Citrus Sinensis ID: 038021

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-----
MATYFTSSSNQREGTPMIYLRESLPSSYPEAPVLPGNVMMYMNSGSYSDALAGSSQQQNNCIDIQSVEASHSTPQQQEMFSNLGGTRIVEHQFNAWRDSRNEMLVMHPMGGSTGMLHGGQNLQGQGLSLSLGTQIPPGIQMPSIPYRNPSAGFVSFLGSNSSISADNGRNGPSTDEQSRNADYLPAGTSGGNQDGKGDLSPYGMPSIARAIPSSKYLKAAQQLLDEVVNVRKALRQPDGEKSQSTHEQRMNNSKDGDGGSKDVTSNTQESPSNSPNELSHAERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQIRATRKSLGEQENSENSKGVGITRLRYVDQQLRQQRALQHLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEFADAEMDSNSSSENAAKATRGDLRASEDREEDLQQSGSSTAAERCSTGQLTESKSDRIPDIEMAGASFQNETSGEAETEYGLLKLREEQRPGVDDCNLFPDAMVPSSGGNDRFMAAAAAYHHMSELGRFGSGSGVSLTLGLQNCEGGSLPMAGATHQSFVAMRDDEMYHAAASSVGTDTVDYDCINNGNRQPRFSSSHLLHDFVA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccEEcccccccccccccccccccccccccccccccccccccccccccHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccHHHcc
matyftsssnqregtpmiylreslpssypeapvlpgnvmmymnsgsysdalagssqqqnncidiqsveashstpqQQEMFSNLGGTRIVEHQFNAWRDSRNEMlvmhpmggstgmlhggqnlqgqglslslgtqippgiqmpsipyrnpsagfvsflgsnssisadngrngpstdeqsrnadylpagtsggnqdgkgdlspygmpsiaraipssKYLKAAQQLLDEVVNVRKAlrqpdgeksqsTHEQRmnnskdgdggskdvtsntqespsnspnelSHAERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDViagcgaakpyTALALQTISRHFRCLRDAICGQIRATRKslgeqensenskgvgitRLRYVDQQLRQQRALQHLGMmqqhawrpqrglpessVSILRAWLFEhflhpypkdtdKIMLARQtgltrsqvsNWFINARVRLWKPMVEEMYKEEFadaemdsnsssenaakatrgdlrasedreedlqqsgsstaaercstgqltesksdripdiemagasfqnetsgeaeTEYGLLKLreeqrpgvddcnlfpdamvpssggndRFMAAAAAYHHMSelgrfgsgsgvsLTLGlqnceggslpmagathqSFVAMRDDEMYHAAAssvgtdtvdydcinngnrqprfssshllhdfva
matyftsssnqregtPMIYLRESLPSSYPEAPVLPGNVMMYMNSGSYSDALAGSSQQQNNCIDIQSVEASHSTPQQQEMFSNLGGTRIVEHQFNAWRDSRNEMLVMHPMGGSTGMLHGGQNLQGQGLSLSLGTQIPPGIQMPSIPYRNPSAGFVSFLGSNSSISADNGRNGPSTDEQSRNADYLpagtsggnqdgKGDLSPYGMPSIARAIPSSKYLKAAQQLLDEVVNVRKALrqpdgeksqstheqrmnnskdgdggskdvtsntqespsnspnelsHAERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQIRAtrkslgeqensenskgvgiTRLRYVDQQLRQQRALQHLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTgltrsqvsnwfinARVRLWKPMVEEMYKEEFAdaemdsnsssenaakatrgdlrasedreedlqqsgsstaaercstgqltesksdripDIEMagasfqnetsgeAETEYGLLKLREEQRPGVDDCNLFPDAMVPSSGGNDRFMAAAAAYHHMSELGRFGSGSGVSLTLGLQNCEGGSLPMAGATHQSFVAMRDDEMYHAAASSVGTDTVDYDCINNgnrqprfssshllhdfva
MATYFTSSSNQREGTPMIYLRESLPSSYPEAPVLPGNVMMYMNSGSYSDALAGSSQQQNNCIDIQSVEASHSTPQQQEMFSNLGGTRIVEHQFNAWRDSRNEMLVMHPMGGSTGMlhggqnlqgqglslslgtqIPPGIQMPSIPYRNPSAGFVSFLGSNSSISADNGRNGPSTDEQSRNADYLPAGTSGGNQDGKGDLSPYGMPSIARAIPSSKYLKAAQQLLDEVVNVRKALRQPDGEKSQSTHEQRMNNSKDGDGGSKDVTSNTQESPSNSPNELSHAERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQIRATRKSLGEQENSENSKGVGITRLRYVDqqlrqqralqHLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEFADAEMDSNSSSENAAKATRGDLRASEDREEDLQQSGSSTAAERCSTGQLTESKSDRIPDIEMAGASFQNETSGEAETEYGLLKLREEQRPGVDDCNLFPDAMVPSSGGNDRFMAAAAAYHHMSELGRFgsgsgvsltlglQNCEGGSLPMAGATHQSFVAMRDDEMYHAAASSVGTDTVDYDCINNGNRQPRFSSSHLLHDFVA
***********************************************************************************GGTRIVEHQFNAWRD****MLV********************************************************************************************************************QLLDEVV**************************************************************TKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQIRA****************VGITRLRYVDQQLRQQRALQHLGMMQQHAWR****L*ESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMY**************************************************************************************************CNLF************RFMAAAAAYHHMSELGRFGSGSGVSLTLGLQNCEGGSLPMAGATHQSFVAMRDDEMYHAAASSVGTDTVDYDCIN*******************
MATYF*************************************************************************************************************************************************************************************************************IPSSKYLKAAQQLLDEVVNVRK******************************************************QNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAI*************************************************************SVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKP********************************************************************************************************************************************GSGVSLTLGLQ********************************************************LLHDFVA
************EGTPMIYLRESLPSSYPEAPVLPGNVMMYMNSGSYSDALAGSSQQQNNCIDIQSV**********EMFSNLGGTRIVEHQFNAWRDSRNEMLVMHPMGGSTGMLHGGQNLQGQGLSLSLGTQIPPGIQMPSIPYRNPSAGFVSFLGSNSSISA*************RNADYLPAGTSGGNQDGKGDLSPYGMPSIARAIPSSKYLKAAQQLLDEVVNVRKAL**************************************************ELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQIRAT**************GVGITRLRYVDQQLRQQRALQHL***************ESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEFA***************************************************KSDRIPDIEMAGASFQ********TEYGLLKLREEQRPGVDDCNLFPDAMVPSSGGNDRFMAAAAAYHHMSELGRFGSGSGVSLTLGLQNCEGGSLPMAGATHQSFVAMRDDEMYHAAASSVGTDTVDYDCINNGNRQPRFSSSHLLHDFVA
******************Y***SLPSSYPEAPVLPGNVMMYMNSGSYSDALAGSSQQQNNCIDIQSVE***********************QFNAWRDSRNEMLVMHPMGGSTGMLHGGQNLQGQGLSLSLGTQIPPGIQMPSIPYRNPSAGFVSFLGSNS*I*********************************GDLSPYGMPSIARAIPSSKYLKAAQQLLDEVVNVR************************************************HAERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQIRATRKSLG************ITRLRYVDQQLRQQRALQHLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEFAD**********************************************************************************************LFPDAMVPSSGGNDRFMAAAAAYHHMSELGRFGSGSGVSLTLGLQNCEGGSLPMAGATHQSFVAMRDDEMYHAAASSVGTDTVDYDCIN*******************
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MATYFTSSSNQREGTPMIYLRESLPSSYPEAPVLPGNVMMYMNSGSYSDALAGSSQQQNNCIDIQSVEASHSTPQQQEMFSNLGGTRIVEHQFNAWRDSRNEMLVMHPMGGSTGMLHGGQNLQGQGLSLSLGTQIPPGIQMPSIPYRNPSAGFVSFLGSNSSISADNGRNGPSTDEQSRNADYLPAGTSGGNQDGKGDLSPYGMPSIARAIPSSKYLKAAQQLLDEVVNVRKALRQPDGEKSQSTHEQRMNNSKDGDGGSKDVTSNTQESPSNSPNELSHAExxxxxxxxxxxxxxxxxxxxxYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQIRATRKSLGEQENSENSKGVGITRLRYVDQQLRQQRALQHLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEFADAEMDSNSSSENAAKATRGDLRASEDREEDLQQSGSSTAAERCSTGQLTESKSDRIPDIEMAGASFQNETSGEAETEYGLLKLREEQRPGVDDCNLFPDAMVPSSGGNDRFMAAAAAYHHMSELGRFGSGSGVSLTLGLQNCEGGSLPMAGATHQSFVAMRDDEMYHAAASSVGTDTVDYDCINNGNRQPRFSSSHLLHDFVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query675 2.2.26 [Sep-21-2011]
O65685532 BEL1-like homeodomain pro yes no 0.768 0.975 0.453 1e-128
Q9SIW1482 BEL1-like homeodomain pro no no 0.543 0.761 0.518 1e-117
Q9FWS9524 BEL1-like homeodomain pro no no 0.543 0.700 0.498 2e-92
Q9FXG8538 BEL1-like homeodomain pro no no 0.518 0.650 0.491 4e-90
Q9SJ56680 BEL1-like homeodomain pro no no 0.577 0.573 0.436 5e-79
Q94KL5627 BEL1-like homeodomain pro no no 0.371 0.400 0.534 2e-71
Q9SW80739 BEL1-like homeodomain pro no no 0.370 0.338 0.515 2e-71
Q38897611 Homeobox protein BEL1 hom no no 0.389 0.430 0.480 2e-66
Q8S897431 BEL1-like homeodomain pro no no 0.364 0.570 0.453 9e-63
Q1PFD1290 BEL1-like homeodomain pro no no 0.374 0.872 0.441 2e-57
>sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1 Back     alignment and function desciption
 Score =  460 bits (1184), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 299/660 (45%), Positives = 373/660 (56%), Gaps = 141/660 (21%)

Query: 27  SYPEAPVLPGNVMMYMNSGSYSDALAGSSQQQNNCIDIQSVEASHSTPQQQEMFSNLGGT 86
           +YPE   +PG+ M+     SYS+  AG  ++     +  +V AS    Q+++  S  GG 
Sbjct: 3   NYPETQFIPGDSMIQNAIVSYSEESAGRERR----TEANNVSAS----QERQALSRFGGV 54

Query: 87  ---RIVEHQFNAWRD---SRNEMLVMHPMGGSTGMLHGGQNLQGQGLSLSLGTQIPPGIQ 140
              + +   F +WRD    RN   +M  M G+TG+L       GQGLSLSLG+QI PGI 
Sbjct: 55  PQMQNIGQDFGSWRDQASDRNGFQLMSAMAGATGILQ-----TGQGLSLSLGSQILPGIH 109

Query: 141 MPSIPYRNPSAGFVSFLGSNSSISADNGRNGPSTDEQSRNADYLPAGTSGGNQDGKGDLS 200
              I ++N +                            R  +Y      GGNQ+      
Sbjct: 110 --QISHQNMAP---------------------------RGNEYATQSFPGGNQN------ 134

Query: 201 PYGMPSIARAIPSSKYLKAAQQLLDEVVNVRKALRQPDGEKSQSTHEQRMNNSKDGDGGS 260
                 + R IP+SKYLKAAQQLLDE VNV+KAL+Q   E  ++    +  N        
Sbjct: 135 ----LDVVRTIPNSKYLKAAQQLLDEAVNVKKALKQFQAEGDKNNENPQEPNQ------- 183

Query: 261 KDVTSNTQESPSNSPNELSHAERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDV 320
                +TQ+S +N P ++S +ERQE+Q+KLTKLLSMLDEVDRRYKQYY QMQIVVSSFDV
Sbjct: 184 -----STQDSSTNPPADISQSERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDV 238

Query: 321 IAGCGAAKPYTALALQTISRHFRCLRDAICGQIRATRKSLGEQENSENSKGVGI-TRLRY 379
           IAG GAAKPYTALALQTISRHFR LRDAI GQI   RK LGEQ++  + K VGI +RL+Y
Sbjct: 239 IAGYGAAKPYTALALQTISRHFRSLRDAISGQILVLRKCLGEQQDGSDGKRVGIISRLKY 298

Query: 380 VDQQLRQQRALQHLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQ 439
           VDQ LRQQR     G MQ  AWRPQRGLPE+SV ILRAWLFEHFLHPYPKD+DKIMLARQ
Sbjct: 299 VDQHLRQQR-----GFMQPQAWRPQRGLPENSVLILRAWLFEHFLHPYPKDSDKIMLARQ 353

Query: 440 TGLTRSQVSNWFINARVRLWKPMVEEMYKEEFADAEMDSNSSSENAAKATR-GDLRA-SE 497
           TGL+R QVSNWFINARVRLWKPMVEE+YKEEF   E DSNSSSEN  K +  G + A  E
Sbjct: 354 TGLSRGQVSNWFINARVRLWKPMVEEIYKEEFT--ENDSNSSSENTPKMSEIGPVAADDE 411

Query: 498 DREEDLQQSGSSTAAERCSTGQLTESKSDRIPDIEMAGASFQNETSGEAETEYGLLKLRE 557
           DR  +  Q                ++K D        G  +  ET G             
Sbjct: 412 DRAREFSQD---------------QTKPDH-------GHGYGEETRG------------- 436

Query: 558 EQRPGVDDCNLFPDAMVPSSGGNDRFMAAAAAYHHMSELGRFGSGSGVSLTLGLQNCEG- 616
                          MV  S  + R   A    +H+++  R G G  VSLTLGLQN +G 
Sbjct: 437 ---------------MVQGSHMDGRRFMAVEPTYHVADTSRLGRGD-VSLTLGLQNSQGQ 480

Query: 617 -GSLPMAGATHQSFVAMRDDEMYHAAASSVGTDTVDYDCINNGNRQPRFSSSHLLHDFVA 675
              + M+   + +F  +   ++Y  A   +  D ++Y  +N G+RQ R +SS L+HDFVA
Sbjct: 481 DNVVAMSSEAYNNFSGV---DIYENA---IPGDEMEY--VNPGSRQNRINSSQLVHDFVA 532

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIW1|BLH7_ARATH BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FWS9|BLH3_ARATH BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana GN=BLH3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana GN=BLH10 PE=1 SV=1 Back     alignment and function description
>sp|Q9SJ56|BLH1_ARATH BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1 Back     alignment and function description
>sp|Q94KL5|BLH4_ARATH BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana GN=BLH4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SW80|BLH2_ARATH BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3 Back     alignment and function description
>sp|Q38897|BEL1_ARATH Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2 Back     alignment and function description
>sp|Q8S897|BLH5_ARATH BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana GN=BLH5 PE=2 SV=2 Back     alignment and function description
>sp|Q1PFD1|BLH11_ARATH BEL1-like homeodomain protein 11 OS=Arabidopsis thaliana GN=BLH11 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query675
255543785677 bel1 homeotic protein, putative [Ricinus 0.994 0.991 0.763 0.0
359475104691 PREDICTED: BEL1-like homeodomain protein 0.998 0.975 0.713 0.0
147773525691 hypothetical protein VITISV_015924 [Viti 0.998 0.975 0.709 0.0
449532899681 PREDICTED: BEL1-like homeodomain protein 0.986 0.977 0.659 0.0
449464694681 PREDICTED: BEL1-like homeodomain protein 0.986 0.977 0.659 0.0
297744767583 unnamed protein product [Vitis vinifera] 0.857 0.993 0.648 0.0
224103365487 predicted protein [Populus trichocarpa] 0.691 0.958 0.751 0.0
356509553759 PREDICTED: BEL1-like homeodomain protein 0.952 0.847 0.578 0.0
22652127645 BEL1-related homeotic protein 30 [Solanu 0.921 0.964 0.560 0.0
187940724645 BEL30 protein [Solanum etuberosum] 0.921 0.964 0.567 0.0
>gi|255543785|ref|XP_002512955.1| bel1 homeotic protein, putative [Ricinus communis] gi|223547966|gb|EEF49458.1| bel1 homeotic protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/681 (76%), Positives = 574/681 (84%), Gaps = 10/681 (1%)

Query: 1   MATYFTSSSNQREGTPMIYLRESLPSSYPEAPVLPGNVMMYMNSGSYSDALAGSSQQQNN 60
           MATY+ S++NQRE  PMIY+    P SY EAPVLPGNVMMYMN+GSYSD LAG+SQQQNN
Sbjct: 1   MATYYASTNNQREAVPMIYM----PGSYSEAPVLPGNVMMYMNAGSYSDTLAGNSQQQNN 56

Query: 61  CIDIQSVEASHSTPQQQEMFSNLGGTRIVEHQFNAWRDSRNEMLVMHPMGGSTGMLHGGQ 120
           CI+IQSVEAS STPQQQE+ SNL G+R+ +H  NAWRD RNEMLVMH M G + +L  GQ
Sbjct: 57  CIEIQSVEASDSTPQQQEILSNLSGSRMGQHDLNAWRDGRNEMLVMHSMAGPSSILLSGQ 116

Query: 121 NLQGQGLSLSLGTQIPPGIQMPSIPYRNPSAGFVSFLGSNSSISADNG-RNGPSTDEQSR 179
           NLQGQGLSLSLGTQIP GIQMPSI YRNPS G  SFL    SI  + G RN  S DE+ +
Sbjct: 117 NLQGQGLSLSLGTQIPSGIQMPSISYRNPSPGLASFLSPTPSIMGEGGGRNSSSRDEEPK 176

Query: 180 NADYLPAGTSGGNQD-GKGDLSPYGMPSIARAIPSSKYLKAAQQLLDEVVNVRKALRQPD 238
           +A+YLP G SGGNQD  KG LSPYG+ S+AR IPSSKYLKAAQQLLDEVV+VRKAL+QPD
Sbjct: 177 HAEYLPPGFSGGNQDSNKGALSPYGITSVARTIPSSKYLKAAQQLLDEVVSVRKALKQPD 236

Query: 239 GEKSQSTHEQRMNNSKDGDGGSKDVTSNTQESPSNSPNELSHAERQELQNKLTKLLSMLD 298
            EK+Q+  E  MN+S +GDG SKD +SN QES +NSPNELSH ERQELQNKLTKLLSMLD
Sbjct: 237 KEKNQNRDEHGMNSSNEGDGKSKDGSSNPQESTNNSPNELSHGERQELQNKLTKLLSMLD 296

Query: 299 EVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAICGQIRATRK 358
           EVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCL DAI GQIRATRK
Sbjct: 297 EVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLLDAISGQIRATRK 356

Query: 359 SLGEQENSENSKGVGITRLRYVDQQLRQQRALQHLGMMQQHAWRPQRGLPESSVSILRAW 418
           SLGEQE SEN KGVGITRLRYVDQQLRQQRALQ LGMMQQHAWRPQRGLPESSVSILRAW
Sbjct: 357 SLGEQETSENGKGVGITRLRYVDQQLRQQRALQQLGMMQQHAWRPQRGLPESSVSILRAW 416

Query: 419 LFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEFADAEMDS 478
           LFEHFLHPYPKD+DKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEE  D EMDS
Sbjct: 417 LFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGDVEMDS 476

Query: 479 NSSSENAAKATRGDLRASEDREEDLQQSGSSTAAERCSTGQLTESKSDRIPDIEMAGAS- 537
           NSSSENAA+ T+GD+  SEDREE++QQS SS A ERCS G L +SKS    D+EMAG++ 
Sbjct: 477 NSSSENAARVTKGDMGTSEDREEEMQQSASSVATERCSAGPLMDSKSVHASDVEMAGSTT 536

Query: 538 ---FQNETSGEAETEYGLLKLREEQRPGVDDCNLFPDAMVPSSGGNDRFMAAAAAYHHMS 594
              F N   GEA T+YGLL+LREEQRP +DDC LFPDA+V S GG +RFMAAAAA + MS
Sbjct: 537 RSNFHNIMRGEAITDYGLLRLREEQRPSMDDCGLFPDAIVHSDGGGNRFMAAAAAAYQMS 596

Query: 595 ELGRFGSGSGVSLTLGLQNCEGGSLPMAGATHQSFVAMRDDEMYHAAASSVGTDTVDYDC 654
           E+ RFGSGSGVSLTLGLQ+C+ GSLPM+  TH SFV MR D++Y AAASSVG +T D+DC
Sbjct: 597 EVARFGSGSGVSLTLGLQHCDDGSLPMSATTHHSFVPMRGDDIYGAAASSVGAETTDFDC 656

Query: 655 INNGNRQPRFSSSHLLHDFVA 675
           +N GNR+ RFSSSHLLHDFVA
Sbjct: 657 LNPGNREHRFSSSHLLHDFVA 677

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475104|ref|XP_003631586.1| PREDICTED: BEL1-like homeodomain protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147773525|emb|CAN62866.1| hypothetical protein VITISV_015924 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449532899|ref|XP_004173415.1| PREDICTED: BEL1-like homeodomain protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449464694|ref|XP_004150064.1| PREDICTED: BEL1-like homeodomain protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297744767|emb|CBI38029.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103365|ref|XP_002313027.1| predicted protein [Populus trichocarpa] gi|222849435|gb|EEE86982.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509553|ref|XP_003523512.1| PREDICTED: BEL1-like homeodomain protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|22652127|gb|AAN03627.1|AF406703_1 BEL1-related homeotic protein 30 [Solanum tuberosum] Back     alignment and taxonomy information
>gi|187940724|gb|ACD39463.1| BEL30 protein [Solanum etuberosum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query675
TAIR|locus:2139614532 BLH6 "AT4G34610" [Arabidopsis 0.493 0.625 0.581 1e-109
TAIR|locus:2042609482 BLH7 "AT2G16400" [Arabidopsis 0.357 0.5 0.687 1.4e-107
TAIR|locus:2013154538 BEL10 "AT1G19700" [Arabidopsis 0.668 0.838 0.406 4.5e-84
TAIR|locus:2018398524 BLH3 "AT1G75410" [Arabidopsis 0.514 0.662 0.486 9.3e-84
TAIR|locus:2039250680 BLH1 "AT2G35940" [Arabidopsis 0.445 0.442 0.514 2e-72
TAIR|locus:2049035627 BLH4 "BEL1-like homeodomain 4" 0.453 0.488 0.463 4.5e-66
TAIR|locus:2115000739 BLH2 "AT4G36870" [Arabidopsis 0.536 0.489 0.414 7.4e-66
TAIR|locus:2177856611 BEL1 "AT5G41410" [Arabidopsis 0.392 0.433 0.462 4.3e-61
TAIR|locus:2018457290 BLH11 "BEL1-like homeodomain 1 0.398 0.927 0.418 1.9e-53
TAIR|locus:2057856584 BLH8 "AT2G27990" [Arabidopsis 0.315 0.364 0.458 1.1e-51
TAIR|locus:2139614 BLH6 "AT4G34610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 927 (331.4 bits), Expect = 1.0e-109, Sum P(3) = 1.0e-109
 Identities = 208/358 (58%), Positives = 239/358 (66%)

Query:   151 AGFVSFLGSNSSISADNGRNGPSTDEQSRNADYLPAGTSGGNQDGKGDLSPYGMPSIARA 210
             AG    L +   +S   G        Q  + +  P G     Q   G         + R 
Sbjct:    84 AGATGILQTGQGLSLSLGSQILPGIHQISHQNMAPRGNEYATQSFPGGNQNL---DVVRT 140

Query:   211 IPSSKYLKAAQQLLDEVVNVRKALRQPDGEKSQSTHEQRMNNSKDGDGGSKDVTSNTQES 270
             IP+SKYLKAAQQLLDE VNV+KAL+Q   E  +       NN        ++   +TQ+S
Sbjct:   141 IPNSKYLKAAQQLLDEAVNVKKALKQFQAEGDK-------NNENP-----QEPNQSTQDS 188

Query:   271 PSNSPNELSHAERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPY 330
              +N P ++S +ERQE+Q+KLTKLLSMLDEVDRRYKQYY QMQIVVSSFDVIAG GAAKPY
Sbjct:   189 STNPPADISQSERQEMQSKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPY 248

Query:   331 TALALQTISRHFRCLRDAICGQIRATRKSLGEQENSENSKGVGI-TRLRYVDXXXXXXXX 389
             TALALQTISRHFR LRDAI GQI   RK LGEQ++  + K VGI +RL+YVD        
Sbjct:   249 TALALQTISRHFRSLRDAISGQILVLRKCLGEQQDGSDGKRVGIISRLKYVDQHLRQQR- 307

Query:   390 XXHLGMMQQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSN 449
                 G MQ  AWRPQRGLPE+SV ILRAWLFEHFLHPYPKD+DKIMLARQTGL+R QVSN
Sbjct:   308 ----GFMQPQAWRPQRGLPENSVLILRAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSN 363

Query:   450 WFINARVRLWKPMVEEMYKEEFADAEMDSNSSSENAAKATR-GDLRAS-EDREEDLQQ 505
             WFINARVRLWKPMVEE+YKEEF   E DSNSSSEN  K +  G + A  EDR  +  Q
Sbjct:   364 WFINARVRLWKPMVEEIYKEEFT--ENDSNSSSENTPKMSEIGPVAADDEDRAREFSQ 419
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0048513 "organ development" evidence=RCA
TAIR|locus:2042609 BLH7 "AT2G16400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013154 BEL10 "AT1G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018398 BLH3 "AT1G75410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039250 BLH1 "AT2G35940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049035 BLH4 "BEL1-like homeodomain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115000 BLH2 "AT4G36870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177856 BEL1 "AT5G41410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018457 BLH11 "BEL1-like homeodomain 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057856 BLH8 "AT2G27990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query675
pfam07526139 pfam07526, POX, Associated with HOX 1e-65
smart00574140 smart00574, POX, domain associated with HOX domain 3e-54
pfam0592040 pfam05920, Homeobox_KN, Homeobox KN domain 6e-21
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 1e-12
smart0038957 smart00389, HOX, Homeodomain 3e-09
pfam0004657 pfam00046, Homeobox, Homeobox domain 7e-05
>gnl|CDD|219452 pfam07526, POX, Associated with HOX Back     alignment and domain information 
 Score =  212 bits (541), Expect = 1e-65
 Identities = 79/143 (55%), Positives = 98/143 (68%), Gaps = 4/143 (2%)

Query: 209 RAIPSSKYLKAAQQLLDEVVNVRKALRQPDGEKSQSTHEQRMNNSKDGDGGSKDVTSNTQ 268
             +  SKYLK AQ+LL+E  +V K     D   + + +    + +  GDGG     S+  
Sbjct: 1   SVLRGSKYLKPAQELLEEFCSVGKNKALDDDSSNGAENGANSSGASSGDGGG----SSAG 56

Query: 269 ESPSNSPNELSHAERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAK 328
           +S  +S  ELS AERQELQ K  KLLSML+EVDRRY+QYY QMQ+V+SSF+ +AG GAAK
Sbjct: 57  DSSDSSSPELSTAERQELQRKKAKLLSMLEEVDRRYRQYYDQMQMVISSFEAVAGLGAAK 116

Query: 329 PYTALALQTISRHFRCLRDAICG 351
           PYTALALQ +SRHFRCLRDAI G
Sbjct: 117 PYTALALQAMSRHFRCLRDAISG 139

The function of this domain is unknown. It is often found in plant proteins associated with pfam00046. Length = 139
>gnl|CDD|214728 smart00574, POX, domain associated with HOX domains Back     alignment and domain information
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 675
smart00574140 POX domain associated with HOX domains. 100.0
PF07526140 POX: Associated with HOX; InterPro: IPR006563 This 100.0
KOG0773342 consensus Transcription factor MEIS1 and related H 100.0
KOG0774334 consensus Transcription factor PBX and related HOX 99.9
KOG0775304 consensus Transcription factor SIX and related HOX 99.64
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.58
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.32
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.27
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.26
KOG0487308 consensus Transcription factor Abd-B, contains HOX 98.68
KOG0493342 consensus Transcription factor Engrailed, contains 98.6
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 98.57
KOG0489261 consensus Transcription factor zerknullt and relat 98.51
KOG0843197 consensus Transcription factor EMX1 and related HO 98.51
KOG0483198 consensus Transcription factor HEX, contains HOX a 98.46
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 98.45
KOG0850245 consensus Transcription factor DLX and related pro 98.36
KOG0488309 consensus Transcription factor BarH and related HO 98.32
COG5576156 Homeodomain-containing transcription factor [Trans 98.24
KOG0485268 consensus Transcription factor NKX-5.1/HMX1, conta 98.2
KOG0492246 consensus Transcription factor MSH, contains HOX d 98.11
KOG3802398 consensus Transcription factor OCT-1, contains POU 98.06
KOG2251228 consensus Homeobox transcription factor [Transcrip 98.03
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 98.02
KOG4577383 consensus Transcription factor LIM3, contains LIM 97.99
KOG0848317 consensus Transcription factor Caudal, contains HO 97.97
KOG0494332 consensus Transcription factor CHX10 and related H 97.93
KOG0486351 consensus Transcription factor PTX1, contains HOX 97.92
KOG0491194 consensus Transcription factor BSH, contains HOX d 97.8
KOG2252558 consensus CCAAT displacement protein and related h 97.67
KOG0844408 consensus Transcription factor EVX1, contains HOX 97.55
PF03792191 PBC: PBC domain; InterPro: IPR005542 Pbx proteins 97.51
KOG0773342 consensus Transcription factor MEIS1 and related H 97.3
KOG0849354 consensus Transcription factor PRD and related pro 97.04
KOG0490235 consensus Transcription factor, contains HOX domai 96.97
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 96.87
KOG0847288 consensus Transcription factor, contains HOX domai 96.85
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 96.21
KOG0490235 consensus Transcription factor, contains HOX domai 93.0
PF0379152 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN 92.47
KOG1146 1406 consensus Homeobox protein [General function predi 85.95
>smart00574 POX domain associated with HOX domains Back     alignment and domain information 
Probab=100.00  E-value=9.1e-42  Score=319.11  Aligned_cols=139  Identities=56%  Similarity=0.767  Sum_probs=110.7

Q ss_pred             CcccccccCCcchhHHHHHHHHHhhhhccccCCCCcccchhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 038021          205 PSIARAIPSSKYLKAAQQLLDEVVNVRKALRQPDGEKSQSTHEQRMNNSKDGDGGSKDVTSNTQESPSNSPNELSHAERQ  284 (675)
Q Consensus       205 ~~~~~~l~~Sryl~~aQeLL~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~e~~  284 (675)
                      +||+++|++|||||||||||||||+|++.++.....+...... . ....+.++...+     ..+..+..++|+++||+
T Consensus         1 ~g~~~~l~~SkyLk~aQeLLdEf~sv~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~-----g~s~~~~~~~ls~~~r~   73 (140)
T smart00574        1 TGGVFILRNSKYLKAAQELLDEFCNVGRGSSKKKKQSGNDSPV-S-TSSNEGGGENLS-----GGSSSSEVPPLSTAERQ   73 (140)
T ss_pred             CchhhhccCccccccHHHHHHHHhcccHHhhcccccccccccc-c-ccccCCCcCCCC-----CCCCCCCCCCCchhHHH
Confidence            4789999999999999999999999998877654332110000 0 011111111111     11223456899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCchhhHHHHHHHHHHhhhhhhHHHH
Q 038021          285 ELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAIC  350 (675)
Q Consensus       285 e~q~k~~kLl~ml~Evd~ry~qy~~qmq~vvssfe~vag~gaa~pyt~lALq~IsrhFr~LrdaI~  350 (675)
                      |+|+||+||+.||+|||+||+|||+|||+||++||+|+|.|+|+|||+||||+||||||||||+|+
T Consensus        74 e~q~kk~kLl~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~SrhFr~LrdaI~  139 (140)
T smart00574       74 ELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKDAIA  139 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999996

>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] Back     alignment and domain information
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2 Back     alignment and domain information
>KOG1146 consensus Homeobox protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query675
3k2a_A67 Crystal Structure Of The Homeobox Domain Of Human H 1e-12
1x2n_A73 Solution Structure Of The Homeobox Domain Of Human 1e-11
2lk2_A89 Solution Nmr Structure Of Homeobox Domain (171-248) 1e-10
2dmn_A83 The Solution Structure Of The Homeobox Domain Of Hu 3e-10
1b8i_B63 Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX 5e-07
1lfu_P82 Nmr Solution Stucture Of The Extended Pbx Homeodoma 5e-07
1puf_B73 Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bo 6e-07
1b72_B87 Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Le 7e-07
1du6_A64 Solution Structure Of The Truncated Pbx Homeodomain 7e-06
4egc_A559 Crystal Structure Of Mbp-fused Human Six1 Bound To 8e-05
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox Protein Meis2 Length = 67 Back     alignment and structure 
Iteration: 1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 407 LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEE 465
            P+ + +I RAWLF+H  HPYP +  K  LA+ TGLT  QV+NWFINAR R+ +P +++
Sbjct: 5   FPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPXIDQ 63
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Pknox1 Length = 73 Back     alignment and structure
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of Human Homeobox Protein Tgif1, Northeast Structural Genomics Consortium Target Hr4411b Length = 89 Back     alignment and structure
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Tgif2lx Length = 83 Back     alignment and structure
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX Length = 63 Back     alignment and structure
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain Bound To Dna Length = 82 Back     alignment and structure
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To Dna Length = 73 Back     alignment and structure
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Length = 87 Back     alignment and structure
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain Length = 64 Back     alignment and structure
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human Eya2 Eya Domain Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query675
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 6e-39
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 4e-38
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 8e-38
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 1e-35
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 2e-34
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 2e-33
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 1e-31
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 1e-27
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 2e-27
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 2e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 6e-08
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 1e-06
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 2e-06
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 1e-05
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 2e-05
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 7e-05
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 1e-04
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 2e-04
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 3e-04
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 6e-04
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 8e-04
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
 Score =  137 bits (347), Expect = 6e-39
 Identities = 27/86 (31%), Positives = 46/86 (53%)

Query: 400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLW 459
           A R +R   + +  IL  + + H  +PYP +  K  LA++ G+T SQVSNWF N R+R  
Sbjct: 1   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60

Query: 460 KPMVEEMYKEEFADAEMDSNSSSENA 485
           K + +   +     A+    +++ +A
Sbjct: 61  KNIGKFQEEANIYAAKTAVTATNVSA 86
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query675
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.7
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.7
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.67
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.66
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.61
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.59
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.59
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.58
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.56
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.55
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.43
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.39
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 99.36
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 99.34
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 99.33
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.33
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 99.33
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 99.33
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 99.32
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 99.32
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 99.32
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.32
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.31
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 99.31
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 99.3
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 99.3
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 99.3
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 99.29
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 99.29
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 99.29
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 99.28
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 99.28
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 99.27
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 99.26
3a02_A60 Homeobox protein aristaless; homeodomain, developm 99.26
1wh5_A80 ZF-HD homeobox family protein; structural genomics 99.26
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 99.25
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 99.25
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 99.25
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 99.25
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 99.24
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 99.23
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 99.23
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 99.23
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 99.22
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 99.21
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 99.21
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 99.21
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 99.21
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 99.2
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 99.2
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 99.2
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 99.2
1uhs_A72 HOP, homeodomain only protein; structural genomics 99.19
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 99.19
3a01_A93 Homeodomain-containing protein; homeodomain, prote 99.18
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.18
3d1n_I151 POU domain, class 6, transcription factor 1; prote 99.17
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 99.15
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 99.13
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 99.12
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 99.11
2e19_A64 Transcription factor 8; homeobox domain, structura 99.09
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 99.06
1e3o_C160 Octamer-binding transcription factor 1; transcript 99.04
2xsd_C164 POU domain, class 3, transcription factor 1; trans 99.03
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 99.02
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 99.01
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 99.0
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 98.97
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 98.94
1lfb_A99 Liver transcription factor (LFB1); transcription r 98.93
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 98.89
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 98.78
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.77
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 98.7
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 98.63
2nzz_A37 Penetratin conjugated GAS (374-394) peptide; confo 95.16
2ys9_A70 Homeobox and leucine zipper protein homez; homeodo 93.31
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
Probab=99.70  E-value=1.2e-17  Score=143.19  Aligned_cols=64  Identities=42%  Similarity=0.800  Sum_probs=60.6

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 038021          400 AWRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLWKPMV  463 (675)
Q Consensus       400 ~~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~RlkKp~i  463 (675)
                      .+|+|+.|++.++.+|+.||.+|..||||+.++|..||.+|||+..||.+||+|+|+|.|++++
T Consensus         7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~   70 (83)
T 2dmn_A            7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML   70 (83)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence            5577778999999999999999999999999999999999999999999999999999998866
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A Back     alignment and structure
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 675
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 3e-19
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 3e-18
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 8e-16
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 8e-08
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 4e-07
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 1e-06
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 2e-06
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 2e-05
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 3e-05
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 3e-05
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 6e-05
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 9e-05
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 1e-04
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 2e-04
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 2e-04
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 3e-04
d2ecba176 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote 6e-04
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 9e-04
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 0.001
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 0.001
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 0.001
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 0.001
d1au7a158 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra 0.002
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 0.002
d1zq3p167 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl 0.003
d1e3oc157 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( 0.004
d1uhsa_72 a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse 0.004
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (197), Expect = 3e-19
 Identities = 29/58 (50%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 402 RPQRG-LPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRL 458
           + +RG LP+ + +++R+WLF+H  HPYP + +K  +A QT LT  QV+NWFINAR R+
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 60
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query675
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.72
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.71
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.66
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.44
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.39
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.39
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.38
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.38
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.37
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.37
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.36
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.36
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.36
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.35
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.35
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.33
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.33
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.33
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.32
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.32
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.31
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.3
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.28
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.27
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.25
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 99.24
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.22
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.22
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.2
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.17
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 99.16
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.06
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.2e-18  Score=138.38  Aligned_cols=59  Identities=46%  Similarity=0.835  Sum_probs=55.8

Q ss_pred             CCCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 038021          401 WRPQRGLPESSVSILRAWLFEHFLHPYPKDTDKIMLARQTGLTRSQVSNWFINARVRLW  459 (675)
Q Consensus       401 ~RkRR~LPk~a~~iLr~Wf~eH~~nPYPS~~eK~~LA~~TGLS~~QVsNWFiNaR~Rlk  459 (675)
                      +|+|..||++++.+|+.||.+|..||||+.+||.+||++|||+..||.|||+|+|+|+.
T Consensus         3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~l   61 (62)
T d1x2na1           3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL   61 (62)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhc
Confidence            45667799999999999999999999999999999999999999999999999999975
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure