Citrus Sinensis ID: 038285

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
QKSSTAQKRKAGRKKFQETRHPVYKGVRRRNGKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCMESNSENVQDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVEFTLWSD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEccccccEEEEEEEccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEcccccHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcccHHHHHHHHHccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
QKSSTAQKRKAGRKkfqetrhpvykgvrrrngkwvcelrepnkksriwlgtfaspdkAARAYDAAALALRgnsaslnfpEAAGALRRAKSDDVRDIQCAAMEAAeklsspssskpcmesnsenvqdsrrefvdeeevfnmpgiIDGMAEAliltppamksgfkwddldeTVEFTLWSD
Flexible Loop (DISEMBL)
qksstaqkrkagrkkfqetrhpvykgvrrrngkwvcelrepnkksriwlgtFASPDKAARAYDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAaeklsspssskpcmesnsenvqdsrrEFVDEEEVFNMPGIIDGMAEALILTPpamksgfkwddLDETVEFTLWSD
Low Complexity Region (SEG)
QKSSTAQKRKAGRKKFQETRHPVYKGVRRRNGKWVCELREPNKKSRIWLGTFASPDKaaraydaaalalrGNSASLNFPEAAGALRRAKSDDVRDIQCAAMeaaeklsspssskpcmesnseNVQDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVEFTLWSD
Disordered region (IsUnstruct)
**********************VYKGVRRRNGKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALR*****************************************************************EVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVEFTLW**
Disordered Region (DISOPRED)
************************KGVRRRNGKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPE***************************************************VDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVEFTLWS*
Disordered Region (DISEMBL)
****************QETRHPVYKGVRRRNGKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEAAG**********RDIQCAAME**************************REFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVEFTLWSD
Disordered Region (DISPRO)
*************KKFQETRHPVYKGVRRRNGKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKL*********************REFVDEEEVFNMPGIIDGMAEALILTPPAMK*******************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QKSSTAQKRKAGRKKFQETRHPVYKGVRRRNGKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCMESNSENVQDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVEFTLWSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q9FJ93	224	Dehydration-responsive el	yes	no	0.971	0.772	0.450	6e-37
Q8S9Z5	219	Dehydration-responsive el	yes	no	0.848	0.689	0.490	4e-36
A2WZI4	219	Dehydration-responsive el	N/A	no	0.848	0.689	0.490	4e-36
Q9SYS6	216	Dehydration-responsive el	no	no	0.977	0.805	0.438	1e-35
P93835	213	Dehydration-responsive el	no	no	0.977	0.816	0.454	2e-34
Q9M0L0	216	Dehydration-responsive el	no	no	0.983	0.810	0.435	5e-33
Q8H273	219	Dehydration-responsive el	no	no	0.971	0.789	0.417	6e-29
A2XWL6	219	Dehydration-responsive el	N/A	no	0.971	0.789	0.417	6e-29
Q9SGJ6	181	Dehydration-responsive el	no	no	0.910	0.895	0.422	2e-27
Q9LN86	209	Dehydration-responsive el	no	no	0.612	0.521	0.547	5e-27

>sp|Q9FJ93|DRE1D_ARATH Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1

 Score =  153 bits (386), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 86/191 (45%), Positives = 124/191 (64%), Gaps = 18/191 (9%)

Query: 3   SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKAARA 61
           +S+  K++AGRKKF+ETRHP+Y+GVR+RN GKWVCE+REPNKKSRIWLGTF + + AARA
Sbjct: 33  ASSCPKKRAGRKKFRETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARA 92

Query: 62  YDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPC----- 116
           +D AALALRG SA LNF ++A  LR  ++   ++IQ AA EAA    + ++++       
Sbjct: 93  HDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAAMAFQNETTTEGSKTAAE 152

Query: 117 -MESNSENVQDSRRE---------FVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDD 166
             E+  E V++  R          ++D+E +  MP   + MAE ++L PP +  G+  +D
Sbjct: 153 AEEAAGEGVREGERRAEEQNGGVFYMDDEALLGMPNFFENMAEGMLLPPPEV--GWNHND 210

Query: 167 LDETVEFTLWS 177
            D   + +LWS
Sbjct: 211 FDGVGDVSLWS 221

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S9Z5|DRE1F_ORYSJ Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1

 Score =  150 bits (379), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 105/163 (64%), Gaps = 12/163 (7%)

Query: 8   KRKAGRKKFQETRHPVYKGVRRRNG--KWVCELREPNKKSRIWLGTFASPDKAARAYDAA 65
           KR+AGRKKF+ETRHPVY+GVR R G  +WVCE+REP  ++RIWLGT+ +P+ AARA+D A
Sbjct: 31  KRRAGRKKFRETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVA 90

Query: 66  ALALRG-NSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCMESNSENV 124
           A+ALRG   A LNFP++   L RA++    DI+ AA +AAE    P       E   E  
Sbjct: 91  AIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAELYRRPPPPLALPEDPQEGT 150

Query: 125 QDSRRE---------FVDEEEVFNMPGIIDGMAEALILTPPAM 158
                          FVDE+ +F+MPG+ID MA  ++LTPPA+
Sbjct: 151 SGGGATATSGRPAAVFVDEDAIFDMPGLIDDMARGMMLTPPAI 193

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WZI4|DRE1F_ORYSI Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1

 Score =  150 bits (379), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 105/163 (64%), Gaps = 12/163 (7%)

Query: 8   KRKAGRKKFQETRHPVYKGVRRRNG--KWVCELREPNKKSRIWLGTFASPDKAARAYDAA 65
           KR+AGRKKF+ETRHPVY+GVR R G  +WVCE+REP  ++RIWLGT+ +P+ AARA+D A
Sbjct: 31  KRRAGRKKFRETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVA 90

Query: 66  ALALRG-NSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCMESNSENV 124
           A+ALRG   A LNFP++   L RA++    DI+ AA +AAE    P       E   E  
Sbjct: 91  AIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAELYRRPPPPLALPEDPQEGT 150

Query: 125 QDSRRE---------FVDEEEVFNMPGIIDGMAEALILTPPAM 158
                          FVDE+ +F+MPG+ID MA  ++LTPPA+
Sbjct: 151 SGGGATATSGRPAAVFVDEDAIFDMPGLIDDMARGMMLTPPAI 193

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SYS6|DRE1C_ARATH Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 122/187 (65%), Gaps = 13/187 (6%)

Query: 3   SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKAARA 61
           +++  K+ AGRKKF+ETRHP+Y+GVR+RN GKWVCELREPNKK+RIWLGTF + + AARA
Sbjct: 30  ATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARA 89

Query: 62  YDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAE-------KLSSPSSSK 114
           +D AA+ALRG SA LNF ++A  LR  +S   ++IQ AA EAA         +++ +   
Sbjct: 90  HDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAALNFQDEMCHMTTDAHGL 149

Query: 115 PCMESNSENV----QDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDET 170
              E+  E +    Q     ++DEE +  M  ++D MAE ++L  P+++  + + D++  
Sbjct: 150 DMEETLVEAIYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSPSVQWNYNF-DVEGD 208

Query: 171 VEFTLWS 177
            + +LWS
Sbjct: 209 DDVSLWS 215

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|P93835|DRE1B_ARATH Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 13/187 (6%)

Query: 3   SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKAARA 61
           +++  K+ AGRKKF+ETRHP+Y+GVR+RN GKWV E+REPNKK+RIWLGTF + + AARA
Sbjct: 27  ATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARA 86

Query: 62  YDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCM---- 117
           +D AALALRG SA LNF ++A  LR  +S   +DIQ AA EAA      +          
Sbjct: 87  HDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTTTNHGL 146

Query: 118 ---ESNSENV----QDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDET 170
              E+  E +    Q     ++DEE +F MP ++D MAE ++L PP+++    +D   + 
Sbjct: 147 DMEETMVEAIYTPEQSEGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNYDGEGDG 206

Query: 171 VEFTLWS 177
            + +LWS
Sbjct: 207 -DVSLWS 212

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0L0|DRE1A_ARATH Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2

 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 11/186 (5%)

Query: 3   SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKAARA 61
           +S+  K+ AGRKKF+ETRHP+Y+GVRRRN GKWVCE+REPNKK+RIWLGTF + + AARA
Sbjct: 30  ASSCPKKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARA 89

Query: 62  YDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAA----------MEAAEKLSSPS 111
           +D AALALRG SA LNF ++A  LR  +S   +DIQ AA          M  A       
Sbjct: 90  HDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDEMCDATTDHGFD 149

Query: 112 SSKPCMESNSENVQDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETV 171
             +  +E+     Q     ++ +E +F MP ++  MAE ++L  P+++     +   +  
Sbjct: 150 MEETLVEAIYTAEQSENAFYMHDEAMFEMPSLLANMAEGMLLPLPSVQWNHNHEVDGDDD 209

Query: 172 EFTLWS 177
           + +LWS
Sbjct: 210 DVSLWS 215

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H273|DRE1E_ORYSJ Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. japonica GN=DREB1E PE=2 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 107/189 (56%), Gaps = 16/189 (8%)

Query: 3   SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKAARA 61
           SS   KR+AGR KF+ETRHPVYKGVR RN G+WVCE+REP+ K RIWLGTF + + AARA
Sbjct: 32  SSAPPKRRAGRTKFKETRHPVYKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAARA 91

Query: 62  YDAAALALRGNSASLNFPEAAGALRRAK-SDDVRDIQCAAMEAAEKLSSPSSSKPCMESN 120
           +D AA+ALRG +A LNF ++   LR         +I+ AA+EAAE L  P+  +    + 
Sbjct: 92  HDVAAMALRGRAACLNFADSPRRLRVPPLGAGHEEIRRAAVEAAE-LFRPAPGQHNAAAE 150

Query: 121 SENVQDSRREFVDEEEV------------FNMPGIIDGMAEALILTPPAMKSGFKWDDLD 168
           +     ++      E              F M G +D MA+ +++ PP +     W + D
Sbjct: 151 AAAAVAAQATAASAELFADFPCYPMDGLEFEMQGYLD-MAQGMLIEPPPLAGQSTWAEED 209

Query: 169 ETVEFTLWS 177
              E  LWS
Sbjct: 210 YDCEVNLWS 218

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XWL6|DRE1E_ORYSI Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. indica GN=DREB1E PE=3 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 107/189 (56%), Gaps = 16/189 (8%)

Query: 3   SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKAARA 61
           SS   KR+AGR KF+ETRHPVYKGVR RN G+WVCE+REP+ K RIWLGTF + + AARA
Sbjct: 32  SSAPPKRRAGRTKFKETRHPVYKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAARA 91

Query: 62  YDAAALALRGNSASLNFPEAAGALRRAK-SDDVRDIQCAAMEAAEKLSSPSSSKPCMESN 120
           +D AA+ALRG +A LNF ++   LR         +I+ AA+EAAE L  P+  +    + 
Sbjct: 92  HDVAAMALRGRAACLNFADSPRRLRVPPLGAGHEEIRRAAVEAAE-LFRPAPGQHNAAAE 150

Query: 121 SENVQDSRREFVDEEEV------------FNMPGIIDGMAEALILTPPAMKSGFKWDDLD 168
           +     ++      E              F M G +D MA+ +++ PP +     W + D
Sbjct: 151 AAAAVAAQATAASAELFADFPCYPMDGLEFEMQGYLD-MAQGMLIEPPPLAGQSTWAEED 209

Query: 169 ETVEFTLWS 177
              E  LWS
Sbjct: 210 YDCEVNLWS 218

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SGJ6|DRE1E_ARATH Dehydration-responsive element-binding protein 1E OS=Arabidopsis thaliana GN=DREB1E PE=2 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 102/175 (58%), Gaps = 13/175 (7%)

Query: 8   KRKAGRKKFQETRHPVYKGVRRRNG-KWVCELREPNKKSRIWLGTFASPDKAARAYDAAA 66
           K++AGR+ F+ETRHP+Y+GVRRR+G KWVCE+REP  + R+WLGT+ + D AARA+D A 
Sbjct: 14  KKRAGRRIFKETRHPIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMAARAHDVAV 73

Query: 67  LALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCMESNSENVQD 126
           LALRG SA LNF ++A  L    S D   I+  A EAAE    P        S    V  
Sbjct: 74  LALRGRSACLNFSDSAWRLPVPASTDPDTIRRTAAEAAEMFRPPEF------STGITVLP 127

Query: 127 SRREFVDEEEVFNMPGIIDGMAEALILTPPA----MKSGFKWDDLDETVEFTLWS 177
           S  EF   +E   + G++  +AE  +++PP     M +    D+     + +LWS
Sbjct: 128 SASEFDTSDE--GVAGMMMRLAEEPLMSPPRSYIDMNTSVYVDEEMCYEDLSLWS 180

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN86|DRE1F_ARATH Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1

 Score =  120 bits (301), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 80/115 (69%), Gaps = 6/115 (5%)

Query: 8   KRKAGRKKFQETRHPVYKGVRRRNG-KWVCELREPNKKSRIWLGTFASPDKAARAYDAAA 66
           K++AGR+ F+ETRHPVY+G+RRRNG KWVCE+REP  + RIWLGT+ + D AARA+D A 
Sbjct: 14  KKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAV 73

Query: 67  LALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAE-----KLSSPSSSKPC 116
           LALRG SA LNF ++A  L   +S+D   I+  A EAAE      L S  +  PC
Sbjct: 74  LALRGRSACLNFADSAWRLPVPESNDPDVIRRVAAEAAEMFRPVDLESGITVLPC 128

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
225440970	238	PREDICTED: dehydration-responsive elemen	0.960	0.718	0.583	6e-53
255575393	227	Dehydration-responsive element-binding p	0.988	0.775	0.545	7e-52
224105015	220	AP2/ERF domain-containing transcription	0.955	0.772	0.605	4e-51
134038598	197	C-repeat binding facor 6 [Populus tricho	0.960	0.868	0.572	1e-49
356548375	195	PREDICTED: dehydration-responsive elemen	0.966	0.882	0.551	2e-48
148246375	200	putative CBF/DREB transcription factor [	0.882	0.785	0.573	2e-47
356537053	185	PREDICTED: dehydration-responsive elemen	0.955	0.918	0.554	3e-47
356547143	243	PREDICTED: dehydration-responsive elemen	0.966	0.707	0.530	4e-47
156186799	247	CBF1-like protein [Vitis amurensis]	0.971	0.700	0.493	6e-47
147864580	210	hypothetical protein VITISV_004704 [Viti	0.955	0.809	0.528	6e-47

>gi|225440970|ref|XP_002277273.1| PREDICTED: dehydration-responsive element-binding protein 1F-like [Vitis vinifera]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 130/173 (75%), Gaps = 2/173 (1%)

Query: 4   STAQKRKAGRKKFQETRHPVYKGVRRRNGKWVCELREPNKKSRIWLGTFASPDKAARAYD 63
           S++QKRKAGRKKF+ETRHP+YKGVR+RNGKWVCELR+P K++RIWLGTF  PD AARAYD
Sbjct: 40  SSSQKRKAGRKKFKETRHPLYKGVRQRNGKWVCELRQPRKRNRIWLGTFPCPDMAARAYD 99

Query: 64  AAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCMESNSEN 123
            AALA++G+SASLNFPE+   L RA S  + DI+ AA++AA+     ++ K   +   + 
Sbjct: 100 VAALAIKGDSASLNFPESVSQLPRAASSSIEDIRSAALKAAQTFE--ATEKEKEKEREDE 157

Query: 124 VQDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVEFTLW 176
             D  + FVDEE +FNMP ++D MAE LILTP A+K GF W+ + E  +FTLW
Sbjct: 158 DSDPCQLFVDEEALFNMPTLLDSMAEGLILTPLALKKGFNWNSIKEAEDFTLW 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575393|ref|XP_002528599.1| Dehydration-responsive element-binding protein 1B, putative [Ricinus communis] gi|223531995|gb|EEF33807.1| Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/200 (54%), Positives = 133/200 (66%), Gaps = 24/200 (12%)

Query: 3   SSTAQKRKAGRKKFQETRHPVYKGVRRRNGKWVCELREP-NKKSRIWLGTFASPDKAARA 61
           S   +KRKAGRKKFQETRHPVY GVRRRNGKWV ELR+P N KSRIWLGTF SPD AARA
Sbjct: 28  SMATKKRKAGRKKFQETRHPVYNGVRRRNGKWVSELRQPYNNKSRIWLGTFPSPDMAARA 87

Query: 62  YDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCMESN- 120
           YD AA ALRG+SASLNFPE+   L +A+S  ++DIQ AA+EAA++  S          + 
Sbjct: 88  YDVAAFALRGDSASLNFPESVHLLPQARSTSIKDIQYAALEAADQSVSGGGGGGSDVDHL 147

Query: 121 -----------------SENV----QDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMK 159
                            S+NV      +   F+DEEE+FNMP ++D MAE LILTPPAMK
Sbjct: 148 FQCSSSSLSFCSSTIEGSDNVGKDWNKNMNMFLDEEELFNMPALLDSMAEGLILTPPAMK 207

Query: 160 SGFKWDDL-DETVEFTLWSD 178
            GF W+++ D+ V+   W+D
Sbjct: 208 KGFNWNNVEDDPVDLFFWTD 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105015|ref|XP_002313656.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222850064|gb|EEE87611.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 106/175 (60%), Positives = 125/175 (71%), Gaps = 5/175 (2%)

Query: 7   QKRKAGRKKFQETRHPVYKGVRRRNG-KWVCELREPNKKSRIWLGTFASPDKAARAYDAA 65
           +K KAGRKKF+ETRHPVY+GVRRRNG KWVCE+REPNKKSRIW+GTF SP+ AARA+D A
Sbjct: 42  KKNKAGRKKFKETRHPVYRGVRRRNGNKWVCEVREPNKKSRIWVGTFKSPEMAARAHDVA 101

Query: 66  ALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSS--PSSSKPCMESNSEN 123
           ALAL+G  A+LNF ++A  L RAKS   RDIQ AA+ A E  S+   S S  C      N
Sbjct: 102 ALALKGELAALNFLDSALILPRAKSSSARDIQRAALAATEPFSNMVMSCSNNCCSEKVPN 161

Query: 124 VQDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVEFTLWSD 178
              S   F DEE +FNMPG++D MAE LILTPPAM  G  WDD+  + + TLW D
Sbjct: 162 --HSNATFFDEEALFNMPGLLDSMAEGLILTPPAMARGVYWDDMACSTDLTLWED 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134038598|gb|ABO48367.1| C-repeat binding facor 6 [Populus trichocarpa]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 125/187 (66%), Gaps = 16/187 (8%)

Query: 3   SSTAQKRKAGRKKFQETRHPVYKGVRRRNG-KWVCELREPNKKSRIWLGTFASPDKAARA 61
           +S   K KAGRKKF+ETRHPVY+GVRRRNG KWVCE+REPNKKSRIW+GTF SP+ AARA
Sbjct: 10  TSCFMKNKAGRKKFKETRHPVYRGVRRRNGNKWVCEVREPNKKSRIWVGTFKSPEMAARA 69

Query: 62  YDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLS----------SPS 111
           +D AALAL+G  A+LNF ++A  L RAKS   RDIQ AA+ A E L           SP 
Sbjct: 70  HDVAALALKGELAALNFLDSALILPRAKSSSARDIQRAALAATEVLGRSASSCSSSSSPD 129

Query: 112 SSKPCMESNSENVQDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETV 171
             K     N  N       F DEE +FNMPG++D MAE LILTPPAM  G  WDD+  + 
Sbjct: 130 HKKLSCVPNHSNAT-----FFDEEALFNMPGLLDSMAEGLILTPPAMARGVYWDDMACST 184

Query: 172 EFTLWSD 178
           + TLW D
Sbjct: 185 DLTLWED 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548375|ref|XP_003542578.1| PREDICTED: dehydration-responsive element-binding protein 1F-like [Glycine max]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/194 (55%), Positives = 132/194 (68%), Gaps = 22/194 (11%)

Query: 7   QKRKAGRKKFQETRHPVYKGVRRRNGKWVCELREP-NKKSRIWLGTFASPDKAARAYDAA 65
           QKR+AGRKKF ETRHPVYKGVR+RNGKWVCELR+P NK +R+WLGTF  PD AA AYD A
Sbjct: 2   QKRRAGRKKFHETRHPVYKGVRQRNGKWVCELRQPNNKNARVWLGTFTHPDMAAIAYDVA 61

Query: 66  ALALRGNSASLNFPEAAGALRR--AKSDDVRDIQCAAMEAAEKLSSPSSSKPCM------ 117
           ALA +G++ASLNFP AA +L R  +++  VR IQ AA +AAEK  S + S+         
Sbjct: 62  ALAFKGDNASLNFPHAATSLPRLNSRTCSVRAIQFAATQAAEKHFSCAESQQLQREGSLE 121

Query: 118 ----------ESNSENVQ---DSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKW 164
                     E +SE       S R F DEEEVFNMP +++ MAEALI+TPPA++ GF W
Sbjct: 122 GSGSGSFSLDEDSSEFSSKEGGSERFFWDEEEVFNMPELLNSMAEALIITPPALERGFNW 181

Query: 165 DDLDETVEFTLWSD 178
              + TV+ TLWS+
Sbjct: 182 VGGETTVDLTLWSN 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148246375|gb|ABQ53132.1| putative CBF/DREB transcription factor [Rosa chinensis]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 124/183 (67%), Gaps = 26/183 (14%)

Query: 2   KSSTAQKRKAGRKKFQETRHPVYKGVRRRNGKWVCELREPN-KKSRIWLGTFASPDKAAR 60
           +S   +KRKAGRKKF+ETRHPVYKGVR+RNGKWVCE+R+P  KKSR+WLGTF  P+ AAR
Sbjct: 38  QSGVTKKRKAGRKKFRETRHPVYKGVRQRNGKWVCEMRQPGLKKSRVWLGTFTCPEMAAR 97

Query: 61  AYDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCMES- 119
           AYD AALAL+G SA LNFP+ A A     S                    S S P + S 
Sbjct: 98  AYDVAALALKGESAQLNFPDEAKASPSWTS--------------------SMSLPELTSM 137

Query: 120 -NSENVQ-DSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWD--DLDETVEFTL 175
            N E V+  S + +VDEEE+FNMP I+D MAE LILTPPA+K GF WD  DL+  VEF+L
Sbjct: 138 VNLEKVEVGSSKGYVDEEELFNMPEILDSMAEGLILTPPALKKGFNWDDYDLENAVEFSL 197

Query: 176 WSD 178
           WSD
Sbjct: 198 WSD 200

Source: Rosa chinensis

Species: Rosa chinensis

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537053|ref|XP_003537045.1| PREDICTED: dehydration-responsive element-binding protein 1F-like [Glycine max]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 126/184 (68%), Gaps = 14/184 (7%)

Query: 7   QKRKAGRKKFQETRHPVYKGVRRRNGKWVCELREP-NKKSRIWLGTFASPDKAARAYDAA 65
           QKR+AGRKKF ETRHPVYKGVR+RNGKWV ELR+P NK +R+WLGTF  PD AA AYD A
Sbjct: 2   QKRRAGRKKFHETRHPVYKGVRQRNGKWVSELRQPNNKNARVWLGTFPHPDMAAIAYDVA 61

Query: 66  ALALRGNSASLNFPEAAGALRR--AKSDDVRDIQCAAMEAAEKLSSPSSSKPC------- 116
           ALA +G+SASLNFP AA +  R  +++  VR IQ AA +AAEK  S   S+         
Sbjct: 62  ALAFKGDSASLNFPNAATSFPRLNSRTCSVRAIQFAATQAAEKHFSCVESQQLQREGSGS 121

Query: 117 ----MESNSENVQDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVE 172
               ++ +S       R F DEEEVFNMP +++ MAEALI+TPPA++ GF W   + TV+
Sbjct: 122 GSFSLDDDSSEFSSQGRFFWDEEEVFNMPELLNCMAEALIITPPALERGFNWVGGETTVD 181

Query: 173 FTLW 176
            TLW
Sbjct: 182 LTLW 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547143|ref|XP_003541976.1| PREDICTED: dehydration-responsive element-binding protein 1F-like [Glycine max]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 97/183 (53%), Positives = 123/183 (67%), Gaps = 11/183 (6%)

Query: 7   QKRKAGRKKFQETRHPVYKGVRRRNG-KWVCELREPNKKSRIWLGTFASPDKAARAYDAA 65
            KRKAGRKKF+ETRHPVY+GVR+RNG KWVCE+REPNKKSRIWLGT+ SP+ AARA+D A
Sbjct: 61  HKRKAGRKKFRETRHPVYRGVRQRNGNKWVCEVREPNKKSRIWLGTYPSPEMAARAHDVA 120

Query: 66  ALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSS------SKPCMES 119
            LAL+G SA  NFP++   L  A S    DI+ AA + +      SS      +KPC+  
Sbjct: 121 VLALKGTSAVFNFPDSVSLLPVANSSSAADIRLAASKVSSVFGPSSSSSSRVETKPCLVD 180

Query: 120 ----NSENVQDSRREFVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDETVEFTL 175
                  NV + +  F DEE  +NMP  +D MAEAL++TPP+MK  F WD++D   + TL
Sbjct: 181 GFVKTENNVDEVKTVFFDEEAFYNMPVFLDSMAEALLITPPSMKRAFDWDEVDCETDLTL 240

Query: 176 WSD 178
           W+D
Sbjct: 241 WTD 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156186799|gb|ABU55656.1| CBF1-like protein [Vitis amurensis]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 133/217 (61%), Gaps = 44/217 (20%)

Query: 6   AQKRKAGRKKFQETRHPVYKGVRRRNG-KWVCELREPNKKSRIWLGTFASPDKAARAYDA 64
             KRKAGRKKF+ETRHP+Y+GVR+RNG KWVCE+REP KKSRIWLGTF +P+ AARA+D 
Sbjct: 30  GHKRKAGRKKFRETRHPIYRGVRQRNGNKWVCEVREPLKKSRIWLGTFPTPEMAARAHDV 89

Query: 65  AALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKL----------------- 107
           AALALRG+ ASLNFP++A  L R KS    DIQ AA+EA +                   
Sbjct: 90  AALALRGHFASLNFPDSAWRLPRPKSSSAEDIQVAALEATKAFNPTAPSSSSLASALDNM 149

Query: 108 -----------SSPSSSKPCMESN-------------SENVQD-SRREFVDEEEVFNMPG 142
                      +SP+   P ++S              SE V D S   F+DEE +FNM G
Sbjct: 150 SGVADSKKVLETSPNVESPKLKSQRMVLEVSPVDTKRSEKVGDGSTTVFMDEEAMFNMQG 209

Query: 143 IIDGMAEALILTPPAMKSGFKWDD-LDETVEFTLWSD 178
           +I+ MAE L+LTPPAM  GF WDD  D  ++ +LW+D
Sbjct: 210 LINSMAEGLLLTPPAMCKGFSWDDATDSHIDLSLWND 246

Source: Vitis amurensis

Species: Vitis amurensis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864580|emb|CAN79383.1| hypothetical protein VITISV_004704 [Vitis vinifera]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/191 (52%), Positives = 126/191 (65%), Gaps = 21/191 (10%)

Query: 3   SSTAQKRKAGRKKFQETRHPVYKGVRRRNG-KWVCELREPNKKSRIWLGTFASPDKAARA 61
           SS   KRKAGRKKF+ETRHPVY+GVR+RNG +WVCE+R+P  KSRIWLGTF++P+ AARA
Sbjct: 25  SSPVHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEVRDPKTKSRIWLGTFSTPEMAARA 84

Query: 62  YDAAALALRGNSASLNFPEAAGALRRAKSDDVRDIQCAAMEAAEKLSSPSSSKPCMESNS 121
           +D AALA RGN A+LNFP++A  L RAKS    DIQ       E  +S S   P +ES  
Sbjct: 85  HDVAALAFRGNFAALNFPDSASRLPRAKSSSAGDIQ------RELETSCSEDSPQLESRK 138

Query: 122 ENV----QDSRRE----------FVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDL 167
           + V    +DS             F+DEE +FNMPG+I+ MAE L+L PP M  GF WDD 
Sbjct: 139 KVVGVALEDSESSEGAPYGSSTVFMDEEALFNMPGLINSMAEGLLLAPPTMLGGFSWDDT 198

Query: 168 DETVEFTLWSD 178
               + +LW+D
Sbjct: 199 TSYTDLSLWND 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2173113	224	CBF4 "C-repeat-binding factor	0.971	0.772	0.366	3.1e-28
TAIR|locus:2131854	213	CBF1 "C-repeat/DRE binding fac	0.971	0.812	0.367	1.3e-27
TAIR|locus:2131834	216	CBF2 "C-repeat/DRE binding fac	0.977	0.805	0.368	3.5e-27
TAIR|locus:2131849	216	DREB1A "dehydration response e	0.977	0.805	0.374	9.4e-27
TAIR|locus:2195062	192	AT1G12630 [Arabidopsis thalian	0.455	0.421	0.407	4.7e-22
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.567	0.463	0.480	5.7e-20
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.561	0.423	0.475	3.1e-19
TAIR|locus:2195052	209	DDF1 "DWARF AND DELAYED FLOWER	0.477	0.406	0.5	5.1e-19
TAIR|locus:2044845	184	HRD "HARDY" [Arabidopsis thali	0.814	0.788	0.337	5.1e-19
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.494	0.298	0.460	1.7e-18

TAIR|locus:2173113 CBF4 "C-repeat-binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 70/191 (36%), Positives = 101/191 (52%)

Query:     3 SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKXXXX 61
             +S+  K++AGRKKF+ETRHP+Y+GVR+RN GKWVCE+REPNKKSRIWLGTF + +     
Sbjct:    33 ASSCPKKRAGRKKFRETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARA 92

Query:    62 XXXXXXXXXGNSASLNFPEAAGALRRAKSDDVRDIQCAAMXXX------XXXXXXXXXXX 115
                      G SA LNF ++A  LR  ++   ++IQ AA                     
Sbjct:    93 HDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAAMAFQNETTTEGSKTAAE 152

Query:   116 XXXXXXXNVQDSRRE---------FVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDD 166
                     V++  R          ++D+E +  MP   + MAE ++L PP +  G+  +D
Sbjct:   153 AEEAAGEGVREGERRAEEQNGGVFYMDDEALLGMPNFFENMAEGMLLPPPEV--GWNHND 210

Query:   167 LDETVEFTLWS 177
              D   + +LWS
Sbjct:   211 FDGVGDVSLWS 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2131854 CBF1 "C-repeat/DRE binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 69/188 (36%), Positives = 104/188 (55%)

Query:     3 SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKXXXX 61
             +++  K+ AGRKKF+ETRHP+Y+GVR+RN GKWV E+REPNKK+RIWLGTF + +     
Sbjct:    27 ATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARA 86

Query:    62 XXXXXXXXXGNSASLNFPEAAGALRRAKSDDVRDIQCAAMXXXXXXXXXXXXXXXXXXXX 121
                      G SA LNF ++A  LR  +S   +DIQ AA                     
Sbjct:    87 HDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAA-AEAALAFQDETCDTTTTNHG 145

Query:   122 XNVQDSRRE------------FVDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDE 169
              +++++  E            ++DEE +F MP ++D MAE ++L PP+++    +D   +
Sbjct:   146 LDMEETMVEAIYTPEQSEGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNYDGEGD 205

Query:   170 TVEFTLWS 177
               + +LWS
Sbjct:   206 G-DVSLWS 212

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009409 "response to cold" evidence=IEP;IMP;TAS

GO:0009631 "cold acclimation" evidence=IEP;IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

TAIR|locus:2131834 CBF2 "C-repeat/DRE binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 69/187 (36%), Positives = 102/187 (54%)

Query:     3 SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKXXXX 61
             +++  K+ AGRKKF+ETRHP+Y+GVR+RN GKWVCELREPNKK+RIWLGTF + +     
Sbjct:    30 ATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARA 89

Query:    62 XXXXXXXXXGNSASLNFPEAAGALRRAKSDDVRDIQCAA----------MXXXXXXXXXX 111
                      G SA LNF ++A  LR  +S   ++IQ AA          M          
Sbjct:    90 HDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAALNFQDEMCHMTTDAHGL 149

Query:   112 XXXXXXXXXXXNVQDSRREF-VDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWDDLDET 170
                          + S+  F +DEE +  M  ++D MAE ++L  P+++  + +D ++  
Sbjct:   150 DMEETLVEAIYTPEQSQDAFYMDEEAMLGMSSLLDNMAEGMLLPSPSVQWNYNFD-VEGD 208

Query:   171 VEFTLWS 177
              + +LWS
Sbjct:   209 DDVSLWS 215

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP;TAS

TAIR|locus:2131849 DREB1A "dehydration response element B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 70/187 (37%), Positives = 99/187 (52%)

Query:     3 SSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKXXXX 61
             +S+  K+ AGRKKF+ETRHP+Y+GVRRRN GKWVCE+REPNKK+RIWLGTF + +     
Sbjct:    30 ASSCPKKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARA 89

Query:    62 XXXXXXXXXGNSASLNFPEAAGALRRAKSDDVRDIQCAAMXXX---------XXXXXXXX 112
                      G SA LNF ++A  LR  +S   +DIQ AA                     
Sbjct:    90 HDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAALAFQDEMCDATTDHGFD 149

Query:   113 XXXXXXXXXXNVQDSRREF-VDEEEVFNMPGIIDGMAEALILTPPAMKSGFKWD-DLDET 170
                         + S   F + +E +F MP ++  MAE ++L  P+++     + D D+ 
Sbjct:   150 MEETLVEAIYTAEQSENAFYMHDEAMFEMPSLLANMAEGMLLPLPSVQWNHNHEVDGDDD 209

Query:   171 VEFTLWS 177
              + +LWS
Sbjct:   210 -DVSLWS 215

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IEP;RCA;IDA;IMP;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP;IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2195062 AT1G12630 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 33/81 (40%), Positives = 45/81 (55%)

Query:    20 RHPVYKGVRRRNGKWVCELREPNKKSRIWLGTFASPDKXXXXXXXXXXXXXGNSASLNFP 79
             + PVY+G+R R+GKWV E+REP K +RIWLGT+   +              G  A LNFP
Sbjct:    15 KDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFP 74

Query:    80 EAAGALRRAKSDDVRDIQCAA 100
              + G+    +S    DI+ AA
Sbjct:    75 GSVGSYPVPESTSAADIRAAA 95

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 50/104 (48%), Positives = 66/104 (63%)

Query:     1 QKSSTAQKRKAGRKK-FQET-RHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDK 57
             + S+  Q+ +  +KK  +++ +HPVY+GVR+RN GKWV E+REP KKSRIWLGTF SP+ 
Sbjct:    11 EASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEM 70

Query:    58 XXXXXXXXXXXXXGNSASLNFPEAAGALRRAKSDDVRDIQCAAM 101
                          G SA LNFP+ AG+  R  S   RDIQ AA+
Sbjct:    71 AARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAAL 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 48/101 (47%), Positives = 58/101 (57%)

Query:     2 KSSTAQKRKAGRKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKXXX 60
             KS   Q  K  ++     +HPVY+GVR RN GKWV E+REP KKSRIWLGTF +P+    
Sbjct:    29 KSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAAR 88

Query:    61 XXXXXXXXXXGNSASLNFPEAAGALRRAKSDDVRDIQCAAM 101
                       G +A LNFPE A +  R  S   RDIQ AA+
Sbjct:    89 AHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAAL 129

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2195052 DDF1 "DWARF AND DELAYED FLOWERING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 43/86 (50%), Positives = 57/86 (66%)

Query:     8 KRKAGRKKFQETRHPVYKGVRRRNG-KWVCELREPNKKSRIWLGTFASPDKXXXXXXXXX 66
             K++AGR+ F+ETRHPVY+G+RRRNG KWVCE+REP  + RIWLGT+ + D          
Sbjct:    14 KKRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAV 73

Query:    67 XXXXGNSASLNFPEAAGALRRAKSDD 92
                 G SA LNF ++A  L   +S+D
Sbjct:    74 LALRGRSACLNFADSAWRLPVPESND 99

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010371 "regulation of gibberellin biosynthetic process" evidence=IMP

GO:0016049 "cell growth" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009651 "response to salt stress" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0009408 "response to heat" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0050826 "response to freezing" evidence=IMP

TAIR|locus:2044845 HRD "HARDY" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 53/157 (33%), Positives = 75/157 (47%)

Query:    12 GRKKFQETRHPVYKGVRRR--NGKWVCELREPNKKSRIWLGTFASPDKXXXXXXXXXXXX 69
             G  K    RHP+Y+GVR+R  + KWV E+REP K +RIWLGTF++P+             
Sbjct:     3 GTSKDNGGRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALAL 62

Query:    70 XGNSASLNFPEAAGALRRAKSDDVRDIQCAAMXXXXXXXXXXXXXXXXXXXXXN----VQ 125
              G+ A LNFP +  +L    S    DIQ AA                             
Sbjct:    63 KGSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACM 122

Query:   126 DSRRE------FVDEEEVFNMPGIIDGMAEALILTPP 156
             +S  +      F+DE+ VF+MP ++  MAE ++L+PP
Sbjct:   123 NSSYDNTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPP 159

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 41/89 (46%), Positives = 53/89 (59%)

Query:    13 RKKFQETRHPVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKXXXXXXXXXXXXXG 71
             RK     +HP Y+GVR R+ GKWV E+REP KKSRIWLGT+ + +              G
Sbjct:    89 RKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKG 148

Query:    72 NSASLNFPEAAGALRRAKSDDVRDIQCAA 100
              +A LNFP+ AG L R  ++  +DIQ AA
Sbjct:   149 TTAYLNFPKLAGELPRPVTNSPKDIQAAA 177

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: CBF5 C-repeat binding facor 5 (175 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-26
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-25
pfam00847	53	pfam00847, AP2, AP2 domain	5e-11

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 94.3 bits (235), Expect = 4e-26
 Identities = 35/58 (60%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 24 YKGVRRR-NGKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPE 80
          Y+GVR+R  GKWV E+R+P+K  R+WLGTF + ++AARAYD AA   RG SA LNFP 
Sbjct: 2  YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 92.3 bits (230), Expect = 2e-25
 Identities = 37/59 (62%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 24 YKGVRRR-NGKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEA 81
          Y+GVR+R  GKWV E+R+P+   RIWLGTF + ++AARAYD AAL LRG+SA LNFP++
Sbjct: 3  YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 55.0 bits (133), Expect = 5e-11
 Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 22 PVYKGVRRR--NGKWVCELREPN--KKSRIWLGTFASPDKAARAYDAAALALRG 71
            YKGVR     G+WV E+R+P   KK R  LGTF + ++AARA  AA L LRG
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.83
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
PHA00280	121	putative NHN endonuclease	99.55
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.06

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.83  E-value=8.3e-21  Score=128.69  Aligned_cols=60  Identities=62%  Similarity=1.130  Sum_probs=56.1

Q ss_pred             CCeEEEEeeC-CeEEEEEeecCCCcEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 038285           22 PVYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEA   81 (178)
Q Consensus        22 s~yrGVr~r~-~kW~A~I~~p~~~k~i~LGtf~t~eeAA~AyD~Aa~~l~g~~a~lNFp~s   81 (178)
                      |+|+||++++ +||+|+|+++..++++|||+|+|+|||++|||.|++.++|..+.+|||+|
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998777 69999999966699999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=5.5e-20  Score=126.07  Aligned_cols=62  Identities=56%  Similarity=1.052  Sum_probs=58.1

Q ss_pred             CeEEEEeeC-CeEEEEEeecCCCcEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCcccc
Q 038285           23 VYKGVRRRN-GKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEAAGA   84 (178)
Q Consensus        23 ~yrGVr~r~-~kW~A~I~~p~~~k~i~LGtf~t~eeAA~AyD~Aa~~l~g~~a~lNFp~s~~~   84 (178)
                      +|+||+++. |||+|+|++|.+++++|||+|+|+||||+|||.|++.++|..+.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599998766 69999999999999999999999999999999999999999999999998763

>PHA00280 putative NHN endonuclease

Probab=99.55  E-value=1.3e-14  Score=111.62  Aligned_cols=70  Identities=13%  Similarity=0.145  Sum_probs=61.7

Q ss_pred             CcchhhhhhccCCCCCCCCCCCeEEEEe--eCCeEEEEEeecCCCcEEEecCCCCHHHHHHHHHHHHHHhcCCCCC
Q 038285            2 KSSTAQKRKAGRKKFQETRHPVYKGVRR--RNGKWVCELREPNKKSRIWLGTFASPDKAARAYDAAALALRGNSAS   75 (178)
Q Consensus         2 r~~~~~k~~~gr~k~~~~~~s~yrGVr~--r~~kW~A~I~~p~~~k~i~LGtf~t~eeAA~AyD~Aa~~l~g~~a~   75 (178)
                      |+++...+..|+++ +++++|+|+||+.  +.+||+|+|++  +||+++||.|+|+|+|+.||+ ++.+|+|.+|.
T Consensus        48 r~~T~~eN~~N~~~-~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         48 RLALPKENSWNMKT-PKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             hhcCHHHHhcccCC-CCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            67888889999765 5788999999975  44799999999  999999999999999999997 67789998875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.06  E-value=3.9e-10  Score=74.47  Aligned_cols=51  Identities=31%  Similarity=0.522  Sum_probs=44.1

Q ss_pred             CCeEEEEeeC--CeEEEEEeecCC---CcEEEecCCCCHHHHHHHHHHHHHHhcCC
Q 038285           22 PVYKGVRRRN--GKWVCELREPNK---KSRIWLGTFASPDKAARAYDAAALALRGN   72 (178)
Q Consensus        22 s~yrGVr~r~--~kW~A~I~~p~~---~k~i~LGtf~t~eeAA~AyD~Aa~~l~g~   72 (178)
                      |+|+||+...  ++|+|+|+++..   +++++||.|.++++|++|++.+.+.++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899998755  599999999521   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	178
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-04
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-04

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 24 YKGVRRRN-GKWVCELREPNKK-SRIWLGTFASPDKXXXXXXXXXXXXXGNSASLNFP 79
          Y+GVR+R  GK+  E+R+P K  +R+WLGTF + +              G+ A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 24 YKGVRRRN-GKWVCELREPNKK-SRIWLGTFASPDKXXXXXXXXXXXXXGNSASLNFP 79
          Y+GVR+R  GK+  E+R+P K  +R+WLGTF + +              G+ A LNFP
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
1gcc_A	63	Ethylene responsive element binding factor 1; tran	7e-23

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 85.5 bits (212), Expect = 7e-23
 Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 2/59 (3%)

Query: 24 YKGVRRRN-GKWVCELREPNKK-SRIWLGTFASPDKAARAYDAAALALRGNSASLNFPE 80
          Y+GVR+R  GK+  E+R+P K  +R+WLGTF + + AA AYD AA  +RG+ A LNFP 
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	92.75
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	83.1

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=3.8e-25  Score=151.19  Aligned_cols=60  Identities=50%  Similarity=0.937  Sum_probs=56.1

Q ss_pred             CeEEEEeeC-CeEEEEEeecC-CCcEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCcc
Q 038285           23 VYKGVRRRN-GKWVCELREPN-KKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEAA   82 (178)
Q Consensus        23 ~yrGVr~r~-~kW~A~I~~p~-~~k~i~LGtf~t~eeAA~AyD~Aa~~l~g~~a~lNFp~s~   82 (178)
                      +||||+++. |||+|+|++|. ++++||||+|+|+||||+|||.|+++++|..+++|||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            599999888 69999999997 4799999999999999999999999999999999999863

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=92.75  E-value=0.0025  Score=49.83  Aligned_cols=58  Identities=9%  Similarity=-0.109  Sum_probs=40.1

Q ss_pred             CcchhhhhhccCCCCCCCCCCCeEEEEe-eCCeEEEEEeecCCCcEEEecCCCCHHHHHHHHHH
Q 038285            2 KSSTAQKRKAGRKKFQETRHPVYKGVRR-RNGKWVCELREPNKKSRIWLGTFASPDKAARAYDA   64 (178)
Q Consensus         2 r~~~~~k~~~gr~k~~~~~~s~yrGVr~-r~~kW~A~I~~p~~~k~i~LGtf~t~eeAA~AyD~   64 (178)
                      ||++...+..++......  ..++||.. +.++|.+.|..  . +.++||.|.|.+|||++|..
T Consensus        89 ~~~t~~eN~~~~~~~~~~--~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv  147 (174)
T 1u3e_M           89 RWVTQKINVENQMSRGTL--NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL  147 (174)
T ss_dssp             EEECHHHHHHHHHHHTCC--CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred             EECCHHHHhhcccccCcc--cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence            678888777665543212  22467643 22478898888  5 67789999999999999743

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=83.10  E-value=0.77  Score=31.81  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=20.8

Q ss_pred             CCCCCeEEEEeeC--CeEEEEEeecCCCcEE
Q 038285           19 TRHPVYKGVRRRN--GKWVCELREPNKKSRI   47 (178)
Q Consensus        19 ~~~s~yrGVr~r~--~kW~A~I~~p~~~k~i   47 (178)
                      +.+|+|.||+..+  +.|+|.-.+  ++++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            5789999997655  699999998  56554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-24

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.8 bits (218), Expect = 2e-24
 Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 2/59 (3%)

Query: 24 YKGVRRRN-GKWVCELREPNKK-SRIWLGTFASPDKAARAYDAAALALRGNSASLNFPE 80
          Y+GVR+R  GK+  E+R+P K  +R+WLGTF + + AA AYD AA  +RG+ A LNFP 
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=2e-25  Score=151.06  Aligned_cols=59  Identities=51%  Similarity=0.952  Sum_probs=54.7

Q ss_pred             CeEEEEeeC-CeEEEEEeecC-CCcEEEecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Q 038285           23 VYKGVRRRN-GKWVCELREPN-KKSRIWLGTFASPDKAARAYDAAALALRGNSASLNFPEA   81 (178)
Q Consensus        23 ~yrGVr~r~-~kW~A~I~~p~-~~k~i~LGtf~t~eeAA~AyD~Aa~~l~g~~a~lNFp~s   81 (178)
                      +||||++|+ |||+|+|++|. ++++||||+|+|+||||+|||.|++.++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            499999887 69999999984 668999999999999999999999999999999999964