Citrus Sinensis ID: 038380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGPAAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPTPVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTPGLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNADTHPGGVAASVAAAARLNENVNG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccEEEEEccccccEEEEEEEccEEcccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEcccEEEcccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHcccEEEEccccccEEEEEEEcccEEEEEEccccccccccccccccccEEHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHcHHHcccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
msqaqprrpgaddqqqqpikygdffnvsgdlaqkpiapedAAMMQTAEATIMgqtqkggpaAAMQSAAARnegagfvghrdvtdvagdqgvtvtetdvpgrriitesvggqvvgrheeptpvslapttgrveqGAITIGEALETtaqtagdkpvdqsDAAAIQAAEVratgstvttpglaaSAQSAAAhnetvdrdedkIKLNQVLAGATAKLAADKAVTRQDAEGIasaeqrnnpnadthpggVAASVAAAARLNENVNG
Flexible Loop (DISEMBL)
msqaqprrpgaddqqqqpiKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGPAAAMQSAAARNEGAGFVGHRdvtdvagdqgvtvtetdvpgrriitesvggqvvgrheeptpvslapttgrvEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTPGLAASAQSAAAHnetvdrdedkIKLNQVLAGATAKLAADKAVTRQDAEGIASaeqrnnpnadthPGGVAASVAAAARLNENVNG
Low Complexity Region (SEG)
MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGPaaamqsaaaRNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPTPVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTPGLaasaqsaaaHNETVDRDEDKIKLNQvlagataklaadkavtRQDAEGIASAEQRNNPNADTHPGGvaasvaaaaRLNENVNG
Disordered region (IsUnstruct)
*********************GDFFNV************************************************FVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQV*****************************************************************************************************************************************************
Disordered Region (DISOPRED)
*********************GDFFNVSGDLAQKPIAPEDAAMM****************************************VAGDQGVTVTETDVPGRRIITESVGGQVVGRH****************QGAITIGEALETT****************IQ***********TTPGLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNADTHPGGVAASVAAAA*L******
Disordered Region (DISEMBL)
***************QQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIM*******************EGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPTPVSLAPTTGRVEQGAITIGEALETT*************AAAIQAAEVRATGSTVTTPGL***************RDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNADTHPGGVAASVAAAARLNENVNG
Disordered Region (DISPRO)
****************QPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMG***************************DVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPT*************GAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTPGLAASAQS***H******DEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQR***NADTHPGGVAASVAAA*R*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGPAAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPTPVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTPGLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNADTHPGGVAASVAAAARLNENVNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
P09444	264	Late embryogenesis abunda	N/A	no	0.992	0.981	0.742	2e-95

>sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1

 Score =  348 bits (893), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/264 (74%), Positives = 219/264 (82%), Gaps = 5/264 (1%)

Query: 1   MSQAQPRRP---GADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQK 57
           MSQ QPRRP       + Q+PIKYGD FNVSG+LA KPIAP+DAAMMQTAE  ++GQTQK
Sbjct: 1   MSQGQPRRPQQPAGQGENQEPIKYGDVFNVSGELANKPIAPQDAAMMQTAETQVLGQTQK 60

Query: 58  GGPAAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHE 117
           GG AA MQ+AA RNE  G VGH D+TD+AG+QGVT+ ETDV GRRIITE+V GQVVG++ 
Sbjct: 61  GGTAAVMQAAATRNEQVGVVGHNDITDIAGEQGVTLAETDVAGRRIITEAVAGQVVGQYV 120

Query: 118 EPTPVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTP 177
           + TPV +    G V Q AITIGEALE TA+TAGDKPVDQSDAAA+QAAEVRATGS V  P
Sbjct: 121 QATPV-MTSQVGVVLQNAITIGEALEATAKTAGDKPVDQSDAAAVQAAEVRATGSNVIIP 179

Query: 178 -GLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNP 236
            GLAA+AQSAAAHN T+DRDE+KIKLNQVL GATAKL ADKAVTRQDAEG+ SAE RNNP
Sbjct: 180 GGLAATAQSAAAHNATLDRDEEKIKLNQVLTGATAKLPADKAVTRQDAEGVVSAELRNNP 239

Query: 237 NADTHPGGVAASVAAAARLNENVN 260
           N  THPGGVAAS+AAAARLNENVN
Sbjct: 240 NVATHPGGVAASMAAAARLNENVN 263

LEA proteins are late embryonic proteins abundant in higher plant seed embryos. There are two subsets of LEA proteins (5a and 5b), the first ones are expressed when the cotyledon weight reach 80 mg and the second set are expressed above 100 mg. The function of those proteins is not known.
Gossypium hirsutum (taxid: 3635)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
126078	264	RecName: Full=Late embryogenesis abundan	0.992	0.981	0.742	1e-93
77997745	260	seed maturation protein [Medicago trunca	0.977	0.980	0.723	4e-89
225432684	258	PREDICTED: late embryogenesis abundant p	0.980	0.992	0.726	2e-88
147772924	258	hypothetical protein VITISV_037455 [Viti	0.980	0.992	0.723	3e-87
15228768	262	Seed maturation protein [Arabidopsis tha	0.961	0.958	0.678	1e-86
255552169	264	Late embryogenesis abundant protein D-34	0.988	0.977	0.705	7e-85
297835246	262	predicted protein [Arabidopsis lyrata su	0.961	0.958	0.670	2e-84
6648966	253	seed maturation protein PM25 [Glycine ma	0.965	0.996	0.720	2e-82
449444236	264	PREDICTED: late embryogenesis abundant p	0.969	0.958	0.670	4e-82
15228770	256	Seed maturation protein [Arabidopsis tha	0.969	0.988	0.629	6e-78

>gi|126078|sp|P09444.1|LEA34_GOSHI RecName: Full=Late embryogenesis abundant protein D-34; Short=LEA D-34 gi|18501|emb|CAA31594.1| D-34 Lea protein [Gossypium hirsutum] gi|167385|gb|AAA33075.1| storage protein [Gossypium hirsutum] gi|226556|prf||1601521F Lea D-34 gene

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/264 (74%), Positives = 219/264 (82%), Gaps = 5/264 (1%)

Query: 1   MSQAQPRRP---GADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQK 57
           MSQ QPRRP       + Q+PIKYGD FNVSG+LA KPIAP+DAAMMQTAE  ++GQTQK
Sbjct: 1   MSQGQPRRPQQPAGQGENQEPIKYGDVFNVSGELANKPIAPQDAAMMQTAETQVLGQTQK 60

Query: 58  GGPAAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHE 117
           GG AA MQ+AA RNE  G VGH D+TD+AG+QGVT+ ETDV GRRIITE+V GQVVG++ 
Sbjct: 61  GGTAAVMQAAATRNEQVGVVGHNDITDIAGEQGVTLAETDVAGRRIITEAVAGQVVGQYV 120

Query: 118 EPTPVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTP 177
           + TPV +    G V Q AITIGEALE TA+TAGDKPVDQSDAAA+QAAEVRATGS V  P
Sbjct: 121 QATPV-MTSQVGVVLQNAITIGEALEATAKTAGDKPVDQSDAAAVQAAEVRATGSNVIIP 179

Query: 178 -GLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNP 236
            GLAA+AQSAAAHN T+DRDE+KIKLNQVL GATAKL ADKAVTRQDAEG+ SAE RNNP
Sbjct: 180 GGLAATAQSAAAHNATLDRDEEKIKLNQVLTGATAKLPADKAVTRQDAEGVVSAELRNNP 239

Query: 237 NADTHPGGVAASVAAAARLNENVN 260
           N  THPGGVAAS+AAAARLNENVN
Sbjct: 240 NVATHPGGVAASMAAAARLNENVN 263

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77997745|gb|ABB16353.1| seed maturation protein [Medicago truncatula]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 188/260 (72%), Positives = 209/260 (80%), Gaps = 5/260 (1%)

Query: 1   MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGP 60
           MSQ QPRRP A    Q PIKYGD   VSGDL+QKPI PEDAAMMQ+AE+ ++GQTQ GG 
Sbjct: 1   MSQEQPRRPQAG---QDPIKYGDVLPVSGDLSQKPITPEDAAMMQSAESRVLGQTQPGGV 57

Query: 61  AAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPT 120
           A+ MQSAA RNE AG VGH+DVTDV GD+GVTVTET VPGRRIITE+VGGQVVG+  EPT
Sbjct: 58  ASVMQSAATRNEQAGIVGHKDVTDVTGDRGVTVTETQVPGRRIITETVGGQVVGQFVEPT 117

Query: 121 PVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTP-GL 179
           PV +   TG V + A+TIGEALE TA T GDKPV+QSDA+AIQAAEVRATGS V TP GL
Sbjct: 118 PVQVG-LTGAVRESALTIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGSNVITPGGL 176

Query: 180 AASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNAD 239
           A+ AQSAAA N    R+E+KIK+  VL GATAKL ADKA TRQDA G+ASAE RNNP+A 
Sbjct: 177 ASMAQSAAAFNAECQREEEKIKMGNVLTGATAKLPADKAATRQDAAGVASAEMRNNPDAT 236

Query: 240 THPGGVAASVAAAARLNENV 259
             PGGVAASVAAAARLNENV
Sbjct: 237 ATPGGVAASVAAAARLNENV 256

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432684|ref|XP_002282590.1| PREDICTED: late embryogenesis abundant protein D-34 [Vitis vinifera] gi|297737059|emb|CBI26260.3| unnamed protein product [Vitis vinifera]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/260 (72%), Positives = 217/260 (83%), Gaps = 4/260 (1%)

Query: 1   MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGP 60
           MSQ QPRRP +D   Q+PIKYGD F V+G LA KP+AP+DAA+MQ+AE  ++GQTQKGGP
Sbjct: 1   MSQEQPRRPQSD---QEPIKYGDVFPVAGSLADKPVAPQDAALMQSAETAVLGQTQKGGP 57

Query: 61  AAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPT 120
           AA MQSAA RNE AG VGH D+T+ AGD+GVTVTETDVPGRRIITESV GQV+G++ EPT
Sbjct: 58  AATMQSAATRNERAGLVGHTDITNAAGDEGVTVTETDVPGRRIITESVAGQVLGQYVEPT 117

Query: 121 PVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTP-GL 179
           PVS    T    Q AITIGEALE TAQTAG+KPVDQSD+AAIQAAEVRATGST+ +P G+
Sbjct: 118 PVSQMNPTVTARQAAITIGEALEATAQTAGNKPVDQSDSAAIQAAEVRATGSTIISPTGV 177

Query: 180 AASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNAD 239
           AA+AQSAA+ N  + RDEDKIKL  VL+ ATA+L ADKAVTRQDAEG+ SAE RNNPN  
Sbjct: 178 AAAAQSAASMNTGLTRDEDKIKLTDVLSNATARLPADKAVTRQDAEGVMSAEMRNNPNLA 237

Query: 240 THPGGVAASVAAAARLNENV 259
           THPGGVA+SVAAAARLNE+V
Sbjct: 238 THPGGVASSVAAAARLNESV 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772924|emb|CAN67177.1| hypothetical protein VITISV_037455 [Vitis vinifera]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 188/260 (72%), Positives = 215/260 (82%), Gaps = 4/260 (1%)

Query: 1   MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGP 60
           MSQ QP RP +D   Q+PIKYGD F V+G LA KP+AP+DAA+MQ+AE  ++GQTQKGGP
Sbjct: 1   MSQEQPPRPQSD---QEPIKYGDVFPVAGSLADKPVAPQDAALMQSAETAVLGQTQKGGP 57

Query: 61  AAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPT 120
           AA MQSAA RNE AG VGH D+T+ AGD+GVTVTETDVPGRRIITESV GQV+G++ EPT
Sbjct: 58  AATMQSAATRNERAGLVGHTDITNAAGDEGVTVTETDVPGRRIITESVAGQVLGQYVEPT 117

Query: 121 PVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTP-GL 179
           PVS    T    Q AITIGEALE TAQTAG+KPVDQSDAAAIQ AEVRATGST+ +P G+
Sbjct: 118 PVSQMNLTVTARQAAITIGEALEATAQTAGNKPVDQSDAAAIQEAEVRATGSTIISPTGV 177

Query: 180 AASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNAD 239
           AA+AQSAA+ N  + RDEDKIKL  VL+ ATA+L ADKAVTRQDAEG+ SAE RNNPN  
Sbjct: 178 AAAAQSAASMNTGLTRDEDKIKLTDVLSNATARLPADKAVTRQDAEGVMSAEMRNNPNLA 237

Query: 240 THPGGVAASVAAAARLNENV 259
           THPGGVA+SVAAAARLNE+V
Sbjct: 238 THPGGVASSVAAAARLNESV 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228768|ref|NP_188888.1| Seed maturation protein [Arabidopsis thaliana] gi|11994281|dbj|BAB01464.1| seed maturation protein, LEA protein in group 5-like [Arabidopsis thaliana] gi|27754552|gb|AAO22723.1| putative LEA protein [Arabidopsis thaliana] gi|28394023|gb|AAO42419.1| putative LEA protein [Arabidopsis thaliana] gi|332643125|gb|AEE76646.1| Seed maturation protein [Arabidopsis thaliana]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/264 (67%), Positives = 199/264 (75%), Gaps = 13/264 (4%)

Query: 1   MSQA-QPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGG 59
           MSQ  QP+RP      Q+P+ YGD F VSG+LA KPIAPEDA MMQ AE  + G TQKGG
Sbjct: 1   MSQEEQPKRP------QEPVTYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGG 54

Query: 60  PAAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEP 119
            AA MQSAA  N+  GFV   D TD+A ++GVTV +TDVPG R+ TE VGGQVVG++ EP
Sbjct: 55  AAAVMQSAATANKRGGFVHPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYVEP 114

Query: 120 TPVSL-----APTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTV 174
            PV+      A   G   Q AITIGEALE T QTAG+KPVDQSDAAAIQAAEVRA G+ V
Sbjct: 115 RPVATAAAMEAEVVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNV 174

Query: 175 TTP-GLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQR 233
             P G+AASAQSAA HN T+DRDEDKIKL  VLAGAT KLAADKAVTRQDAEG+ SAE R
Sbjct: 175 IAPGGIAASAQSAANHNATIDRDEDKIKLIDVLAGATGKLAADKAVTRQDAEGVVSAELR 234

Query: 234 NNPNADTHPGGVAASVAAAARLNE 257
           NNPN  THPGGVAAS+ AAARLNE
Sbjct: 235 NNPNLSTHPGGVAASITAAARLNE 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552169|ref|XP_002517129.1| Late embryogenesis abundant protein D-34, putative [Ricinus communis] gi|223543764|gb|EEF45292.1| Late embryogenesis abundant protein D-34, putative [Ricinus communis]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 187/265 (70%), Positives = 205/265 (77%), Gaps = 7/265 (2%)

Query: 1   MSQAQPRRP----GADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQ 56
           MSQ QPR+P    G   Q Q P+KYGD FNVSGDLA K IAPEDA MMQ+AE  + G TQ
Sbjct: 1   MSQEQPRKPTEQGGHIGQDQGPVKYGDVFNVSGDLASKTIAPEDANMMQSAETMVFGHTQ 60

Query: 57  KGGPAAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRH 116
           KGG AA MQ+AA RNE AG VGHRD TD A ++GVTVTE+DVPG RI+TE V GQVVG++
Sbjct: 61  KGGAAATMQAAATRNERAGLVGHRDATDAASERGVTVTESDVPGARIVTERVAGQVVGQY 120

Query: 117 EEPTPVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTT 176
            E TPV +  T G V Q AITIGEALE TAQTAG+KPVDQSDAAAIQAAEVRATGS V  
Sbjct: 121 VEATPV-VGMTAGTV-QNAITIGEALEATAQTAGNKPVDQSDAAAIQAAEVRATGSNVII 178

Query: 177 P-GLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNN 235
           P GLAA+AQSAA HN    R+EDKIKL +VL  AT KL ADK VTR DAEG+ SAE RNN
Sbjct: 179 PGGLAATAQSAACHNAAARREEDKIKLTEVLTAATTKLPADKVVTRADAEGVVSAEIRNN 238

Query: 236 PNADTHPGGVAASVAAAARLNENVN 260
           PN  THPGGVAAS+AAAARLNEN N
Sbjct: 239 PNLSTHPGGVAASMAAAARLNENTN 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835246|ref|XP_002885505.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331345|gb|EFH61764.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/264 (67%), Positives = 198/264 (75%), Gaps = 13/264 (4%)

Query: 1   MSQA-QPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGG 59
           MSQ  QP+RP      Q+P+KYGD F VSG+LA KPIAPEDA MMQ AE  + G TQKGG
Sbjct: 1   MSQEDQPKRP------QEPVKYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGG 54

Query: 60  PAAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEP 119
            AA MQSAA  N+  GFV   D TD+A ++GVTV +TDVPG R+ TE VGGQVVG++ EP
Sbjct: 55  AAAVMQSAATANKRGGFVQPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYVEP 114

Query: 120 TP-----VSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTV 174
            P      + A   G   Q AITIGEALE T QTAG+KPVDQSDAAAIQAAEVRA+G+ V
Sbjct: 115 RPVATAAATEAEAVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRASGTNV 174

Query: 175 TTP-GLAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQR 233
             P G+AASAQSAA HN TVDRDEDKIKL  VLAGAT KL ADKAVTRQDAEG+  AE R
Sbjct: 175 IAPGGIAASAQSAANHNATVDRDEDKIKLIDVLAGATGKLTADKAVTRQDAEGVVGAELR 234

Query: 234 NNPNADTHPGGVAASVAAAARLNE 257
           NNPN  THPGGV+AS+ AAARLNE
Sbjct: 235 NNPNLSTHPGGVSASITAAARLNE 258

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6648966|gb|AAF21311.1| seed maturation protein PM25 [Glycine max]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 188/261 (72%), Positives = 208/261 (79%), Gaps = 9/261 (3%)

Query: 1   MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGP 60
           MSQ QPRRP    + Q PIKYGD F VSGDLAQKP+APEDAAMMQ+AEA ++GQTQ GG 
Sbjct: 1   MSQEQPRRP----KGQNPIKYGDVFVVSGDLAQKPVAPEDAAMMQSAEARVLGQTQPGGA 56

Query: 61  AAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPT 120
           A+ MQSAA RNE AG VGHRDVTDV GD+GVTVTET VPGRRIITE+VGGQVV ++ E T
Sbjct: 57  ASVMQSAATRNEQAGLVGHRDVTDVTGDRGVTVTETKVPGRRIITEAVGGQVVEQYVEAT 116

Query: 121 PVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTP-GL 179
           PV  A  +  +++ AITIGEALE TAQT G K VDQSDA+AIQAAEVRATGS V TP GL
Sbjct: 117 PVE-AGRSSAIKENAITIGEALEATAQTVGQKAVDQSDASAIQAAEVRATGSNVITPGGL 175

Query: 180 AASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNAD 239
           AA AQSAAA+N     D+DK+KL   LAGATAKL ADKA T QDAEG+A AE RNNP+A 
Sbjct: 176 AAMAQSAAAYNADCKLDQDKVKL---LAGATAKLPADKAATLQDAEGVACAEVRNNPDAT 232

Query: 240 THPGGVAASVAAAARLNENVN 260
             PGGVAASVAAAARLNENV 
Sbjct: 233 ATPGGVAASVAAAARLNENVK 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444236|ref|XP_004139881.1| PREDICTED: late embryogenesis abundant protein D-34-like [Cucumis sativus] gi|449492634|ref|XP_004159055.1| PREDICTED: late embryogenesis abundant protein D-34-like [Cucumis sativus]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 175/261 (67%), Positives = 194/261 (74%), Gaps = 8/261 (3%)

Query: 1   MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGP 60
           MSQ QPRR     + Q PIKYGD FN++GDLA K I P DA MMQTAE  + G+TQKGGP
Sbjct: 1   MSQEQPRR----QETQDPIKYGDVFNITGDLASKVIPPVDADMMQTAETIVFGRTQKGGP 56

Query: 61  AAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPT 120
           AA MQSAA RNE +GFVGH DV+D A DQGV V ETD+PG RIITE+V GQ+VG+  EPT
Sbjct: 57  AATMQSAATRNELSGFVGHEDVSDAARDQGVAVKETDIPGSRIITETVAGQIVGQFVEPT 116

Query: 121 PVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTP-GL 179
               A     V Q A+TIG+ALE TA TAGDKPVDQSDAAAIQAAEVRATGS V  P GL
Sbjct: 117 SFFGAAA---VMQNAVTIGQALEATAHTAGDKPVDQSDAAAIQAAEVRATGSNVVIPGGL 173

Query: 180 AASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNAD 239
           AASAQSAA+ N  V +DEDKIKLN  L  A  +L ADK VT+QDAEG+ SAE RNNP   
Sbjct: 174 AASAQSAASFNAGVSKDEDKIKLNDTLMDAAMRLPADKVVTKQDAEGVMSAELRNNPRLA 233

Query: 240 THPGGVAASVAAAARLNENVN 260
            HPGGVA S+  AARLNENVN
Sbjct: 234 AHPGGVADSITEAARLNENVN 254

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228770|ref|NP_188889.1| Seed maturation protein [Arabidopsis thaliana] gi|11994283|dbj|BAB01466.1| LEA protein in group 5 [Arabidopsis thaliana] gi|15450431|gb|AAK96509.1| AT3g22500/F16J14_6 [Arabidopsis thaliana] gi|23507757|gb|AAN38682.1| At3g22500/F16J14_6 [Arabidopsis thaliana] gi|332643126|gb|AEE76647.1| Seed maturation protein [Arabidopsis thaliana]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 165/262 (62%), Positives = 191/262 (72%), Gaps = 9/262 (3%)

Query: 1   MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGP 60
           MSQ QPRRP      ++P+KYGD F VSG+LA KPIAPEDA MMQ+AE  + G TQKGGP
Sbjct: 1   MSQEQPRRP------REPVKYGDVFEVSGELADKPIAPEDAKMMQSAETHVFGHTQKGGP 54

Query: 61  AAAMQSAAARNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPT 120
           AA MQSAA  N   GFV   D T++  ++G TV +T VP   + TE VGGQVVG+H EP 
Sbjct: 55  AAVMQSAATTNIRGGFVHPDDKTELVAERGATVEQT-VPAATVTTEFVGGQVVGQHVEPR 113

Query: 121 PV-SLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVT-TPG 178
            V + A T     Q  ITIGEALE T +TAG+KPVDQSDAAAIQAAE+RA+G+ V    G
Sbjct: 114 RVVAAARTDEEALQSTITIGEALEATVKTAGNKPVDQSDAAAIQAAEMRASGTNVIALAG 173

Query: 179 LAASAQSAAAHNETVDRDEDKIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNA 238
           +AASAQSAA HN TVDRDE KIKL  VL GA  KL+AD+AVTR+DAEG+ SAE RNNP  
Sbjct: 174 VAASAQSAADHNATVDRDERKIKLRDVLTGAAGKLSADRAVTREDAEGVVSAEMRNNPKL 233

Query: 239 DTHPGGVAASVAAAARLNENVN 260
            THPGGVAAS+  AARLNE V+
Sbjct: 234 CTHPGGVAASLTVAARLNERVD 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2077081	262	AT3G22490 "AT3G22490" [Arabido	0.973	0.969	0.531	3.2e-65
TAIR|locus:2076996	256	ATECP31 "AT3G22500" [Arabidops	0.969	0.988	0.507	3.9e-60
TAIR|locus:2143789	192	AT5G27980 "AT5G27980" [Arabido	0.666	0.906	0.345	1.1e-21
TAIR|locus:2007529	182	RAB28 "responsive to abscisic	0.590	0.846	0.368	4e-19
TAIR|locus:2154242	176	AT5G53260 "AT5G53260" [Arabido	0.620	0.920	0.272	3.9e-12
TAIR|locus:2154252	159	AT5G53270 "AT5G53270" [Arabido	0.467	0.767	0.276	1.1e-09

TAIR|locus:2077081 AT3G22490 "AT3G22490" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 142/267 (53%), Positives = 162/267 (60%)

Query:     1 MSQA-QPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGG 59
             MSQ  QP+RP      Q+P+ YGD F VSG+LA KPIAPEDA MMQ AE  + G TQKGG
Sbjct:     1 MSQEEQPKRP------QEPVTYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGG 54

Query:    60 PXXXXXXXXXRNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEP 119
                        N+  GFV   D TD+A ++GVTV +TDVPG R+ TE VGGQVVG++ EP
Sbjct:    55 AAAVMQSAATANKRGGFVHPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYVEP 114

Query:   120 TPVSLAPT-----TGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTV 174
              PV+ A        G   Q AITIGEALE T QTAG+KPVDQSDAAAIQAAEVRA G+ V
Sbjct:   115 RPVATAAAMEAEVVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNV 174

Query:   175 TTPG-LXXXXXXXXXHNETVDRDEDKIKLNQXXXXXXXXXXXXXXXXRQDAEGIASAEQR 233
               PG +         HN T+DRDEDKIKL                  RQDAEG+ SAE R
Sbjct:   175 IAPGGIAASAQSAANHNATIDRDEDKIKLIDVLAGATGKLAADKAVTRQDAEGVVSAELR 234

Query:   234 NNPNADTHPGGXXXXXXXXXRLNENVN 260
             NNPN  THPGG         RLNE  +
Sbjct:   235 NNPNLSTHPGGVAASITAAARLNERAD 261

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

TAIR|locus:2076996 ATECP31 "AT3G22500" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 133/262 (50%), Positives = 156/262 (59%)

Query:     1 MSQAQPRRPGADDQQQQPIKYGDFFNVSGDLAQKPIAPEDAAMMQTAEATIMGQTQKGGP 60
             MSQ QPRRP      ++P+KYGD F VSG+LA KPIAPEDA MMQ+AE  + G TQKGGP
Sbjct:     1 MSQEQPRRP------REPVKYGDVFEVSGELADKPIAPEDAKMMQSAETHVFGHTQKGGP 54

Query:    61 XXXXXXXXXRNEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESVGGQVVGRHEEPT 120
                       N   GFV   D T++  ++G TV +T VP   + TE VGGQVVG+H EP 
Sbjct:    55 AAVMQSAATTNIRGGFVHPDDKTELVAERGATVEQT-VPAATVTTEFVGGQVVGQHVEPR 113

Query:   121 PV-SLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTT-PG 178
              V + A T     Q  ITIGEALE T +TAG+KPVDQSDAAAIQAAE+RA+G+ V    G
Sbjct:   114 RVVAAARTDEEALQSTITIGEALEATVKTAGNKPVDQSDAAAIQAAEMRASGTNVIALAG 173

Query:   179 LXXXXXXXXXHNETVDRDEDKIKLNQXXXXXXXXXXXXXXXXRQDAEGIASAEQRNNPNA 238
             +         HN TVDRDE KIKL                  R+DAEG+ SAE RNNP  
Sbjct:   174 VAASAQSAADHNATVDRDERKIKLRDVLTGAAGKLSADRAVTREDAEGVVSAEMRNNPKL 233

Query:   239 DTHPGGXXXXXXXXXRLNENVN 260
              THPGG         RLNE V+
Sbjct:   234 CTHPGGVAASLTVAARLNERVD 255

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2143789 AT5G27980 "AT5G27980" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 64/185 (34%), Positives = 89/185 (48%)

Query:    81 DVTDVAGD-QGVTVTETDVPG-----RRIITESVGGQVVGRHEEPTPVSLAPTTGRVEQG 134
             D  DV G+ + ++ TE  +       + ++ E+ G Q  G   +   V+  P      +G
Sbjct:    11 DCADVKGEAEKISTTEGGIKAAEDKEKGVVAEASGEQAEGEVNQKKVVA-NPLKS---EG 66

Query:   135 AITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTPG-LXXXXXXXXXHNETV 193
              ITIGEALE    TAG+KPV+ SDAAAIQAAEVRATG T   PG +          N  +
Sbjct:    67 TITIGEALEAAVLTAGNKPVEWSDAAAIQAAEVRATGRTNIMPGGVAASAQSAATLNARI 126

Query:   194 DRDEDKIKLNQXXXXXXXXXXXXXXXXRQDAEGIASAEQRNNPNADTHPGGXXXXXXXXX 253
               D+ K  L                  R+DAEG+  AE RN+P+  T+P G         
Sbjct:   127 GSDDTKTTLADVLTGASSKLPSDKAATRKDAEGVTGAEMRNDPHLTTYPTGVAASVAAAA 186

Query:   254 RLNEN 258
             R+N++
Sbjct:   187 RINQS 191

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2007529 RAB28 "responsive to abscisic acid 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 59/160 (36%), Positives = 75/160 (46%)

Query:   104 ITESVGGQVVGRHEEPT---PVSLAPTTGRVEQGAITIGEALETTAQTAGDKPVDQSDAA 160
             I  SV G  V R +  +   P     T G V+   +TIGEALE TA + GDKPVD+ DAA
Sbjct:    25 IVFSVSGDDVARKQGDSFSQPDPTVATMGSVD--TVTIGEALEATALSLGDKPVDRRDAA 82

Query:   161 AIQAAEVRATGSTVTTPG-LXXXXXXXXXHNETVDRDEDKIKLNQXXXXXXXXXXXXXXX 219
             AIQAAE RATG +   PG L          NE    +EDK+ +                 
Sbjct:    83 AIQAAETRATGESKGRPGGLAVAAQAAATTNEQTVSEEDKVNIADILTDAAERLPGDKVV 142

Query:   220 XRQDAEGIASAEQRNNPNADTHPGGXXXXXXXXXRLNENV 259
               +DAE +  AE R++    T PGG         RLN+ +
Sbjct:   143 TSEDAEAVVGAELRSSSEMKTTPGGVADSMSAGARLNQQL 182

GO:0005737 "cytoplasm" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006873 "cellular ion homeostasis" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0010226 "response to lithium ion" evidence=IMP

TAIR|locus:2154242 AT5G53260 "AT5G53260" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 46/169 (27%), Positives = 73/169 (43%)

Query:    92 TVTETDVPGRRIITESV-GGQVVGRHEEPTPVSLAPTTGRVEQGAITIGEALETTAQTAG 150
             +VT   V     +++S  GGQ VG  EE +  + A   GR    + T+ EAL+  +   G
Sbjct:     9 SVTNISVEEHFSVSQSSPGGQFVGPTEEISTAAEA-LIGR----STTLTEALKAASMNVG 63

Query:   151 DKPVDQSDAAAIQAAEVRATGSTVTTPG-LXXXXXXXXXHNETVDRDEDKIKLNQXXXXX 209
              KPV+ +D AAI+  E RA G  + + G +          N+ + +D +K  L       
Sbjct:    64 HKPVETTDVAAIKEVETRAIGGDIESEGGVTAVASKAVARNQKIGKDNEKTNLGDVIAEI 123

Query:   210 XXXXXXXXXXXRQDAEGIASAEQRNNPNADTHPGGXXXXXXXXXRLNEN 258
                         +DAE +  AE  ++P  +  PGG         +LN +
Sbjct:   124 DVKVTRDREVTSEDAEAVIRAELNHSPFNNIIPGGVAESVAAAYKLNHD 172

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2154252 AT5G53270 "AT5G53270" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 34/123 (27%), Positives = 51/123 (41%)

Query:   137 TIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTPG-LXXXXXXXXXHNETVDR 195
             T+ EAL+  A   G KPV+ +D AAI+  E RA G  + + G +          N+ +  
Sbjct:    31 TLTEALKAAAINVGRKPVETTDLAAIKEVEARAIGGDIESDGGVTAVASKAVARNQKIGE 90

Query:   196 DEDKIKLNQXXXXXXXXXXXXXXXXRQDAEGIASAEQRNNPNADTHPGGXXXXXXXXXRL 255
             D +K  L                   +DAE +  AE  ++P  +  PGG         +L
Sbjct:    91 DNEKTNLGDVIAEIDVKVTRDREVTSEDAEAVIRAELNHSPFNNIIPGGVAESVTAAYKL 150

Query:   256 NEN 258
             N N
Sbjct:   151 NCN 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.127   0.355    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      261       218   0.00091  112 3  11 23  0.37    34
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  133 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.59u 0.19s 16.78t   Elapsed:  00:00:01
  Total cpu time:  16.59u 0.19s 16.78t   Elapsed:  00:00:01
  Start:  Sat May 11 04:13:36 2013   End:  Sat May 11 04:13:37 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09444	LEA34_GOSHI	No assigned EC number	0.7424	0.9923	0.9810	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
pfam04927	62	pfam04927, SMP, Seed maturation protein	2e-14
pfam04927	62	pfam04927, SMP, Seed maturation protein	1e-10
pfam04927	62	pfam04927, SMP, Seed maturation protein	4e-09

>gnl|CDD|203123 pfam04927, SMP, Seed maturation protein

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 38/62 (61%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 135 AITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTP-GLAASAQSAAAHNETV 193
            ITIG+ LE TA   GDKPV + DAAA+Q+AE RATG  VT P G+AA+AQSAAA NE  
Sbjct: 1   KITIGDVLEATAGLVGDKPVTREDAAAVQSAEARATGGNVTRPGGVAAAAQSAAALNERA 60

Query: 194 DR 195
             
Sbjct: 61  GS 62

Plant seed maturation protein. Length = 62

>gnl|CDD|203123 pfam04927, SMP, Seed maturation protein

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 31/61 (50%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 199 KIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNADTHPGGVAASVAAAARLNEN 258
           KI +  VL  ATA L  DK VTR+DA  + SAE R      T PGGVAA+  +AA LNE 
Sbjct: 1   KITIGDVL-EATAGLVGDKPVTREDAAAVQSAEARATGGNVTRPGGVAAAAQSAAALNER 59

Query: 259 V 259
            
Sbjct: 60  A 60

Plant seed maturation protein. Length = 62

>gnl|CDD|203123 pfam04927, SMP, Seed maturation protein

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 30/62 (48%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 18 PIKYGDFFN-VSGDLAQKPIAPEDAAMMQTAEATIMG--QTQKGGPAAAMQSAAARNEGA 74
           I  GD     +G +  KP+  EDAA +Q+AEA   G   T+ GG AAA QSAAA NE A
Sbjct: 1  KITIGDVLEATAGLVGDKPVTREDAAAVQSAEARATGGNVTRPGGVAAAAQSAAALNERA 60

Query: 75 GF 76
          G 
Sbjct: 61 GS 62

Plant seed maturation protein. Length = 62

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
PF04927	62	SMP: Seed maturation protein; InterPro: IPR007011	99.78
PF04927	62	SMP: Seed maturation protein; InterPro: IPR007011	99.77

>PF04927 SMP: Seed maturation protein; InterPro: IPR007011 Late embryogenesis abundant (LEA) proteins accumulate to high levels during the last stage of seed formation (when a natural desiccation of the seed tissues takes place) and during periods of water deficit in vegetative organs

Probab=99.78  E-value=3.8e-19  Score=132.15  Aligned_cols=61  Identities=48%  Similarity=0.622  Sum_probs=58.0

Q ss_pred             cchHHHHHhhhhhccccCcccCHhhHHHHHHHHHhcCCCCCCCCCcHHHHHHHHHHhccccC
Q 038380          199 KIKLNQVLAGATAKLAADKAVTRQDAEGIASAEQRNNPNADTHPGGVAASVAAAARLNENVN  260 (261)
Q Consensus       199 kitigdvL~~Atakl~~DK~Vt~eDAaaV~aAE~Ra~g~~~~~PGGVAAa~qaAA~lN~~~~  260 (261)
                      ||||||||+ |+.++++|||||+|||++||+||+|++|...+.||||++++|+||++|++..
T Consensus         1 ~vt~gdvl~-A~a~~~~~kpVt~eDAa~iqsAE~r~~g~~~~~~GGvAa~~qsAA~~N~~~~   61 (62)
T PF04927_consen    1 KVTIGDVLE-AAAGLPGDKPVTPEDAAAIQSAEARATGGAQTQPGGVAAAAQSAADKNERAG   61 (62)
T ss_pred             CccHHHHHH-HHhcccccCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhhcc
Confidence            699999995 9999999999999999999999999999988999999999999999999753

LEA proteins have been grouped into at least six families on the basis of sequence similarity. Although significant similarity has not been detected between the members of the different classes, a unifying and outstanding feature of these proteins is their high hydrophilicity and high percentage of glycines. Amino acid sequence analysis allows one to predict that these proteins exist primarily as random coils. This property has been confirmed in few cases with purified proteins and is supported by the fact that proteins of this type do not coagulate upon heating. LEA protein families have been identified in a wide range of different plant species to the extent that they can be considered ubiquitous in plants. Moreover, it has been shown that members of at least one of the LEA protein families, the so-called dehydrins, are present in a range of photosynthetic organisms, including lower plants, algae, and cyanobacteria. In addition similar proteins, the hydrophilins are induced in a variety of different taxons, of non-photosynthetic organsims, in response to osmotic stress. All of these proteins have a high hydrophilicity index, generally greater than 1.0 []. This conserved region identifies a set of plant seed maturation proteins described as LEA D34.

>PF04927 SMP: Seed maturation protein; InterPro: IPR007011 Late embryogenesis abundant (LEA) proteins accumulate to high levels during the last stage of seed formation (when a natural desiccation of the seed tissues takes place) and during periods of water deficit in vegetative organs

Probab=99.77  E-value=6.8e-19  Score=130.79  Aligned_cols=61  Identities=59%  Similarity=0.785  Sum_probs=56.1

Q ss_pred             cchHHHHHHHHHhhhCCCCCChhHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHhcccCCC
Q 038380          135 AITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRATGSTVTTP-GLAASAQSAAAHNETVDR  195 (261)
Q Consensus       135 ~ItiGealeA~a~~~g~kPV~~sDAAaiQaAE~ratG~~~~~~-G~AA~aQsAA~~N~r~~~  195 (261)
                      +|||||+|++++..+++|||+++||++||+||+|++|.....+ |++++|||||++|++.+|
T Consensus         1 ~vt~gdvl~A~a~~~~~kpVt~eDAa~iqsAE~r~~g~~~~~~GGvAa~~qsAA~~N~~~~~   62 (62)
T PF04927_consen    1 KVTIGDVLEAAAGLPGDKPVTPEDAAAIQSAEARATGGAQTQPGGVAAAAQSAADKNERAGR   62 (62)
T ss_pred             CccHHHHHHHHhcccccCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhhccC
Confidence            5999999999999999999999999999999999999755555 799999999999998764

LEA proteins have been grouped into at least six families on the basis of sequence similarity. Although significant similarity has not been detected between the members of the different classes, a unifying and outstanding feature of these proteins is their high hydrophilicity and high percentage of glycines. Amino acid sequence analysis allows one to predict that these proteins exist primarily as random coils. This property has been confirmed in few cases with purified proteins and is supported by the fact that proteins of this type do not coagulate upon heating. LEA protein families have been identified in a wide range of different plant species to the extent that they can be considered ubiquitous in plants. Moreover, it has been shown that members of at least one of the LEA protein families, the so-called dehydrins, are present in a range of photosynthetic organisms, including lower plants, algae, and cyanobacteria. In addition similar proteins, the hydrophilins are induced in a variety of different taxons, of non-photosynthetic organsims, in response to osmotic stress. All of these proteins have a high hydrophilicity index, generally greater than 1.0 []. This conserved region identifies a set of plant seed maturation proteins described as LEA D34.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
3cgi_A	124	Propanediol utilization protein PDUU; circular per	81.94

>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}

Probab=81.94  E-value=0.81  Score=37.27  Aligned_cols=22  Identities=41%  Similarity=0.421  Sum_probs=19.5

Q ss_pred             ceeEEeeecc-eeeeeeecCCCC
Q 038380          101 RRIITESVGG-QVVGRHEEPTPV  122 (261)
Q Consensus       101 ~RIvTE~VaG-QVvgq~~~p~~~  122 (261)
                      -|||+|||+| ||+..++-|.|.
T Consensus         8 ~r~i~e~V~gkqv~~~~VIan~~   30 (124)
T 3cgi_A            8 DRMIQEYVPGKQVTLAHLIANPG   30 (124)
T ss_dssp             CEEEEEECCCCEEEEEEEESSCC
T ss_pred             eeEEEeeeCCEEEEEeeeeCCCC
Confidence            5999999997 999999988774

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00