFPMEDQALLNLQTEMAKLQLFQYLL 180

Query:   176 HLLHSAASLNTTTP------YGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQ 229
                 +  S+N   P        +N +T        +S   D +     ++ +     FSQ
Sbjct:   181 QPSPAPMSINNINPNILNLLIKENSVTSNIDLGFLSSHLQDFNNNNLPSLKTLDDNHFSQ 240

Query:   230 HLGNI--NETPHHSQ---PLHYP 247
             +   I  +E P  +Q   P H P
Sbjct:   241 NTSPIWLHEPPSLNQTMLPTHDP 263

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 124/218 (56%), Positives = 159/218 (72%)

Query:     1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
             MGR PCCD+ GLKKGPWTPEEDQKL+ +I++HGHGSWR+LP+ AGL+RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLHRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
             LRPDIKRGKF+  EEQTI+ LH++LGN+WSAIATHLP RTDNEIKN+WNTHLKK+L++MG
Sbjct:    61 LRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMG 120

Query:   121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
             IDP+TH+P+ +   S    + L+    +L +    E A R++AEA +LA+   L HL H 
Sbjct:   121 IDPVTHKPKNETPLSS---LGLSKNAAILSHTAQWESA-RLEAEA-RLARESKLLHLQHY 175

Query:   181 AASLNTTTPYGQNGITDMEAF-NLTNSIDPDSSK-ETP 216
                  ++ P+  +G T      N T     D  + E+P
Sbjct:   176 QTK-TSSQPHHHHGFTHKSLLPNWTTKPHEDQQQLESP 212

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:505006490 MYB39 "myb domain protein 39" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 138/327 (42%), Positives = 191/327 (58%)

Query:     1 MGRPPCCDEN-GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTN 59
             MGR PCCD++ G+KKGPW PEED KL  +I ++G+G+WR+LPKLAGLNRCGKSCRLRW N
Sbjct:     1 MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query:    60 YLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQM 119
             YLRPDI+RGKFS  EE TI+ LH++LGNKWS IA HLPGRTDNEIKN+WNTH++KKL+QM
Sbjct:    61 YLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQM 120

Query:   120 GIDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQ-LAKIQYLQHLL 178
             GIDP+TH+PRT+  +  P L     L   + N Q     +     A++ + K+Q +  +L
Sbjct:   121 GIDPVTHEPRTNDLS--PILDVSQMLAAAINNGQFGNNNLLNNNTALEDILKLQLIHKML 178

Query:   179 H--SAASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINE 236
                +  ++   + +  N + + +   + NS + +S    P+      A LF    G   E
Sbjct:   179 QIITPKAIPNISSFKTN-LLNPKPEPVVNSFNTNSVNPKPD----PPAGLFINQSGITPE 233

Query:   237 TPHHSQPLHYPNPLSHFPDPQVPFSFQTSLNN-NEMGPCSNSFTMVSQDANYPA-DCSW- 293
                   P  Y N    F D Q+P     S  + N   P +++ T V+         C + 
Sbjct:   234 AASDFIP-SYENVWDGFEDNQLPGLVTVSQESLNTAKPGTSTTTKVNDHIRTGMMPCYYG 292

Query:   294 --ILPSPPPAVHPSLTETTSVSNPGDA 318
               +L +P         ETTS+++P  A
Sbjct:   293 DQLLETPSTGSVSVSPETTSLNHPSTA 319

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 122/216 (56%), Positives = 155/216 (71%)

Query:     5 PCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64
             PCCD+ GLKKGPWTPEEDQKL+ +I++HGHGSWR+LP+ AGL RCGKSCRLRWTNYLRPD
Sbjct:    48 PCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYLRPD 107

Query:    65 IKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPM 124
             IKRGKF+  EEQTI+ LH++LGN+WSAIATHLP RTDNEIKN+WNTHLKK+LI+MGIDP+
Sbjct:   108 IKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDPV 167

Query:   125 THQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLH--SAA 182
             TH+ + +  +S        N   L    Q +  + R++AEA +LA+   L HL H  +  
Sbjct:   168 THKHKNETLSSSTG--QSKNAATLSHMAQWE--SARLEAEA-RLARESKLLHLQHYQNNN 222

Query:   183 SLNTTTPYGQNGITDMEAFNLT--NSIDPDSSKETP 216
             +LN +    Q+  T   + N T  N  + D   E+P
Sbjct:   223 NLNKSAAPQQHCFTQKTSTNWTKPNQGNGDQQLESP 258

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010091 "trichome branching" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 118/216 (54%), Positives = 153/216 (70%)

Query:     1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
             M R PCC++NGLKKGPWT EEDQKLV++IQKHG+G+WR LPK AGL RCGKSCRLRWTNY
Sbjct:     1 MARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
             LRPDIKRG+FS +EE+TI+ LHS LGNKWSAIA  LPGRTDNEIKNFWNTH++KKL++MG
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKLLRMG 120

Query:   121 IDPMTHQPRTDIFASLPHLIALA---------NLKDLL--ENQQIDEQAVRIQAEAVQLA 169
             IDP+TH PR D+   +  ++A +         N+  L+   N++  +Q   +  E ++LA
Sbjct:   121 IDPVTHSPRLDLL-DISSILASSLYNSSSHHMNMSRLMMDTNRRHHQQHPLVNPEILKLA 179

Query:   170 KIQYLQH----LL--HSAASLNTTTPYGQNGITDME 199
                + Q+    L+  H + +    T Y Q G+   +
Sbjct:   180 TSLFSQNQNQNLVVDHDSRTQEKQTVYSQTGVNQYQ 215

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2132957 MYB41 "myb domain protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 119/236 (50%), Positives = 159/236 (67%)

Query:     1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
             MGR PCCD+NG+KKGPWT EEDQKL+++I+ HG G+WR LPK AGL+RCGKSCRLRWTNY
Sbjct:     1 MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNY 60

Query:    61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
             LRPDIKRG+FS +EE+TI+ LHS++GNKWSAIA  LPGRTDNEIKN WNTH++K+L++ G
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKRLVRSG 120

Query:   121 IDPMTHQPRTDIFASLPHLIALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS 180
             IDP+TH PR D       L+ L++L   L NQ  +  AV   A ++    +  L  LL  
Sbjct:   121 IDPVTHSPRLD-------LLDLSSLLSALFNQP-NFSAVATHASSLLNPDVLRLASLLLP 172

Query:   181 AASLNTTTPYGQNGITDMEAFNLTN-SIDPDSSKET-PENINSAAAALFSQHLGNI 234
               + N   P   N   +++  N ++ S  P +   T P N  +++    +  L ++
Sbjct:   173 LQNPNPVYP--SNLDQNLQTPNTSSESSQPQAETSTVPTNYETSSLEPMNARLDDV 226

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0016049 "cell growth" evidence=IMP

GO:0042335 "cuticle development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080090 "regulation of primary metabolic process" evidence=IMP

GO:0080091 "regulation of raffinose metabolic process" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007128001 SubName- Full=Chromosome undetermined scaffold_184, whole genome shotgun sequence; (330 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	4e-63
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	6e-61
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-17
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-16
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	9e-16
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-14
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	9e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	1e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-11
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	1e-05
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-05
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	0.001

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  207 bits (528), Expect = 4e-63
 Identities = 121/332 (36%), Positives = 164/332 (49%), Gaps = 21/332 (6%)

Query: 1   MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           MGR  CC +  L+KG W+PEED+KL+  I K+GHG W ++PK AGL RCGKSCRLRW NY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG 120
           LRPD+KRG FSQ EE  I+ LH++LGN+WS IA  LPGRTDNEIKN WN+ LKKKL Q G
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 121 IDPMTHQPRTDIFASLPHLIALANLKDLLEN-QQIDEQAVRIQAEAVQLAKIQYLQHL-- 177
           IDP TH+P          L  + N +D         ++A  + +  + L K    + L  
Sbjct: 121 IDPNTHKP----------LSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLAA 170

Query: 178 LHSAASLNTTTPYGQNGITDMEAFNLTNSIDPDSSKETPENINSAAAALFSQHLGNINET 237
           L    S + +    Q  +    +  + NS + + S                +   +   +
Sbjct: 171 LQEKRSSSISPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKDFFLDRFTTSHESS 230

Query: 238 PHHSQPLHYPNPLSHFPDPQVPFSFQTSLNNNEMGPCSNSFTMVSQDANYPADCSWILPS 297
               +P      + HFP  Q+ ++    L+ N       S    S + N     S     
Sbjct: 231 TTSCRPSDL---VGHFPFQQLNYASNARLSTNPNPTLWFSQNSKSFEMNSEFSSSMTPSI 287

Query: 298 PPPAVHPSLTETT-----SVSNPGDASSTSSY 324
            PP+V  S   T      S+S P D  S  S+
Sbjct: 288 LPPSVTSSFLPTPMSYKPSISLPSDNPSIPSF 319

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  195 bits (497), Expect = 6e-61
 Identities = 84/124 (67%), Positives = 100/124 (80%)

Query: 5   PCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64
           PCC + G+K+GPWT EED+ LV FI+K G G WR+LPK AGL RCGKSCRLRW NYLRP 
Sbjct: 16  PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPS 75

Query: 65  IKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPM 124
           +KRG  + DEE  IL LH +LGN+WS IA  +PGRTDNEIKN+WNTHL+KKL++ GIDP 
Sbjct: 76  VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQ 135

Query: 125 THQP 128
           TH+P
Sbjct: 136 THKP 139

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 75.3 bits (186), Expect = 1e-17
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
          +GPWTPEED+ L+E ++KHG+G+W  + K     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 12  LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 71
            K G W   ED+ L   ++K G  +W  +  L      GK    RW N+L P +K+  +S
Sbjct: 18  RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWS 76

Query: 72  QDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWN 109
           ++E++ ++ L   LG +WS IA +   RT  +    + 
Sbjct: 77  EEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYV 114

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 69.9 bits (172), Expect = 9e-16
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 67  RGKFSQDEEQTILHLHSILGNK-WSAIATHLPGRTDNEIKNFWNTHL 112
           RG ++ +E++ ++      GN  WS IA HLPGRTDN+ KN WN +L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 65.7 bits (161), Expect = 4e-14
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP 63
          KG WT EED+ L+E ++K+G  +W  + K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 64.7 bits (158), Expect = 9e-14
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 17 WTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQ 76
          WT EED+KL++ ++K+G   W+ + +   L R   +CR RW   LRP   RG ++++E+Q
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 67  RGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKK 114
           +G+++++E++ ++ L    G N W  IA  LPGRT  + +  W   LK 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 16 PWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
          PWT EED+ L+E ++K+G  +W  + K     R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 69  KFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHL 112
            ++++E++ +L      G N W  IA  LPGRT  + +  W   L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 16 PWTPEEDQKLVEFIQKHGHGSWRA---LPKLAGLNRCGKSCRLRWTN 59
           WT EED+ LVE ++K+G G+W            NR     + +W N
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVN-NRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 70  FSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQ 118
           ++++E++ +L L    GN W  IA  L GRT +  ++ W   L+ K  +
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 63  PDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDN 102
           P IK+ +++++E++ +LHL  +L  +W  IA  + GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAP-IVGRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.71
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.55
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.54
PLN03212	249	Transcription repressor MYB5; Provisional	99.5
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.47
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.44
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.44
PLN03091	459	hypothetical protein; Provisional	99.41
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.33
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.32
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.31
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.28
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.14
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.02
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.85
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.67
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.35
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.31
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.64
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.61
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.57
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.26
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.18
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.11
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.01
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.73
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.54
PRK13923	170	putative spore coat protein regulator protein YlbO	96.43
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.41
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.95
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	95.86
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.81
KOG1279	506	consensus Chromatin remodeling factor subunit and	95.48
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.23
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.2
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	94.1
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	93.99
PRK13923	170	putative spore coat protein regulator protein YlbO	93.52
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.4
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	92.71
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.53
KOG2656	445	consensus DNA methyltransferase 1-associated prote	91.66
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.26
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.18
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.71
KOG1194	534	consensus Predicted DNA-binding protein, contains	89.01
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	81.35

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-38  Score=316.88  Aligned_cols=132  Identities=65%  Similarity=1.230  Sum_probs=129.2

Q ss_pred             CCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHH
Q 037998            1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILH   80 (348)
Q Consensus         1 mGr~pcc~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~   80 (348)
                      |||+|||++.++|||+||+|||++|+++|++||.++|..||+.+|++|+++|||+||.+||+|.+++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchh
Q 037998           81 LHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDI  132 (348)
Q Consensus        81 lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl  132 (348)
                      +|++||++|+.||++|+|||+++||+||+.++||++++.++++.+++++...
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~  132 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEV  132 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc
Confidence            9999999999999999999999999999999999999999999999998754

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=3.1e-38  Score=295.61  Aligned_cols=128  Identities=66%  Similarity=1.266  Sum_probs=125.0

Q ss_pred             CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHH
Q 037998            3 RPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLH   82 (348)
Q Consensus         3 r~pcc~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv   82 (348)
                      |+|||+++++|+++||+|||++|+++|++||..+|+.||+.+|++|+++|||+||.|+|+|.+++++||+|||++|+++|
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             HHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 037998           83 SILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRT  130 (348)
Q Consensus        83 ~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~  130 (348)
                      ++||++|+.||++|+|||+++|||||+.++++++++.++++.+++++.
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~  141 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD  141 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999988865

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=2.3e-37  Score=289.98  Aligned_cols=119  Identities=68%  Similarity=1.201  Sum_probs=112.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSA   91 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~   91 (348)
                      +.||+||+|||++|++||++||+++|..||+.+|++||+|+||+||+|||+|++++|.||+|||++|+++|+++|++|+.
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 037998           92 IATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRT  130 (348)
Q Consensus        92 IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~  130 (348)
                      ||++|||||+++|||+|++++||++.+.+.++.+..+..
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~~~~  125 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHRPST  125 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCcccccc
Confidence            999999999999999999999999999987666655443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=2.9e-18  Score=177.08  Aligned_cols=116  Identities=26%  Similarity=0.424  Sum_probs=103.6

Q ss_pred             CCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHH
Q 037998            1 MGRPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILH   80 (348)
Q Consensus         1 mGr~pcc~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~   80 (348)
                      +||.-....|++|+|+||++||.+|+.+|.+||..+|-.|-..+ |+|+..|||+||+|.|....|.+.||-.||+.|+.
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v-PnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV-PNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhc-CCccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            47888888999999999999999999999999999999999888 89999999999999999999999999999999999


Q ss_pred             HHHHhC-CchhhHhhhCCCCCHH---HHHHHHHHHHHHHHHh
Q 037998           81 LHSILG-NKWSAIATHLPGRTDN---EIKNFWNTHLKKKLIQ  118 (348)
Q Consensus        81 lv~~~G-nkWs~IA~~LpgRT~~---qcKnRW~~~Lkk~l~k  118 (348)
                      +|++|| +.|.+||..||+||..   .||.|+.. .++++..
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~-~k~rl~~  466 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIA-AKLRLAA  466 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHHHHHHHH-HHHHHhc
Confidence            999999 7899999999999994   45555532 2344443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.71  E-value=2.4e-17  Score=170.34  Aligned_cols=144  Identities=20%  Similarity=0.328  Sum_probs=121.7

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc---------------------------------
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCR---------------------------------   54 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR---------------------------------   54 (348)
                      ..|.++|-.|++|||++|..+...+++-+|..||..+|.+|+..||.                                 
T Consensus       247 l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~n  326 (939)
T KOG0049|consen  247 LNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSIN  326 (939)
T ss_pred             cCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhcc
Confidence            46778888999999999999998888888888888888666655554                                 


Q ss_pred             ---------------------cccccccCCCCCCCCCCHHHHHHHHHHHHHhCCc-hhhHhhhCCCCCHHHHHHHHHHHH
Q 037998           55 ---------------------LRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNK-WSAIATHLPGRTDNEIKNFWNTHL  112 (348)
Q Consensus        55 ---------------------~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gnk-Ws~IA~~LpgRT~~qcKnRW~~~L  112 (348)
                                           .||...|+|.+++|.||.+||.+|+.+|.+||.+ |.+|...+|||++.|||.||.+.|
T Consensus       327 ShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL  406 (939)
T KOG0049|consen  327 SHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVL  406 (939)
T ss_pred             CccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHH
Confidence                                 4788889999999999999999999999999976 999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCccchhhhcCchhhhhcchHHHHhhh
Q 037998          113 KKKLIQMGIDPMTHQPRTDIFASLPHLIALANLKDLLENQ  152 (348)
Q Consensus       113 kk~l~k~g~dp~e~qp~~dl~~~lp~l~a~~Nl~~~~~~~  152 (348)
                      ..+++.+.|+-.++..+..++..++.-. .+++...+.+.
T Consensus       407 ~~s~K~~rW~l~edeqL~~~V~~YG~g~-WakcA~~Lp~~  445 (939)
T KOG0049|consen  407 NRSAKVERWTLVEDEQLLYAVKVYGKGN-WAKCAMLLPKK  445 (939)
T ss_pred             HHhhccCceeecchHHHHHHHHHHccch-HHHHHHHcccc
Confidence            9999999999999888877776554311 35566666654

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.55  E-value=1.7e-15  Score=112.89  Aligned_cols=60  Identities=45%  Similarity=0.956  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHH
Q 037998           17 WTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTI   78 (348)
Q Consensus        17 WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~L   78 (348)
                      ||+|||++|+.+|.+|| .+|..||+.+| .|+..+|+.||.++|++.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 69999999995 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.54  E-value=9.2e-15  Score=150.22  Aligned_cols=108  Identities=28%  Similarity=0.538  Sum_probs=102.7

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 037998            9 ENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNK   88 (348)
Q Consensus         9 ~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gnk   88 (348)
                      ...++.|.|+..||+.|..+|+++|.++|..||..++ .|++++|+.||.++++|.+++..|+.|||..|+.+..++|..
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            3457889999999999999999999999999999996 589999999999999999999999999999999999999999


Q ss_pred             hhhHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 037998           89 WSAIATHLPGRTDNEIKNFWNTHLKKKLI  117 (348)
Q Consensus        89 Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~  117 (348)
                      |+.||..+++||..+|.+||...+.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999988776

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.50  E-value=2.2e-14  Score=135.27  Aligned_cols=91  Identities=14%  Similarity=0.272  Sum_probs=77.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCchh
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHL-PGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHL  139 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~L-pgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~l  139 (348)
                      ++.+++++||+|||++|+++|++|| ++|..||+++ ++||.+|||.||.++|++.++++.|+.+|+..+..++..++..
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            4578999999999999999999999 6799999998 6999999999999999999999999999998888887777776


Q ss_pred             hhhcchHHHHhhhhh
Q 037998          140 IALANLKDLLENQQI  154 (348)
Q Consensus       140 ~a~~Nl~~~~~~~q~  154 (348)
                      |+.  +...+..+..
T Consensus       100 Ws~--IAk~LpGRTD  112 (249)
T PLN03212        100 WSL--IAGRIPGRTD  112 (249)
T ss_pred             HHH--HHhhcCCCCH
Confidence            653  4444444443

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=2.7e-14  Score=145.17  Aligned_cols=107  Identities=28%  Similarity=0.590  Sum_probs=101.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhh
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSA   91 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~   91 (348)
                      +|.|.|+.-||+.|..+|.+||.+.|+.|++.+ ...+++||+.||..+++|.+++..|+.|||++|+++.+.....|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll-~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLL-NRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHH-hhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            678999999999999999999999999999999 5889999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q 037998           92 IATHLPGRTDNEIKNFWNTHLKKKLIQMG  120 (348)
Q Consensus        92 IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g  120 (348)
                      |+..| ||+.++|-.||++++........
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~~  111 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSYHY  111 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhhhc
Confidence            99999 99999999999999987766543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.44  E-value=3.9e-14  Score=133.14  Aligned_cols=80  Identities=18%  Similarity=0.272  Sum_probs=74.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCchhh
Q 037998           63 PDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLP-GRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLI  140 (348)
Q Consensus        63 p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp-gRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~l~  140 (348)
                      +.+.+|+||.|||++|+++|++|| ++|..|++.++ +|++++||.||.+||++.++++.|+++|++.+..+++.+++.+
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345579999999999999999999 56999999998 9999999999999999999999999999999999999999988


Q ss_pred             hh
Q 037998          141 AL  142 (348)
Q Consensus       141 a~  142 (348)
                      +.
T Consensus        85 s~   86 (238)
T KOG0048|consen   85 SL   86 (238)
T ss_pred             HH
Confidence            73

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.44  E-value=7.7e-14  Score=145.01  Aligned_cols=113  Identities=29%  Similarity=0.594  Sum_probs=97.8

Q ss_pred             CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCC--CCCCCCHHHHHHHHH
Q 037998            3 RPPCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI--KRGKFSQDEEQTILH   80 (348)
Q Consensus         3 r~pcc~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~i--krg~WT~EED~~Ll~   80 (348)
                      |.+--.++  ++|.||+||++.|..+|..|| ++|..|++.+|  |.+..||+||++|...+-  +++.||.||+++|++
T Consensus       375 R~y~~FE~--~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk  449 (607)
T KOG0051|consen  375 RAYTPFEN--KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLK  449 (607)
T ss_pred             hcCCcccc--ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHH
Confidence            33333444  899999999999999999999 79999999997  999999999999999985  899999999999999


Q ss_pred             HHH-------Hh-------C-----C-------chhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q 037998           81 LHS-------IL-------G-----N-------KWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG  120 (348)
Q Consensus        81 lv~-------~~-------G-----n-------kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g  120 (348)
                      +|+       ++       |     .       .|..|++.+..|+..+|+.+|+.++........
T Consensus       450 ~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~  515 (607)
T KOG0051|consen  450 TVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKR  515 (607)
T ss_pred             HHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcc
Confidence            995       33       1     1       399999999999999999999999977655433

>PLN03091 hypothetical protein; Provisional

Probab=99.41  E-value=1.5e-13  Score=138.37  Aligned_cols=99  Identities=15%  Similarity=0.253  Sum_probs=82.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCchh
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHL-PGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHL  139 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~L-pgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~l  139 (348)
                      ++.+++++||+|||++|+++|++|| ++|+.||+.+ ++||.+|||.||.++|++.++++.|++++++.+..++..++..
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            3578899999999999999999999 5799999998 5999999999999999999999999999999999998888876


Q ss_pred             hhhcchHHHHhhhhhHHHHHHHH
Q 037998          140 IALANLKDLLENQQIDEQAVRIQ  162 (348)
Q Consensus       140 ~a~~Nl~~~~~~~q~e~~~~rlq  162 (348)
                      |..  +...+..+.......|..
T Consensus        89 Wsk--IAk~LPGRTDnqIKNRWn  109 (459)
T PLN03091         89 WSQ--IAAQLPGRTDNEIKNLWN  109 (459)
T ss_pred             hHH--HHHhcCCCCHHHHHHHHH
Confidence            653  444444444444444433

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.33  E-value=1.5e-12  Score=93.52  Aligned_cols=46  Identities=28%  Similarity=0.669  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-hhhHhhhCC-CCCHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL  112 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gnk-Ws~IA~~Lp-gRT~~qcKnRW~~~L  112 (348)
                      |++||+|||++|++++.+||.+ |..||..|+ +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999987 999999999 999999999998874

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.32  E-value=3e-13  Score=100.80  Aligned_cols=57  Identities=30%  Similarity=0.573  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 037998           70 FSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTH  126 (348)
Q Consensus        70 WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~  126 (348)
                      ||+|||++|+++|++||++|..||++|+.||..+|++||+.+|++.+.+..|++.++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd   57 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEED   57 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHH
Confidence            999999999999999999999999999669999999999998888888888775543

...

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.31  E-value=7.2e-13  Score=137.88  Aligned_cols=169  Identities=17%  Similarity=0.194  Sum_probs=135.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC----C-------------------CcccccccccccccccccccccccccCCCC-CC
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGH----G-------------------SWRALPKLAGLNRCGKSCRLRWTNYLRPDI-KR   67 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~----~-------------------~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~i-kr   67 (348)
                      ++.+.|+.|||+.|...|..|-.    .                   -|+.|.+.+ |-|+.++++.+-++...+-- ++
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~L-p~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLL-PYRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhc-CcccchhHHHHHHhcCCcccccc
Confidence            44589999999999999988821    1                   267777778 45999998773333333322 99


Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHH--HHhcCCCCCCCCccchhhhcCchh------
Q 037998           68 GKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKK--LIQMGIDPMTHQPRTDIFASLPHL------  139 (348)
Q Consensus        68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~--l~k~g~dp~e~qp~~dl~~~lp~l------  139 (348)
                      |.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+++..  ..++.|+-++...+.+++..++..      
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~  463 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQA  463 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999 999999999999999887  589999999999988888644331      


Q ss_pred             ------hhhcchHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 037998          140 ------IALANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSAA  182 (348)
Q Consensus       140 ------~a~~Nl~~~~~~~q~e~~~~rlq~~a~~~aklq~~q~l~~~~~  182 (348)
                            ....-..++.+.++|...+..++++.+..|+.+|+..+.+++.
T Consensus       464 ~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~  512 (607)
T KOG0051|consen  464 SNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF  512 (607)
T ss_pred             cccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence                  1121223445668999999999999889999999999887765

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.28  E-value=4.3e-13  Score=96.39  Aligned_cols=48  Identities=44%  Similarity=0.860  Sum_probs=42.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      |++||+|||++|+++|.+||.++|..||+.++.+|++.||+.||.+++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999997779999999966999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.14  E-value=7.2e-11  Score=81.96  Aligned_cols=47  Identities=36%  Similarity=0.820  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (348)
                      ++.||++||.+|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999988764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.02  E-value=5.9e-10  Score=76.30  Aligned_cols=44  Identities=32%  Similarity=0.707  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHH
Q 037998           69 KFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHL  112 (348)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~L  112 (348)
                      +||++|+..|++++.++| .+|..||..+++||..+|++||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.85  E-value=7.9e-10  Score=76.65  Aligned_cols=48  Identities=42%  Similarity=0.887  Sum_probs=44.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR   62 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~   62 (348)
                      +++||+|||++|+.++..||..+|..|++.+ ++|+..+|+.||.++++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~-~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKEL-PGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc-CCCCHHHHHHHHHHHcC
Confidence            5789999999999999999977999999999 49999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.67  E-value=6.1e-09  Score=71.24  Aligned_cols=44  Identities=43%  Similarity=0.861  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 037998           16 PWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY   60 (348)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~   60 (348)
                      +||.|||+.|+.++.+||.++|..|++.++ +|++.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999889999999994 89999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=4.6e-07  Score=93.17  Aligned_cols=101  Identities=20%  Similarity=0.248  Sum_probs=80.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCchhhhhc
Q 037998           65 IKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALA  143 (348)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~l~a~~  143 (348)
                      ++.|-|+.-||+.|-.+|.+|| +.|++|+..|..+|..||++||+.++.+.+++..|...++..+..+...+|      
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p------   78 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEP------   78 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcC------
Confidence            5678899999999999999999 679999999999999999999999999999999999888776665444333      


Q ss_pred             chHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 037998          144 NLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHSA  181 (348)
Q Consensus       144 Nl~~~~~~~q~e~~~~rlq~~a~~~aklq~~q~l~~~~  181 (348)
                              -||-.++.-+..-  ..+|++.|+.|+-..
T Consensus        79 --------~qwrtIa~i~gr~--~~qc~eRy~~ll~~~  106 (617)
T KOG0050|consen   79 --------TQWRTIADIMGRT--SQQCLERYNNLLDVY  106 (617)
T ss_pred             --------CccchHHHHhhhh--HHHHHHHHHHHHHHH
Confidence                    3565555444433  345788888777543

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.31  E-value=4.9e-08  Score=101.07  Aligned_cols=95  Identities=32%  Similarity=0.699  Sum_probs=83.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC--CCCCCCCCHHHHHHHHHHHHHhC----
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP--DIKRGKFSQDEEQTILHLHSILG----   86 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p--~ikrg~WT~EED~~Ll~lv~~~G----   86 (348)
                      .+|.||+||++.|...+.++| +.|..|.+.++  |-+..||+||.+|...  .+++++|+.||+.+|...+.+.-    
T Consensus       290 ~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~  366 (512)
T COG5147         290 QRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ  366 (512)
T ss_pred             hhccCcccccccccccccccc-chhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh
Confidence            379999999999999999999 79999998776  9999999999999999  57888999999999999887432    


Q ss_pred             ----CchhhHhhhCCCCCHHHHHHHHHH
Q 037998           87 ----NKWSAIATHLPGRTDNEIKNFWNT  110 (348)
Q Consensus        87 ----nkWs~IA~~LpgRT~~qcKnRW~~  110 (348)
                          -.|..|++++++|..-.|+.++..
T Consensus       367 ~~~~~~~~li~~~~~~~~~~~~~~~~~~  394 (512)
T COG5147         367 QSSRILWLLIAQNIRNRLQHHCRDKYGV  394 (512)
T ss_pred             hhhhhhHHHHHHhhhccccCCCCCcccc
Confidence                249999999998888888776533

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.64  E-value=2.1e-05  Score=59.28  Aligned_cols=49  Identities=16%  Similarity=0.378  Sum_probs=43.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-ccccccccccccc
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGHGSW---RALPKLAGLNR-CGKSCRLRWTNYL   61 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~~~W---~~IAk~lg~~R-s~kqCR~Rw~n~L   61 (348)
                      ++-.||+||.++++++|+.+|.++|   +.|++.++..| +..||+.+.+.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4668999999999999999998899   99999887666 9999999887664

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.61  E-value=0.00016  Score=54.60  Aligned_cols=47  Identities=17%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ch---hhHhhhCC-CC-CHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGN-KW---SAIATHLP-GR-TDNEIKNFWNTHLK  113 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gn-kW---s~IA~~Lp-gR-T~~qcKnRW~~~Lk  113 (348)
                      +-.||+||..+++++++.+|. +|   +.|++.|. .| |..||+.+.+.+.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999996 99   99999984 45 99999998877653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.57  E-value=0.00012  Score=74.53  Aligned_cols=50  Identities=28%  Similarity=0.486  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998           64 DIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (348)
                      .+-...||.+||.+|++++..|| ++|..||.+++.||..+|+.+|.+++-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            34456799999999999999999 999999999999999999999987653

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.26  E-value=8.5e-05  Score=75.49  Aligned_cols=49  Identities=20%  Similarity=0.567  Sum_probs=45.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      +-...||++|+-+|+++++.||.|||..||+.+| .|++..|+++|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            4467899999999999999999999999999999 999999999998765

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.18  E-value=0.00048  Score=62.00  Aligned_cols=52  Identities=13%  Similarity=0.252  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc-------hhhHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 037998           66 KRGKFSQDEEQTILHLHSILGNK-------WSAIATHLPGRTDNEIKNFWNTHLKKKLIQ  118 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~Gnk-------Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~k  118 (348)
                      +...||.|||.+|.+.|-.|=..       +..++..| +||...|.=|||..+||.+..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            45689999999999999887421       89999999 999999999999999988654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.11  E-value=0.00074  Score=62.82  Aligned_cols=101  Identities=20%  Similarity=0.373  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccc--cccccccccccccccCC-CC--------------------CCCCCCH
Q 037998           16 PWTPEEDQKLVEFIQKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLRP-DI--------------------KRGKFSQ   72 (348)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~--~Rs~kqCR~Rw~n~L~p-~i--------------------krg~WT~   72 (348)
                      +|++++|-+|+.+|..-.  +-+.|++.+.+  .-+-+.+.+||+..|.. .+                    .+-+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998776  57777654433  23455667799888633 22                    3458999


Q ss_pred             HHHHHHHHHHHHhCC---chhhHhhh----C-CCCCHHHHHHHHHHHHHHHHHh
Q 037998           73 DEEQTILHLHSILGN---KWSAIATH----L-PGRTDNEIKNFWNTHLKKKLIQ  118 (348)
Q Consensus        73 EED~~Ll~lv~~~Gn---kWs~IA~~----L-pgRT~~qcKnRW~~~Lkk~l~k  118 (348)
                      +||+.|.........   .+.+|-..    | ++||++++.++|..+.+..+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~  132 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP  132 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence            999999997766543   36555432    2 7899999999999777776664

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.01  E-value=0.00068  Score=53.58  Aligned_cols=51  Identities=25%  Similarity=0.492  Sum_probs=34.8

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------chhhHhhhC----CCCCHHHHHHHHHHHHHHHHHh
Q 037998           67 RGKFSQDEEQTILHLHSI------LG--N------KWSAIATHL----PGRTDNEIKNFWNTHLKKKLIQ  118 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~------~G--n------kWs~IA~~L----pgRT~~qcKnRW~~~Lkk~l~k  118 (348)
                      |..||.+|...|++++.+      ++  +      .|..||..|    ..||..||+++|.++.+ .+++
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~-~Yk~   69 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK-KYKK   69 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH-HHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHH
Confidence            357999999999998877      21  1      299999988    46999999999977554 4443

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.73  E-value=0.0021  Score=49.76  Aligned_cols=51  Identities=22%  Similarity=0.437  Sum_probs=33.3

Q ss_pred             CCCCCHHHHHHHHHHHHHh---C-----Cc-hhhHhhhCC-CCCHHHHHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSIL---G-----NK-WSAIATHLP-GRTDNEIKNFWNTHLKKKLI  117 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~---G-----nk-Ws~IA~~Lp-gRT~~qcKnRW~~~Lkk~l~  117 (348)
                      |-+||.|||+.|++.|+++   |     ++ |.++++.-+ .+|-...|+||...|+.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            4579999999999999654   2     22 999999887 99999999999998887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.54  E-value=0.003  Score=66.05  Aligned_cols=46  Identities=15%  Similarity=0.361  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTH  111 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~  111 (348)
                      -++.||++|..+|++.+..||..|.+||.++.+||..||-.+|..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4568999999999999999999999999999999999999988654

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.43  E-value=0.0035  Score=57.08  Aligned_cols=52  Identities=13%  Similarity=0.254  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCc-------hhhHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 037998           65 IKRGKFSQDEEQTILHLHSILGNK-------WSAIATHLPGRTDNEIKNFWNTHLKKKLI  117 (348)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~Gnk-------Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~  117 (348)
                      .+...||.|||.+|.+.|-.|+..       ...++..| +||..+|.-|||..++++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            356789999999999999888743       67777888 99999999999999996643

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.41  E-value=0.0032  Score=64.85  Aligned_cols=44  Identities=18%  Similarity=0.333  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHH
Q 037998           68 GKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTH  111 (348)
Q Consensus        68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~  111 (348)
                      ..||.+|..+|++.++.||..|.+||.|++.||..||--||-++
T Consensus       280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            37999999999999999999999999999999999999999654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.95  E-value=0.0017  Score=58.45  Aligned_cols=50  Identities=30%  Similarity=0.682  Sum_probs=43.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC-C-----CcccccccccccccccccccccccccCC
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGH-G-----SWRALPKLAGLNRCGKSCRLRWTNYLRP   63 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~-~-----~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p   63 (348)
                      .++..||.|||.+|.+.|-+|-- |     .+.++++.++  |++.-|.-||..+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            46789999999999999999932 1     4888888886  9999999999999885

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=95.86  E-value=0.0023  Score=65.83  Aligned_cols=46  Identities=22%  Similarity=0.507  Sum_probs=43.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY   60 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~   60 (348)
                      ....||.+|..+|++.|+.|| .+|.+||+++| +|+.-||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            567999999999999999999 59999999998 99999999999775

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.81  E-value=0.024  Score=44.07  Aligned_cols=49  Identities=27%  Similarity=0.482  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----C-------------chhhHhhhC-----CCCCHHHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILG----N-------------KWSAIATHL-----PGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G----n-------------kWs~IA~~L-----pgRT~~qcKnRW~~~Lkk~  115 (348)
                      ...||.+|...|++++.+|.    +             -|..|+..|     +.||..+++.+|.++....
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            45799999999999998863    1             199999887     4699999999998776543

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=95.48  E-value=0.0073  Score=63.29  Aligned_cols=49  Identities=22%  Similarity=0.512  Sum_probs=44.4

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 037998           10 NGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY   60 (348)
Q Consensus        10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~   60 (348)
                      ...-++.||.+|+.+|+++|++|| .+|.+|+.++| .|+..+|..++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence            345578999999999999999999 69999999998 99999999998764

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.23  E-value=0.0033  Score=49.60  Aligned_cols=48  Identities=29%  Similarity=0.707  Sum_probs=32.4

Q ss_pred             cCCCCHHHHHHHHHHHHHh------C---C--C--Ccccccccc---ccccccccccccccccc
Q 037998           14 KGPWTPEEDQKLVEFIQKH------G---H--G--SWRALPKLA---GLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~------G---~--~--~W~~IAk~l---g~~Rs~kqCR~Rw~n~L   61 (348)
                      +-.||.+|...|++++...      +   .  +  -|..||..+   |..|++.||+.||.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            3579999999999998882      1   1  1  399999754   67899999999998853

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.20  E-value=0.027  Score=55.99  Aligned_cols=48  Identities=25%  Similarity=0.439  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (348)
                      --..|+.+||.+|++.....| ++|..||.+++.|+..+||.+|..+..
T Consensus        62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            345799999999999999999 899999999999999999999977654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=94.10  E-value=0.011  Score=45.77  Aligned_cols=51  Identities=25%  Similarity=0.534  Sum_probs=31.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------CC--cccccccccccccccccccccccccCCC
Q 037998           14 KGPWTPEEDQKLVEFIQKHGH------GS--WRALPKLAGLNRCGKSCRLRWTNYLRPD   64 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~------~~--W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~   64 (348)
                      +-+||.|||+.|+++|..+..      |+  |.++++.-...++-.+-|+||...|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            457999999999999976631      22  8888877623788888999998888764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=93.99  E-value=0.013  Score=58.16  Aligned_cols=48  Identities=19%  Similarity=0.520  Sum_probs=44.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR   62 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~   62 (348)
                      --.|+.+|+-+|+++.+..|-|+|..||..+| .|....|+.+|..++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            35699999999999999999999999999999 9999999999988765

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.52  E-value=0.014  Score=53.17  Aligned_cols=50  Identities=24%  Similarity=0.569  Sum_probs=40.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCC------cccccccccccccccccccccccccCC
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGS------WRALPKLAGLNRCGKSCRLRWTNYLRP   63 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~------W~~IAk~lg~~Rs~kqCR~Rw~n~L~p   63 (348)
                      .++..||.|||.+|.+.|.+|+...      ...++..+  +|+...|..||..+++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vrk   58 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVRK   58 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHHH
Confidence            5788999999999999999997532      45555655  49999999999877764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.40  E-value=0.015  Score=45.13  Aligned_cols=49  Identities=27%  Similarity=0.499  Sum_probs=39.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----ccccccccccccccccc
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGH----------------GSWRALPKLA----GLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~----------------~~W~~IAk~l----g~~Rs~kqCR~Rw~n~L   61 (348)
                      ++..||.+|.+.|+++|.+|..                .-|..|+..+    |..|+..+|+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999822                1399999654    23799999999998854

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=92.71  E-value=0.27  Score=55.86  Aligned_cols=100  Identities=13%  Similarity=0.310  Sum_probs=71.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccc-----------------------------------------
Q 037998           15 GPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSC-----------------------------------------   53 (348)
Q Consensus        15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqC-----------------------------------------   53 (348)
                      ..|+.-+=..++.+..+||-.+-..||..++ +++...+                                         
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588888888889999999777777777663 3443333                                         


Q ss_pred             -------cccccccc--CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhC------------CCCCHHHHHHHHHHH
Q 037998           54 -------RLRWTNYL--RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHL------------PGRTDNEIKNFWNTH  111 (348)
Q Consensus        54 -------R~Rw~n~L--~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~L------------pgRT~~qcKnRW~~~  111 (348)
                             +.-|....  .+..++..||+|||..|+-.+.+|| ++|..|-..+            ..||+.++..|.+++
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                   33332211  1223344699999999999999999 7799985322            689999999999888


Q ss_pred             HHHH
Q 037998          112 LKKK  115 (348)
Q Consensus       112 Lkk~  115 (348)
                      ++-.
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            8654

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.53  E-value=0.32  Score=38.73  Aligned_cols=46  Identities=28%  Similarity=0.482  Sum_probs=35.0

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------chhhHhhhC-----CCCCHHHHHHHHHHHHHH
Q 037998           69 KFSQDEEQTILHLHSIL---GN----------KWSAIATHL-----PGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        69 ~WT~EED~~Ll~lv~~~---Gn----------kWs~IA~~L-----pgRT~~qcKnRW~~~Lkk  114 (348)
                      .||+++++.|++++.+.   |+          -|..|+..|     ...|..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999987543   21          199999887     336889999999665543

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=91.66  E-value=0.2  Score=51.06  Aligned_cols=84  Identities=17%  Similarity=0.279  Sum_probs=63.3

Q ss_pred             CcccccccccccccccccccccccccCCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCchh
Q 037998           36 SWRALPKLAGLNRCGKSCRLRWTNYLRPD-------------------------IKRGKFSQDEEQTILHLHSILGNKWS   90 (348)
Q Consensus        36 ~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~-------------------------ikrg~WT~EED~~Ll~lv~~~GnkWs   90 (348)
                      .|.-++-.. +-|...-.-.||....++.                         ++...||.||-..|+++.+.|.-+|-
T Consensus        75 ~W~w~pFtn-~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTN-SARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCC-ccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            476666444 3566666666777663322                         12246999999999999999999999


Q ss_pred             hHhhh-----CCC-CCHHHHHHHHHHHHHHHHHhcC
Q 037998           91 AIATH-----LPG-RTDNEIKNFWNTHLKKKLIQMG  120 (348)
Q Consensus        91 ~IA~~-----Lpg-RT~~qcKnRW~~~Lkk~l~k~g  120 (348)
                      .||..     ++. ||-.++|.||+..-++-++-..
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~  189 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARA  189 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccC
Confidence            99987     555 9999999999988887776544

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.26  E-value=0.39  Score=41.31  Aligned_cols=52  Identities=25%  Similarity=0.425  Sum_probs=40.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----chhhHhhhC------------CCCCHHHHHHHHHHHHHHH
Q 037998           64 DIKRGKFSQDEEQTILHLHSILGN----KWSAIATHL------------PGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~L------------pgRT~~qcKnRW~~~Lkk~  115 (348)
                      ..++..||++||.-|+-.+.+||-    .|..|-..+            ..||+.++..|-+++++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            455678999999999999999995    698887543            6799999999998887643

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.18  E-value=0.28  Score=48.54  Aligned_cols=48  Identities=19%  Similarity=0.349  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----------CchhhHhhhC----CCCCHHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILG----------NKWSAIATHL----PGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G----------nkWs~IA~~L----pgRT~~qcKnRW~~~Lkk  114 (348)
                      ...|+.+|-..||++..+..          .-|..||..+    --||+.+||++|.++.++
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~  115 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK  115 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            36799999999999876532          2399999966    449999999999776654

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.71  E-value=0.47  Score=48.34  Aligned_cols=47  Identities=26%  Similarity=0.393  Sum_probs=43.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998           69 KFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        69 ~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~  115 (348)
                      +||.+|-++...+...+|..++.|+..+|.|.+.|||.+|.+--|++
T Consensus       367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~n  413 (507)
T COG5118         367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVN  413 (507)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhC
Confidence            69999999999999999999999999999999999999998766654

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=89.01  E-value=0.92  Score=47.21  Aligned_cols=49  Identities=12%  Similarity=0.318  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~  115 (348)
                      ...||.||-.++-++...||.++.+|-+.||.|+-..+..+|+...+.+
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~  235 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR  235 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence            3569999999999999999999999999999999999999998766543

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=81.35  E-value=4.2  Score=29.04  Aligned_cols=42  Identities=24%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998           72 QDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        72 ~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (348)
                      ++++..++.++-..|-.|.+||..+ |.+...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            3677888888888899999999999 99999999887666554

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		4e-26
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		6e-25
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		7e-25
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		2e-24
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-24
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		4e-17
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-12
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		6e-10
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		4e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		5e-09
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		6e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		8e-09
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-08

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  115 bits (288), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Query: 12  LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKF 70
           L KGPWT EEDQK++E ++K+G   W  + K L G  R GK CR RW N+L P++K+  +
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSW 62
Query: 71  SQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           +++E++ I   H +LGN+W+ IA  LPGRTDN +KN WN+ +K+K+
Sbjct: 63  TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  111 bits (278), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/106 (47%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 12  LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKF 70
           L KGPWT EEDQ++++ +QK+G   W  + K L G  R GK CR RW N+L P++K+  +
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 59
Query: 71  SQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           +++E++ I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/106 (47%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 12  LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKF 70
           L KGPWT EEDQ++++ +QK+G   W  + K L G  R GK CR RW N+L P++K+  +
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 59
Query: 71  SQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           +++E++ I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 12  LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKF 70
           L KGPWT EEDQ+++E +QK+G   W  + K L G  R GK CR RW N+L P++K+  +
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 82
Query: 71  SQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           +++E++ I   H  LGN+W+ IA  LPGRTDN +KN WN+ +++K+
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 12  LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKF 70
           L KGPWT EEDQ++++ +QK+G   W  + K L G  R GK CR RW N+L P++K+  +
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSW 113
Query: 71  SQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           +++E++ I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 14  KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLRPDIKRGKFS 71
           KGP+T  ED  + E+++++G  +W   P++     NR  K CR RW N+L P + +  ++
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72  QDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
            +E++TI   +  LG+KWS IA  +PGRTDN IKN WN+ + K++
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 13  KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQ 72
           KK  +TPEED+ L   + +HG   W+ +      NR  + CR RW NYL P I    ++ 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73  DEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNT 110
           +E+  ++      G +W+ IA   PGRTD  IKN W T
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 14  KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQD 73
           K  +T EED KL + + ++G   W  + +L  + R  + CR RW NY+ P ++   +S +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74  EEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFW 108
           E+  +   ++  G KW+ I+  L  R+DN I+N W
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 65  IKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           +K+  ++++E++ I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 39/53 (73%)
Query: 64  DIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           ++K+  ++++E++ +   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ+++E +QK+G   W  + K L G  R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ+L++ +QK+G   W  + K L G  R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ++++ +QK+G   W  + K L G  R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-74
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-73
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	2e-72
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	3e-65
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-62
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	8e-39
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-59
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	3e-31
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-28
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	6e-25
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	5e-18
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-07
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-14
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-06
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-11
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-09
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	7e-11
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-10
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	9e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-10
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	4e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	4e-10
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	9e-10
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	1e-09
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	6e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	5e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-04
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-07
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	7e-07
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	6e-05

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  224 bits (573), Expect = 1e-74
 Identities = 48/105 (45%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 12  LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 71
           L KGPWT EEDQ++++ +QK+G   W  + K     R GK CR RW N+L P++K+  ++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 72  QDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           ++E++ I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  223 bits (570), Expect = 1e-73
 Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 14  KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQD 73
           KGP+T  ED  + E+++++G  +W  +      NR  K CR RW N+L P + +  ++ +
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPR 129
           E++TI   +  LG+KWS IA  +PGRTDN IKN WN+ + K++           P 
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPD 116

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  220 bits (562), Expect = 2e-72
 Identities = 48/106 (45%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 11  GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 70
            L KGPWT EEDQ+++E +QK+G   W  + K     R GK CR RW N+L P++K+  +
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 82

Query: 71  SQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           +++E++ I   H  LGN+W+ IA  LPGRTDN +KN WN+ +++K+
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  201 bits (514), Expect = 3e-65
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 8   DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 67
           +    KK  +TPEED+ L   + +HG   W+ +      NR  + CR RW NYL P I  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISH 62

Query: 68  GKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQ 127
             ++ +E+  ++      G +W+ IA   PGRTD  IKN W T   K  I      + H 
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHH 122

Query: 128 PR 129
             
Sbjct: 123 HH 124

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  195 bits (497), Expect = 2e-62
 Identities = 48/106 (45%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 11  GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 70
            L KGPWT EEDQ++++ +QK+G   W  + K     R GK CR RW N+L P++K+  +
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 71  SQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           +++E++ I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  134 bits (340), Expect = 8e-39
 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 11  GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 70
            L K  WT EED+KL + ++++G   W+ +      NR    C+ RW   L P++ +G +
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPW 61

Query: 71  SQDEEQTILHLHSILGNK-WSAIATHLPGRTDNEIKNFWNTHL 112
           +++E+Q ++ L    G K WS IA HL GR   + +  W+ HL
Sbjct: 62  TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  185 bits (471), Expect = 4e-59
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 14  KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQD 73
           K  +T EED KL + + ++G   W  + +L    R  + CR RW NY+ P ++   +S +
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           E+  +   ++  G KW+ I+  L  R+DN I+N W    + + 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  111 bits (280), Expect = 3e-31
 Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ+L++ +QK+G   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  103 bits (258), Expect = 6e-28
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 10 NGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGK 69
          +  K G W   ED+ L   + K+G   W  +  L    +  K C+ RW  +L P IK+ +
Sbjct: 5  SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTE 63

Query: 70 FSQDEE 75
          +S    
Sbjct: 64 WSGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 94.6 bits (236), Expect = 6e-25
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64
          L K  WT EED+KL + ++++G   W+ +      NR    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 76.1 bits (188), Expect = 5e-18
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 12 LKKGPWTPEEDQKLVEFIQKHGHGSW----RALPKLAGLNRCGKSCRLRWTNYLRPDIK 66
            K  WT EED++L   +++ G   W       P     NR  + C+ RW   L     
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-----NRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 62  RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKKK 115
                + K++ +E++ +  L    G   W  +A+H P RTD + +  W   L   
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRA-LPKLAGLNRCGKSCRLRWTNYLR 62
          K+  W  EED+ L   ++K+G G+W   L      NR     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 66  KRGKFSQDEEQTILHLHSILGN-KWSAIATHLP--GRTDNEIKNFWNTHLKKK 115
           KR  +  +E++ +       G   WS I  H     RT   +K+ W T  K K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 8  DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 67
            +  KK  W+ EE++KL+   +      WR +  + G  R    C   +   L    +R
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 65  IKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
            K+ ++S++EE+ +LHL  ++  +W  IA  + GRT  +    +   L K  
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAA 57

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 56.3 bits (136), Expect = 7e-11
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRA-LPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 71
          K+  W  EED+ L   ++K+G G+W   L      NR     + RW        K    S
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK----KLKLIS 64

Query: 72 QDEE 75
           D E
Sbjct: 65 SDSE 68

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 66  KRGKFSQDEEQTILHLHSILGN-KWSAIATHLP--GRTDNEIKNFWNTHLKKKLIQ 118
           KR  +  +E++ +       G   WS I  H     RT   +K+ W T  K KLI 
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLRPDI 65
          KK  WT EE + +   +QK+G G+W A+ K     NR     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 66  KRGKFSQDEEQTILHLHSILGN-KWSAIATHLP--GRTDNEIKNFWNTHLKKKL 116
           K+ K++ +E + +       G   W+AI+ + P   RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLRPDI 65
          KK  WT EE + +   +QK+G G+W A+ K     NR     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 66  KRGKFSQDEEQTILHLHSILGN-KWSAIATHLP--GRTDNEIKNFWNTHLKKKL 116
           K+ K++ +E + +       G   W+AI+ + P   RT   IK+ W T  +  +
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYLR-----PD 64
           + P++  E + LV+ ++K G G WR +   A     +R     + +W   +      P 
Sbjct: 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 65 IKRGK-FSQDEEQTILHLHSILGNKWS 90
           +RG+   Q+    +L+ H     +  
Sbjct: 72 QRRGEPVPQELLNRVLNAHGYWTQQQM 98

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 55.1 bits (132), Expect = 9e-10
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 13  KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLA---GLNRCGKSCRLRWTNYLR-----PD 64
            + P+T  E + LVE ++  G G WR +   A     +R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 65  IKRGK-FSQDEEQTILHLHSILGNKWSA 91
            +RG    Q+    +L   +      S 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 13  KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYLR-----PD 64
            + P++  E + LVE ++  G G WR +   A     +R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 65  IKRGK-FSQDEEQTILHLHSILGNKWS 90
            +RG+   QD    +L  H+    +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 52.3 bits (125), Expect = 3e-09
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDQKLVEFIQKHGHGSWRALPKLA---GLNRCGKSCRLRWTNYLR-----PDIKR 67
          P++  E + LVE ++  G G WR +   A     +R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GK-FSQDEEQTILHLHSILGNK 88
          G+   QD    +L  H+    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 10 NGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                 WT +E+  L+E +   G G+W+ +       +  + C   +  Y 
Sbjct: 4  GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 66  KRGKFSQDEEQTILHLHSILGNK-WSAIATHLPGRTDNEIKNFWNTHL 112
               ++  EE  +L      G   W  +A  +  +T  E +  +  + 
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG 68
            G +TPEE +KL E   KHG   W  +     L R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAA--LGRSASSVKDRC-RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 66  KRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNT 110
             GK++ +E + +  L    GN W+ I   L GR+ + +K+    
Sbjct: 22  HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL 65

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 54  RLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLK 113
                +  R ++    ++++E  T        G  WSAIA  +  +T ++ KNF+  + K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 114 K 114
           +
Sbjct: 63  R 63

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
               W  +E+  L++  +  G G+W  +    G  R  + CR  +   
Sbjct: 7  GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 62  RPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGI 121
                  K++ +E++      +  G +W+ I+  +  RT  ++K++   + K K+ + G+
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV-KCGL 62

Query: 122 DPMTHQPRT 130
           D  T   +T
Sbjct: 63  DKETPNQKT 71

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQ 72
              WT EE +   + + K G   W  + KL G +R     +     Y      + K   
Sbjct: 8  YSVKWTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYF---KNKVKCGL 62

Query: 73 DEE 75
          D+E
Sbjct: 63 DKE 65

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 13 KKGPWTPEEDQKLVEFIQKH-----GHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 67
           K  +T EED+ +++ ++K+      H  +  +      N  G S R R+  YL   ++ 
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 68 GKFSQDEEQTIL 79
                  + + 
Sbjct: 66 VYEVDKFGKLVR 77

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 63  PDIKRGKFSQDEEQTILHLHSILGNK------WSAIATHLPGRTDNEIKNFWNTHLKKKL 116
           P   +  F+ +E++ IL +      +      +  I+ ++P  T N I++ +  +L K+L
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 44/305 (14%), Positives = 88/305 (28%), Gaps = 81/305 (26%)

Query: 19  PEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTI 78
            +   KL + + +        +  + G    GK+        +  D+         +   
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLG---SGKTW-------VALDV-----CLSYK--- 175

Query: 79  LHLHSILGNK--WSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASL 136
             +   +  K  W  +        +  ++       +       IDP     R+D  +++
Sbjct: 176 --VQCKMDFKIFWLNLKNC--NSPETVLEMLQKLLYQ-------IDPNWTS-RSDHSSNI 223

Query: 137 PHLI--ALANLKDLLENQQ-------IDEQAVRIQAEAVQLAKIQYLQHLLHSAASLNTT 187
              I    A L+ LL+++        +           VQ AK         S   L TT
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLN---------VQNAKA--WNAFNLSCKILLTT 272

Query: 188 TPYGQNGITDMEAFNLTN--SIDPDSSKETPENINSAAAALFSQHLG-NINETPHHSQ-- 242
                  +TD  +   T   S+D  S   TP+       +L  ++L     + P      
Sbjct: 273 R---FKQVTDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPREVLTT 325

Query: 243 -PLH----------YPNPLSHFPDP---QVPFSFQTSLNN---NEMGPCSNSFTMVSQDA 285
            P                  ++      ++    ++SLN     E     +  ++    A
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 286 NYPAD 290
           + P  
Sbjct: 386 HIPTI 390

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 8  DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
           +       WT +E   L+E ++ +    W  + +  G +R    C L +   
Sbjct: 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.86
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.8
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.69
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.68
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.68
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.68
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.67
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.67
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.64
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.61
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.61
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.6
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.59
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.58
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.56
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.56
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.54
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.54
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.54
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.53
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.53
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.51
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.5
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.49
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.48
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.48
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.45
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.45
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.17
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.42
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.36
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.35
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.34
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.34
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.29
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.28
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.26
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.24
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.23
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.22
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.22
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.18
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.78
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.15
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.14
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.08
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.89
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.88
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.87
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.72
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.65
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.53
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.53
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.38
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.37
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.34
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.34
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.16
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.98
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.98
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.89
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	97.88
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.78
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.69
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.84
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.49
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.39
2crg_A	70	Metastasis associated protein MTA3; transcription	97.39
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.26
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.18
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.17
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.95
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.72
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.38
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.15
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.04
2crg_A	70	Metastasis associated protein MTA3; transcription	96.01
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	95.97
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	95.63
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	95.1
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.77
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.7
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	91.94
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	91.27
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	90.12
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	84.6

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.98  E-value=4.7e-33  Score=228.33  Aligned_cols=105  Identities=46%  Similarity=0.936  Sum_probs=99.3

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 037998           11 GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWS   90 (348)
Q Consensus        11 ~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs   90 (348)
                      ++++|+||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++++||+|||++|+++|++||++|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            4789999999999999999999988999999999 599999999999999999999999999999999999999999999


Q ss_pred             hHhhhCCCCCHHHHHHHHHHHHHHHH
Q 037998           91 AIATHLPGRTDNEIKNFWNTHLKKKL  116 (348)
Q Consensus        91 ~IA~~LpgRT~~qcKnRW~~~Lkk~l  116 (348)
                      .||++|||||+++|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=1.3e-32  Score=234.75  Aligned_cols=114  Identities=37%  Similarity=0.699  Sum_probs=107.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHh
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIA   93 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA   93 (348)
                      ||+||+|||++|+++|.+||.++|..||+.+ ++|+++|||+||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            7999999999999999999998999999999 599999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 037998           94 THLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQP  128 (348)
Q Consensus        94 ~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp  128 (348)
                      ++|+|||+++|++||++++++++....++...-.|
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p  115 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP  115 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence            99999999999999999999999888776554333

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=1.8e-32  Score=226.49  Aligned_cols=104  Identities=30%  Similarity=0.617  Sum_probs=100.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHh
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIA   93 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA   93 (348)
                      ||+||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT-TTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc-CCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            6899999999999999999988999999999 499999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHh
Q 037998           94 THLPGRTDNEIKNFWNTHLKKKLIQ  118 (348)
Q Consensus        94 ~~LpgRT~~qcKnRW~~~Lkk~l~k  118 (348)
                      ++|||||+++|++||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999887654

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=7.6e-32  Score=228.84  Aligned_cols=106  Identities=36%  Similarity=0.675  Sum_probs=100.7

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN   87 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn   87 (348)
                      .+.+.++|+||+|||++|+++|++||. +|..||+.+ ++|+++|||+||.++|+|.+++|+||+|||++|+++|++||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF-PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC-TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467889999999999999999999996 999999999 589999999999999999999999999999999999999999


Q ss_pred             chhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998           88 KWSAIATHLPGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk~  115 (348)
                      +|+.||++|+|||+++|++||+.++++.
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999888763

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=5.6e-32  Score=229.61  Aligned_cols=108  Identities=44%  Similarity=0.904  Sum_probs=101.7

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN   87 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn   87 (348)
                      ..+++++|+||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++++||+|||++|+++|++||+
T Consensus        21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~   99 (128)
T 1h8a_C           21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN   99 (128)
T ss_dssp             -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            3578899999999999999999999988999999999 599999999999999999999999999999999999999999


Q ss_pred             chhhHhhhCCCCCHHHHHHHHHHHHHHHH
Q 037998           88 KWSAIATHLPGRTDNEIKNFWNTHLKKKL  116 (348)
Q Consensus        88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l  116 (348)
                      +|+.||++|||||+++|++||+.++++++
T Consensus       100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C          100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999988753

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=3.6e-32  Score=238.40  Aligned_cols=127  Identities=28%  Similarity=0.612  Sum_probs=81.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 037998           11 GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN-KW   89 (348)
Q Consensus        11 ~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn-kW   89 (348)
                      ++++|+||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++++||+|||++|+++|++||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            4689999999999999999999988999999999 589999999999999999999999999999999999999996 69


Q ss_pred             hhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCch
Q 037998           90 SAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPH  138 (348)
Q Consensus        90 s~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~  138 (348)
                      +.||.+|+|||+.||++||+++|.+.+++..|+++++..+..++..++.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999998888777666554

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=8e-30  Score=223.43  Aligned_cols=108  Identities=44%  Similarity=0.898  Sum_probs=102.1

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN   87 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn   87 (348)
                      ..+.+++|+||+|||++|+++|++||.++|..||+.+ ++|+++||+.||.++|+|.+++++||+|||.+|+++|++||+
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            3578899999999999999999999987899999999 699999999999999999999999999999999999999999


Q ss_pred             chhhHhhhCCCCCHHHHHHHHHHHHHHHH
Q 037998           88 KWSAIATHLPGRTDNEIKNFWNTHLKKKL  116 (348)
Q Consensus        88 kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l  116 (348)
                      +|+.||++|||||+++|++||+.++++++
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999999987753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.86  E-value=3.9e-23  Score=175.17  Aligned_cols=100  Identities=23%  Similarity=0.512  Sum_probs=72.8

Q ss_pred             ccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 037998           40 LPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKKKLIQ  118 (348)
Q Consensus        40 IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k  118 (348)
                      ||+.+ ++|+++||+.||.++|+|.+++|+||+|||++|+++|++||. +|..||..|+|||+.||++||+++|.+.+++
T Consensus         1 Ia~~~-~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVI-KNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             Ccccc-CCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            67777 699999999999999999999999999999999999999995 6999999999999999999999999999999


Q ss_pred             cCCCCCCCCccchhhhcCchhh
Q 037998          119 MGIDPMTHQPRTDIFASLPHLI  140 (348)
Q Consensus       119 ~g~dp~e~qp~~dl~~~lp~l~  140 (348)
                      +.|+++++..+..++..++..+
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~~W  101 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGNRW  101 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSCH
T ss_pred             ccCCHHHHHHHHHHHHHHCcCH
Confidence            9999999888887776665433

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=3.9e-21  Score=147.56  Aligned_cols=67  Identities=28%  Similarity=0.603  Sum_probs=63.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHH
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEE   75 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED   75 (348)
                      ..+.+++|+||+|||++|+++|++||.++|..||+.+ ++|+++|||.||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL-HRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS-TTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh-cCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            3578999999999999999999999988999999999 499999999999999999999999999997

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.69  E-value=1.3e-17  Score=130.13  Aligned_cols=58  Identities=21%  Similarity=0.349  Sum_probs=46.7

Q ss_pred             cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHH
Q 037998           53 CRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTH  111 (348)
Q Consensus        53 CR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~  111 (348)
                      +--||.++|+|++++++||+|||++|+++|++||++|+.||+.| |||+++||+||+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 99999999999754

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.68  E-value=5.4e-17  Score=125.24  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=60.4

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 037998           61 LRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTH  126 (348)
Q Consensus        61 L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~  126 (348)
                      .+|.+++++||+|||++|+++|++||++|..||++|+|||++|||+||+.++++.+++ |+++.+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~   67 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP   67 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence            4688999999999999999999999999999999999999999999999999998877 7776654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2.2e-17  Score=126.60  Aligned_cols=65  Identities=20%  Similarity=0.312  Sum_probs=62.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTH  126 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~  126 (348)
                      .+.+++++||+|||++|+++|++|| ++|..||.+|+|||+.||++||+++|++.++++.|+++++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 7999999999999999999999999999999999998875

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.68  E-value=8e-18  Score=142.81  Aligned_cols=83  Identities=23%  Similarity=0.385  Sum_probs=77.4

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccccccccccccccC-----CCCCCC-CCCHHHHHHHH
Q 037998            9 ENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYLR-----PDIKRG-KFSQDEEQTIL   79 (348)
Q Consensus         9 ~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg---~~Rs~kqCR~Rw~n~L~-----p~ikrg-~WT~EED~~Ll   79 (348)
                      ....++++||+|||+.|+++|++||.++|..|++.++   ++|++.+|++||+|+++     |.+++| +|++||+.+|+
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~   91 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL   91 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence            4567899999999999999999999889999998752   58999999999999998     999999 99999999999


Q ss_pred             HHHHHhCCchhh
Q 037998           80 HLHSILGNKWSA   91 (348)
Q Consensus        80 ~lv~~~GnkWs~   91 (348)
                      .+++.+||+|++
T Consensus        92 ~~h~~~gn~~~~  103 (121)
T 2juh_A           92 AAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHccchhc
Confidence            999999999987

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.67  E-value=3.2e-17  Score=152.80  Aligned_cols=105  Identities=23%  Similarity=0.373  Sum_probs=91.4

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCC-----cccccccccccccccccccccccccCCCCC------------------
Q 037998           10 NGLKKGPWTPEEDQKLVEFIQKHGHGS-----WRALPKLAGLNRCGKSCRLRWTNYLRPDIK------------------   66 (348)
Q Consensus        10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~-----W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ik------------------   66 (348)
                      ..++|++||+|||++|+++|++||..+     |..||+.+ +||++.|||.||.++|++.+.                  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L-pGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-PNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-TTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc-CCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            467899999999999999999998542     99999998 699999999999999999986                  


Q ss_pred             -----------CCCCCHHHHHHHHHHHHH-h-------------------------------------------------
Q 037998           67 -----------RGKFSQDEEQTILHLHSI-L-------------------------------------------------   85 (348)
Q Consensus        67 -----------rg~WT~EED~~Ll~lv~~-~-------------------------------------------------   85 (348)
                                 +..||.|||-.|...+++ +                                                 
T Consensus        83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  162 (246)
T 1ign_A           83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT  162 (246)
T ss_dssp             BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred             ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence                       789999999999998876 1                                                 


Q ss_pred             ----C----CchhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998           86 ----G----NKWSAIATHLPGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        86 ----G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~  115 (348)
                          |    ..|..||+.+|+||.+++|+||+..|++.
T Consensus       163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                1    16999999999999999999999888664

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=9.3e-17  Score=121.76  Aligned_cols=61  Identities=25%  Similarity=0.394  Sum_probs=58.2

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 037998           60 YLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGI  121 (348)
Q Consensus        60 ~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~  121 (348)
                      +|+|.+++++||+|||++|+++|++||++|..||+ ++|||++|||+||+++|++.+++..-
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            79999999999999999999999999999999999 88999999999999999999987654

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.64  E-value=5.6e-17  Score=137.81  Aligned_cols=79  Identities=23%  Similarity=0.348  Sum_probs=72.7

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHHH-HHHHHH
Q 037998           10 NGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSQDE-EQTILH   80 (348)
Q Consensus        10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg---~~Rs~kqCR~Rw~n~L-----~p~ikrg~WT~EE-D~~Ll~   80 (348)
                      ...++++||.|||+.|+++|++||.++|..|++.++   .+|++.+|++||+|++     +|.+++|.|+++| +.+|+.
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~  106 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA  106 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence            456789999999999999999999999999998642   5899999999999999     8999999999999 899999


Q ss_pred             HHHHhCCc
Q 037998           81 LHSILGNK   88 (348)
Q Consensus        81 lv~~~Gnk   88 (348)
                      +|+.+|++
T Consensus       107 ~h~~~g~~  114 (122)
T 2roh_A          107 AQAYWSVD  114 (122)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhhH
Confidence            99999975

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=1.1e-16  Score=119.08  Aligned_cols=57  Identities=28%  Similarity=0.568  Sum_probs=53.7

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCC
Q 037998            9 ENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK   66 (348)
Q Consensus         9 ~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ik   66 (348)
                      .+.+++++||+|||++|+++|.+||.++|..||+.+ ++|+++||+.||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC-SSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-cCCCHHHHHHHHHHHcCCccC
Confidence            467899999999999999999999988999999999 599999999999999999876

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.61  E-value=1.2e-16  Score=115.71  Aligned_cols=52  Identities=50%  Similarity=0.970  Sum_probs=49.3

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   64 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~   64 (348)
                      +++|+||+|||++|+++|.+||.++|..||+.+ ++|+++|||.||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence            589999999999999999999987899999999 5999999999999999984

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=3.6e-16  Score=116.26  Aligned_cols=55  Identities=24%  Similarity=0.480  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHHHH
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKKKL  116 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l  116 (348)
                      .|.+++++||+|||++|+++|++|| ++|+.||++|+|||+.||++||+++|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            4788999999999999999999999 699999999999999999999999987654

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.59  E-value=1.4e-15  Score=116.30  Aligned_cols=63  Identities=27%  Similarity=0.348  Sum_probs=57.2

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC--CCCHHHHHHHHHHHHHHHHHhcCCC
Q 037998           60 YLRPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLP--GRTDNEIKNFWNTHLKKKLIQMGID  122 (348)
Q Consensus        60 ~L~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkk~l~k~g~d  122 (348)
                      ...+..++++||+|||++|+++|++|| ++|+.||.+|+  |||+.||++||+++|++.+.+...+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            355678899999999999999999999 79999999999  9999999999999999988776543

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.59  E-value=2e-16  Score=120.99  Aligned_cols=63  Identities=22%  Similarity=0.379  Sum_probs=57.8

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccccccccccccccCCCCCCCCCC
Q 037998            9 ENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLRPDIKRGKFS   71 (348)
Q Consensus         9 ~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~-~Rs~kqCR~Rw~n~L~p~ikrg~WT   71 (348)
                      .+..++++||+|||++|+++|++||.++|..||+.+++ +|+++||++||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            46678999999999999999999998899999999944 8999999999999999999988754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.58  E-value=1.3e-15  Score=110.05  Aligned_cols=50  Identities=26%  Similarity=0.585  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998           65 IKRGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (348)
                      +++++||+|||++|+++|++||. +|+.||++|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 899999999999999999999999864

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.58  E-value=2.1e-16  Score=114.25  Aligned_cols=52  Identities=35%  Similarity=0.801  Sum_probs=47.9

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   64 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~   64 (348)
                      +++|+||+|||++|+++|++||.++|..||+.+ ++|+++||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence            589999999999999999999988999999999 5999999999999999984

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.56  E-value=2.3e-15  Score=108.90  Aligned_cols=50  Identities=32%  Similarity=0.755  Sum_probs=46.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998           65 IKRGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (348)
                      +++++||+|||++|+++|++||. +|..||..|+|||+.||++||+++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 699999999999999999999998864

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.56  E-value=9.5e-16  Score=129.73  Aligned_cols=100  Identities=14%  Similarity=0.212  Sum_probs=81.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCchhhh
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIA  141 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~l~a  141 (348)
                      .+..++|+||+|||++|+++|++||.+|..||+.|+|||..||+.||+++|.+.+.++.|+++++..+..++..++..  
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~--   83 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ--   83 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC--
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC--
Confidence            456789999999999999999999999999999999999999999999999999999999999998888776665542  


Q ss_pred             hcchHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 037998          142 LANLKDLLENQQIDEQAVRIQAEAVQLAKIQYLQ  175 (348)
Q Consensus       142 ~~Nl~~~~~~~q~e~~~~rlq~~a~~~aklq~~q  175 (348)
                                  |..++..+..+....||-.|..
T Consensus        84 ------------W~~Ia~~l~gRt~~~~k~rw~~  105 (126)
T 3osg_A           84 ------------WAIIAKFFPGRTDIHIKNRWVT  105 (126)
T ss_dssp             ------------HHHHHTTSTTCCHHHHHHHHHH
T ss_pred             ------------HHHHHHHcCCCCHHHHHHHHHH
Confidence                        4444444444444555555543

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.54  E-value=1.4e-15  Score=125.13  Aligned_cols=72  Identities=18%  Similarity=0.309  Sum_probs=66.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCch
Q 037998           67 RGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPH  138 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~  138 (348)
                      +|+||+|||++|+++|++||. +|..||..|+|||..||+.||.++|.+.+.++.|+++++..+..++..++.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~   73 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP   73 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc
Confidence            589999999999999999995 799999999999999999999999999999999999999888877776664

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.54  E-value=9.6e-16  Score=125.23  Aligned_cols=75  Identities=23%  Similarity=0.499  Sum_probs=68.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCch
Q 037998           64 DIKRGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPH  138 (348)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~  138 (348)
                      ++++|+||+|||++|+++|++||. +|..||..|+|||..||++||.++|.+.++++.|+++++..+..++..++.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~   76 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN   76 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCC
Confidence            468999999999999999999996 699999999999999999999999999999999999998888777666554

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.54  E-value=6.4e-15  Score=107.15  Aligned_cols=49  Identities=29%  Similarity=0.425  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC--CCCHHHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILG-NKWSAIATHLP--GRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkk  114 (348)
                      ++++||+|||++|+++|++|| ++|+.||..|+  |||+.||++||+++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            578999999999999999999 79999999999  99999999999998864

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.53  E-value=9.9e-16  Score=116.28  Aligned_cols=57  Identities=33%  Similarity=0.486  Sum_probs=49.8

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccCCCCC
Q 037998           10 NGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG-LNRCGKSCRLRWTNYLRPDIK   66 (348)
Q Consensus        10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg-~~Rs~kqCR~Rw~n~L~p~ik   66 (348)
                      ...||++||+|||++|+++|++||.++|..||+.++ .+|+++|||+||.|++++.++
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            345899999999999999999999999999999764 379999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.53  E-value=9.8e-15  Score=108.90  Aligned_cols=52  Identities=15%  Similarity=0.287  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (348)
                      .+.+++++||+|||++|+++|++|| ++|..||++|++||++||++||+++|.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            3578899999999999999999999 899999999999999999999998875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=9.2e-15  Score=113.23  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=54.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILG------NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMG  120 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~G------nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g  120 (348)
                      +|.+++++||+|||++|+++|++||      ++|..||++|+|||++||++||+++|++.++++-
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            5788999999999999999999999      7899999999999999999999999988765543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.50  E-value=1.9e-15  Score=128.55  Aligned_cols=100  Identities=18%  Similarity=0.315  Sum_probs=80.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCchhhhhcch
Q 037998           67 RGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLPHLIALANL  145 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp~l~a~~Nl  145 (348)
                      +|+||+|||++|+++|.+|| ++|..||..|||||..||+.||.++|.+.+.++.|+++++..+..++..++..      
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~------   75 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSK------   75 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSC------
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcC------
Confidence            68999999999999999999 77999999999999999999999999999999999999998888877766643      


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 037998          146 KDLLENQQIDEQAVRIQAEAVQLAKIQYLQHLLHS  180 (348)
Q Consensus       146 ~~~~~~~q~e~~~~rlq~~a~~~aklq~~q~l~~~  180 (348)
                              |..++..+..+....||-.|...|-..
T Consensus        76 --------W~~Ia~~l~gRt~~~~k~rw~~~l~~~  102 (131)
T 3zqc_A           76 --------WSVIAKLIPGRTDNAIKNRWNSSISKR  102 (131)
T ss_dssp             --------HHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred             --------HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence                    444444443344455666666555433

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.49  E-value=2.5e-14  Score=108.57  Aligned_cols=52  Identities=27%  Similarity=0.465  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC--CCCHHHHHHHHHHHHHHHH
Q 037998           65 IKRGKFSQDEEQTILHLHSILG-NKWSAIATHLP--GRTDNEIKNFWNTHLKKKL  116 (348)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp--gRT~~qcKnRW~~~Lkk~l  116 (348)
                      .++++||+|||++|+++|++|| ++|+.||+.++  |||+.||++||++++++.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            5789999999999999999999 68999999975  9999999999999887643

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.48  E-value=5e-15  Score=110.50  Aligned_cols=54  Identities=19%  Similarity=0.509  Sum_probs=50.7

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 037998           10 NGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   64 (348)
Q Consensus        10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~   64 (348)
                      +.+++++||+|||++|+++|++||.++|..||+.+ ++|+++|||.||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH-TTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh-CCCCHHHHHHHHHHHccCC
Confidence            47899999999999999999999988999999999 5999999999999999864

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.48  E-value=4.4e-15  Score=108.00  Aligned_cols=50  Identities=28%  Similarity=0.503  Sum_probs=46.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccccccccccccccC
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLR   62 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~-~Rs~kqCR~Rw~n~L~   62 (348)
                      |+|+||+|||++|+++|++||.++|..||+.+++ +|+++||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            6899999999999999999998899999999944 7999999999999876

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=7.1e-14  Score=103.74  Aligned_cols=50  Identities=22%  Similarity=0.383  Sum_probs=46.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCC-CCCHHHHHHHHHHHH
Q 037998           63 PDIKRGKFSQDEEQTILHLHSILG-NKWSAIATHLP-GRTDNEIKNFWNTHL  112 (348)
Q Consensus        63 p~ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~Lp-gRT~~qcKnRW~~~L  112 (348)
                      ..+.+++||+|||++|+++|++|| ++|..||++|+ +||+.||++||++++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346788999999999999999999 89999999999 999999999998864

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=4.3e-15  Score=112.55  Aligned_cols=58  Identities=22%  Similarity=0.461  Sum_probs=52.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCC
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG   68 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg   68 (348)
                      ..|.+++++||+|||++|+++|+.||. +|..||+ + ++|+++|||.||.++|+|.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~-~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I-IGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H-HSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c-cCcCHHHHHHHHHHHhChHhcCC
Confidence            468899999999999999999999995 9999999 5 46999999999999999877664

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.45  E-value=1.1e-14  Score=108.04  Aligned_cols=51  Identities=20%  Similarity=0.446  Sum_probs=47.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998           11 GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        11 ~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      .+.+++||+|||++|+++|++||.++|..||+.++.+|+++|||.||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999999999999999955899999999999875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.17  E-value=7.7e-15  Score=117.92  Aligned_cols=56  Identities=25%  Similarity=0.283  Sum_probs=53.1

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHH
Q 037998           60 YLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        60 ~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~  115 (348)
                      .+.|.+++|+||+|||++|+++|.+||++|+.||.+|+|||++||++||++++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999998774

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.6e-14  Score=111.82  Aligned_cols=60  Identities=23%  Similarity=0.310  Sum_probs=55.3

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccccccccccccccCCCCCCCC
Q 037998            9 ENGLKKGPWTPEEDQKLVEFIQKHGH-----GSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGK   69 (348)
Q Consensus         9 ~~~lKKG~WT~EEDe~L~~lV~k~G~-----~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~   69 (348)
                      ++.+++++||+|||++|+++|.+||.     ++|..||+.+ ++|+.+|||.||++||.+.++.|.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~-~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-GNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH-SSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhcCC
Confidence            57889999999999999999999996     7899999999 599999999999999998887764

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.36  E-value=6.7e-14  Score=107.86  Aligned_cols=58  Identities=21%  Similarity=0.300  Sum_probs=53.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCC
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR   67 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikr   67 (348)
                      ..|.+++|+||+|||++|+++|++||. +|..||+.+ ++|+..||+.||.+++++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLI-GSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence            467899999999999999999999995 999999999 6999999999999999876665

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.35  E-value=2.4e-13  Score=112.80  Aligned_cols=79  Identities=23%  Similarity=0.381  Sum_probs=67.7

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHHHHHH-HH
Q 037998            9 ENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSQDEEQT-IL   79 (348)
Q Consensus         9 ~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg---~~Rs~kqCR~Rw~n~L-----~p~ikrg~WT~EED~~-Ll   79 (348)
                      ....++++||+|||+.|+++|++||.++|..|++.++   ++|+..+|++||+|++     +|.+++|.-+++|-.. ++
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~   87 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL   87 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence            4678899999999999999999999999999998653   5899999999999998     6999999888877544 77


Q ss_pred             HHHHHhCC
Q 037998           80 HLHSILGN   87 (348)
Q Consensus        80 ~lv~~~Gn   87 (348)
                      ++++.+|+
T Consensus        88 ~~~~~~~~   95 (105)
T 2aje_A           88 NAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776653

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.34  E-value=3.5e-13  Score=107.38  Aligned_cols=69  Identities=28%  Similarity=0.494  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 037998           15 GPWTPEEDQKLVEFIQKHGHGSWRALPKL----AGLNRCGKSCRLRWTNYL-----RPDIKRG-KFSQDEEQTILHLHSI   84 (348)
Q Consensus        15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk~----lg~~Rs~kqCR~Rw~n~L-----~p~ikrg-~WT~EED~~Ll~lv~~   84 (348)
                      ++||+|||+.|+++|++||.|+|..|++.    + ++|++.+|++||+|++     +|.+++| +..++...+++.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999985    4 5899999999999998     6776666 5777888889988865

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.34  E-value=1e-12  Score=102.30  Aligned_cols=52  Identities=12%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (348)
                      .+.+.+++||.|||.+|++++++||    ++|.+||++|||||.+||++||+.+++
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3467889999999999999999999    689999999999999999999987764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.29  E-value=6e-13  Score=103.67  Aligned_cols=57  Identities=28%  Similarity=0.450  Sum_probs=48.4

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCC
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG   68 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg   68 (348)
                      ..|.+++|+||+|||++|+++|++|| .+|..||+.+  +|++.+|+.||.. |....+.|
T Consensus        17 ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~G   73 (73)
T 2llk_A           17 QGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL--GRSASSVKDRCRL-MKDTCNTG   73 (73)
T ss_dssp             --CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH--TSCHHHHHHHHHH-CSCCCSCC
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh--CCCHHHHHHHHHH-HHHHccCC
Confidence            46899999999999999999999999 4799999998  6999999999975 55555443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.28  E-value=2.1e-12  Score=101.77  Aligned_cols=48  Identities=15%  Similarity=0.313  Sum_probs=44.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHH
Q 037998           64 DIKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTH  111 (348)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~  111 (348)
                      ...+++||+|||++|+++|++||++|.+||++|++||+.||++||.++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.26  E-value=8.6e-13  Score=111.93  Aligned_cols=56  Identities=23%  Similarity=0.391  Sum_probs=50.8

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhh----CCCCCHHHHHHHHHHHHHHHH
Q 037998           61 LRPDIKRGKFSQDEEQTILHLHSILGN-KWSAIATH----LPGRTDNEIKNFWNTHLKKKL  116 (348)
Q Consensus        61 L~p~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~l  116 (348)
                      +.+..++++||.|||+.|+++|++||. +|+.|++.    |++||+.+||+||+++++...
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            556788999999999999999999996 99999998    489999999999999998543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.24  E-value=2.6e-12  Score=119.86  Aligned_cols=67  Identities=19%  Similarity=0.338  Sum_probs=56.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 037998           63 PDIKRGKFSQDEEQTILHLHSILGNK------WSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRT  130 (348)
Q Consensus        63 p~ikrg~WT~EED~~Ll~lv~~~Gnk------Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~  130 (348)
                      +.+++++||+|||+.|+++|+++|++      |..||++|||||+++||+||+++|++++... |+..++..+.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li   76 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLV   76 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhh
Confidence            35788999999999999999999975      9999999999999999999999999998744 7666665554

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.23  E-value=1.2e-11  Score=98.47  Aligned_cols=50  Identities=24%  Similarity=0.440  Sum_probs=45.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-chhhHhhh----CCCCCHHHHHHHHHHHHHHHHH
Q 037998           68 GKFSQDEEQTILHLHSILGN-KWSAIATH----LPGRTDNEIKNFWNTHLKKKLI  117 (348)
Q Consensus        68 g~WT~EED~~Ll~lv~~~Gn-kWs~IA~~----LpgRT~~qcKnRW~~~Lkk~l~  117 (348)
                      ++||+|||+.|+++|++||. +|+.|++.    |+|||+++||+||++++++.-.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~   55 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence            47999999999999999996 99999996    8999999999999999986643

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.22  E-value=1.9e-11  Score=99.31  Aligned_cols=60  Identities=20%  Similarity=0.443  Sum_probs=50.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHHHHHHHHHHHHHHH-HHhcCCCCCC
Q 037998           66 KRGKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFWNTHLKKK-LIQMGIDPMT  125 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~-l~k~g~dp~e  125 (348)
                      .+++||.|||.+|++++++||    ++|.+||++|||||.++|++||+.+++.. .+..|..|..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P   71 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFP   71 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence            467899999999999999996    78999999999999999999999988764 5556665543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.22  E-value=3.7e-12  Score=100.40  Aligned_cols=53  Identities=19%  Similarity=0.386  Sum_probs=48.6

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998            7 CDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus         7 c~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      +.+...++++||+|||++|+++|++|| ++|..||+.+| +|+..||+.||.++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP   63 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            356677899999999999999999999 89999999995 899999999999983

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.18  E-value=2.1e-11  Score=101.04  Aligned_cols=53  Identities=23%  Similarity=0.391  Sum_probs=48.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhC----CCCCHHHHHHHHHHHHHHH
Q 037998           63 PDIKRGKFSQDEEQTILHLHSILGN-KWSAIATHL----PGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        63 p~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~L----pgRT~~qcKnRW~~~Lkk~  115 (348)
                      ...++++||.|||+.|+++|++||. +|+.|++.+    ++||+.+||+||+++++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            4567899999999999999999996 999999975    8999999999999998754

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.78  E-value=2.9e-12  Score=102.82  Aligned_cols=54  Identities=22%  Similarity=0.426  Sum_probs=50.2

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP   63 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p   63 (348)
                      ..+.+++|+||+|||++|+++|.+||. +|..||+.+ ++|+..||+.||.++|+.
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l-~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV-GSKTVSQCKNFYFNYKKR   63 (89)
Confidence            467899999999999999999999995 899999999 599999999999999874

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.15  E-value=1.6e-11  Score=104.32  Aligned_cols=54  Identities=20%  Similarity=0.353  Sum_probs=48.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-chhhHhhhC----CCCCHHHHHHHHHHHHHHHH
Q 037998           63 PDIKRGKFSQDEEQTILHLHSILGN-KWSAIATHL----PGRTDNEIKNFWNTHLKKKL  116 (348)
Q Consensus        63 p~ikrg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~L----pgRT~~qcKnRW~~~Lkk~l  116 (348)
                      ...++++||.|||+.|+++|++||. +|+.|++.+    ++||+.+||+||+++++..-
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            3457899999999999999999995 999999874    89999999999999997543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.14  E-value=5.4e-11  Score=89.88  Aligned_cols=49  Identities=20%  Similarity=0.459  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhHh---hhCCCCCHHHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILGNKWSAIA---THLPGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkWs~IA---~~LpgRT~~qcKnRW~~~Lkk  114 (348)
                      ++.+||+|||+.|++.|++||.+|+.|+   ..+++||..++|+||+++.|+
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            5789999999999999999999999999   567999999999999887653

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.08  E-value=1.7e-11  Score=95.48  Aligned_cols=55  Identities=15%  Similarity=0.366  Sum_probs=49.4

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 037998            7 CDENGLKKGPWTPEEDQKLVEFIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR   62 (348)
Q Consensus         7 c~~~~lKKG~WT~EEDe~L~~lV~k~G~---~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~   62 (348)
                      -+++...+++||+|||++|++++.+||.   .+|..||+.+ ++|+.++|+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v-pGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence            3567788999999999999999999993   5899999999 59999999999998765

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.89  E-value=2.3e-09  Score=87.07  Aligned_cols=67  Identities=12%  Similarity=0.168  Sum_probs=60.8

Q ss_pred             ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhC-----CCCCHHHHHHHHHHHHHHHHHhcC
Q 037998           50 GKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHL-----PGRTDNEIKNFWNTHLKKKLIQMG  120 (348)
Q Consensus        50 ~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~L-----pgRT~~qcKnRW~~~Lkk~l~k~g  120 (348)
                      ..=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||+.+.++.++..+
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34567899999986    89999999999999999999999999999     589999999999999998887765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=2.9e-09  Score=79.57  Aligned_cols=47  Identities=9%  Similarity=0.073  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHL  112 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~L  112 (348)
                      ..++||+||++++++++.+||.+|..||..||+||..+|..+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45789999999999999999999999999999999999999997654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.87  E-value=1.8e-09  Score=83.65  Aligned_cols=59  Identities=12%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 037998           64 DIKRGKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDP  123 (348)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp  123 (348)
                      ..+.+.||.||+++|.+++++|+    ++|.+||+.| |||..+|++||+.+++......|..|
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp   67 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVS   67 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCC
Confidence            34578999999999999999997    6799999998 99999999999888766444445444

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.72  E-value=1.4e-09  Score=88.32  Aligned_cols=48  Identities=10%  Similarity=0.337  Sum_probs=43.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccccccc
Q 037998           13 KKGPWTPEEDQKLVEFIQKHG---HGSWRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G---~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      .+++||+|||++|++++.+||   ...|..||+.+ ++|+.++|+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v-pGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS-TTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence            468999999999999999997   35799999999 5999999999998864

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.65  E-value=2.2e-08  Score=92.87  Aligned_cols=49  Identities=14%  Similarity=0.318  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (348)
                      ..++||+||++++++++.+||++|..||+.+++||..|||++|+++.++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999887754

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=2.5e-08  Score=74.45  Aligned_cols=52  Identities=12%  Similarity=0.162  Sum_probs=46.0

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      ++.....++||+||++++++++.+|| .+|..||+.+ ++|+..+|+.+|....
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l-~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYL-ERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHC-TTSCHHHHHHHHHHHT
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHc-CCCCHHHHHHHHHHhc
Confidence            55666779999999999999999999 6999999988 5999999999986543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.53  E-value=1.5e-08  Score=76.47  Aligned_cols=50  Identities=14%  Similarity=0.233  Sum_probs=44.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcccccc---cccccccccccccccccccCC
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPK---LAGLNRCGKSCRLRWTNYLRP   63 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk---~lg~~Rs~kqCR~Rw~n~L~p   63 (348)
                      -++++||+|||+.|++.|++||. +|..|+.   .+ .+|+...+++||++..+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~-~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQ-KGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCC-TTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCc-cCcccchHHHHHHHHHhc
Confidence            37899999999999999999996 9999994   44 589999999999997654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.38  E-value=2.9e-07  Score=68.60  Aligned_cols=47  Identities=26%  Similarity=0.444  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCc-hhhHhh-hCCCCCHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSIL--------GNK-WSAIAT-HLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~--------Gnk-Ws~IA~-~LpgRT~~qcKnRW~~~Lk  113 (348)
                      |.+||+|||+.|++.|.++        |++ |..+++ .++++|-.+||+||..+|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        555 999999 8999999999999988764

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.37  E-value=2.9e-07  Score=71.64  Aligned_cols=46  Identities=17%  Similarity=0.274  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFWNTHL  112 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~L  112 (348)
                      ...||.+|+.+|.+++..|+    ++|..||..++|||..+|+.||..++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46799999999999999998    47999999999999999999997663

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.34  E-value=5.5e-08  Score=75.33  Aligned_cols=52  Identities=17%  Similarity=0.280  Sum_probs=44.8

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccCC
Q 037998           10 NGLKKGPWTPEEDQKLVEFIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLRP   63 (348)
Q Consensus        10 ~~lKKG~WT~EEDe~L~~lV~k~G~---~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p   63 (348)
                      ...+++.||.|||++|.+++.+|+.   +.|..||+.+|  |+.++|+.||..+.+.
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence            3456789999999999999999984   56999999885  9999999999876543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.34  E-value=2.3e-07  Score=94.24  Aligned_cols=45  Identities=16%  Similarity=0.324  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHH
Q 037998           68 GKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHL  112 (348)
Q Consensus        68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~L  112 (348)
                      ..||+||-.++++++.+||.+|..||.++++||..|||++|.++.
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999997543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.16  E-value=3e-07  Score=68.57  Aligned_cols=48  Identities=21%  Similarity=0.456  Sum_probs=42.5

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccccC
Q 037998           14 KGPWTPEEDQKLVEFIQKH--------GHGSWRALPK-LAGLNRCGKSCRLRWTNYLR   62 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~--------G~~~W~~IAk-~lg~~Rs~kqCR~Rw~n~L~   62 (348)
                      +-+||+|||+.|+++|.+|        |..-|..+++ .+ ++++-.+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-TQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-SSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-CCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        4445999999 56 89999999999998875

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=1.4e-05  Score=60.02  Aligned_cols=50  Identities=16%  Similarity=0.258  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhh-CCCCCHHHHHHHHHHH
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILGNKWSAIATH-LPGRTDNEIKNFWNTH  111 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~-LpgRT~~qcKnRW~~~  111 (348)
                      .|.++...||+||-.+..+.+.+||.+|..|+++ |++||..+|..+|+..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            3667788999999999999999999999999995 8999999999988643

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.98  E-value=1.7e-06  Score=80.25  Aligned_cols=49  Identities=29%  Similarity=0.448  Sum_probs=45.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR   62 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~   62 (348)
                      ...++||.||++++++++.+|| ++|..||+.+| +|+..||+.+|.++.+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            4568999999999999999999 79999999995 9999999999998765

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.89  E-value=1.4e-05  Score=64.46  Aligned_cols=46  Identities=17%  Similarity=0.357  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998           69 KFSQDEEQTILHLHSILGN---KWSAIATHLPGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        69 ~WT~EED~~Ll~lv~~~Gn---kWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (348)
                      -||.|||+.|+...++-|.   .|+.||+.|.+|+.+|+++||+.+++=
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            5999999999999999986   699999999999999999999887753

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.88  E-value=2.2e-06  Score=66.70  Aligned_cols=49  Identities=22%  Similarity=0.425  Sum_probs=43.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccCC
Q 037998           14 KGPWTPEEDQKLVEFIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLRP   63 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~---~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p   63 (348)
                      ...||.||+++|.+++..|+.   ++|..||+.+| +|+..+|+.||..+++-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            468999999999999999975   57999999995 89999999999887543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.78  E-value=4.9e-06  Score=64.70  Aligned_cols=43  Identities=21%  Similarity=0.380  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chhhHhhhCCCCCHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGN----KWSAIATHLPGRTDNEIKNFWN  109 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~LpgRT~~qcKnRW~  109 (348)
                      .+.||.+|+++|.++++.|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999983    7999999999999999998873

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.69  E-value=0.0001  Score=59.73  Aligned_cols=61  Identities=13%  Similarity=0.220  Sum_probs=51.8

Q ss_pred             ccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCC-----CCCHHHHHHHHHHHHHHHHHhcC
Q 037998           56 RWTNYLRPDIKRGKFSQDEEQTILHLHSILGNKWSAIATHLP-----GRTDNEIKNFWNTHLKKKLIQMG  120 (348)
Q Consensus        56 Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~Lp-----gRT~~qcKnRW~~~Lkk~l~k~g  120 (348)
                      -|..+|.    ...||.||...|++++++|+-+|..|+..+.     .||-.++|.||+.+.++.++..+
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            3444554    3689999999999999999999999999873     79999999999999988877543

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.84  E-value=6.1e-06  Score=63.25  Aligned_cols=44  Identities=16%  Similarity=0.362  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998           69 KFSQDEEQTILHLHSILGN---KWSAIATHLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        69 ~WT~EED~~Ll~lv~~~Gn---kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (348)
                      .||.|||..|+...++-|.   .|..||+.| +|+++||++||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999996   699999999 9999999999988764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.49  E-value=0.00021  Score=68.96  Aligned_cols=100  Identities=16%  Similarity=0.222  Sum_probs=76.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 037998           15 GPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRL-------RWTNY---------------------------   60 (348)
Q Consensus        15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~-------Rw~n~---------------------------   60 (348)
                      +.||..+...++.++.+||-.+|..||..++ +++...++.       ||...                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999885 565444322       11000                           


Q ss_pred             ----------------cCCCCCCCCCCHHHHHHHHHHHHHhCC----chhhHhh------------hCCCCCHHHHHHHH
Q 037998           61 ----------------LRPDIKRGKFSQDEEQTILHLHSILGN----KWSAIAT------------HLPGRTDNEIKNFW  108 (348)
Q Consensus        61 ----------------L~p~ikrg~WT~EED~~Ll~lv~~~Gn----kWs~IA~------------~LpgRT~~qcKnRW  108 (348)
                                      ..+..+...||++||..|+-.+.+||-    .|..|..            .+..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                            011224457999999999999999994    5999972            34679999999999


Q ss_pred             HHHHHHH
Q 037998          109 NTHLKKK  115 (348)
Q Consensus       109 ~~~Lkk~  115 (348)
                      +++++-.
T Consensus       270 ~tLi~~i  276 (304)
T 1ofc_X          270 NTLITLI  276 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.39  E-value=0.00021  Score=57.64  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTH  111 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~  111 (348)
                      ...||+||.++..+....||.+|..|+..|++||..+|-.+|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            457999999999999999999999999999999999999988654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.39  E-value=0.00029  Score=53.90  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhHhh-hCCCCCHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGNKWSAIAT-HLPGRTDNEIKNFWNT  110 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~-~LpgRT~~qcKnRW~~  110 (348)
                      ...||+||-.+..+.+.+||.+|..|++ .|++||..+|..+|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4579999999999999999999999999 5899999999999873

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.26  E-value=4.9e-05  Score=59.10  Aligned_cols=44  Identities=11%  Similarity=0.333  Sum_probs=38.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccccccccccc
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHG---SWRALPKLAGLNRCGKSCRLRWT   58 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~---~W~~IAk~lg~~Rs~kqCR~Rw~   58 (348)
                      .+.||.||+++|..++.+|+.+   .|..||+.+| +|+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            5689999999999999999753   7999999994 899999999884

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.18  E-value=0.00038  Score=54.56  Aligned_cols=48  Identities=19%  Similarity=0.447  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------chhhHhhhC----CCCCHHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGN----------KWSAIATHL----PGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gn----------kWs~IA~~L----pgRT~~qcKnRW~~~Lkk  114 (348)
                      ...||.+|-..||++..++..          .|..||..|    -.||+.||+.+|.++.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            467999999999999976321          399999987    379999999999776655

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.17  E-value=0.00016  Score=54.14  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=43.6

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTN   59 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk-~lg~~Rs~kqCR~Rw~n   59 (348)
                      ..|.++...||+||-++..+++.+|| .+|..|++ .+ +.|+..+|...|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v-~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELL-PNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSC-TTSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHc-CCCcHHHHHHHHhc
Confidence            35778889999999999999999999 69999998 57 58999999877643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.95  E-value=0.00022  Score=72.58  Aligned_cols=48  Identities=27%  Similarity=0.425  Sum_probs=43.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      ....+||.||.+++++++.+|| .+|..|++.+| +|+..||+..|.++-
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4568999999999999999999 69999999997 999999999987653

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.72  E-value=0.00039  Score=56.29  Aligned_cols=49  Identities=14%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG----LNRCGKSCRLRWTNYL   61 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg----~~Rs~kqCR~Rw~n~L   61 (348)
                      ++.++||.||++.|++++++|+ ..|..|+....    .+|+.-.++.||....
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            5568999999999999999999 79999998883    3688888888886643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.38  E-value=0.00026  Score=55.53  Aligned_cols=49  Identities=22%  Similarity=0.594  Sum_probs=40.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccccccccccccccc
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGH---------GSWRALPKLA---GLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~---------~~W~~IAk~l---g~~Rs~kqCR~Rw~n~L   61 (348)
                      +...||.+|...|+++...+..         .-|..||..+   |..|++.||+.+|.|+.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            5688999999999999976421         1599999764   67899999999998864

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.15  E-value=0.00086  Score=51.41  Aligned_cols=46  Identities=17%  Similarity=0.304  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccccC
Q 037998           15 GPWTPEEDQKLVEFIQKHGH--GSWRALPKLAGLNRCGKSCRLRWTNYLR   62 (348)
Q Consensus        15 G~WT~EEDe~L~~lV~k~G~--~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~   62 (348)
                      -.||.|||..|+..+++.|.  .-|..||+.+  +|+..|+..||+..++
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            46999999999999999986  4799999888  5999999999987654

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.04  E-value=0.0016  Score=52.50  Aligned_cols=43  Identities=14%  Similarity=0.318  Sum_probs=38.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWT   58 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~   58 (348)
                      ...||+||.+++.+....|| .+|..|++.+ ++|+..+|...|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l-~~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFL-ERKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTC-TTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc-CCCCHHHHHHHHh
Confidence            46799999999999999999 6999999988 6999999988664

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.01  E-value=0.0018  Score=49.41  Aligned_cols=45  Identities=13%  Similarity=0.140  Sum_probs=39.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPK-LAGLNRCGKSCRLRWTN   59 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~~~W~~IAk-~lg~~Rs~kqCR~Rw~n   59 (348)
                      ....||+||-++..+++.+|| .+|..|++ .+ ++|+..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v-~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFL-PWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTC-SSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHc-CCCCHHHHHHHHHh
Confidence            456899999999999999999 59999998 57 59999999876643

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=95.97  E-value=0.001  Score=53.70  Aligned_cols=44  Identities=20%  Similarity=0.451  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccc
Q 037998           16 PWTPEEDQKLVEFIQKHGH--GSWRALPKLAGLNRCGKSCRLRWTNY   60 (348)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~--~~W~~IAk~lg~~Rs~kqCR~Rw~n~   60 (348)
                      -||.|||..|+...++.|.  ..|..||+.+| +|+..|+++||+..
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            5999999999999999985  47999999996 89999999998763

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=95.63  E-value=0.035  Score=54.87  Aligned_cols=103  Identities=20%  Similarity=0.263  Sum_probs=74.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc----------------------------------------
Q 037998           15 GPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCR----------------------------------------   54 (348)
Q Consensus        15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR----------------------------------------   54 (348)
                      +.||.-+=..++.++.+||-.+-..||..++.+++...++                                        
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999888888888885344433222                                        


Q ss_pred             --------cccccc-c--CCC-CCCCCCCHHHHHHHHHHHHHhC----CchhhHhhh------------CCCCCHHHHHH
Q 037998           55 --------LRWTNY-L--RPD-IKRGKFSQDEEQTILHLHSILG----NKWSAIATH------------LPGRTDNEIKN  106 (348)
Q Consensus        55 --------~Rw~n~-L--~p~-ikrg~WT~EED~~Ll~lv~~~G----nkWs~IA~~------------LpgRT~~qcKn  106 (348)
                              .-|..+ +  .+. .+...||++||..|+-++-+||    +.|..|-..            +..||+.+|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                    111111 0  010 1345699999999999999999    459999543            36799999999


Q ss_pred             HHHHHHHHHHH
Q 037998          107 FWNTHLKKKLI  117 (348)
Q Consensus       107 RW~~~Lkk~l~  117 (348)
                      |..++++-..+
T Consensus       284 Rc~tLi~~IeK  294 (374)
T 2y9y_A          284 RGNTLLQCLEK  294 (374)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999865433

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=95.10  E-value=0.017  Score=51.56  Aligned_cols=38  Identities=29%  Similarity=0.535  Sum_probs=31.8

Q ss_pred             CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 037998            5 PCCDENGLKKGPWTPEEDQKLVEFIQKHGHGSWRALPK   42 (348)
Q Consensus         5 pcc~~~~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk   42 (348)
                      |++..+.-....||.+||..|+-.|.+||.++|..|-.
T Consensus       125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            55555555566799999999999999999999999865

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.77  E-value=0.08  Score=39.96  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc---hhhHhhhC--CCCCHHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILGNK---WSAIATHL--PGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~Gnk---Ws~IA~~L--pgRT~~qcKnRW~~~Lk  113 (348)
                      .+-.||+|..+..++++.++|..   ++.|.+.|  +|.|..+|+.+.+.+..
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            45679999999999999999954   78999887  78999999998876653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.70  E-value=0.45  Score=45.81  Aligned_cols=47  Identities=13%  Similarity=0.262  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGN-KWSAIATHLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gn-kWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (348)
                      .+.||..|...++.+..+||. .|..||..|+|+|..+|+.+.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~  157 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE  157 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            457999999999999999995 69999999999999999877755543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=91.94  E-value=0.047  Score=44.09  Aligned_cols=48  Identities=15%  Similarity=0.284  Sum_probs=38.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccccccccccccc
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG----LNRCGKSCRLRWTNY   60 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg----~~Rs~kqCR~Rw~n~   60 (348)
                      ++...||.||...|++++++|. ..|..|+....    ..|+.-..++||...
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            5567899999999999999999 69999998763    246666666676553

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=91.27  E-value=0.31  Score=43.34  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=41.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CchhhHhhh--CCCCCHHHHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILG---NKWSAIATH--LPGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G---nkWs~IA~~--LpgRT~~qcKnRW~~~Lkk~  115 (348)
                      ....||+.|-..|+.++.+||   .+|..|+..  |.+||..+++.++...+...
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            446899999999999999999   579999964  78999999998887766543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=90.12  E-value=0.24  Score=46.93  Aligned_cols=28  Identities=43%  Similarity=0.729  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 037998           15 GPWTPEEDQKLVEFIQKHGHGSWRALPK   42 (348)
Q Consensus        15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk   42 (348)
                      ..|+.+||..|+..|.+||.|+|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999964

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=84.60  E-value=0.32  Score=36.68  Aligned_cols=47  Identities=13%  Similarity=0.152  Sum_probs=32.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC--Ccccccccccc-ccccccccccc
Q 037998           11 GLKKGPWTPEEDQKLVEFIQKHGHG--SWRALPKLAGL-NRCGKSCRLRW   57 (348)
Q Consensus        11 ~lKKG~WT~EEDe~L~~lV~k~G~~--~W~~IAk~lg~-~Rs~kqCR~Rw   57 (348)
                      ...+-.||+|..++++++|+..|..  .++.|.+.++. +.+..+++-|.
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL   53 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL   53 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence            4567899999999999999999942  15666666552 34555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	9e-24
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-22
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-11
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-19
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-19
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-18
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-17
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-16
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-13
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-14
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	7e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-14
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	9e-14
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	4e-12
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-11
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-05

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.2 bits (224), Expect = 9e-24
 Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64
          L KGPWT EEDQ+L++ +QK+G   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.6 bits (212), Expect = 4e-22
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64
          K  WT EED+KL + ++++G   W+ +      NR    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (133), Expect = 5e-11
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 67  RGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLK 113
           + +++++E++ +  L    G + W  IA +LP RTD + ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (195), Expect = 1e-19
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLRPDI 65
          KK  WT EE + +   +QK+G G+W A+ K     NR     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (193), Expect = 2e-19
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLR 62
          K+  W  EED+ L   ++K+G G+W  +       NR     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 77.0 bits (189), Expect = 2e-18
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 16 PWTPEEDQKLVEFIQKHGHGSWRALPKLA---GLNRCGKSCRLRWTNYLR-----PDIKR 67
          P++  E + LVE ++  G G WR +   A     +R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 68 GKFSQDEE-QTILHLHSILGNK 88
          G+    +    +L  H+    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.6 bits (183), Expect = 1e-17
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 14 KGPWTPEEDQKLVEFIQKHGHG-----SWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG 68
          K  +T EED+ +++ ++K+         +  +      N  G S R R+  YL   ++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 69 KFSQDEEQTILHLH 82
                 + +    
Sbjct: 60 YEVDKFGKLVRDDD 73

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 3e-16
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQD 73
             WT EE +   + + K G   W  + KL G +R     +     Y +  +K G   + 
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 74 EEQ 76
            Q
Sbjct: 60 PNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 1e-12
 Identities = 10/50 (20%), Positives = 26/50 (52%)

Query: 67  RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKL 116
             K++ +E++      +  G +W+ I+  +  RT  ++K++   + K K+
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.2 bits (164), Expect = 2e-15
 Identities = 21/47 (44%), Positives = 33/47 (70%)

Query: 67  RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLK 113
           +  ++++E++ I   H  LGN+W+ IA  LPGRTDN IKN WN+ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.8 bits (150), Expect = 2e-13
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR 62
          K  WT EED+ + +  ++ G+        L G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 3e-14
 Identities = 7/49 (14%), Positives = 24/49 (48%)

Query: 66  KRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114
              +++ +E+   +      G  + AI+  +  ++  ++KNF+  + ++
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 7e-11
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR 62
              WT EE    V+ I+K+G   ++A+  + G N+     +  + NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRR 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (156), Expect = 3e-14
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGL--NRCGKSCRLRW 57
           + PWT  + + L   +Q++  GS     K+A    ++  + C  R+
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 62  RPDIKRGKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFW 108
           R       ++Q++++ +            + W  IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 9e-14
 Identities = 9/49 (18%), Positives = 18/49 (36%)

Query: 66  KRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKK 114
               +S+ E++T           +  IA+ L  +T  E   ++    K 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 4e-12
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 17 WTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 60
          WT +E+  L+E +   G G+W+ +       +  + C   +  Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 16 PWTPEEDQKLVEFIQKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLRPDIKR 67
          PW+ +E++     +  +   +      +A     R  +  +  +   L  DIK 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 10 NGLKKGPWTPEEDQKLVEFIQKHG--HGSWRALPKLAGLNRCGKSCRLRWTNYLR 62
           G K   WT E D+ ++   Q+ G    ++  + +  G N+       R+   ++
Sbjct: 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELMQ 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 56  RWTNYLRPDIKRGKFSQDEEQTILHLHSILGNK---WSAIATHLPGRTDNEIKNFWNTHL 112
             +       K   ++++ ++ IL +    G +   +S I+  L  +T  E+ + +   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 113 K 113
           +
Sbjct: 82  Q 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.66
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.6
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.59
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.53
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.46
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.42
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.42
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.42
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.41
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.33
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.32
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.32
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.26
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.2
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.2
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.16
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.15
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.11
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.05
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.04
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.02
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.65
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.63
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.42
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.02
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.98
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.4
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.39
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.14
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.86
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.62
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.41
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	93.62
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	91.27
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	90.21
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	89.81
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	87.95

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.8e-19  Score=142.69  Aligned_cols=71  Identities=20%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHh
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHG-----SWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSIL   85 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~-----~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~   85 (348)
                      |++||+|||++|+++|.+||..     +|..||+.+ ++|+++|||.||.++|+|.++++.||++||.+|++.+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~l-pgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-PNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-TTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHc-CCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     399999999 6999999999999999999999999999999988766443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=8.4e-18  Score=121.15  Aligned_cols=52  Identities=50%  Similarity=0.970  Sum_probs=49.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 037998           12 LKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   64 (348)
Q Consensus        12 lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~   64 (348)
                      ++||+||+|||++|+++|++||.++|..||+.+ ++|+++||+.||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCCHHHHHHHHHhhCCCC
Confidence            589999999999999999999988999999999 4999999999999999985

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.3e-16  Score=112.75  Aligned_cols=47  Identities=45%  Similarity=0.940  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (348)
                      +++||+|||++|+++|++||++|+.||.+|||||+++||+||++++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999874

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.5e-16  Score=113.34  Aligned_cols=50  Identities=32%  Similarity=0.767  Sum_probs=47.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998           65 IKRGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (348)
                      +.||+||+|||++|+++|++|| ++|+.||+.|++||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 6899999999999999999999998764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.6e-16  Score=125.54  Aligned_cols=71  Identities=20%  Similarity=0.229  Sum_probs=65.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc------hhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhhhcCc
Q 037998           67 RGKFSQDEEQTILHLHSILGNK------WSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPMTHQPRTDIFASLP  137 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~Gnk------Ws~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~e~qp~~dl~~~lp  137 (348)
                      |+.||+|||++|+++|++||.+      |+.||++|||||++|||+||+++|.+.+++..|+..+++.+.+....+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~li   77 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLI   77 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhccc
Confidence            5899999999999999999964      9999999999999999999999999999999999999999988765543

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=8e-17  Score=114.86  Aligned_cols=50  Identities=34%  Similarity=0.813  Sum_probs=47.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   64 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~   64 (348)
                      |++||+|||++|+++|++||.++|..||+.+ ++|+++||+.||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCCHHHHHHHHHhhCCCC
Confidence            6899999999999999999998999999999 5999999999999999985

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.53  E-value=4.5e-16  Score=121.81  Aligned_cols=74  Identities=24%  Similarity=0.450  Sum_probs=61.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccc---ccccccccccccccccc-----CCCCCCCCCCHHHHHHHHHHHHHhC
Q 037998           15 GPWTPEEDQKLVEFIQKHGHGSWRALPKLA---GLNRCGKSCRLRWTNYL-----RPDIKRGKFSQDEEQTILHLHSILG   86 (348)
Q Consensus        15 G~WT~EEDe~L~~lV~k~G~~~W~~IAk~l---g~~Rs~kqCR~Rw~n~L-----~p~ikrg~WT~EED~~Ll~lv~~~G   86 (348)
                      .+||+|||++|+++|++||.++|..|++.+   +++|+++||++||.|+|     ++..+++.|+++|   |+..|.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999999999999753   36899999999999998     4678899999777   444555555


Q ss_pred             Cchhh
Q 037998           87 NKWSA   91 (348)
Q Consensus        87 nkWs~   91 (348)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            56653

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.8e-15  Score=105.99  Aligned_cols=48  Identities=27%  Similarity=0.610  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~Lkk  114 (348)
                      |++||.|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6799999999999999999999999864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.3e-15  Score=108.37  Aligned_cols=54  Identities=33%  Similarity=0.525  Sum_probs=49.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccCCCCC
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG-LNRCGKSCRLRWTNYLRPDIK   66 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg-~~Rs~kqCR~Rw~n~L~p~ik   66 (348)
                      |+++||+|||++|+++|++||.++|..|++.++ .+|++.||++||+|++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            688999999999999999999999999998743 489999999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.3e-14  Score=101.14  Aligned_cols=50  Identities=26%  Similarity=0.420  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhHhhh--CCCCCHHHHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILG-NKWSAIATH--LPGRTDNEIKNFWNTHLKKK  115 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~--LpgRT~~qcKnRW~~~Lkk~  115 (348)
                      ++++||+|||++|+++|++|| ++|+.||+.  |++||+.||++||++++++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            578999999999999999999 689999998  56999999999999988764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=99.24  Aligned_cols=48  Identities=29%  Similarity=0.446  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhHhhhC--CCCCHHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILG-NKWSAIATHL--PGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~G-nkWs~IA~~L--pgRT~~qcKnRW~~~Lk  113 (348)
                      ++++||+|||+.|+++|.+|| ++|+.|++.+  .+||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999 5899999885  59999999999988754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=102.53  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 037998           67 RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGIDPM  124 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~k~g~dp~  124 (348)
                      ...||+|||.+|++++..||.+|..||++|++||+.+|++||+.++++..+.+.....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            4579999999999999999999999999999999999999999999987766554433

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-14  Score=103.97  Aligned_cols=50  Identities=28%  Similarity=0.470  Sum_probs=45.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccC
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAG-LNRCGKSCRLRWTNYLR   62 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg-~~Rs~kqCR~Rw~n~L~   62 (348)
                      |+++||+|||++|+++|++||.++|..|++.++ .+|++.||++||.|+.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            689999999999999999999999999998653 47999999999998653

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=8.6e-14  Score=97.95  Aligned_cols=47  Identities=28%  Similarity=0.606  Sum_probs=43.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR   62 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~   62 (348)
                      |++||+|||++|+++|++|| .+|..||+.+ ++|++.+|+.||.++++
T Consensus         1 K~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~-~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLL-PGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS-SCHHHHHTTC-TTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHh-hHHHHHHhHc-CCCCHHHHHHHHHHHcC
Confidence            68999999999999999999 5899999999 69999999999998764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.9e-13  Score=93.14  Aligned_cols=43  Identities=19%  Similarity=0.377  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHHHH
Q 037998           69 KFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWNTH  111 (348)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~~~  111 (348)
                      .||.|||++|+++|++|| ++|..||++|++||+.||+.||+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999876

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.6e-14  Score=97.86  Aligned_cols=45  Identities=22%  Similarity=0.651  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998           16 PWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      .||.|||++|+++|++||.++|..||+.+| +|+++|||.||.++.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999999999999995 999999999998863

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.7e-12  Score=93.28  Aligned_cols=50  Identities=12%  Similarity=0.246  Sum_probs=45.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----chhhHhhhCCCCCHHHHHHHHHHH
Q 037998           62 RPDIKRGKFSQDEEQTILHLHSILGN----KWSAIATHLPGRTDNEIKNFWNTH  111 (348)
Q Consensus        62 ~p~ikrg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~LpgRT~~qcKnRW~~~  111 (348)
                      .+...+++||.|||++|+++|.+||.    +|..||.+|||||..||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45567789999999999999999994    599999999999999999999753

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.20  E-value=1.3e-11  Score=91.16  Aligned_cols=49  Identities=18%  Similarity=0.455  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----chhhHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 037998           68 GKFSQDEEQTILHLHSILGN----KWSAIATHLPGRTDNEIKNFWNTHLKKKLI  117 (348)
Q Consensus        68 g~WT~EED~~Ll~lv~~~Gn----kWs~IA~~LpgRT~~qcKnRW~~~Lkk~l~  117 (348)
                      .+||.|||.+|++++++||.    +|.+||.+|||||.+||++||+.++ +.++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~-~dik   54 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV-EDIK   54 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH-HHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHH-HHhh
Confidence            47999999999999999994    5999999999999999999996554 4443

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.20  E-value=1.2e-11  Score=96.22  Aligned_cols=56  Identities=21%  Similarity=0.353  Sum_probs=49.0

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CchhhHhhh----CCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 037998           68 GKFSQDEEQTILHLHSILG-NKWSAIATH----LPGRTDNEIKNFWNTHLKKKLIQMGIDP  123 (348)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G-nkWs~IA~~----LpgRT~~qcKnRW~~~Lkk~l~k~g~dp  123 (348)
                      .+||.|||+.|+++|.+|| ++|+.|++.    +++||+.||++||+++|+.......+..
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~   61 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR   61 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCC
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCccccc
Confidence            3799999999999999999 589999975    6899999999999999988776655543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=2.9e-11  Score=96.44  Aligned_cols=69  Identities=13%  Similarity=0.178  Sum_probs=61.5

Q ss_pred             ccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCc---hhhHhhhCCCCCHHHHHHHHHHHHHH
Q 037998           46 LNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILHLHSILGNK---WSAIATHLPGRTDNEIKNFWNTHLKK  114 (348)
Q Consensus        46 ~~Rs~kqCR~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~Gnk---Ws~IA~~LpgRT~~qcKnRW~~~Lkk  114 (348)
                      +..+..+++.++.+......+...||.|||+.|++.++++|.+   |..||+.|+|||++||++||+.+++-
T Consensus        12 p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_          12 PKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             CCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4567777888888888888888899999999999999999977   99999999999999999999777654

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.6e-12  Score=92.27  Aligned_cols=51  Identities=18%  Similarity=0.445  Sum_probs=46.1

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCC---Cccccccccccccccccccccccc
Q 037998            8 DENGLKKGPWTPEEDQKLVEFIQKHGHG---SWRALPKLAGLNRCGKSCRLRWTN   59 (348)
Q Consensus         8 ~~~~lKKG~WT~EEDe~L~~lV~k~G~~---~W~~IAk~lg~~Rs~kqCR~Rw~n   59 (348)
                      +.+..++++||+|||++|+++|.+||.+   +|..||+.+ ++|+++||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l-~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHc-CCCCHHHHHHHHHH
Confidence            5677889999999999999999999976   499999999 49999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.6e-12  Score=96.17  Aligned_cols=58  Identities=22%  Similarity=0.333  Sum_probs=51.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHH
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQD   73 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~ikrg~WT~E   73 (348)
                      ..+||+|||++|+++|.+|| .+|..||+.+ ++|+..||+.||.+++++..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~-~~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLI-GSRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            36799999999999999999 6999999999 4999999999999999887777765543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=5.7e-11  Score=88.78  Aligned_cols=48  Identities=17%  Similarity=0.140  Sum_probs=43.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHH
Q 037998           65 IKRGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHL  112 (348)
Q Consensus        65 ikrg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~L  112 (348)
                      ....+||+||+++|++++.+||.+|..||.+|||||..||++||+...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999997543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.2e-11  Score=87.75  Aligned_cols=47  Identities=15%  Similarity=0.332  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhHhhhCCCCCHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~LpgRT~~qcKnRW~~~Lk  113 (348)
                      +.+||++|+++|++++..||.+|..||.+|+|||..+|++||+.+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999999999987653

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.02  E-value=6.8e-12  Score=92.75  Aligned_cols=44  Identities=11%  Similarity=0.387  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---ccccccccccccccccccccccc
Q 037998           15 GPWTPEEDQKLVEFIQKHGHGS---WRALPKLAGLNRCGKSCRLRWTN   59 (348)
Q Consensus        15 G~WT~EEDe~L~~lV~k~G~~~---W~~IAk~lg~~Rs~kqCR~Rw~n   59 (348)
                      .+||+|||++|+++|.+||.+.   |..||+.+ ++|++.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l-~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS-TTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHc-CCCCHHHHHHHHHH
Confidence            5899999999999999999764   99999999 59999999999954

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.9e-09  Score=80.30  Aligned_cols=49  Identities=12%  Similarity=0.203  Sum_probs=43.5

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 037998           11 GLKKGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        11 ~lKKG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      ..+..+||+|||++|++++.+|| .+|..||+.+ ++|+..||+.+|....
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~-~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHP-KNFGLIASFL-ERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHT-TTSCHHHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence            34558899999999999999999 6999999999 5999999999997643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.4e-09  Score=78.94  Aligned_cols=47  Identities=28%  Similarity=0.424  Sum_probs=42.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR   62 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~   62 (348)
                      ..+||+|||++|.+++.+|| .+|..||+.+ ++|+..+|+.+|.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~-~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVI-GNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHH-SSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHc-CCCCHHHHHHHHHHHHh
Confidence            46799999999999999999 6899999999 59999999999988754

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=1.7e-08  Score=80.16  Aligned_cols=51  Identities=20%  Similarity=0.348  Sum_probs=43.8

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCC--ccccccccccccccccccccccccc
Q 037998           10 NGLKKGPWTPEEDQKLVEFIQKHGHGS--WRALPKLAGLNRCGKSCRLRWTNYL   61 (348)
Q Consensus        10 ~~lKKG~WT~EEDe~L~~lV~k~G~~~--W~~IAk~lg~~Rs~kqCR~Rw~n~L   61 (348)
                      .+.+...||.|||+.|++.++++|...  |..|++.+ .+|++.+||.||...+
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L-~~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL-GNKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-SSCCHHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence            445678899999999999999999532  99999999 4899999999997643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=3.8e-06  Score=60.26  Aligned_cols=44  Identities=16%  Similarity=0.256  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhHhhh-CCCCCHHHHHHHHHHH
Q 037998           68 GKFSQDEEQTILHLHSILGNKWSAIATH-LPGRTDNEIKNFWNTH  111 (348)
Q Consensus        68 g~WT~EED~~Ll~lv~~~GnkWs~IA~~-LpgRT~~qcKnRW~~~  111 (348)
                      ..||+||..+..+++..||.+|..|++. +|+||..+|.++|+..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3699999999999999999999999986 5999999999999643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=4.3e-06  Score=60.70  Aligned_cols=43  Identities=14%  Similarity=0.324  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CchhhHhhhCCCCCHHHHHHHHHHH
Q 037998           68 GKFSQDEEQTILHLHSILG----NKWSAIATHLPGRTDNEIKNFWNTH  111 (348)
Q Consensus        68 g~WT~EED~~Ll~lv~~~G----nkWs~IA~~LpgRT~~qcKnRW~~~  111 (348)
                      +.||.||+.+|.+++.+|.    .+|.+||..+ |||..+|..|++.+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            4799999999999999996    5799999999 99999999999543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=1e-05  Score=58.70  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccccccccccccc
Q 037998           15 GPWTPEEDQKLVEFIQKHGHG---SWRALPKLAGLNRCGKSCRLRWTNY   60 (348)
Q Consensus        15 G~WT~EEDe~L~~lV~k~G~~---~W~~IAk~lg~~Rs~kqCR~Rw~n~   60 (348)
                      +.||.||+++|.+++.+|..+   .|..||+.+|  |+.++|..||..+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            579999999999999999753   5999999996  9999999998754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=1.9e-05  Score=56.46  Aligned_cols=44  Identities=14%  Similarity=0.112  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 037998           16 PWTPEEDQKLVEFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNY   60 (348)
Q Consensus        16 ~WT~EEDe~L~~lV~k~G~~~W~~IAk~lg~~Rs~kqCR~Rw~n~   60 (348)
                      .||.||-+++.+++..|| .+|..|++.+.++|+..+|...|.+.
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            699999999999999999 69999998655799999999877653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00024  Score=51.22  Aligned_cols=47  Identities=23%  Similarity=0.401  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-hhhHhh-hCCCCCHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILG--------NK-WSAIAT-HLPGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~G--------nk-Ws~IA~-~LpgRT~~qcKnRW~~~Lk  113 (348)
                      |-+||.|||+.|++.|+++.        +. |..+++ .++.+|-.+.|+||..+||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999863        22 999995 6799999999999988774

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.86  E-value=0.0013  Score=48.06  Aligned_cols=47  Identities=13%  Similarity=0.123  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCch---hhHhhhC--CCCCHHHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGNKW---SAIATHL--PGRTDNEIKNFWNTHLK  113 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkW---s~IA~~L--pgRT~~qcKnRW~~~Lk  113 (348)
                      +-.||+||.+..++++..+|..|   +.|...|  +++|..+|+.+.+.+.-
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl   58 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999887   4677664  89999999988876643

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.0026  Score=43.21  Aligned_cols=45  Identities=22%  Similarity=0.493  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhHhhhC---CCCCHHHHHHHHHHH
Q 037998           67 RGKFSQDEEQTILHLHSILGNKWSAIATHL---PGRTDNEIKNFWNTH  111 (348)
Q Consensus        67 rg~WT~EED~~Ll~lv~~~GnkWs~IA~~L---pgRT~~qcKnRW~~~  111 (348)
                      |..||+||-.-|.+.|+.+|+.|..|-=.+   +||+..++..+|+.+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            357999999999999999999999998554   899999999888764

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.00094  Score=48.01  Aligned_cols=48  Identities=19%  Similarity=0.409  Sum_probs=38.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------Ccccccc-cccccccccccccccccccC
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHG--------SWRALPK-LAGLNRCGKSCRLRWTNYLR   62 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~--------~W~~IAk-~lg~~Rs~kqCR~Rw~n~L~   62 (348)
                      +-+||.|||+.|+++|.++...        =|..+++ .+ +.++-.+-|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~-~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-TQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-SSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcC-CCCCHHHHHHHHHHHhc
Confidence            4579999999999999998432        2888885 44 68999999999988765

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.41  E-value=0.0024  Score=46.52  Aligned_cols=50  Identities=12%  Similarity=0.159  Sum_probs=36.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCc--cccccccc-ccccccccccccccc
Q 037998           11 GLKKGPWTPEEDQKLVEFIQKHGHGSW--RALPKLAG-LNRCGKSCRLRWTNY   60 (348)
Q Consensus        11 ~lKKG~WT~EEDe~L~~lV~k~G~~~W--~~IAk~lg-~~Rs~kqCR~Rw~n~   60 (348)
                      ...+-.||+||.++++++|+.+|.+.|  +.|.+.++ ++++..+|+-+.+.|
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            345678999999999999999996444  45666554 367777777665443

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.062  Score=39.40  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----chhhHhhhCCCCCHHHHHHHHHHHH
Q 037998           66 KRGKFSQDEEQTILHLHSILGN----KWSAIATHLPGRTDNEIKNFWNTHL  112 (348)
Q Consensus        66 krg~WT~EED~~Ll~lv~~~Gn----kWs~IA~~LpgRT~~qcKnRW~~~L  112 (348)
                      ..+.|+++|=++|-.++..+..    -|..||..+..||..+|...|...+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~   57 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCc
Confidence            3468999999998888887762    3999999999999999999887654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.27  E-value=0.29  Score=33.75  Aligned_cols=41  Identities=15%  Similarity=0.347  Sum_probs=37.0

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhHhhhCCCCCHHHHHHHHH
Q 037998           69 KFSQDEEQTILHLHSILG-NKWSAIATHLPGRTDNEIKNFWN  109 (348)
Q Consensus        69 ~WT~EED~~Ll~lv~~~G-nkWs~IA~~LpgRT~~qcKnRW~  109 (348)
                      .|+.-|=+.++++..+|| .+-..||..|.|+|..+|+.+..
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHH
Confidence            499999999999999999 47999999999999999987653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.21  E-value=0.065  Score=39.31  Aligned_cols=51  Identities=22%  Similarity=0.404  Sum_probs=43.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccCCC
Q 037998           13 KKGPWTPEEDQKLVEFIQKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLRPD   64 (348)
Q Consensus        13 KKG~WT~EEDe~L~~lV~k~G~---~~W~~IAk~lg~~Rs~kqCR~Rw~n~L~p~   64 (348)
                      ..+.|+.+|=++|-.++.....   +-|..||-.+| .|++-.|...|...++..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCcccc
Confidence            3579999999999999987643   56999999998 999999999998776543

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.81  E-value=0.24  Score=40.07  Aligned_cols=54  Identities=19%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-Cc---hhhHhhh------------CCCCCHHHHHHHHHHHHHHHHH
Q 037998           64 DIKRGKFSQDEEQTILHLHSILG-NK---WSAIATH------------LPGRTDNEIKNFWNTHLKKKLI  117 (348)
Q Consensus        64 ~ikrg~WT~EED~~Ll~lv~~~G-nk---Ws~IA~~------------LpgRT~~qcKnRW~~~Lkk~l~  117 (348)
                      ..++..+|+|||.-|+-.+.+|| ++   |..|-..            +..||+.++..|.+++++-..+
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~k  115 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER  115 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHH
Confidence            34445699999999999999999 44   9887532            2679999999999988875443

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.95  E-value=0.058  Score=36.40  Aligned_cols=45  Identities=16%  Similarity=0.216  Sum_probs=34.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccccc--ccccccccccccccc
Q 037998           14 KGPWTPEEDQKLVEFIQKHGHGSWRALPKLA--GLNRCGKSCRLRWTN   59 (348)
Q Consensus        14 KG~WT~EEDe~L~~lV~k~G~~~W~~IAk~l--g~~Rs~kqCR~Rw~n   59 (348)
                      +..||.||-.-|...|+++| ..|..|-=..  .++|+......+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            45799999999999999999 6999996433  346877766665543