Citrus Sinensis ID: 038013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----
Protein Sequence
MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALREESSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDVTSKQKDPITSSGNSDNPKTLSVDRETRSLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSITASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPASTEKEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKSDHRNYIAETSEVLQANPAALSRSLNFHERHN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHcccccccccccccccccccccEEEEccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHcccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHcccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEccHHHHHHcHHHHHcccccccccccccccEcccccccccccccccccHHHHccHHHHHccccHHHccc
Coil and Loop (DISEMBL)
MSEVKDSAIKLFGQMIPLSLLKFQqqqgpetlandhsasdddhhqeaccdrnpetalreesSNKQQQQQQQQQQRDDKEHSGQQIIEdehedvtskqkdpitssgnsdnpktlsvdretrslksskngeqsetsnsqektlkkpdkilpcprcnsmdtkfcyynnynvnqprhfckncqrywtaggtmrnvpvgagrrknksssasNYRQIMISEALRTFQanasggvykpysgnngtiltfgsdsplhesvasvpnlsdksqnclrngfhrseQKILvsgtdngssitassslekggnctsqdirtknyrgsvpqvpyfpgppwphhwntpmpppgfypsgfpvsfypettywgcavpgycnmpcvppnaslqsqfvpktlstptlgkhsrdgdiitpastekeepstgsrnsercvlvpktlriddpseaaKSSIWATLgiknekttsageclfkgfqsksdhrnyIAETSEVLQANPaalsrslnfherhn
Flexible Loop (DISEMBL)
MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALREESSNKQQQQQQQQQQRDDKEHSGQQIIedehedvtskqkdpitssgnsdnpktlsvdretrslksskngeqsetsnsqektlkkpdkilpCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGtmrnvpvgagrrknksssasNYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSsitassslekggnCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLstptlgkhsrdgdiitpastekeepstgsrnsercvlvpktlriddpseaakssiwatlgiknekttsagECLFKGFQSKSDHRNYIAETsevlqanpaalsrslnfherhn
Low Complexity Region (SEG)
MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANdhsasdddhhQEACCDRNPETALREESSNKqqqqqqqqqqRDDKEHSGQQIIEDEHEDVTSKQKDPITSSGNSDNPKTLSVDRETRSLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSITASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPASTEKEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKSDHRNYIAETSEVLQANPAALSRSLNFHERHN
Disordered region (IsUnstruct)
********IKLFGQMIPLSLLK****************************************************************************************************************************ILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNV******************QIMISEALRTFQANASGGVYKPYSGNNGTILTF***********************************************************************VPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVPP************************************************VLV***************SIWATLGIKNEKTTSAGECLFKGF***********************************
Disordered Region (DISOPRED)
****KDS*IKLFGQMIPLSLLKFQ*******************************************************************************************************************************RCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNV******************************************************************************************************************************PYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNM*******************************************************VPKTLRIDDPSEAAKSSIWATLGIKNEK*****************************QANPAALSRS*NF*****
Disordered Region (DISEMBL)
MSEVKDSAIKLFGQMIPLSLLKFQ***********************CCDRNPE*****************************QIIEDE***************************************************LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVG************NYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSITA**********TSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPAS*************ERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKSDHRNYIAETSEVLQANPAALSRSLNFHERHN
Disordered Region (DISPRO)
****KDSAIKLFGQMIPLSLL***********************************************************************************************************************LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVG**********************************YKP*****GTILTFGSDSPLHESVASVPNLS*KS**********************************************NYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVP**********************************************ERCVLVPKTLRIDDPSEAAKSSIWATLGIKNE************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETAxxxxxxxxxxxxxxxxxxxxxKEHSGQQIIEDEHEDVTSKQKDPITSSGNSDNPKTLSVDRETRSLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSITASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPASTEKEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKSDHRNYIAETSEVLQANPAALSRSLNFHERHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	494	2.2.26 [Sep-21-2011]
Q93ZL5	457	Cyclic dof factor 2 OS=Ar	yes	no	0.864	0.934	0.406	3e-78
Q8LFV3	448	Cyclic dof factor 3 OS=Ar	no	no	0.854	0.941	0.405	3e-76
Q8W1E3	298	Cyclic dof factor 1 OS=Ar	no	no	0.554	0.919	0.425	3e-59
Q9SEZ3	399	Cyclic dof factor 5 OS=Ar	no	no	0.769	0.952	0.341	5e-55
Q9LQX4	366	Dof zinc finger protein D	no	no	0.580	0.784	0.362	1e-43
P68350	175	Dof zinc finger protein D	no	no	0.121	0.342	0.85	2e-28
O22967	170	Cyclic dof factor 4 OS=Ar	no	no	0.188	0.547	0.591	1e-27
Q8LDR0	307	Dof zinc finger protein D	no	no	0.113	0.182	0.767	2e-22
Q84TE9	257	Dof zinc finger protein D	no	no	0.137	0.264	0.632	5e-22
P38564	238	Dof zinc finger protein M	N/A	no	0.141	0.294	0.671	1e-21

>sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 210/516 (40%), Positives = 274/516 (53%), Gaps = 89/516 (17%)

Query: 4   VKDSAIKLFGQMIPLSLLK-----------FQQQQGPETLANDHSASDDDHHQEACCDRN 52
           + D AIKLFG+ IPL  L              + Q P  L++  +  DDD          
Sbjct: 1   MADPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGR 60

Query: 53  PETALREESSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDVTSKQKDPITSSGNSDNPKT 112
            E     +   + +  +++++  + +E S    + +E  DVT+      T+SG       
Sbjct: 61  EEGDDVGDGGGESETDKKEEKDSECQEES----LRNESNDVTT------TTSG------- 103

Query: 113 LSVDRETRSLKSSKNGEQSE-TSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQP 171
             +  +T + K++K  E+S  T+ SQE  LKKPDKILPCPRCNSM+TKFCYYNNYNVNQP
Sbjct: 104 --ITEKTETTKAAKTNEESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQP 161

Query: 172 RHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKP 231
           RHFCK CQRYWTAGGTMRNVPVGAGRRKNKS ++   R + I+ A    Q  A   +  P
Sbjct: 162 RHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSPASHYNRHVSITSA-EAMQKVARTDLQHP 220

Query: 232 YSGNNGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSITAS 291
              N   +LTFGSDS L ES+AS  NL +KS           + + ++   + G  IT  
Sbjct: 221 ---NGANLLTFGSDSVLCESMASGLNLVEKS---------LLKTQTVLQEPNEGLKITVP 268

Query: 292 SSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPP--WPHHWNTPMPPPGFYPSGFPVSFYP 349
                  N T+++  T +    +P+VP FPGPP  WP+ WN      G   +  P  FYP
Sbjct: 269 L------NQTNEEAGTVS---PLPKVPCFPGPPPTWPYAWN------GVSWTILP--FYP 311

Query: 350 ETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLS-------TPTLGKHSRDGDIITPAST 402
              YW C        P V P A     ++P+  S       +PTLGKHSRD +   P + 
Sbjct: 312 PPAYWSC--------PGVSPGAWNSFTWMPQPNSPSGSNPNSPTLGKHSRDENAAEPGTA 363

Query: 403 EKEEPSTGSRNS--ERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQ 460
             E  S G   S  ERC+ VPKTLRIDDP EAAKSSIW TLGIK ++        F  F+
Sbjct: 364 FDETESLGREKSKPERCLWVPKTLRIDDPEEAAKSSIWETLGIKKDENADT----FGAFR 419

Query: 461 SKSDHRNYIAE-----TSEVLQANPAALSRSLNFHE 491
           S +  ++ ++E         LQANPAALSRS NFHE
Sbjct: 420 SSTKEKSSLSEGRLPGRRPELQANPAALSRSANFHE 455

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2

 Score =  286 bits (732), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 209/516 (40%), Positives = 265/516 (51%), Gaps = 94/516 (18%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALREE 60
           M E +D AIKLFG  IP           P    +  +  DD+    +  D      +  E
Sbjct: 2   MMETRDPAIKLFGMKIPF----------PSVFESAVTVEDDEEDDWSGGDDKSPEKVTPE 51

Query: 61  SSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDVTSKQKDPITSSGNSDNPKTLSVDRETR 120
            S+K           + K                               P+TL  +  T 
Sbjct: 52  LSDKNNNNCNDNSFNNSK-------------------------------PETLDKEEATS 80

Query: 121 S--LKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNC 178
           +  ++SS   E ++ +    KTLKKP KILPCPRC SM+TKFCYYNNYN+NQPRHFCK C
Sbjct: 81  TDQIESSDTPEDNQQTTPDGKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKAC 140

Query: 179 QRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGT 238
           QRYWTAGGTMRNVPVGAGRRKNKSSS S+YR I ISEAL   + +       P    N  
Sbjct: 141 QRYWTAGGTMRNVPVGAGRRKNKSSS-SHYRHITISEALEAARLD-------PGLQANTR 192

Query: 239 ILTFGSDS-PLHESVASVPNL----SDKSQNCLRNGFHRSEQKILVSGTDNGSSITASSS 293
           +L+FG ++   H +    P +      K  N  RN FH    + LV+  +NG   ++ SS
Sbjct: 193 VLSFGLEAQQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVARVENGDDCSSGSS 252

Query: 294 LEKGGNCTSQDIRTKNYRGSVPQV-------------PYFPGPPWPHHWNTPM-PPPGFY 339
           +    N +  + R ++  GSV +                 PG PWP+ WN  M PP  + 
Sbjct: 253 VTTSNNHSVDESRAQS--GSVVEAQMNNNNNNNMNGYACIPGVPWPYTWNPAMPPPGFYP 310

Query: 340 PSGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQ--SQFVPKTLSTPTLGKHSRDGDII 397
           P G+P+ FYP   YW         +P +PP+ S    SQ    T ++PTLGKH RD    
Sbjct: 311 PPGYPMPFYP---YW--------TIPMLPPHQSSSPISQKCSNT-NSPTLGKHPRD---- 354

Query: 398 TPASTEKEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFK 457
               + K++  T  +    CVLVPKTLRIDDP+EAAKSSIW TLGIKNE    AG  +FK
Sbjct: 355 --EGSSKKDNETERKQKAGCVLVPKTLRIDDPNEAAKSSIWTTLGIKNEAMCKAG-GMFK 411

Query: 458 GFQSKSD-HRNYIAETSEVLQANPAALSRSLNFHER 492
           GF  K+  + N  AE S VL ANPAALSRS NFHE+
Sbjct: 412 GFDHKTKMYNNDKAENSPVLSANPAALSRSHNFHEQ 447

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W1E3|CDF1_ARATH Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 165/388 (42%), Positives = 194/388 (50%), Gaps = 114/388 (29%)

Query: 110 PKTLSVDRETRSLKSSKNGEQSETSNSQ-EKTLKKPDKILPCPRCNSMDTKFCYYNNYNV 168
           P  L V  E    +  KN  ++ T  S+ +KTLKKP KILPCPRCNSM+TKFCYYNNYNV
Sbjct: 19  PTVLEVADE----EEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCYYNNYNV 74

Query: 169 NQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS-ASNYRQIMISEALRTFQANASGG 227
           NQPRHFCK CQRYWT+GGTMR+VP+GAGRRKNK++S  S+Y  + ISE            
Sbjct: 75  NQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISET----------- 123

Query: 228 VYKPYSGNNGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSS 287
                   NG +L+F               L D  Q    N F   +    +   D  S+
Sbjct: 124 --------NGPVLSFS--------------LGD-DQKVSSNRFGNQKLVARIENNDERSN 160

Query: 288 ITASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSF 347
              S+ L    NC                   FPG  WP+ WN     P FYP       
Sbjct: 161 NNTSNGL----NC-------------------FPGVSWPYTWN-----PAFYP------V 186

Query: 348 YPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPASTEKEEP 407
           YP   YW                          +  T TLGKHSRD D      T K++ 
Sbjct: 187 YP---YWSMP----------------VLSSPVSSSPTSTLGKHSRDED-----ETVKQKQ 222

Query: 408 STGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKSDHR- 466
             GS      VLVPKTLRIDDP+EAAKSSIW TLGIKN       E +F GF SK + + 
Sbjct: 223 RNGS------VLVPKTLRIDDPNEAAKSSIWTTLGIKN-------EVMFNGFGSKKEVKL 269

Query: 467 --NYIAETSEVLQANPAALSRSLNFHER 492
                 ETS VL ANPAALSRS+NFHE+
Sbjct: 270 SNKEETETSLVLCANPAALSRSINFHEQ 297

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEZ3|CDF5_ARATH Cyclic dof factor 5 OS=Arabidopsis thaliana GN=CDF5 PE=2 SV=1

 Score =  215 bits (548), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 173/506 (34%), Positives = 245/506 (48%), Gaps = 126/506 (24%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALREE 60
           MS+ +D+ IKLFG+ I  SLL                          C D +  + + + 
Sbjct: 1   MSKSRDTEIKLFGRTI-TSLLDVN-----------------------CYDPSSLSPVHDV 36

Query: 61  SSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDVTSKQKDPITSSGNSDNPKTLSVDRETR 120
           SS+  ++                ++   + E  ++K KDP   S  ++ PK +S   E  
Sbjct: 37  SSDPSKEDSSSSSSSCSPTIGPIRVPVKKSEQESNKFKDPYILSDLNEPPKAVS---EIS 93

Query: 121 SLKSSKNG--EQSETSNS---------QEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVN 169
           S +SSKN   +QSE + +         +   LKKPDK++PCPRC S +TKFCYYNNYNVN
Sbjct: 94  SPRSSKNNCDQQSEITTTTTTSTTSGEKSTALKKPDKLIPCPRCESANTKFCYYNNYNVN 153

Query: 170 QPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVY 229
           QPR+FC+NCQRYWTAGG+MRNVPVG+GRRKNK   +SN+   + SE              
Sbjct: 154 QPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGWPSSNHYLQVTSEDCD----------- 202

Query: 230 KPYSGNNGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSIT 289
              + N+GTIL+FGS      S +SV             G H+S     +S         
Sbjct: 203 ---NNNSGTILSFGS------SESSV----------TETGKHQSGDTAKIS--------- 234

Query: 290 ASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFP--GPPWPHHWNTPMPPPGFYPSGFPVSF 347
                    +  SQ+   K+Y+G +P     P    PWP+ W+         P+G   SF
Sbjct: 235 --------ADSVSQE--NKSYQGFLPPQVMLPNNSSPWPYQWS---------PTGPNASF 275

Query: 348 YPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPASTEKEEP 407
           YP   YWGC VP Y                 P + ++  LGK SRD       +  +   
Sbjct: 276 YPVPFYWGCTVPIY-----------------PTSETSSCLGKRSRD------QTEGRIND 312

Query: 408 STGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSK--SDH 465
           +  +  + R  LV ++LR++   EA+KS++W+ L  K EK T  G  LF GF +K  S+ 
Sbjct: 313 TNTTITTTRARLVSESLRMN--IEASKSAVWSKLPTKPEKKT-QGFSLFNGFDTKGNSNR 369

Query: 466 RNYIAETSEVLQANPAALSRSLNFHE 491
            + ++ETS  LQANPAA+SR++NF E
Sbjct: 370 SSLVSETSHSLQANPAAMSRAMNFRE 395

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQX4|DOF13_ARATH Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3 PE=2 SV=1

 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 187/381 (49%), Gaps = 94/381 (24%)

Query: 117 RETRSLKSSKNGEQSETSNSQEKT--LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHF 174
           +ET      ++ E +  ++ +EKT  LKKPDKILPCPRCNS DTKFCYYNNYNVNQPRHF
Sbjct: 72  KETSENSDDQHSEITTITSEEEKTTELKKPDKILPCPRCNSADTKFCYYNNYNVNQPRHF 131

Query: 175 CKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSG 234
           C+ CQRYWTAGG+MR VPVG+GRRKNK   +S+    + SE    + ++++         
Sbjct: 132 CRKCQRYWTAGGSMRIVPVGSGRRKNKGWVSSDQYLHITSEDTDNYNSSSTK-------- 183

Query: 235 NNGTILTF-GSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSITASSS 293
               IL+F  SDS + E                R     +E KI                
Sbjct: 184 ----ILSFESSDSLVTE----------------RPKHQSNEVKI---------------- 207

Query: 294 LEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTY 353
                   SQ+    N++G +P       PPWP+ +    P P FY    PV       Y
Sbjct: 208 ---NAEPVSQE--PNNFQGLLPPQASPVSPPWPYQY---PPNPSFY--HMPV-------Y 250

Query: 354 WGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPT-LGKHSRDGDIITPASTEKEEPSTGSR 412
           WGCA+P +                   TL T T LGK +RD    T   T KE     S+
Sbjct: 251 WGCAIPVW------------------STLDTSTCLGKRTRDE---TSHETVKE-----SK 284

Query: 413 NS-ERCVLVPKTLRI-DDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKSDHRNYIA 470
           N+ ER  L+ ++  I ++ S A  + +W  + +  EKT         G ++KS +  ++ 
Sbjct: 285 NAFERTSLLLESQSIKNETSMATNNHVWYPVPMTREKTQEFS-FFSNGAETKSSNNRFVP 343

Query: 471 ETSEVLQANPAALSRSLNFHE 491
           ET   LQANPAA++RS+NF E
Sbjct: 344 ETYLNLQANPAAMARSMNFRE 364

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|P68350|DOF15_ARATH Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 57/60 (95%)

Query: 142 KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 201
           K+PDKI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK+K
Sbjct: 56  KRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 115

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|O22967|CDF4_ARATH Cyclic dof factor 4 OS=Arabidopsis thaliana GN=CDF4 PE=2 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 67/93 (72%)

Query: 109 NPKTLSVDRETRSLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNV 168
           N +T+  + ET   +         +S+S     K+PDKI+ CPRC SM+TKFCY+NNYNV
Sbjct: 19  NTRTIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRCKSMETKFCYFNNYNV 78

Query: 169 NQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 201
           NQPRHFCK C RYWTAGG +RNVPVGAGRRK+K
Sbjct: 79  NQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSK 111

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 49/56 (87%)

Query: 148 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSS 203
           L CPRCNS++TKFCYYNNYN++QPRHFCKNC+RYWT GG +RNVPVG G RK K S
Sbjct: 51  LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRS 106

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 56/68 (82%)

Query: 144 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSS 203
           P+  L CPRC+S +TKFCYYNNY++ QPR+FCK+C+RYWT GGT+RN+PVG G RKNK S
Sbjct: 51  PELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRS 110

Query: 204 SASNYRQI 211
           ++S  R +
Sbjct: 111 TSSAARSL 118

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|P38564|MNB1A_MAIZE Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A PE=1 SV=2

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 55/70 (78%)

Query: 149 PCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNY 208
           PCPRC S DTKFCYYNNYN +QPRHFCK C+RYWT GGT+RNVPVG G RK  SSS+S+ 
Sbjct: 48  PCPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSSSSSSS 107

Query: 209 RQIMISEALR 218
             +  ++A R
Sbjct: 108 SYVAAADADR 117

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	494
359473345	477	PREDICTED: dof zinc finger protein DOF5.	0.929	0.962	0.557	1e-142
147780712	475	hypothetical protein VITISV_028596 [Viti	0.831	0.865	0.605	1e-140
224112251	399	f-box family protein [Populus trichocarp	0.787	0.974	0.643	1e-138
225452849	511	PREDICTED: dof zinc finger protein DOF5.	0.969	0.937	0.531	1e-132
224140999	506	predicted protein [Populus trichocarpa]	0.973	0.950	0.521	1e-131
255582115	497	zinc finger protein, putative [Ricinus c	0.961	0.955	0.516	1e-131
224080147	503	predicted protein [Populus trichocarpa]	0.965	0.948	0.513	1e-125
256387098	518	Dof3 protein [Jatropha curcas]	0.981	0.936	0.501	1e-125
344190178	471	DOF domain class transcription factor [C	0.925	0.970	0.502	1e-120
357474925	465	Dof zinc finger protein DOF1.10 [Medicag	0.929	0.987	0.476	1e-113

>gi|359473345|ref|XP_002269461.2| PREDICTED: dof zinc finger protein DOF5.2-like [Vitis vinifera]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/509 (55%), Positives = 343/509 (67%), Gaps = 50/509 (9%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALREE 60
           M + KD AIKLFG+ I L L             N H +             +  T+  ++
Sbjct: 1   MLDFKDPAIKLFGKTISLPL-------------NPHLSPTSPPPPPL----SSTTSFPDD 43

Query: 61  SSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDVTSKQ-----KDPITSSGNSDNPKTLSV 115
           +S   Q   Q Q+  + +E  G++      ED TS+Q     KDP  S G S+NP+T S 
Sbjct: 44  TSQGLQPPSQDQKPLEGQEFEGKE------EDGTSRQTSEELKDPTASPGVSENPETPSA 97

Query: 116 DRETRSLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC 175
           D+ET     SK+GEQSE S SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC
Sbjct: 98  DKET-----SKDGEQSEISGSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC 152

Query: 176 KNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGN 235
           KNCQRYWTAGGTMRNVPVGAGRRKNK+SSAS YR IM+SEAL+T +A+A+ G++ P  GN
Sbjct: 153 KNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRHIMVSEALQTARASAANGIHHPALGN 212

Query: 236 NGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVS--GTDNG---SSITA 290
           NGT+L FGSD PL ESVASV NL+DK+QNC++NGFH+SEQ+I  S  G +NG   SSIT 
Sbjct: 213 NGTVLNFGSDGPLCESVASVLNLADKTQNCMQNGFHKSEQRIPASCGGGENGDDHSSITL 272

Query: 291 SSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPW-----PHHWNTPMPPPGFYPSGFPV 345
           ++S EK GN    +   KN++   P VP FPG  W     P  W++ +PPP F P GFP+
Sbjct: 273 TNSAEK-GNIAGLEPVVKNFQAFSPHVPCFPGASWSYPWNPAQWSSKIPPPAFCPPGFPI 331

Query: 346 SFYPETTYWGCAVPGYCNMPCVPPNAS--LQSQFVPKTLSTPTLGKHSRDGDIITPASTE 403
           SFYP   YWGC VPG  N+PC+PP +S  + S       ++PTLGKH+RDG+++ PA+  
Sbjct: 332 SFYPAPAYWGCTVPGSWNIPCIPPTSSSPIHSALA-TNHNSPTLGKHARDGEVLNPANPG 390

Query: 404 KEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKS 463
           KE+      N ER V +PKTLRIDDP+EAAKSSIW TLGIKN+   S G  L K FQSK 
Sbjct: 391 KED-HQKENNPERGVWIPKTLRIDDPNEAAKSSIWTTLGIKND--GSNGGSLLKAFQSKG 447

Query: 464 DHRNYIAETSEVLQANPAALSRSLNFHER 492
           D +  IAE S VLQANPAALSRSLNFHER
Sbjct: 448 DEKKRIAEMSPVLQANPAALSRSLNFHER 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780712|emb|CAN60326.1| hypothetical protein VITISV_028596 [Vitis vinifera]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/446 (60%), Positives = 319/446 (71%), Gaps = 35/446 (7%)

Query: 72  QQQRDDKEHSG--------QQIIEDEHEDVTSKQ-----KDPITSSGNSDNPKTLSVDRE 118
           Q +   K+HSG         Q  E + ED TS+Q     KDP  S G S+NP+T S D+E
Sbjct: 39  QHKMAVKKHSGFLKHKPLEGQEFEGKEEDGTSRQTSEELKDPTASPGVSENPETPSADKE 98

Query: 119 TRSLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNC 178
           T     SK+GEQSE S SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNC
Sbjct: 99  T-----SKDGEQSEISGSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNC 153

Query: 179 QRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGT 238
           QRYWTAGGTMRNVPVGAGRRKNK+SSAS YR IM+SEAL+T +A+A+ G++ P  GNNGT
Sbjct: 154 QRYWTAGGTMRNVPVGAGRRKNKNSSASQYRHIMVSEALQTARASAANGIHHPALGNNGT 213

Query: 239 ILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVS--GTDNG---SSITASSS 293
           +L FGSD PL ESVASV NL+DK+QNC++NGFH+SEQ+I  S  G +NG   SSIT ++S
Sbjct: 214 VLNFGSDGPLCESVASVLNLADKTQNCMQNGFHKSEQRIPASCGGGENGDDHSSITLTNS 273

Query: 294 LEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPW-----PHHWNTPMPPPGFYPSGFPVSFY 348
            EK GN    +   KN++   P VP FPG  W     P  W++ +PPP F P GFP+SFY
Sbjct: 274 AEK-GNIAGLEPVVKNFQAFPPHVPCFPGASWSYPWNPAQWSSKIPPPAFCPPGFPISFY 332

Query: 349 PETTYWGCAVPGYCNMPCVPPNAS--LQSQFVPKTLSTPTLGKHSRDGDIITPASTEKEE 406
           P   YWGC VPG  N+PC+PP +S  + S       ++PTLGKH+RDG+++ PA+  KE+
Sbjct: 333 PAPAYWGCTVPGSWNIPCIPPTSSSPIHSALA-TNHNSPTLGKHARDGEVLNPANPGKED 391

Query: 407 PSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKSDHR 466
                 N ER V +PKTLRIDDP+EAAKSSIW TLGIKN+   S G  L K FQSK D +
Sbjct: 392 -HQKENNPERGVWIPKTLRIDDPNEAAKSSIWTTLGIKND--GSNGGSLLKAFQSKGDEK 448

Query: 467 NYIAETSEVLQANPAALSRSLNFHER 492
             IAE S VLQANPAALSRSLNFHER
Sbjct: 449 KRIAEMSPVLQANPAALSRSLNFHER 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112251|ref|XP_002316131.1| f-box family protein [Populus trichocarpa] gi|222865171|gb|EEF02302.1| f-box family protein [Populus trichocarpa]

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/421 (64%), Positives = 310/421 (73%), Gaps = 32/421 (7%)

Query: 79  EHSGQQIIEDEHEDVTSKQ-----KDPITSSGNSDNPKTLSVDRETRSLKSSKNGEQSET 133
           E SG++I  ++ EDVTS Q     KDP TSSG S+NPKT SV+RET SLKSSK+ EQ ET
Sbjct: 1   ESSGEEIANEKQEDVTSCQITEDSKDP-TSSGISENPKTPSVERETSSLKSSKDEEQRET 59

Query: 134 SNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPV 193
           S SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCK CQRYWTAGGTMRNVPV
Sbjct: 60  SISQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPV 119

Query: 194 GAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFGSDSPLHESVA 253
           GAGRRKNKSSSAS+YR +M+SEALRT Q +A  GV+ P  GNN T+L FGSDSPL +SVA
Sbjct: 120 GAGRRKNKSSSASHYRHLMVSEALRTVQVHAMNGVHNPSFGNNTTVLAFGSDSPLCDSVA 179

Query: 254 SVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSITASSSLEKGGNCTSQDIRTKNYRGS 313
           SV NLS+K+QN +RN +HR E +I V                    C    I  K+Y+  
Sbjct: 180 SVLNLSEKTQNSVRNEYHRPEHRIFVP-------------------CGGAGI-NKDYQSF 219

Query: 314 VPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNM-PCV-PPNA 371
            PQVP FPGPPWP+ WN+ +PPP FYP GFPVSFYP  TYWGC VP   N+ PCV PP+ 
Sbjct: 220 PPQVPCFPGPPWPYQWNSALPPPTFYPPGFPVSFYPAPTYWGCTVPSPWNVPPCVSPPST 279

Query: 372 SLQSQFVPKTLSTPTLGKHSRDGDIITPASTEKEEPSTGSRNSERCVLVPKTLRIDDPSE 431
           SL+   +  +  T TLGKHSRDG I+ PA    +EPS     S + VLVPKT RIDDPSE
Sbjct: 280 SLKHCTL-DSSPTSTLGKHSRDGSILHPAYL--KEPSREGTKSVKGVLVPKTSRIDDPSE 336

Query: 432 AAKSSIWATLGIKNEKTTSA-GECLFKGFQSKSDHRNYIAETSEVLQANPAALSRSLNFH 490
           AAKSSIWATLGI +EK+ S  G  LFKGFQSK++ +N +A  + VLQANPAALSRSLNFH
Sbjct: 337 AAKSSIWATLGIMSEKSNSINGGGLFKGFQSKNEDKNDMAGRTSVLQANPAALSRSLNFH 396

Query: 491 E 491
           E
Sbjct: 397 E 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452849|ref|XP_002283706.1| PREDICTED: dof zinc finger protein DOF5.2-like [Vitis vinifera]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/521 (53%), Positives = 344/521 (66%), Gaps = 42/521 (8%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDH-SASDDDHHQEACCDRNPETALRE 59
           M+E KD AIKLFG+ IPL       +       ND  S +      E   D+N  T    
Sbjct: 1   MAEAKDPAIKLFGKTIPLP------EVATAAAGNDSPSGATVGGGGEDWVDQNRAT---- 50

Query: 60  ESSNKQQQQQQQQQQRD-DKEHSGQQIIEDEHED-----VTSKQKDPITSSGNSDNPKTL 113
            SS ++   +  ++ R+ DK+ SG ++ +   ED      + +  DP  +SG ++NPKT 
Sbjct: 51  NSSPEEDCVRAGEEGREVDKDTSGGKVTDTRQEDGARSSTSEEFTDPDANSGVNENPKTP 110

Query: 114 SVDRETRSLKSSKNGE-QSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPR 172
           S D+ET +LK SKN E QSETS SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPR
Sbjct: 111 SADKETATLKCSKNEEEQSETSISQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPR 170

Query: 173 HFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPY 232
           HFCKNCQRYWTAGGTMRNVPVGAGRRKNK+S+ S+YR I +SEAL++ + +   G++ P 
Sbjct: 171 HFCKNCQRYWTAGGTMRNVPVGAGRRKNKNST-SHYRHITVSEALQSARTDVPNGIHHPA 229

Query: 233 SGNNGTILTFGSDSPLHESVASVPNLSDKS-QNCLRNGFHRSEQ---KILVSGTDNG--- 285
              NGT+LTFGSD+PL ES+ASV NL++K+ +NC  NGFH+ E+    +   G +NG   
Sbjct: 230 LKTNGTVLTFGSDTPLCESMASVLNLAEKTMRNCTPNGFHKPEKLRIPVPYGGGENGDDH 289

Query: 286 ---SSITASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPM--------- 333
              SS+TAS+S E+ G     D   +N     PQ+P FPG PWP+ WN+           
Sbjct: 290 LSKSSVTASNSKEEAGKTALPDQVMRNCHAFPPQIPCFPGAPWPYPWNSAQWSPPVPAIP 349

Query: 334 --PPPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHS 391
             PPP F PSGFP+ FYP   YWGC VPG  N+P VP  ++L         ++PTLGKHS
Sbjct: 350 PVPPPAFCPSGFPMPFYPAAAYWGCTVPGAWNIPWVPQPSALNHTAPSSGPNSPTLGKHS 409

Query: 392 RDGDIITPASTEKEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTS- 450
           RD +++  AS   EE      NSERC+ +PKTLRIDDP EAA+SSIWATLGIKN+K    
Sbjct: 410 RDENMLK-ASNFGEEELQKENNSERCLWIPKTLRIDDPGEAARSSIWATLGIKNDKADPI 468

Query: 451 AGECLFKGFQSKSDHRNYIAETSEVLQANPAALSRSLNFHE 491
           +G  LFK FQSK+D +N+IAETS VLQANPAALSRSLNFHE
Sbjct: 469 SGGRLFKSFQSKADEKNHIAETSPVLQANPAALSRSLNFHE 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140999|ref|XP_002323863.1| predicted protein [Populus trichocarpa] gi|222866865|gb|EEF03996.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/514 (52%), Positives = 351/514 (68%), Gaps = 33/514 (6%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRN-PETALRE 59
           MSE KD A KLFG+ I +  +         T  +D      D  + +C + +  ET + +
Sbjct: 1   MSEPKDQAFKLFGKTIQVPEISVTTAT---TTDDDDDDDSQDQDRPSCANSSLDETNITD 57

Query: 60  E-SSNKQQQQQQQQQQRDDKEHSGQQIIEDEHED---VTSKQKDPI-TSSGNSDNPKTLS 114
           + ++N ++   ++  + DDK+  G+  IE++ +    V +K+   +  +SG S+NPKT S
Sbjct: 58  DYNNNDKRDHGEEDTETDDKDSVGKTTIENQEDGASPVAAKESSNLDATSGTSENPKTPS 117

Query: 115 VDRETRSLKSSKNGE-QSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRH 173
           V++E+ +LK+S   E QS+TSNSQEKTLKKPDKI+PCPRCNSMDTKFCYYNNYNVNQPRH
Sbjct: 118 VEKESTALKTSNTEEEQSDTSNSQEKTLKKPDKIIPCPRCNSMDTKFCYYNNYNVNQPRH 177

Query: 174 FCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYS 233
           FCKNCQRYWTAGGTMRNVPVGAGRRKNK +SAS+YR I I EAL+  +A+   GV+ P  
Sbjct: 178 FCKNCQRYWTAGGTMRNVPVGAGRRKNK-NSASHYRHITIPEALQNGRADVPNGVHHPSL 236

Query: 234 GNNGTILTFGSDSPLHESVASVPNLSDKS-QNCLRNGFHRSEQ-KILVS------GTD-- 283
             NGT+LTFGSD+PLHES+ASV NL+DK+ +NC  NGFH+ E  ++ VS      G D  
Sbjct: 237 KTNGTVLTFGSDAPLHESMASVLNLADKTMRNCTMNGFHKPEALRVPVSYGGGENGDDHS 296

Query: 284 NGSSITASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWN-----TPMPPPGF 338
           NGSS+T S+S ++ G   S++   +NY+G  PQ+P FPG PWP+ WN     +P+PPP F
Sbjct: 297 NGSSVTVSNSSDEAGKSVSKESAMQNYQGYPPQIPCFPGVPWPYPWNSAQWSSPVPPPAF 356

Query: 339 YPSGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIIT 398
            PS FP+ FYP   YWGC VPG  N+P +P  +S +        ++PTLGKHSRD +++ 
Sbjct: 357 CPSSFPMPFYPAAAYWGCTVPGAWNVPWLPQPSSPKQTSSSSDPNSPTLGKHSRDENLLK 416

Query: 399 PASTEKEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTS-AGECLFK 457
           P+++++E       N+ERC+ +PKTLRIDDP EAAKSSIW TLGIKN+K  S  G  LFK
Sbjct: 417 PSNSKEE-----LVNTERCLWIPKTLRIDDPGEAAKSSIWTTLGIKNDKPGSFGGRGLFK 471

Query: 458 GFQSKSDHRNYIAETSEVLQANPAALSRSLNFHE 491
            F SK + +N  AETS VL ANPAALSRSL F E
Sbjct: 472 AFDSKVE-KNRAAETSPVLHANPAALSRSLKFQE 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582115|ref|XP_002531852.1| zinc finger protein, putative [Ricinus communis] gi|223528502|gb|EEF30530.1| zinc finger protein, putative [Ricinus communis]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/511 (51%), Positives = 335/511 (65%), Gaps = 36/511 (7%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALREE 60
           MSE KD AIKLFG+MIP   +           +    ++DDD     C DR    +    
Sbjct: 1   MSEPKDPAIKLFGKMIPFPEISTSTAA---AASATTCSADDD-----CQDRE-RPSCASS 51

Query: 61  SSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDVTSKQKDPITSSGNSDNPKTLSVDRETR 120
           S  +       +++  DK+  G+ + E + E+ + +  +P + SG ++NPKT SV+++  
Sbjct: 52  SLEEGDTTGDGEERESDKDAEGETLAESKQENGSEESSNPDSISGITENPKTSSVEKDDT 111

Query: 121 SLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR 180
           S  S    EQS+TSNSQEKT KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR
Sbjct: 112 SKTSKTEEEQSDTSNSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR 171

Query: 181 YWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTIL 240
           YWTAGGTMRNVPVGAGRRKNK +SAS+YR I +SEAL+  Q +   G++ P   +NGT L
Sbjct: 172 YWTAGGTMRNVPVGAGRRKNK-NSASHYRHITVSEALQNVQNDIPNGIHHPALKSNGTFL 230

Query: 241 TFGSDSPLHESVASVPNLSDKS-QNCLRNGFHRSEQ-KILVS--GTDN------GSSITA 290
           TFGSD+PLHESVAS  NL+DK+ QNC RNGFH+ E  +I VS  G ++      GS  TA
Sbjct: 231 TFGSDTPLHESVASALNLADKTVQNCTRNGFHKPEALRIPVSYAGVEHGDAHSKGSLATA 290

Query: 291 SSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWN-----TPMPPPGFYPSGFPV 345
           S+S ++      Q    +N +G  PQ+P +PG PWP+ WN     +P+PP  F P GFP+
Sbjct: 291 SNSKDEASKSGPQATVIQNCQGFPPQIPCYPGTPWPYPWNSAQWSSPVPPTAFCPPGFPM 350

Query: 346 SFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPAST--- 402
            FYP T YWGC VPG  NM  +P   S          ++PTLGKHSRD +++ P+++   
Sbjct: 351 PFYPTTAYWGCTVPGTWNMSWIPQPPSPNETASTSGPNSPTLGKHSRDDNMLKPSNSGET 410

Query: 403 -EKEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTS-AGECLFKGFQ 460
            EKE      +++ERC+ +PKTLRIDDP EAAKSSIW TLGIKN++  S  G  LFK F+
Sbjct: 411 PEKE------KSAERCLWIPKTLRIDDPGEAAKSSIWTTLGIKNDRPDSIGGRGLFKAFE 464

Query: 461 SKSDHRNYIAETSEVLQANPAALSRSLNFHE 491
           SK + +N+ AETS VLQANPAALSRSL F E
Sbjct: 465 SKGNEKNHAAETSSVLQANPAALSRSLKFRE 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080147|ref|XP_002306032.1| predicted protein [Populus trichocarpa] gi|222848996|gb|EEE86543.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 263/512 (51%), Positives = 342/512 (66%), Gaps = 35/512 (6%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALREE 60
           M E KD AIKLFG+ I ++ +         T  ND S    D  + +C      +    +
Sbjct: 1   MLEPKDPAIKLFGKTIQVTEISSTT-----TTDNDDS---QDQDRPSCAS---SSLYDAD 49

Query: 61  SSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDV----TSKQKDPITSSGNSDNPKTLSVD 116
           S N ++   ++  + DDK+   + + E + + V    T +  +P  +SG S+NPKT S++
Sbjct: 50  SDNNKRYHGEEDIEADDKDSVEKSLTEKQEDGVSPVATEEPSNPDATSGTSENPKTPSIE 109

Query: 117 RETRSLKSSKNGEQ-SETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC 175
           +E+  L++S+  E+ S+TSNS EKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC
Sbjct: 110 KESEGLQTSRTEEEDSDTSNSPEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC 169

Query: 176 KNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGN 235
           KNCQRYWTAGGTMRNVPVGAGRRKNK +SAS+YR I I EAL+  +A+   GVY P    
Sbjct: 170 KNCQRYWTAGGTMRNVPVGAGRRKNK-NSASHYRHITIPEALQNVRADVPNGVYHPSMKT 228

Query: 236 NGTILTFGSDSPLHESVASVPNLSDK-SQNCLRNGFHRSEQ-KILVS------GTD--NG 285
           NGT+LTFGSD+PLHES+ASV NL+DK ++NC RNG H+ +  +I VS      G D  NG
Sbjct: 229 NGTVLTFGSDTPLHESMASVLNLADKTTRNCTRNGSHKPDAVRIPVSYGSGENGDDHSNG 288

Query: 286 SSITASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPM-----PPPGFYP 340
           SS+T S+S+++ G   S++   +N +G  P++P FPG PWP+ WN+       PPP F P
Sbjct: 289 SSVTVSNSIDEAGKSMSKESAMQNCQGFPPEIPCFPGVPWPYPWNSAQWSSPLPPPAFCP 348

Query: 341 SGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPA 400
            GFP+ FYP   YWGC VPG  N+P +P  +S +        ++PTLGKHSRD +++  +
Sbjct: 349 PGFPMPFYPAAAYWGCTVPGAWNIPWLPQPSSPKQTSSSSGPNSPTLGKHSRDENMLKSS 408

Query: 401 STEKEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEK-TTSAGECLFKGF 459
           ++E+ E S    N+ERC+ +PKTLRI DP EAAKSSIW TLGIKN+K     G  LFK F
Sbjct: 409 NSEEGE-SAKENNTERCLWIPKTLRIVDPGEAAKSSIWTTLGIKNDKPDLIGGRGLFKAF 467

Query: 460 QSKSDHRNYIAETSEVLQANPAALSRSLNFHE 491
            SK + +N+ AETS VLQANPAALSRSL F E
Sbjct: 468 DSKVE-KNHEAETSPVLQANPAALSRSLKFQE 498

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256387098|gb|ACU80551.1| Dof3 protein [Jatropha curcas]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/522 (50%), Positives = 328/522 (62%), Gaps = 37/522 (7%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALR-- 58
           MSE KD AIKLFG+ IPL  +           A            ++     P  A    
Sbjct: 1   MSEPKDPAIKLFGKTIPLPEISHGGTGTSTASAATSGGGSISMDDDSQDQDRPTCASSSL 60

Query: 59  EESSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDVT---SKQKDPITSSGNSDNPKTLSV 115
           EES+ K    ++++    DK+  G+  +E + E+ T   + ++     +G SDNPKT SV
Sbjct: 61  EESNTKGGDGEERES---DKDAGGETPLESKQENGTPTVTAEESSNPDAGISDNPKTSSV 117

Query: 116 DRETRSLKSSKNGE-QSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHF 174
           +++  + ++SK  E QS+TSNSQEKT KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHF
Sbjct: 118 EKDNSTSQTSKTEEEQSDTSNSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHF 177

Query: 175 CKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSG 234
           CKNCQRYWTAGGTMRNVPVGAGRRKNK +S S+YR I +SEAL+    +   GV+ P   
Sbjct: 178 CKNCQRYWTAGGTMRNVPVGAGRRKNK-NSGSHYRHITVSEALQNVGTDIPNGVHHPALK 236

Query: 235 NNGTILTFGSDSPLHESVASVPNLSDKS-QNCLRNGFHRSEQ-KILVS------GTD--N 284
           +NGT+LTFGSD+PLHES+ASV NL++K+ QN  RNGFH+ E  +I VS      G D  N
Sbjct: 237 SNGTVLTFGSDTPLHESMASVLNLAEKTMQNSPRNGFHKPEALRIPVSYGGVGKGDDNSN 296

Query: 285 GSSITASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWN----------TPMP 334
           G S+ AS+S +      SQ+   +N +   PQVP FPG PWP+ WN          +P+ 
Sbjct: 297 GPSVMASNSKDDANKIGSQETMVRNGQSFQPQVPCFPGTPWPYPWNSAQWSSATCLSPVT 356

Query: 335 PPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVP----PNASLQSQFVPKTLSTPTLGKH 390
           PP F P GFP+ FYP   YWGC VPG  NMP +P    PN +          ++PTLGKH
Sbjct: 357 PPAFCPPGFPMPFYPTAAYWGCTVPGTWNMPWIPQPSSPNQTATQTATSSGPNSPTLGKH 416

Query: 391 SRDGDIITPASTEKEEPSTGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTT- 449
           SRD ++  P ++  EEP     N+ERC+ +PKTLRIDDP EAAKSSIW TLGI N+K   
Sbjct: 417 SRDENVQKPNNS-GEEPGK-ENNAERCIWIPKTLRIDDPGEAAKSSIWTTLGITNDKVDF 474

Query: 450 SAGECLFKGFQSKSDHRNYIAETSEVLQANPAALSRSLNFHE 491
             G  LFK F+SK D ++   E S +L ANPAALSRSL F E
Sbjct: 475 VGGRGLFKAFESKGDEKHRTTEASPLLNANPAALSRSLKFRE 516

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344190178|gb|AEM97871.1| DOF domain class transcription factor [Corylus heterophylla]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/503 (50%), Positives = 323/503 (64%), Gaps = 46/503 (9%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALREE 60
           M E KD AI+LFG+ I L                    SD D+   +  D +  T+ +E+
Sbjct: 1   MQENKDPAIRLFGKKISL-------------------PSDGDNPTVSGDDFSVNTSEKEK 41

Query: 61  SSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDVTSKQKDPITSSGNSDNPKTLSVDRETR 120
               +  +++++++  +K+        +E  D         T  G + NPKT S++ E  
Sbjct: 42  CGRVRGAEEEEEEEETEKDPPAAYPNTEEPTDSE-------TLPGANVNPKTPSIEEEKA 94

Query: 121 SLKSSKN-GEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQ 179
           +  ++K   EQS+T+NSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNV+QPRHFCK CQ
Sbjct: 95  NANTAKTEKEQSDTTNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVHQPRHFCKACQ 154

Query: 180 RYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTI 239
           RYWTAGGTMRNVPVGAGRRKNK +SAS+YRQI IS+AL+  + +AS G + P   +NG +
Sbjct: 155 RYWTAGGTMRNVPVGAGRRKNK-NSASHYRQITISDALQVARMDASNGTHYPTLKSNGRV 213

Query: 240 LTFGSDSPLHESVASVPNLSDKS-QNCLRNGFHR-SEQKILV--SGTDNG-------SSI 288
           L+FG D P+ +S+ASV +L+DK   N  +NGFH   EQ+I V   G +NG       S+I
Sbjct: 214 LSFGLDVPICDSMASVLSLADKKVLNGAQNGFHSFEEQRIPVPGKGRENGDDCSSGSSNI 273

Query: 289 TASSSLEKGGNCTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFY 348
           T S+S+E G +C  +    +N  G  PQ+P  PG PWP+ WN+ +PPP   P GFP+ FY
Sbjct: 274 TVSNSMEGGKHCPPEPF-AQNINGFPPQIPCLPGVPWPYQWNSAVPPPALCPPGFPMPFY 332

Query: 349 PETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPASTEKEEPS 408
           P T YW C VPG  N+P + P  S   +       +PTLGKH RDGD++ P + E+EEP 
Sbjct: 333 P-TAYWNCGVPGTWNVPWLSPQPSPNQKSPSSAPHSPTLGKHPRDGDMLKPDNLEREEP- 390

Query: 409 TGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKSDHRNY 468
              +    C+LVPKTLRIDDPSEAAKSSIWATLGIKNE     G  +FK FQSK D ++ 
Sbjct: 391 --PKQKNGCILVPKTLRIDDPSEAAKSSIWATLGIKNESICGGG--MFKAFQSKGDEKHR 446

Query: 469 IAETSEVLQANPAALSRSLNFHE 491
           IAETS VL ANPAALSRSLNFHE
Sbjct: 447 IAETSAVLLANPAALSRSLNFHE 469

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474925|ref|XP_003607748.1| Dof zinc finger protein DOF1.10 [Medicago truncatula] gi|355508803|gb|AES89945.1| Dof zinc finger protein DOF1.10 [Medicago truncatula]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/495 (47%), Positives = 309/495 (62%), Gaps = 36/495 (7%)

Query: 1   MSEVKDSAIKLFGQMIPLSLLKFQQQQGPETLANDHSASDDDHHQEACCDRNPETALREE 60
           MSEVKD AIKLFG+ IPL  L           AND S       +         +A++ E
Sbjct: 1   MSEVKDPAIKLFGRTIPLLPLIIP--------ANDSSFPSSSPPEFT-------SAIQHE 45

Query: 61  SSNKQQQQQQQQQQRDDKEHSGQQIIEDEHEDVTSKQKDPITSSGNSDNPKTLSVDRETR 120
           +    +++    Q  DD+  + Q+  ED     TS       S  + + PKT S + E  
Sbjct: 46  TEEPSRKELITAQ--DDE--ASQKTTEDLRALTTS-------SVVHENPPKTPSAETENS 94

Query: 121 SLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR 180
            LKSS N EQSETS S+EKTLKKPDKI+PCPRCNSMDTKFCY+NNYNVNQPRHFCK CQR
Sbjct: 95  LLKSSTNVEQSETSVSEEKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQR 154

Query: 181 YWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTIL 240
           YWTAGGTMRNVPVGAGRRKNK+ S S+YR ++I E  +    N+  G++    GN   +L
Sbjct: 155 YWTAGGTMRNVPVGAGRRKNKNLSTSHYRHLIIPEGAK---LNSPNGIHS--LGNGAAVL 209

Query: 241 TFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSITASSSLEKGGNC 300
           TF S+ PL  ++ASV N+++++QNC+ NGFH +      +    G S+TAS+S E+  + 
Sbjct: 210 TFDSNPPLCNTMASVLNIAERTQNCVSNGFHHASSYGGENDHSIGVSVTASNSSERKSHT 269

Query: 301 TSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETT---YWGCA 357
           ++  +  K   G  PQ+ + P P  P+ WN+ MPPP F P  +P++FY   T   YWGC 
Sbjct: 270 STNGLVDKGVEGFPPQLQHIPSPFLPYTWNSAMPPPTFCPPNYPLAFYTPVTPPAYWGCM 329

Query: 358 VPGYCNMPCVPPNASLQSQFVPKTLSTPTLGKHSRDGDIITPASTEKEEPSTGSRNSERC 417
            P + N+PC+ P ++  ++      S PTLGKHSRDG+IIT  ++ KE+P T   ++E  
Sbjct: 330 PPPW-NIPCISPGSASVNESDSAHSSVPTLGKHSRDGNIITSVNSPKEKPETEHNSTESS 388

Query: 418 VLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSA-GECLFKGFQSKSDHRNYIAETSEVL 476
           VL+PKTLR DDPSEAAKSS+W+ LGI N+K  S  G  +F GFQSK    N+   TS ++
Sbjct: 389 VLIPKTLRFDDPSEAAKSSLWSKLGINNDKANSLNGGGMFNGFQSKGKDMNHSVGTSPLM 448

Query: 477 QANPAALSRSLNFHE 491
            ANPAALSRS  FHE
Sbjct: 449 YANPAALSRSRTFHE 463

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	494
TAIR|locus:2079152	448	CDF3 "cycling DOF factor 3" [A	0.785	0.866	0.459	5.6e-88
TAIR|locus:2154079	298	CDF1 "AT5G62430" [Arabidopsis	0.291	0.483	0.519	2.3e-70
TAIR|locus:2007151	399	AT1G69570 [Arabidopsis thalian	0.291	0.360	0.497	2.6e-51
TAIR|locus:2164860	457	CDF2 "cycling DOF factor 2" [A	0.783	0.846	0.348	1.4e-48
TAIR|locus:2030006	175	AT1G29160 [Arabidopsis thalian	0.202	0.571	0.564	2.7e-29
TAIR|locus:2055506	170	AT2G34140 [Arabidopsis thalian	0.188	0.547	0.591	1.9e-28
TAIR|locus:2032153	325	AT1G28310 [Arabidopsis thalian	0.358	0.544	0.364	1.5e-25
TAIR|locus:2144030	257	TMO6 "TARGET OF MONOPTEROS 6"	0.346	0.665	0.372	2.6e-24
TAIR|locus:2019499	352	AT1G64620 [Arabidopsis thalian	0.172	0.241	0.558	3.4e-24
TAIR|locus:2053175	340	AT2G28810 [Arabidopsis thalian	0.342	0.497	0.371	3.4e-24

TAIR|locus:2079152 CDF3 "cycling DOF factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
 Identities = 205/446 (45%), Positives = 257/446 (57%)

Query:    76 DDKEHSGQQIIEDEHEDVTSKQKDPITSSGNSD---NPKTLSVDRE----TRSLKSSKNG 128
             DD+E       +   E VT +  D   ++ N +   N K  ++D+E    T  ++SS   
Sbjct:    31 DDEEDDWSGGDDKSPEKVTPELSDKNNNNCNDNSFNNSKPETLDKEEATSTDQIESSDTP 90

Query:   129 EQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTM 188
             E ++ +    KTLKKP KILPCPRC SM+TKFCYYNNYN+NQPRHFCK CQRYWTAGGTM
Sbjct:    91 EDNQQTTPDGKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTM 150

Query:   189 RNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFGSDSPL 248
             RNVPVGAGRRKNKSSS S+YR I ISEAL    A    G+       N  +L+FG ++  
Sbjct:   151 RNVPVGAGRRKNKSSS-SHYRHITISEALEA--ARLDPGLQA-----NTRVLSFGLEAQQ 202

Query:   249 -HESVASVPNLS----DKSQNCLRNGFHRSEQKILVSGTDNGSSITASSSLEKGGNCTSQ 303
              H +    P +      K  N  RN FH    + LV+  +NG   ++ SS+    N +  
Sbjct:   203 QHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVARVENGDDCSSGSSVTTSNNHSVD 262

Query:   304 DIRTKNYRGSVPQVP-----------Y--FPGPPWPHHWNTPMPPPGFYPS-GFPVSFYP 349
             + R ++  GSV +             Y   PG PWP+ WN  MPPPGFYP  G+P+ FYP
Sbjct:   263 ESRAQS--GSVVEAQMNNNNNNNMNGYACIPGVPWPYTWNPAMPPPGFYPPPGYPMPFYP 320

Query:   350 ETTYWGCAVPGYCNMPCVPPNASLQ--SQFVPKTLSTPTLGKHSRDGDIITPASTEKEEP 407
                YW         +P +PP+ S    SQ    T ++PTLGKH RD        + K++ 
Sbjct:   321 ---YW--------TIPMLPPHQSSSPISQKCSNT-NSPTLGKHPRD------EGSSKKDN 362

Query:   408 STGSRNSERCVLVPKTLRIDDPSEAAKSSIWATLGIKNEKTTSAGECLFKGFQSKSD-HR 466
              T  +    CVLVPKTLRIDDP+EAAKSSIW TLGIKNE    AG  +FKGF  K+  + 
Sbjct:   363 ETERKQKAGCVLVPKTLRIDDPNEAAKSSIWTTLGIKNEAMCKAGG-MFKGFDHKTKMYN 421

Query:   467 NYIAETSEVLQANPAALSRSLNFHER 492
             N  AE S VL ANPAALSRS NFHE+
Sbjct:   422 NDKAENSPVLSANPAALSRSHNFHEQ 447

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2154079 CDF1 "AT5G62430" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 2.3e-70, Sum P(4) = 2.3e-70
 Identities = 81/156 (51%), Positives = 102/156 (65%)

Query:   118 ETRSLKSSKNGEQSETSNSQ-EKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCK 176
             E    +  KN  ++ T  S+ +KTLKKP KILPCPRCNSM+TKFCYYNNYNVNQPRHFCK
Sbjct:    23 EVADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCK 82

Query:   177 NCQRYWTAGGTMRNVPVGAGRRKNKSSS-ASNYRQIMISEALRTFQANASGGVYKPYSGN 235
              CQRYWT+GGTMR+VP+GAGRRKNK++S  S+Y  + ISE      + + G   K  S N
Sbjct:    83 ACQRYWTSGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISETNGPVLSFSLGDDQK-VSSN 141

Query:   236 NGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFH 271
                   FG+     + VA + N  ++S N   NG +
Sbjct:   142 R-----FGNQ----KLVARIENNDERSNNNTSNGLN 168

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2007151 AT1G69570 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
 Identities = 86/173 (49%), Positives = 110/173 (63%)

Query:    91 EDVTSKQKDPITSSGNSDNPKTLSVDRETRSLKSSKNG--EQSE---------TSNSQEK 139
             E  ++K KDP   S  ++ PK +S   E  S +SSKN   +QSE         TS  +  
Sbjct:    67 EQESNKFKDPYILSDLNEPPKAVS---EISSPRSSKNNCDQQSEITTTTTTSTTSGEKST 123

Query:   140 TLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRK 199
              LKKPDK++PCPRC S +TKFCYYNNYNVNQPR+FC+NCQRYWTAGG+MRNVPVG+GRRK
Sbjct:   124 ALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSGRRK 183

Query:   200 NKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFGS-DSPLHES 251
             NK   +SN+   + SE                 + N+GTIL+FGS +S + E+
Sbjct:   184 NKGWPSSNHYLQVTSEDCD--------------NNNSGTILSFGSSESSVTET 222

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2164860 CDF2 "cycling DOF factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 146/419 (34%), Positives = 203/419 (48%)

Query:     6 DSAIKLFGQMIPLSLLKFQQQQGPET-LANXXXXXXXXXXQEACCDRNPETALREESSNK 64
             D AIKLFG+ IPL          PE  + +          +     R  ++   ++   +
Sbjct:     3 DPAIKLFGKTIPL----------PELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEE 52

Query:    65 XXXXXXXXXXRDDKEHSGQQIIEDEHEDVTSK-QKDPITSSGNSDNPKTLSVDRETRSLK 123
                        DD    G +   D+ E+  S+ Q++ + +  N     T  +  +T + K
Sbjct:    53 MGDSGLGREEGDDVGDGGGESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTETTK 112

Query:   124 SSKNGEQSE-TSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYW 182
             ++K  E+S  T+ SQE  LKKPDKILPCPRCNSM+TKFCYYNNYNVNQPRHFCK CQRYW
Sbjct:   113 AAKTNEESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYW 172

Query:   183 TAGGTMRNVPVGAGRRKNKSSSASNY-RQIMISEALRTFQANASGGVYKPYSGNNGTILT 241
             TAGGTMRNVPVGAGRRKNKS  AS+Y R + I+ A    Q  A   +  P   N   +LT
Sbjct:   173 TAGGTMRNVPVGAGRRKNKSP-ASHYNRHVSITSA-EAMQKVARTDLQHP---NGANLLT 227

Query:   242 FGSDSPLHESVASVPNLSDKSQNCLRNGFHRSEQ--KILVSGTDNGSSITASSSLEKGGN 299
             FGSDS L ES+AS  NL +KS    +       +  KI V            S L K   
Sbjct:   228 FGSDSVLCESMASGLNLVEKSLLKTQTVLQEPNEGLKITVPLNQTNEEAGTVSPLPKVP- 286

Query:   300 CTSQDIRTKNYRGSVPQVPYFPGPPWPHHWNTPMPPPGFYPSGFPVSFYPETTYWGCAVP 359
             C      T  Y  +       P  P P +W+ P   PG + S    ++ P+      + P
Sbjct:   287 CFPGPPPTWPYAWNGVSWTILPFYPPPAYWSCPGVSPGAWNS---FTWMPQPNSPSGSNP 343

Query:   360 GYCNMPCVPPNASLQSQFVPKTL--STPTLGKHSRDGD--IITPASTEKEEPSTGSRNS 414
                N P +  ++  ++   P T    T +LG+     +  +  P +   ++P   +++S
Sbjct:   344 ---NSPTLGKHSRDENAAEPGTAFDETESLGREKSKPERCLWVPKTLRIDDPEEAAKSS 399

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2030006 AT1G29160 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 57/101 (56%), Positives = 74/101 (73%)

Query:   102 TSSGNSDNPKTLSVDRETRSLKSSKNGEQSETSNSQEKTL-KKPDKILPCPRCNSMDTKF 160
             T + N++  +T+  + + +  +       +  S S + T  K+PDKI+PCPRC SM+TKF
Sbjct:    15 TITFNANITQTIKKEEQQQQQQPELQATTAVRSPSSDLTAEKRPDKIIPCPRCKSMETKF 74

Query:   161 CYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 201
             CY+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK+K
Sbjct:    75 CYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2055506 AT2G34140 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 55/93 (59%), Positives = 67/93 (72%)

Query:   109 NPKTLSVDRETRSLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNV 168
             N +T+  + ET   +         +S+S     K+PDKI+ CPRC SM+TKFCY+NNYNV
Sbjct:    19 NTRTIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRCKSMETKFCYFNNYNV 78

Query:   169 NQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNK 201
             NQPRHFCK C RYWTAGG +RNVPVGAGRRK+K
Sbjct:    79 NQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSK 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2032153 AT1G28310 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 71/195 (36%), Positives = 110/195 (56%)

Query:   100 PITSSGNSDNPKTLSVDRETRSLKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTK 159
             PI SS N+ NP  L+  +    + +S + +Q      Q++  ++P   L CPRC+S +TK
Sbjct:     2 PIISSPNT-NP--LASMQSKNMIVASSHQQQ------QQQQPQQPQPQLKCPRCDSSNTK 52

Query:   160 FCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRT 219
             FCYYNNY+++QPRHFCK C+RYWT GGT+RNVPVG   RKNK     +      +  + T
Sbjct:    53 FCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVKRPSTATTTTASTVST 112

Query:   220 FQANASGGVYK--PYSGNNGTILTFG-SD--SPLHESVASVPN-LSDKSQNCLRNGFHRS 273
               +++    ++   +S  N   L +G SD  S  + ++  +P+  SD S+ C  +G    
Sbjct:   113 TNSSSPNNPHQISHFSSMNHHPLFYGLSDHMSSCNNNLPMIPSRFSDSSKTCSSSGL--- 169

Query:   274 EQKILVSGTDNGSSI 288
             E + L SG  + S++
Sbjct:   170 ESEFLSSGFSSLSAL 184

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2144030 TMO6 "TARGET OF MONOPTEROS 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 69/185 (37%), Positives = 96/185 (51%)

Query:   117 RETRSLKSSKN-----GEQSETSNSQEKTLKKPDKI-LPCPRCNSMDTKFCYYNNYNVNQ 170
             RE   L  S N      +Q + S +   T  +P ++ L CPRC+S +TKFCYYNNY++ Q
Sbjct:    18 REAMGLSYSSNPTPLDNDQKKPSPATAVTRPQPPELALRCPRCDSTNTKFCYYNNYSLTQ 77

Query:   171 PRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANA-SGGVY 229
             PR+FCK+C+RYWT GGT+RN+PVG G RKNK S++S  R +  +    +      S   +
Sbjct:    78 PRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRSTSSAARSLRTTPEPASHDGKVFSAAGF 137

Query:   230 KPYSGNN--GTILTFGSDSPLHESVASV----PNLSDKSQNCLRNGFHRSEQKILVS-GT 282
               YS N      L F   +  H   +S       L    Q+ +   F  S+QK   +   
Sbjct:   138 NGYSNNEHIDLSLAFALLNKQHPGSSSQLGFHSELGSSHQSDMEGMFGTSQQKENATYAF 197

Query:   283 DNGSS 287
              NGSS
Sbjct:   198 GNGSS 202

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048364 "root development" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2019499 AT1G64620 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 3.4e-24, P = 3.4e-24
 Identities = 48/86 (55%), Positives = 65/86 (75%)

Query:   122 LKSSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRY 181
             LK   N   S  +  + K   + D+ L CPRCNS++TKFCYYNNY++ QPR+FCK+C+RY
Sbjct:    24 LKQQSN-PPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRY 82

Query:   182 WTAGGTMRNVPVGAGRRKNKSSSASN 207
             WTAGG++RN+PVG G RKNK SS+++
Sbjct:    83 WTAGGSLRNIPVGGGVRKNKRSSSNS 108

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2053175 AT2G28810 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 3.4e-24, P = 3.4e-24
 Identities = 71/191 (37%), Positives = 101/191 (52%)

Query:   124 SSKNGEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWT 183
             SS NG+ +E +    K  + P+  L CPRC+S +TKFCY+NNYN+ QPRHFCK C+RYWT
Sbjct:    71 SSLNGQAAERARLA-KNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWT 129

Query:   184 AGGTMRNVPVGAGRRKNKSSSASNYRQIMISEALRTFQANASGGVYKPYSGNNGTILTFG 243
              GG +RNVPVG G R+NK   + N +    S + +  Q+ +      P + +N  + T  
Sbjct:   130 RGGALRNVPVGGGCRRNKKGKSGNSKS---SSSSQNKQSTSMVNATSPTNTSNVQLQT-N 185

Query:   244 SDSPLHESVASVPNLSDKSQNCLRNGFHRSEQKILVSGTDNGSSITASSSLEK-----GG 298
             S  P       +P L + +Q     G   +   I  +G + G+  T+SS L       GG
Sbjct:   186 SQFPF------LPTLQNLTQ---LGGIGLNLAAI--NGNNGGNGNTSSSFLNDLGFFHGG 234

Query:   299 NCTSQDIRTKN 309
             N TS  +   N
Sbjct:   235 N-TSGPVMGNN 244

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZL5	CDF2_ARATH	No assigned EC number	0.4069	0.8643	0.9343	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_X000651 f-box family protein (424 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	494
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	2e-40

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  139 bits (351), Expect = 2e-40
 Identities = 51/62 (82%), Positives = 57/62 (91%)

Query: 143 KPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKS 202
           KPDK L CPRC+SM+TKFCYYNNYN+NQPR+FCKNC+RYWTAGG +RNVPVG GRRKNK 
Sbjct: 1   KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNKR 60

Query: 203 SS 204
           SS
Sbjct: 61  SS 62

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	494
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	88.42
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	86.95
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	85.13
COG3677	129	Transposase and inactivated derivatives [DNA repli	82.83
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	80.13

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=8.2e-36  Score=237.77  Aligned_cols=62  Identities=74%  Similarity=1.480  Sum_probs=60.1

Q ss_pred             CCCCccCCCCCcCCCCceeeecccCCCCCcccchhchhccccCCcccccccCcCcccCCCCC
Q 038013          143 KPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS  204 (494)
Q Consensus       143 ~p~~~~~CPRC~S~~TkfcyyNNy~~~QPRhfCk~C~RyWT~GG~lRnVPvGgG~RK~k~sS  204 (494)
                      +|++.++||||+|++|||||||||++.||||||++|+||||+||+|||||||||+||+|++|
T Consensus         1 ~~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~   62 (63)
T PF02701_consen    1 KPEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSS   62 (63)
T ss_pred             CCccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCC
Confidence            58899999999999999999999999999999999999999999999999999999999964

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=88.42  E-value=0.19  Score=46.56  Aligned_cols=34  Identities=26%  Similarity=0.661  Sum_probs=27.6

Q ss_pred             ccCCCCCcCCCCceeeeccc--CCCCCcccchhchhcc
Q 038013          147 ILPCPRCNSMDTKFCYYNNY--NVNQPRHFCKNCQRYW  182 (494)
Q Consensus       147 ~~~CPRC~S~~TkfcyyNNy--~~~QPRhfCk~C~RyW  182 (494)
                      ...||||.|.+|+.  .+.|  +.++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~--~s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTI--TSIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEe--ecCCCChhhHHHhhhhhhCCcH
Confidence            58999999999997  5666  4567889999998633

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=86.95  E-value=0.51  Score=35.49  Aligned_cols=31  Identities=35%  Similarity=0.779  Sum_probs=23.7

Q ss_pred             CCCCccCCCCCcCCCCceeeecccCCCCCcccchhchh
Q 038013          143 KPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQR  180 (494)
Q Consensus       143 ~p~~~~~CPRC~S~~TkfcyyNNy~~~QPRhfCk~C~R  180 (494)
                      =|+. ..||+|.+.  ++..+.+    +.++.|++|++
T Consensus        15 W~~g-~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   15 WPDG-FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             CCCC-CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            3444 669999998  6655555    78899999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=85.13  E-value=0.55  Score=34.63  Aligned_cols=30  Identities=33%  Similarity=0.731  Sum_probs=21.2

Q ss_pred             cCCCCCcCCCCceeeecccCC-CCCcccchhch
Q 038013          148 LPCPRCNSMDTKFCYYNNYNV-NQPRHFCKNCQ  179 (494)
Q Consensus       148 ~~CPRC~S~~TkfcyyNNy~~-~QPRhfCk~C~  179 (494)
                      +.||+|.+.+.=  |=|-.+. -..||+|++|+
T Consensus         6 v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    6 VHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            689999998721  2344443 35899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=82.83  E-value=0.85  Score=41.51  Aligned_cols=35  Identities=29%  Similarity=0.634  Sum_probs=27.8

Q ss_pred             cCCCCCcCCCCceeeecccCCCCCcccchhchhcccc
Q 038013          148 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTA  184 (494)
Q Consensus       148 ~~CPRC~S~~TkfcyyNNy~~~QPRhfCk~C~RyWT~  184 (494)
                      ..||+|.+.+  +-=++-+.....|+.|++|++=|+.
T Consensus        31 ~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          31 VNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             CcCCCCCccc--eeeECCccccccccccCCcCcceee
Confidence            4899999999  3335555666999999999998874

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=80.13  E-value=1.6  Score=32.43  Aligned_cols=37  Identities=24%  Similarity=0.806  Sum_probs=27.9

Q ss_pred             cCCCCCcCCCCceeeecccCCCCC---cccchhchhcccc
Q 038013          148 LPCPRCNSMDTKFCYYNNYNVNQP---RHFCKNCQRYWTA  184 (494)
Q Consensus       148 ~~CPRC~S~~TkfcyyNNy~~~QP---RhfCk~C~RyWT~  184 (494)
                      .+||+|...+.-|-..+-.....|   -|.|.+|...|..
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~~   40 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWRE   40 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeCC
Confidence            379999988877766655555555   4999999999963

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	494
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 71/469 (15%), Positives = 133/469 (28%), Gaps = 170/469 (36%)

Query: 69  QQQQQQRDDKEHSGQQIIED----EHED-----VTSKQKDPITSSGNSDNPKTLSVDRET 119
           + Q Q +D         +++    + +D     ++ ++ D I  S ++ +       R  
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS----GTLRLF 68

Query: 120 RSLKSSKNGEQSETSNSQEKTLKKPD------KILPCPRCNSMDTK-FCYYNN--YNVNQ 170
            +L S     Q E      + + + +       I    R  SM T+ +    +  YN NQ
Sbjct: 69  WTLLSK----QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 171 PRHFCK-NCQR---YW---TAGGTMR---NVPV----GAGRRKNKSSSASNYRQIMISEA 216
              F K N  R   Y     A   +R   NV +    G+G    K+         +  + 
Sbjct: 125 V--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTW--------VALDV 170

Query: 217 LRT--FQANASGGVYKPYSGNNGTILTFGSDSPLHESVASVPNLSDKSQNCLRNGFHRSE 274
             +   Q      ++  +       L   + +     +  +  L            ++ +
Sbjct: 171 CLSYKVQCKMDFKIF--W-------LNLKNCNSPETVLEMLQKL-----------LYQID 210

Query: 275 QKILVSGTDNGSSITASSSLEKGGNCTSQDIRTKNYRGS------VPQVPYFPGPPW-PH 327
                S +D+ S+I     +        + +++K Y         V              
Sbjct: 211 PN-WTSRSDHSSNI--KLRIHSIQAELRRLLKSKPYENCLLVLLNV----------QNAK 257

Query: 328 HWNTPMPPPGFYPSGFPVSFYPETTYWGCAVPGYCNMPCVPPNASLQSQFVPKTLSTPTL 387
            WN            F +          C                       K L T   
Sbjct: 258 AWNA-----------FNL---------SC-----------------------KILLT--- 271

Query: 388 GKHSRDG---DIITPASTEK---EEPSTGSRNSERCVLVPKTLRI---DDPSEAAK---- 434
              +R     D ++ A+T     +  S      E   L+ K L     D P E       
Sbjct: 272 ---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 435 --SSIWATLGIKNEKTTSAGECLFKGF-QSKSDHRNYIAETS-EVLQAN 479
             S I  ++  ++   T      +  +     D    I E+S  VL+  
Sbjct: 329 RLSIIAESI--RDGLAT------WDNWKHVNCDKLTTIIESSLNVLEPA 369

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	494
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	84.97
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	80.84

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.97  E-value=0.65  Score=35.85  Aligned_cols=51  Identities=20%  Similarity=0.451  Sum_probs=37.0

Q ss_pred             cccccccCCCCCccCCCCCcCCCCceeeecccCCCCCc---ccchhchhccccCCc
Q 038013          135 NSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPR---HFCKNCQRYWTAGGT  187 (494)
Q Consensus       135 ~~q~~~~~~p~~~~~CPRC~S~~TkfcyyNNy~~~QPR---hfCk~C~RyWT~GG~  187 (494)
                      ..++.+|++-  -..||+|...+.-|-+.+-....-|-   |.|.+|.-.|+.-++
T Consensus        13 ~~~DPtlp~t--~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          13 IGSDPTLPRS--DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             GGGCTTSCCC--CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             cccCCCCCcc--CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            3455667554  46999999888777666665544443   899999999998665

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.84  E-value=0.47  Score=34.51  Aligned_cols=39  Identities=15%  Similarity=0.659  Sum_probs=31.3

Q ss_pred             CCCccCCCCCcCCCCceeeecccCCCCCc---ccchhchhcc
Q 038013          144 PDKILPCPRCNSMDTKFCYYNNYNVNQPR---HFCKNCQRYW  182 (494)
Q Consensus       144 p~~~~~CPRC~S~~TkfcyyNNy~~~QPR---hfCk~C~RyW  182 (494)
                      +-..+.||+|.+.+..|--++......|-   +.|.+|+.-|
T Consensus         6 ~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           6 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             ECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             ccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            34557999999998887777777766665   8999999888