Citrus Sinensis ID: 038380

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGPAAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPTPVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTPGLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNADTHPGGVAASVAAAARLNENVNG
cccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccCEEEEccccccEEEEEEEccCEcccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccc
*********************GDFFNVSGDLAQKPIAPEDAAMM************************************DVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRH****************QGAITIGEALETT****************IQ***********TTPGLAASAQS***H*****RDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNADTHPGGVAASVAAAA*L******
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MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGPAAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPTPVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTPGLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNADTHPGGVAASVAAAARLNENVNG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Late embryogenesis abundant protein D-34 LEA proteins are late embryonic proteins abundant in higher plant seed embryos. There are two subsets of LEA proteins (5a and 5b), the first ones are expressed when the cotyledon weight reach 80 mg and the second set are expressed above 100 mg. The function of those proteins is not known.probableP09444

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3CGI, chain A
Confidence level:probable
Coverage over the Query: 101-122
View the alignment between query and template
View the model in PyMOL