Citrus Sinensis ID: 038552

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
Protein Sequence
ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAHNSVDTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGRRV
Secondary Structure (PSIPRED)
ccccccccccEEEccccccEEcccccccccccccEEEccccccEEcccccccccccccccccccccccccccHHHHcccccccEEccccccccccccccccccccccccccccccEEcccHHHHHcccccccEEcccccccccccHHHHHHccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccEEEEcccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHcccccccccccccEEcccccccccccccccccccccccccccccHHHHcccccccEEEcccccccccccHHHHcccccccEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccHHcccccccccccHHHHccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHcccccccEEEEEccccccccccccHccccccEEEEcccccccccccHcHccccccEEEEcccccccccccccccHHHHHHcccccEEEEcccccccccccccHccccccEEEEEcEEccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccHcccEEEcccccccccccccccccccEEEEEcccccccccccccEcccccccccccccHccHHHEEEEEEHHcEEEEccHHHHHHcccccEccccccccccccccccHHHHHHHHccccHHcccccccccEEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccEEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
anlsrysnLIELRVsknklegqipeEIGSLLNLQTLAIDFnyltgqlpdfvgNLSALKVFYIIGNslggkipttLGLLRNLvdlnvgenrfsgmfprsicnisslewiylpfnrfsgslpldiavnlpnlkalaiggnnffgsipnslsnasnleildltsnqlkgkvsidfsslknlswlnleqnnlgmgtandlDFVTFLTNCSSLKVISLYANqfggelphsIANLSStmtdfriganqisgtippgiRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNnslqgsipsslgnltklvelplsynnlqgnipsslgncQILRMFNASRNkltgalphqlLSITTLTLSLDLsnnllngslplqvgnlknlvkldisgnqfsgvipVTLSACVSLeylnisrnffhgiiplslsslksikefnvssnnlsgLIPEFLKNLSFMEFLDLSynhfegevpkkgvfsnktkislqgnvklcggidelhlpscpskgsikpkitLLRVLIPVVVSCLILSSCLTIIYARRRrfahnsvdtspmekqfpmVSYAELSKATsefassnmiegltLHEYAKMALQEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVlcsmespfermDMRDIVAKLCHTRESFLGRRV
Flexible Loop (DISEMBL)
anlsrysnLIELrvsknklegqIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAnqisgtippGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAhnsvdtspmekqFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHtresflgrrv
Low Complexity Region (SEG)
ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGElknlqqlslynnslqgsIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQllsittltlsldlsnnllngslplQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGiiplslsslksikEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAHNSVDTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGRRV
Disordered region (IsUnstruct)
*********IELR*****LEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAH***********************************LTLHEYAKMALQEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTR********
Disordered Region (DISOPRED)
ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDE*******************RVLIPVVVSCLILSSCLTIIY********************PMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGRRV
Disordered Region (DISEMBL)
ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAHNSVDTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGRRV
Disordered Region (DISPRO)
****RYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAHNSVDTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHT*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAHNSVDTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGRRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	659	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.877	0.572	0.404	1e-109
C0LGT6	1031	LRR receptor-like serine/	no	no	0.863	0.551	0.410	1e-104
Q9SD62	1025	Putative receptor-like pr	no	no	0.942	0.605	0.396	2e-96
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.889	0.597	0.335	1e-74
Q9FL28	1173	LRR receptor-like serine/	no	no	0.872	0.490	0.322	3e-71
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.880	0.555	0.286	8e-69
Q9LHP4	1141	Receptor-like protein kin	no	no	0.704	0.406	0.377	2e-68
O49318	1124	Probable leucine-rich rep	no	no	0.763	0.447	0.327	1e-66
Q9LP24	1120	Probable leucine-rich rep	no	no	0.955	0.562	0.284	4e-65
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.711	0.375	0.365	1e-63

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/591 (40%), Positives = 360/591 (60%), Gaps = 13/591 (2%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           S L+ LR+  N+L G +P E+GSL NL  L +  N + G+LP  +GNL+ L+   +  N+
Sbjct: 138 SRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNN 197

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L G+IP+ +  L  +  L +  N FSG+FP ++ N+SSL+ + + +N FSG L  D+ + 
Sbjct: 198 LEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGIL 257

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
           LPNL +  +GGN F GSIP +LSN S LE L +  N L G +   F ++ NL  L L  N
Sbjct: 258 LPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTN 316

Query: 187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246
           +LG  ++ DL+F+T LTNC+ L+ + +  N+ GG+LP SIANLS+ +    +G   ISG+
Sbjct: 317 SLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGS 376

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLV 306
           IP  I NL+NL  L ++ N L G +P ++G+L NL+ LSL++N L G IP+ +GN+T L 
Sbjct: 377 IPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLE 436

Query: 307 ELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG 366
            L LS N  +G +P+SLGNC  L       NKL G +P +++ I  L L LD+S N L G
Sbjct: 437 TLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQL-LRLDMSGNSLIG 495

Query: 367 SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI 426
           SLP  +G L+NL  L +  N+ SG +P TL  C+++E L +  N F+G IP  L  L  +
Sbjct: 496 SLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIP-DLKGLVGV 554

Query: 427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCG 486
           KE ++S+N+LSG IPE+  + S +E+L+LS+N+ EG+VP KG+F N T +S+ GN  LCG
Sbjct: 555 KEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCG 614

Query: 487 GIDELHL-------PSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAHN 539
           GI    L       PS   K S + K  ++ V + + +  L+  + +T+I+ R+R+    
Sbjct: 615 GIMGFQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKE 674

Query: 540 SVDTSP--MEKQFPMVSYAELSKATSEFASSNMIEGLTLHE-YAKMALQEK 587
           + + +P  +E     +SY +L  AT+ F+SSNM+   +    Y  + L EK
Sbjct: 675 TNNPTPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEK 725

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/582 (41%), Positives = 346/582 (59%), Gaps = 13/582 (2%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
           ++LS  S L  + +S N L   +P E+GSL  L  L +  N LTG  P  +GNL++L+  
Sbjct: 139 SSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKL 198

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
               N + G+IP  +  L  +V   +  N FSG FP ++ NISSLE + L  N FSG+L 
Sbjct: 199 DFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLR 258

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            D    LPNL+ L +G N F G+IP +L+N S+LE  D++SN L G + + F  L+NL W
Sbjct: 259 ADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWW 318

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
           L +  N+LG  +++ L+F+  + NC+ L+ + +  N+ GGELP SIANLS+T+T   +G 
Sbjct: 319 LGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQ 378

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
           N ISGTIP  I NLV+L  L++E N L G +P + G+L NLQ + LY+N++ G IPS  G
Sbjct: 379 NLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFG 438

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           N+T+L +L L+ N+  G IP SLG C+ L       N+L G +P ++L I +L   +DLS
Sbjct: 439 NMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAY-IDLS 497

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
           NN L G  P +VG L+ LV L  S N+ SG +P  +  C+S+E+L +  N F G IP  +
Sbjct: 498 NNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIP-DI 556

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
           S L S+K  + S+NNLSG IP +L +L  +  L+LS N FEG VP  GVF N T +S+ G
Sbjct: 557 SRLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFG 616

Query: 481 NVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTII------YARRR 534
           N  +CGG+ E+ L  C  + S + +  L      V   C+ ++S L II      +  +R
Sbjct: 617 NTNICGGVREMQLKPCIVQASPRKRKPLSVRKKVVSGICIGIASLLLIIIVASLCWFMKR 676

Query: 535 RFAHNSVDTSPMEKQ-----FPMVSYAELSKATSEFASSNMI 571
           +  +N+ D +P +          VSY EL  ATS F+S+N+I
Sbjct: 677 KKKNNASDGNPSDSTTLGMFHEKVSYEELHSATSRFSSTNLI 718

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  353 bits (906), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 257/648 (39%), Positives = 383/648 (59%), Gaps = 27/648 (4%)

Query: 17  NKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLG 76
           N LE  +P E GSL  L  L++  N LTG+ P  +GNL++L++   I N + G+IP  + 
Sbjct: 163 NHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIA 222

Query: 77  LLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIG 136
            L+ ++   +  N+F+G+FP  I N+SSL ++ +  N FSG+L  D    LPNL+ L +G
Sbjct: 223 RLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQILYMG 282

Query: 137 GNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDL 196
            N+F G+IP +LSN S+L  LD+ SN L GK+ + F  L+NL  L L  N+LG  ++ DL
Sbjct: 283 INSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDL 342

Query: 197 DFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVN 256
           DF+  LTNCS L+ +++  N+ GG+LP  IANLS+ +T+  +G N ISG+IP GI NLV+
Sbjct: 343 DFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVS 402

Query: 257 LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ 316
           L  L +  N L G +P ++GEL  L+++ LY+N L G IPSSLGN++ L  L L  N+ +
Sbjct: 403 LQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFE 462

Query: 317 GNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLK 376
           G+IPSSLG+C  L   N   NKL G++PH+L+ + +L + L++S NLL G L   +G LK
Sbjct: 463 GSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVV-LNVSFNLLVGPLRQDIGKLK 521

Query: 377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
            L+ LD+S N+ SG IP TL+ C+SLE+L +  N F G IP  +  L  ++  ++S NNL
Sbjct: 522 FLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIP-DIRGLTGLRFLDLSKNNL 580

Query: 437 SGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSC 496
           SG IPE++ N S ++ L+LS N+F+G VP +GVF N + +S+ GN+ LCGGI  L L  C
Sbjct: 581 SGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSLQLQPC 640

Query: 497 ----PSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRR----RFAHNSVDT--SPM 546
               P + S   KI  + V   +    L+    + + + + R    R  +N  D   SP+
Sbjct: 641 SVELPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNENDRSFSPV 700

Query: 547 EKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLMDVIENNSK 606
           +  +  +SY EL K T  F+SSN+I         K  L  K     + ++ + V+  N  
Sbjct: 701 KSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSK-----NKAVAIKVL--NLC 753

Query: 607 IREDRRAKLEEC--LNAI-----IRTGVLCSMESPFERMDMRDIVAKL 647
            R   ++ + EC  L  I     ++   +CS  S FE  D R +V + 
Sbjct: 754 KRGAAKSFIAECEALGGIRHRNLVKLVTICS-SSDFEGNDFRALVYEF 800

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  281 bits (720), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 215/640 (33%), Positives = 328/640 (51%), Gaps = 54/640 (8%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNL-SALKVFYIIGN 65
           + +IEL +S   L G+I   I +L  L  L +  N+  G++P  +G+L   LK   +  N
Sbjct: 66  TQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSEN 125

Query: 66  SLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSI-CN--ISSLEWIYLPFNRFSGSLPLD 122
            L G IP  LGLL  LV L++G NR +G  P  + CN   SSL++I L  N  +G +PL+
Sbjct: 126 LLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLN 185

Query: 123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKV-SIDFSSLKNLSWL 181
              +L  L+ L +  N   G++P+SLSN++NL+ +DL SN L G++ S   S +  L +L
Sbjct: 186 YHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFL 245

Query: 182 NLEQNNLGMGTAN-DLD-FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
            L  N+      N +L+ F   L N S L+ + L  N  GGE+  S+ +LS  +    + 
Sbjct: 246 YLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLD 305

Query: 240 ANQISGTIPPGIR------------------------NLVNLIALTMEINKLHGTIPDTI 275
            N+I G+IPP I                          L  L  + +  N L G IP  +
Sbjct: 306 QNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMEL 365

Query: 276 GELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS 335
           G++  L  L +  N+L GSIP S GNL++L  L L  N+L G +P SLG C  L + + S
Sbjct: 366 GDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLS 425

Query: 336 RNKLTGALPHQLLS-ITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV 394
            N LTG +P +++S +  L L L+LS+N L+G +PL++  +  ++ +D+S N+ SG IP 
Sbjct: 426 HNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPP 485

Query: 395 TLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLD 454
            L +C++LE+LN+SRN F   +P SL  L  +KE +VS N L+G IP   +  S ++ L+
Sbjct: 486 QLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLN 545

Query: 455 LSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSI-KPKITLLRVLI 513
            S+N   G V  KG FS  T  S  G+  LCG I  +   +C  K       + +L  LI
Sbjct: 546 FSFNLLSGNVSDKGSFSKLTIESFLGDSLLCGSIKGMQ--ACKKKHKYPSVLLPVLLSLI 603

Query: 514 PVVVSCLILSSCLTIIYARRRRFAHN-----SVDTSPMEKQ------FPMVSYAELSKAT 562
              V C+           +R RF  N       +    EKQ      +P +SY +L  AT
Sbjct: 604 ATPVLCV-----FGYPLVQRSRFGKNLTVYAKEEVEDEEKQNQNDPKYPRISYQQLIAAT 658

Query: 563 SEFASSNMIEGLTLHEYAKMALQ---EKVMEIIDPSLLMD 599
             F +S++I         K  L+   +  ++++DP   ++
Sbjct: 659 GGFNASSLIGSGRFGHVYKGVLRNNTKVAVKVLDPKTALE 698

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  270 bits (689), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 208/645 (32%), Positives = 324/645 (50%), Gaps = 70/645 (10%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
           A +   S+L++L +  N+L G+IP E+G+L+ LQ L I  N LT  +P  +  L+ L   
Sbjct: 258 AEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHL 317

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            +  N L G I   +G L +L  L +  N F+G FP+SI N+ +L  + + FN  SG LP
Sbjct: 318 GLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELP 377

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            D+ + L NL+ L+   N   G IP+S+SN + L++LDL+ NQ+ G++   F  + NL++
Sbjct: 378 ADLGL-LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRM-NLTF 435

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGEL------------------ 222
           +++ +N+      +D      + NCS+L+ +S+  N   G L                  
Sbjct: 436 ISIGRNHFTGEIPDD------IFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYN 489

Query: 223 ------PHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIG 276
                 P  I NL   +    + +N  +G IP  + NL  L  L M  N L G IP+ + 
Sbjct: 490 SLTGPIPREIGNLKD-LNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMF 548

Query: 277 ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR 336
           ++K L  L L NN   G IP+    L  L  L L  N   G+IP+SL +  +L  F+ S 
Sbjct: 549 DMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISD 608

Query: 337 NKLTGALPHQLL-SITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVT 395
           N LTG +P +LL S+  + L L+ SNNLL G++P ++G L+ + ++D+S N FSG IP +
Sbjct: 609 NLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRS 668

Query: 396 LSAC---VSLEY----------------------LNISRNFFHGIIPLSLSSLKSIKEFN 430
           L AC    +L++                      LN+SRN F G IP S  ++  +   +
Sbjct: 669 LQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLD 728

Query: 431 VSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDE 490
           +SSNNL+G IPE L NLS ++ L L+ N+ +G VP+ GVF N     L GN  LCG    
Sbjct: 729 LSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKP 788

Query: 491 LHLPSCPSKGSIKPKITLLRVLIPVVVS---------CLILSSCLTIIYARRRRFAHNSV 541
           L   +   K S   K T  RV++ ++ S          +++ +C      +    + +S+
Sbjct: 789 LKPCTIKQKSSHFSKRT--RVILIILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSL 846

Query: 542 DTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQE 586
                  +       EL +AT  F S+N+I   +L    K  L++
Sbjct: 847 PDLDSALKLKRFEPKELEQATDSFNSANIIGSSSLSTVYKGQLED 891

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  262 bits (669), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 200/697 (28%), Positives = 313/697 (44%), Gaps = 117/697 (16%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
            S   NL  + +S N+  G I    G    L+   +  N L G++P  +G+LS L   ++
Sbjct: 114 FSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHL 173

Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD 122
           + N L G IP+ +G L  + ++ + +N  +G  P S  N++ L  +YL  N  SGS+P +
Sbjct: 174 VENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSE 233

Query: 123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN 182
           I  NLPNL+ L +  NN  G IP+S  N  N+ +L++  NQL G++  +  ++  L  L+
Sbjct: 234 IG-NLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLS 292

Query: 183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN- 241
           L  N L           + L N  +L V+ LY NQ  G +P  +  + S M D  I  N 
Sbjct: 293 LHTNKLTG------PIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMES-MIDLEISENK 345

Query: 242 -----------------------QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEL 278
                                  Q+SG IPPGI N   L  L ++ N   G +PDTI   
Sbjct: 346 LTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRG 405

Query: 279 KNLQQLSLYNNSLQGSIPSSLGNLTKLVE------------------------LPLSYNN 314
             L+ L+L +N  +G +P SL +   L+                         + LS NN
Sbjct: 406 GKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNN 465

Query: 315 LQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGN 374
             G + ++    Q L  F  S N +TGA+P ++ ++T L+  LDLS+N + G LP  + N
Sbjct: 466 FHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLS-QLDLSSNRITGELPESISN 524

Query: 375 LKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN 434
           +  + KL ++GN+ SG IP  +    +LEYL++S N F   IP +L++L  +   N+S N
Sbjct: 525 INRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRN 584

Query: 435 NLSGLIPEFLKNLSFMEFLDLSYNHFEGE------------------------------- 463
           +L   IPE L  LS ++ LDLSYN  +GE                               
Sbjct: 585 DLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKD 644

Query: 464 -----------------VPKKGVFSNKTKISLQGNVKLCGGIDELH-LPSC---PSKGSI 502
                            +P    F N    + +GN  LCG ++    L  C    SK S 
Sbjct: 645 MLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSH 704

Query: 503 KPKITLLRVLIPVVVSCLILSSC--LTIIYARRRRFAHNSVDTSPMEKQFPM------VS 554
           K +  ++ +L+P++ + +ILS C  + I + +R +      D+    +   +      V 
Sbjct: 705 KDRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVR 764

Query: 555 YAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEI 591
           Y E+ KAT EF    +I      +  K  L   +M +
Sbjct: 765 YQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNAIMAV 801

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  260 bits (665), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 181/479 (37%), Positives = 269/479 (56%), Gaps = 15/479 (3%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNY-LTGQLPDFVGNLSALKVF 60
           ++S+ S L  L +  N L G IP E+G L  L+ + I  N  ++GQ+P  +G+ S L V 
Sbjct: 172 DISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVL 231

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            +   S+ G +P++LG L+ L  L++     SG  P  + N S L  ++L  N  SGS+P
Sbjct: 232 GLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIP 291

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            +I   L  L+ L +  N+  G IP  + N SNL+++DL+ N L G +    SS+  LS+
Sbjct: 292 REIG-QLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIP---SSIGRLSF 347

Query: 181 LN--LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRI 238
           L   +  +N   G+       T ++NCSSL  + L  NQ  G +P  +  L+  +T F  
Sbjct: 348 LEEFMISDNKFSGS-----IPTTISNCSSLVQLQLDKNQISGLIPSELGTLTK-LTLFFA 401

Query: 239 GANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSS 298
            +NQ+ G+IPPG+ +  +L AL +  N L GTIP  +  L+NL +L L +NSL G IP  
Sbjct: 402 WSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQE 461

Query: 299 LGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLD 358
           +GN + LV L L +N + G IPS +G+ + +   + S N+L G +P ++ S + L + +D
Sbjct: 462 IGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQM-ID 520

Query: 359 LSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL 418
           LSNN L GSLP  V +L  L  LD+S NQFSG IP +L   VSL  L +S+N F G IP 
Sbjct: 521 LSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPT 580

Query: 419 SLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEF-LDLSYNHFEGEVPKKGVFSNKTKI 476
           SL     ++  ++ SN LSG IP  L ++  +E  L+LS N   G++P K    NK  I
Sbjct: 581 SLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSI 639

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  254 bits (650), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 181/553 (32%), Positives = 288/553 (52%), Gaps = 50/553 (9%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDF----------- 50
           +L   + L   R  +N   G IP EIG  LNL+ L +  N+++G+LP             
Sbjct: 200 SLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVI 259

Query: 51  -------------VGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPR 97
                        +GNL++L+   + GNSL G IP+ +G +++L  L + +N+ +G  P+
Sbjct: 260 LWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPK 319

Query: 98  SICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEIL 157
            +  +S +  I    N  SG +P++++  +  L+ L +  N   G IPN LS   NL  L
Sbjct: 320 ELGKLSKVMEIDFSENLLSGEIPVELS-KISELRLLYLFQNKLTGIIPNELSKLRNLAKL 378

Query: 158 DLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL------GMGTANDLDFVTFLTN------- 204
           DL+ N L G +   F +L ++  L L  N+L      G+G  + L  V F  N       
Sbjct: 379 DLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIP 438

Query: 205 ---C--SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIA 259
              C  S+L +++L +N+  G +P  +    S +   R+  N+++G  P  +  LVNL A
Sbjct: 439 PFICQQSNLILLNLGSNRIFGNIPPGVLRCKS-LLQLRVVGNRLTGQFPTELCKLVNLSA 497

Query: 260 LTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNI 319
           + ++ N+  G +P  IG  + LQ+L L  N    ++P+ +  L+ LV   +S N+L G I
Sbjct: 498 IELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPI 557

Query: 320 PSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLV 379
           PS + NC++L+  + SRN   G+LP +L S+  L + L LS N  +G++P  +GNL +L 
Sbjct: 558 PSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEI-LRLSENRFSGNIPFTIGNLTHLT 616

Query: 380 KLDISGNQFSGVIPVTLSACVSLEY-LNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSG 438
           +L + GN FSG IP  L    SL+  +N+S N F G IP  + +L  +   ++++N+LSG
Sbjct: 617 ELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSG 676

Query: 439 LIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPS 498
            IP   +NLS +   + SYN+  G++P   +F N T  S  GN  LCGG    HL SC  
Sbjct: 677 EIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG----HLRSCDP 732

Query: 499 KGSIKPKITLLRV 511
             S  P I+ L+ 
Sbjct: 733 SHSSWPHISSLKA 745

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  249 bits (637), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 223/785 (28%), Positives = 355/785 (45%), Gaps = 155/785 (19%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
           + L    ++ +L +S+NKL G IP  +G+L NL  L +  NYLTG +P  +GN+ ++   
Sbjct: 168 SELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDL 227

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            +  N L G IP+TLG L+NL+ L + EN  +G+ P  I N+ S+  + L  N+ +GS+P
Sbjct: 228 ALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIP 287

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
             +  NL NL  L++  N   G IP  L N  ++  L+L++N+L G +     +LKNL+ 
Sbjct: 288 SSLG-NLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTI 346

Query: 181 LNLEQNNL---------GMGTANDLDF----------VTF-------------------- 201
           L L +N L          M +  DL             +F                    
Sbjct: 347 LYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVI 406

Query: 202 ---LTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLI 258
              L N  S+  + L  N+  G +P S  N +  +    +  N +SG IPPG+ N  +L 
Sbjct: 407 PQELGNMESMINLDLSQNKLTGSVPDSFGNFTK-LESLYLRVNHLSGAIPPGVANSSHLT 465

Query: 259 ALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVE----------- 307
            L ++ N   G  P+T+ + + LQ +SL  N L+G IP SL +   L+            
Sbjct: 466 TLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGD 525

Query: 308 -------------LPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLT 354
                        +  S+N   G I S+      L     S N +TGA+P ++ ++T L 
Sbjct: 526 IFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQL- 584

Query: 355 LSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYL--------- 405
           + LDLS N L G LP  +GNL NL +L ++GNQ SG +P  LS   +LE L         
Sbjct: 585 VELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSS 644

Query: 406 ---------------NISRNFFHGIIPL-----------------------SLSSLKSIK 427
                          N+SRN F G IP                         LSSL+S+ 
Sbjct: 645 EIPQTFDSFLKLHDMNLSRNKFDGSIPRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLD 704

Query: 428 EFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGG 487
           + ++S NNLSGLIP   + +  +  +D+S N  EG +P    F   T  +L+ N+ LC  
Sbjct: 705 KLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSN 764

Query: 488 IDELHLPSCPSKGSIKPKIT---LLRVLIPVVVSCLILSSCL-TIIYARRRRFAHNSVDT 543
           I +  L  C  +   KPK     ++ +L+P++   +ILS C  T  Y  R+R   N  +T
Sbjct: 765 IPKQRLKPC--RELKKPKKNGNLVVWILVPILGVLVILSICANTFTYCIRKRKLQNGRNT 822

Query: 544 SP----------MEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIID 593
            P          ++ +F    Y ++ ++T+EF  +++I      +  +  LQ+ ++ +  
Sbjct: 823 DPETGENMSIFSVDGKF---KYQDIIESTNEFDPTHLIGTGGYSKVYRANLQDTIIAV-- 877

Query: 594 PSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVA--KLC-HT 650
              L D I+             EE    +++   L  +++    +  R++V     C H 
Sbjct: 878 -KRLHDTID-------------EEISKPVVKQEFLNEVKA-LTEIRHRNVVKLFGFCSHR 922

Query: 651 RESFL 655
           R +FL
Sbjct: 923 RHTFL 927

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  245 bits (625), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 186/509 (36%), Positives = 258/509 (50%), Gaps = 40/509 (7%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
           A L   S+L     ++N L G IP E+G L NL+ L +  N LTG++P  +G +S L+  
Sbjct: 209 AELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYL 268

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            ++ N L G IP +L  L NL  L++  N  +G  P    N+S L  + L  N  SGSLP
Sbjct: 269 SLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLP 328

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKV------------ 168
             I  N  NL+ L + G    G IP  LS   +L+ LDL++N L G +            
Sbjct: 329 KSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTD 388

Query: 169 ------------SIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN 216
                       S   S+L NL WL L  NNL      ++  +        L+V+ LY N
Sbjct: 389 LYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISAL------RKLEVLFLYEN 442

Query: 217 QFGGELPHSIANLSS-TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTI 275
           +F GE+P  I N +S  M D  +  N   G IPP I  L  L  L +  N+L G +P ++
Sbjct: 443 RFSGEIPQEIGNCTSLKMID--MFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASL 500

Query: 276 GELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS 335
           G    L  L L +N L GSIPSS G L  L +L L  N+LQGN+P SL + + L   N S
Sbjct: 501 GNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLS 560

Query: 336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVT 395
            N+L G + H L   ++  LS D++NN     +PL++GN +NL +L +  NQ +G IP T
Sbjct: 561 HNRLNGTI-HPLCGSSSY-LSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWT 618

Query: 396 LSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDL 455
           L     L  L++S N   G IPL L   K +   ++++N LSG IP +L  LS +  L L
Sbjct: 619 LGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKL 678

Query: 456 SYNHFEGEVPKKGVFSNKTK---ISLQGN 481
           S N F   +P +    N TK   +SL GN
Sbjct: 679 SSNQFVESLPTE--LFNCTKLLVLSLDGN 705

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	659
357484501	1006	Kinase-like protein [Medicago truncatula	0.861	0.564	0.472	1e-131
359482058	1040	PREDICTED: probable LRR receptor-like se	0.861	0.546	0.473	1e-129
147853780	1904	hypothetical protein VITISV_030954 [Viti	0.861	0.298	0.472	1e-128
357484467	1030	Kinase-like protein [Medicago truncatula	0.863	0.552	0.453	1e-127
255553269	2793	receptor-kinase, putative [Ricinus commu	0.861	0.203	0.457	1e-127
357484195	1032	Receptor kinase-like protein [Medicago t	0.889	0.567	0.458	1e-126
357497603	1027	CCP [Medicago truncatula] gi|355494105|g	0.861	0.553	0.464	1e-126
224119022	1021	predicted protein [Populus trichocarpa]	0.928	0.599	0.438	1e-125
255577438	1028	receptor-kinase, putative [Ricinus commu	0.861	0.552	0.449	1e-125
224115346	1017	predicted protein [Populus trichocarpa]	0.922	0.597	0.447	1e-124

>gi|357484501|ref|XP_003612538.1| Kinase-like protein [Medicago truncatula] gi|355513873|gb|AES95496.1| Kinase-like protein [Medicago truncatula]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/574 (47%), Positives = 372/574 (64%), Gaps = 6/574 (1%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
           +NL+  SNL  L V  N + G+IP EIGSL  LQ + +  N LTG  P F+GNLS+L   
Sbjct: 126 SNLTYCSNLKGLNVGGNNVIGKIPIEIGSLKKLQLINVWGNNLTGGFPSFIGNLSSLIGI 185

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            +  N+L G+IP  +  L+N+  L+VGEN  SGMFP  + NISSL  + L  N+F GSLP
Sbjct: 186 AVTYNNLKGEIPQEICNLKNIRRLHVGENNLSGMFPSCLYNISSLTQLSLTENKFIGSLP 245

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            ++   LPNL    IG N FFGS+P S+ NAS+L++LDL  N L G+V      L++L W
Sbjct: 246 SNLFNTLPNLNMFQIGKNQFFGSMPISIVNASSLQLLDLAQNYLVGQVP-SLEKLQDLYW 304

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
           LNLE N  G  +  DL+F+ +LTNCS L+V+S+  N+FGG LP+SI +LS+ +T+  +G 
Sbjct: 305 LNLEDNYFGNNSTIDLEFLKYLTNCSKLEVVSICNNKFGGSLPNSIGSLSTQLTELCLGG 364

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
           N ISG IP  I NLV LI L ++ N   G IP + G+ + +Q L+L  N L G IP  +G
Sbjct: 365 NLISGKIPVEIGNLVELILLAIDFNHFEGIIPTSFGKFQKMQYLALSGNKLSGYIPPFIG 424

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           NL++L +L L  N  QGNIP S+ NCQ L+  + S NKL+G +P ++  I +L+  L+LS
Sbjct: 425 NLSQLFKLDLYRNMFQGNIPPSIENCQKLQYLDLSHNKLSGTIPSEIFHIFSLSNLLNLS 484

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
           +N L+GSLP +VG LKN+  LD+S N  SG IP T+  C +LEYL++  N F+G IP SL
Sbjct: 485 HNFLSGSLPREVGLLKNIDWLDVSENHLSGDIPTTIGDCTALEYLHLQGNSFNGTIPSSL 544

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
           +SL+ ++  ++S N LSG IP+ ++N+S +E+L++S+N  EGEVPK GVF N TK+ L G
Sbjct: 545 ASLEGLQHLDLSRNRLSGSIPDVMQNISVLEYLNVSFNMLEGEVPKNGVFGNVTKVELIG 604

Query: 481 NVKLCGGIDELHLPSCPSKG---SIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFA 537
           N KLCGGI  LHLP CP KG   +   K  L+ V++ VV   LILS  +TI + R+R   
Sbjct: 605 NNKLCGGILLLHLPPCPIKGRKDTKHHKFMLVAVIVSVVFFLLILSFIITIYWVRKRN-N 663

Query: 538 HNSVDTSPMEKQFPMVSYAELSKATSEFASSNMI 571
             S+D SP   Q   VSY +L   T+ F+S N+I
Sbjct: 664 KRSID-SPTIDQLATVSYQDLHHGTNGFSSRNLI 696

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 273/576 (47%), Positives = 367/576 (63%), Gaps = 8/576 (1%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
           ANLSR SNL+  R+  N L G+IP  +GS   +  + + +N LTG +PD +GNL+++K  
Sbjct: 147 ANLSRCSNLVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSL 206

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
               N L G IP  LG L+ L  + +G N FSG+ P S+ N+SSLE   LP+N+  GSLP
Sbjct: 207 SFAVNHLEGSIPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLP 266

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            D+A  LPNL+ L IG N+F GS+P+SLSNASNL   D+T +   GKVSIDF  + NL  
Sbjct: 267 WDLAFTLPNLQVLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWG 326

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
           L L  N LG G A+DL F+  L  C +LKV+ L  +QFGG LP+SIANLS+ +   ++  
Sbjct: 327 LFLASNPLGKGEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDN 386

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
           NQ+SGTIPPGI NLVNL  L +  N   G+IP  IG L+ L ++ L  N L G IPSSLG
Sbjct: 387 NQLSGTIPPGIGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLG 446

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           N+T+L  L L  N+L G IPSS GN   L+  + S N L G +P +++ + +LT+SL+L+
Sbjct: 447 NITRLYSLHLQNNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLA 506

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
            N L G LP +V  LKNL  LD+S N+ SG IP  L +C++LE+L++  NFF G IP S 
Sbjct: 507 RNQLTGLLPSEVRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSF 566

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
            SL+ + + ++S NNLSG IPEFL+ LS +  L+LS+N+FEG++P KGVF+N T  S+ G
Sbjct: 567 ISLRGLLDLDLSRNNLSGQIPEFLQQLS-LSNLNLSFNNFEGQLPTKGVFNNATSTSVAG 625

Query: 481 NVKLCGGIDELHLPSC----PSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRF 536
           N KLCGGI ELHLP+C    P  G  K  + L+  L+   +  +++ S L I   R RR 
Sbjct: 626 NNKLCGGIPELHLPACPVTKPKTGESKRGLKLMIGLLTGFLGLVLIMSLLVI--NRLRRV 683

Query: 537 AHNSVDTSPMEKQFPM-VSYAELSKATSEFASSNMI 571
                 TS   K   + VSY  L KAT  F+S+N+I
Sbjct: 684 KREPSQTSASSKDLILNVSYDGLFKATGGFSSANLI 719

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 272/576 (47%), Positives = 366/576 (63%), Gaps = 8/576 (1%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
           ANLSR SNL+  R+  N L G+IP  +GS   +  + + +N LTG +PD +GNL+++K  
Sbjct: 178 ANLSRCSNLVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSL 237

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
               N L G IP  LG L+ L  + +G N FSG+ P S+ N+SSLE   LP+N+  GSLP
Sbjct: 238 SFAVNHLEGSIPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLP 297

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            D+A  LPNL+ L IG N+F G +P+SLSNASNL   D+T +   GKVSIDF  + NL  
Sbjct: 298 WDLAFTLPNLQVLNIGNNDFTGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWG 357

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
           L L  N LG G A+DL F+  L  C +LKV+ L  +QFGG LP+SIANLS+ +   ++  
Sbjct: 358 LFLASNPLGKGEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDN 417

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
           NQ+SGTIPPGI NLVNL  L +  N   G+IP  IG L+ L ++ L  N L G IPSSLG
Sbjct: 418 NQLSGTIPPGIGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLG 477

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           N+T+L  L L  N+L G IPSS GN   L+  + S N L G +P +++ + +LT+SL+L+
Sbjct: 478 NITRLYSLHLQNNHLSGKIPSSFGNLLYLQELDLSYNSLNGTIPEKVMDLVSLTISLNLA 537

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
            N L G LP +V  LKNL  LD+S N+ SG IP  L +C++LE+L++  NFF G IP S 
Sbjct: 538 RNQLTGLLPSEVRKLKNLGHLDVSENKLSGEIPDGLGSCLTLEHLHMEGNFFKGSIPPSF 597

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
            SL+ + + ++S NNLSG IPEFL+ LS +  L+LS+N+FEG++P KGVF+N T  S+ G
Sbjct: 598 ISLRGLLDLDLSRNNLSGQIPEFLQQLS-LSNLNLSFNNFEGQLPTKGVFNNATSTSVAG 656

Query: 481 NVKLCGGIDELHLPSC----PSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRF 536
           N KLCGGI ELHLP+C    P  G  K  + L+  L+   +  +++ S L I   R RR 
Sbjct: 657 NNKLCGGIPELHLPACPVTKPKTGESKRGLKLMIGLLTGFLGLVLIMSLLVI--NRLRRV 714

Query: 537 AHNSVDTSPMEKQFPM-VSYAELSKATSEFASSNMI 571
                 TS   K   + VSY  L KAT  F+S+N+I
Sbjct: 715 KREPSQTSASSKDLILNVSYDGLFKATGGFSSANLI 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484467|ref|XP_003612521.1| Kinase-like protein [Medicago truncatula] gi|355513856|gb|AES95479.1| Kinase-like protein [Medicago truncatula]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/573 (45%), Positives = 368/573 (64%), Gaps = 4/573 (0%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
            NL+  SNL ELR+  N L G+IP EIGSL  LQ + I  N LTG +P FVGNLS L  F
Sbjct: 125 TNLTHCSNLKELRLGGNNLIGKIPIEIGSLKKLQYVTIWKNKLTGGIPSFVGNLSCLTRF 184

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            +  N+L G IP     L+NL  L +G N  SGM P  + NIS+L  + L  NRF+GSLP
Sbjct: 185 SVTSNNLEGDIPQETCRLKNLRGLFMGVNYLSGMIPSCLYNISALTELSLTMNRFNGSLP 244

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            ++   LPNLK+   GGN F G IP S++NAS+L+I+DL  N L G+V      L +L W
Sbjct: 245 PNMFYTLPNLKSFEPGGNQFSGPIPVSIANASSLQIIDLGQNNLVGQVP-SLEKLPDLYW 303

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
           L+LE N  G  +  DL+F+ +LTNCS L+ +S+  N+FGG LP+ I NLS+ +    +G 
Sbjct: 304 LSLEYNYFGNNSTIDLEFLKYLTNCSKLEKLSISNNKFGGSLPNFIGNLSTHLRQLYLGG 363

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
           N I+G IP  I NLV L  L+ME+N+  G +P T+G+ +N+Q L L  N L G IP  +G
Sbjct: 364 NMITGKIPMEIGNLVGLTLLSMELNQFDGIVPSTLGKFQNMQILDLSENKLSGYIPPFIG 423

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           NL++L  L +  N  QGNIP S+GNCQ L+  + S NKL+G++P ++ ++  L+  L+LS
Sbjct: 424 NLSQLFRLAVHSNMFQGNIPPSIGNCQKLQYLDLSHNKLSGSIPLEIFNLFYLSNLLNLS 483

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
           +N L+GSLP +VG LKN+  LD+S NQ S  +P T+  C+SLEYL +  N F+G IP SL
Sbjct: 484 HNSLSGSLPREVGMLKNINMLDVSENQLSSYLPRTVGECISLEYLLLQGNSFNGTIPSSL 543

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
           +SLK ++  ++S+N LSG IP+ ++++S +E L++S+N  EGEVP  GVF N +K+++ G
Sbjct: 544 ASLKGLRYLDLSTNQLSGSIPDVMQDISCLEHLNVSFNMLEGEVPTNGVFRNASKVAMIG 603

Query: 481 NVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVV--VSCLILSSCLTIIYARRRRFAH 538
           N KLCGGI +LHL  CP KG   PK  + R++  +V  VS L++   +  IY  R+    
Sbjct: 604 NNKLCGGISQLHLAPCPIKGRKHPKHHIFRLIAVIVSMVSFLLIFLFIITIYWVRKINQK 663

Query: 539 NSVDTSPMEKQFPMVSYAELSKATSEFASSNMI 571
            S D+ P +++   VS+ +L + T  F+  N+I
Sbjct: 664 RSFDSPPNDQE-AKVSFRDLYQGTDGFSDRNLI 695

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/582 (45%), Positives = 368/582 (63%), Gaps = 14/582 (2%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           NL+R S L  + +  N L G+IP E+GSLL L+ L++  N LTG++P  +GNLS+L +F 
Sbjct: 268 NLTRCSQLRVIGLLGNNLSGKIPAELGSLLKLEVLSLSMNKLTGEIPASLGNLSSLTIFQ 327

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
              NSL G IP  +G L +L    VG N+ SG+ P SI N SS+  +    N+ + SLP 
Sbjct: 328 ATYNSLVGNIPQEMGRLTSLTVFGVGANQLSGIIPPSIFNFSSVTRLLFTQNQLNASLPD 387

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
           +I  +LPNL    IG NN FGSIPNSL NAS LEI+DL  N   G+V I+  SLKNL  +
Sbjct: 388 NI--HLPNLTFFGIGDNNLFGSIPNSLFNASRLEIIDLGWNYFNGQVPINIGSLKNLWRI 445

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
            L  NNLG  +++DL F+T L NC+ L+++    N FGG LP+S+ANLS+ ++ F  G N
Sbjct: 446 RLHGNNLGSNSSSDLAFLTSLNNCTKLRILDFGRNNFGGVLPNSVANLSTELSLFYFGRN 505

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
           QI G IP G+ NL+NL+ L M  N   G +P   G+ + LQ L L+ N L G IPSSLGN
Sbjct: 506 QIRGIIPAGLENLINLVGLVMHYNLFTGVVPSYFGKFQKLQVLDLFGNRLSGRIPSSLGN 565

Query: 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361
           LT L  L LS N  +G+IPSS+GN + L     S NKLTGA+PH++L +T+L+ +LDLS 
Sbjct: 566 LTGLSMLYLSRNLFEGSIPSSIGNLKNLNTLAISHNKLTGAIPHEILGLTSLSQALDLSQ 625

Query: 362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421
           N L G+LP ++G L +L  L ISGN  SG IP ++  C+SLEYL +  NFF G IP SL+
Sbjct: 626 NSLTGNLPPEIGKLTSLTALFISGNNLSGEIPGSIGNCLSLEYLYMKDNFFQGTIPSSLA 685

Query: 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
           SLK ++  ++S N L+G IPE L+++ +++ L+LS+N  EGEVP +GVF N + +SL GN
Sbjct: 686 SLKGLQYVDLSGNILTGPIPEGLQSMQYLKSLNLSFNDLEGEVPTEGVFRNLSALSLTGN 745

Query: 482 VKLCGGIDELHLPSCPSKGSIKPKITL-LRVLIPVVVSCLILSSCLTIIYARR------- 533
            KLCGG+ ELHLP CP K   +  + L L ++IP    C++L     + Y++R       
Sbjct: 746 SKLCGGVPELHLPKCPKKVKKEHSLMLKLAIIIPCAALCVVLILAFLLQYSKRKSDKKSS 805

Query: 534 ----RRFAHNSVDTSPMEKQFPMVSYAELSKATSEFASSNMI 571
                 F  +S  +  + +    +SY +L +AT+ FAS N+I
Sbjct: 806 SSIMNYFKRSSSSSLMINRILLKLSYRDLCRATNGFASENLI 847

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484195|ref|XP_003612385.1| Receptor kinase-like protein [Medicago truncatula] gi|355513720|gb|AES95343.1| Receptor kinase-like protein [Medicago truncatula]

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 273/596 (45%), Positives = 372/596 (62%), Gaps = 10/596 (1%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           NL+  SNL  L +  N L G+IP EIGSL  L  + I  N LTG +  F+GNLS+L  F 
Sbjct: 157 NLTSCSNLKVLHLFGNNLTGKIPAEIGSLQKLIIVNIGKNNLTGGISPFIGNLSSLISFG 216

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           ++ N+L G IP  +  L+NL+ + V +N+ SG FP  + N+SSL  I    N FSGSLP 
Sbjct: 217 VVYNNLEGDIPREICRLKNLIIITVTDNKLSGTFPPCLYNMSSLTLISTADNHFSGSLPS 276

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
           ++   LPNL++  IGGN   GSIP S+ NAS L   D++ N   G+V      L++L+ L
Sbjct: 277 NMFQTLPNLRSFEIGGNKILGSIPTSIVNASTLTSFDISGNHFVGQVP-SLGKLQDLNLL 335

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
           NLE N LG  +  DL F+  +TNCS+L+V+SL AN FGG LP+S+ NLS  +++  +G N
Sbjct: 336 NLEMNILGDNSTKDLGFLKTMTNCSNLQVLSLAANNFGGCLPNSVGNLSFQLSELYLGGN 395

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
           +ISG IP  + NLVNL  L+M  N   G IP   G+ +++Q+L L  N L G IP  +GN
Sbjct: 396 EISGKIPEELGNLVNLTLLSMGHNHFEGIIPANFGKFQSMQRLDLRQNKLSGDIPYFIGN 455

Query: 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361
           L++L +L +  N L+GNIP S+G CQ+L+  N S+N L GA+P ++ SI +LT  LDLS 
Sbjct: 456 LSQLFDLHMEENMLEGNIPLSIGECQMLQYLNLSQNNLQGAIPLEIFSIFSLTTGLDLSQ 515

Query: 362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421
           N L+GSLP +VG LKN+ KLD+S N  SG IP+T+  C+SLEYL++  N  HG IP +L+
Sbjct: 516 NSLSGSLPDEVGLLKNIHKLDVSENHLSGDIPITIGECISLEYLHLQGNSLHGTIPSTLA 575

Query: 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
           SLK ++  ++S N LSG IPE L+N+ F+E+ + S+N  EGEVP  GVF N + +S+ GN
Sbjct: 576 SLKVLQYLDMSRNQLSGSIPEGLQNIVFLEYFNASFNMLEGEVPINGVFKNASGLSVTGN 635

Query: 482 VKLCGGIDELHLPSCPSKGSIKP----KITLLRVLIPVVVSCLILSSCLTIIYARRRRFA 537
            KLCGGI ELHL  CP    IKP       L+ VLI V+   LIL   L I+Y  R+R  
Sbjct: 636 NKLCGGILELHLSPCPVN-FIKPTQHHNFRLIAVLISVISFLLILMFIL-IMYCVRKRNR 693

Query: 538 HNSVDTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAK--MALQEKVMEI 591
            +S DT   +     VSY EL   T EF+  N+I   +     K  +  Q+KV+ I
Sbjct: 694 KSSSDTGTTD-HLTKVSYQELHHGTDEFSDRNLIGSGSFGTVYKGNIVSQDKVVAI 748

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497603|ref|XP_003619090.1| CCP [Medicago truncatula] gi|355494105|gb|AES75308.1| CCP [Medicago truncatula]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 267/575 (46%), Positives = 365/575 (63%), Gaps = 7/575 (1%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
            NL+  SNL  L ++ N L G+IP EIGSL  LQ +++  N+LT  +P F+GNLS L   
Sbjct: 150 TNLTYCSNLKLLYLNGNHLNGKIPIEIGSLKKLQAISVGNNHLTEGIPSFIGNLSCLTRL 209

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            +  N+  GKIP  +  L++L  L V EN  SG  P  + NISSL  + +  N   GS P
Sbjct: 210 NLGENNFSGKIPQEICFLKHLTILGVSENNLSGKIPSCLYNISSLISLTVTQNHLHGSFP 269

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ-LKGKVSIDFSSLKNLS 179
            ++   LPN++  A   N F G IP S++NAS L+ILDL +N  L G+V     +L++LS
Sbjct: 270 PNMFHTLPNIQIFAFAANQFSGPIPTSIANASALQILDLGNNMNLVGQVP-SLRNLQDLS 328

Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
           +L+LE NNLG  +  DL+F+ +LTNCS L V+S+  N FGG LP+SI NLS+ + +  +G
Sbjct: 329 FLSLEVNNLGNNSTMDLEFLKYLTNCSKLYVLSISYNNFGGHLPNSIGNLSTELPELYMG 388

Query: 240 ANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL 299
            N ISG IP  +  LV LI LTME N   G IP   G+ + +Q LSL  N L G IP  +
Sbjct: 389 GNMISGKIPAELGRLVGLILLTMESNCFEGIIPTNFGKFQKMQVLSLRENKLSGGIPPFI 448

Query: 300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDL 359
           GNL++L  L L++N  QG+IP S+GNCQ L+  + S NKL G +P ++L++ +L++ L+L
Sbjct: 449 GNLSQLYYLELNHNMFQGSIPPSIGNCQNLQSLDLSHNKLRGTIPVEVLNLFSLSILLNL 508

Query: 360 SNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLS 419
           S+N L+GSLP +VG LKN+  LD+S N  SG IP  +  C SLEY+++ RN F+G IP S
Sbjct: 509 SHNSLSGSLPREVGMLKNIEALDVSENHLSGDIPREIGECTSLEYIHLQRNSFNGTIPSS 568

Query: 420 LSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQ 479
           L+ LK ++  ++S N LSG IP+ ++N+S +E+L++S+N  EGEVP  GVF N T+I L 
Sbjct: 569 LTFLKGLRYLDLSRNQLSGSIPDGMQNISVLEYLNVSFNMLEGEVPTNGVFGNATQIDLI 628

Query: 480 GNVKLCGGIDELHLPSCPSKG---SIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRF 536
           GN KLCGGI  LHLP CP KG   + + K  L+ VL+ VV   LILS  +T IY  R+R 
Sbjct: 629 GNKKLCGGISHLHLPPCPIKGRKHAKQHKFRLIAVLVSVVSFILILSFIIT-IYMMRKRN 687

Query: 537 AHNSVDTSPMEKQFPMVSYAELSKATSEFASSNMI 571
              S D SP   Q   VSY EL   T  F++ NMI
Sbjct: 688 QKRSFD-SPTIDQLAKVSYQELHVGTDGFSNRNMI 721

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119022|ref|XP_002331306.1| predicted protein [Populus trichocarpa] gi|222873889|gb|EEF11020.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 277/631 (43%), Positives = 392/631 (62%), Gaps = 19/631 (3%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
           +S  SNLI +++  N L G+IP E+GSLL L+ L ++ N LTG +P  +GNLS+L++  +
Sbjct: 139 ISDCSNLISIKIEFNNLTGEIPMELGSLLKLKNLTLEVNGLTGTIPPSLGNLSSLEILRL 198

Query: 63  IGNS-LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
             N  L G +P+TLG L+NL  LN+ +NR SG+ P SI N+SSL  + + FN F G+LP 
Sbjct: 199 EKNKILFGNVPSTLGKLKNLRILNLMDNRLSGVIPPSIFNLSSLTALDIGFNLFHGNLPS 258

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
           DI ++LPNL+  +I  N F GSIP S+SNASN+E+L ++ N L G+V      L  L++ 
Sbjct: 259 DIGISLPNLEFFSIASNQFTGSIPVSISNASNIELLQVSLNNLTGEVPT-LEKLHRLNFF 317

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
            L  N+LG G ANDL F++ LTN ++L+ +S+  N FGGELP  I+NLS+ +    +  N
Sbjct: 318 TLFSNHLGSGQANDLSFLSSLTNATTLEYLSIKRNNFGGELPKQISNLSTMLGVISLPEN 377

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
            I G+IP GI  LVNL    +  NK+ G IP +IGEL+NL+ L L  N+L G IPSS+GN
Sbjct: 378 NILGSIPAGIEKLVNLKVFDVGNNKISGIIPSSIGELQNLEGLVLDYNNLSGRIPSSVGN 437

Query: 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361
           LTKL+ L L  N+L+G+IPSSLGNC+ L +     N L+G +P  L  I +L L +  S 
Sbjct: 438 LTKLMALYLGDNSLEGSIPSSLGNCKKLLVLTLCGNNLSGDIPPGLFGIFSL-LYICFSK 496

Query: 362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421
           N  +GSLP+++G L NL  LD+SGN  SG IP +L  C+SLE L ++ NFFHG IP +LS
Sbjct: 497 NHFSGSLPIEIGKLINLEFLDVSGNMLSGEIPSSLGGCISLEDLYMNSNFFHGSIPSALS 556

Query: 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
           SL+ + +FN S NNLSG IPEF +  + +E LDLSYN+FEG +P +G+F N T +S+ GN
Sbjct: 557 SLRGVLQFNFSHNNLSGKIPEFFQGFNSLEMLDLSYNNFEGMIPDEGIFKNSTAVSVIGN 616

Query: 482 VKLCGGIDELHLPSC----PSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFA 537
            +LCGG  EL LP C    P +  +K KI +    I V+++  ++ +CL +  +RR+R  
Sbjct: 617 SQLCGGNTELGLPRCKVHQPKRLKLKLKIAIFA--ITVLLALALVVTCLFLCSSRRKR-- 672

Query: 538 HNSVDTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAK-------MALQEKVME 590
              +  S M  +   VSY  L KAT+ F+SSN++   +     K       M +  KV+ 
Sbjct: 673 -REIKLSSMRNELLEVSYQILLKATNGFSSSNLVGIGSFGSVYKGMLDQNGMVIAVKVLN 731

Query: 591 IIDPSLLMDVIENNSKIREDRRAKLEECLNA 621
           ++        I     +R  R   L + L A
Sbjct: 732 LMRQGASRSFIAECEALRNIRHRNLVKVLTA 762

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/576 (44%), Positives = 370/576 (64%), Gaps = 8/576 (1%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
            N+S  SNL+ LR+ +N L G++P E+ SL  LQ    + NYLTG++     NLS+L++ 
Sbjct: 142 VNISYCSNLLTLRLGRNNLTGKLPAELKSLSKLQMFEFEINYLTGEISPSFSNLSSLEII 201

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
           Y   N+  G+IP ++G L++L   ++G + FSG+ P SI N+SSL  + +P N+  G+LP
Sbjct: 202 YGTRNNFHGEIPNSIGQLKSLQTFSLGGSNFSGVIPPSIFNLSSLTILSVPINQLHGNLP 261

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            D+  +LP L+ L +  N F GSIP ++SNASNL  LD++ N   GKV    + L NLS+
Sbjct: 262 PDLGQSLPKLEVLRLYANKFSGSIPPTISNASNLVALDVSQNNFTGKVP-SLARLHNLSY 320

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
           + + +NNLG G  +DL F+  L N ++L+++++  N  GG LP  ++N S+ +     G 
Sbjct: 321 IGIHKNNLGNGEDDDLSFLYTLANNTNLEILAITENNLGGVLPEMLSNFSTKLVHMAFGR 380

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
           N+I G IP  I NL+ L AL  E N+L G+IP ++G+LKNL +L L +N++ GSIPSSLG
Sbjct: 381 NKIRGRIPSEIDNLIRLEALGFERNELTGSIPSSLGKLKNLIKLYLNDNNISGSIPSSLG 440

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           N+T L  + L  NNL+G+IPSSLGNCQ + + + SRN L+G +P +L+SI +L++SLDLS
Sbjct: 441 NITSLSTISLKVNNLEGSIPSSLGNCQQMLLMDLSRNNLSGTIPKELISIPSLSISLDLS 500

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
            N   GSLP++VG L NL  LD+S N+ SG IP +L +C  LE L +  N F G IP+SL
Sbjct: 501 ENQFTGSLPMEVGGLVNLGYLDVSKNKLSGEIPKSLGSCTRLETLYLQGNAFQGTIPVSL 560

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
           SSL+ I + N+S NNL+G IP F      +E LDLSYN FEGEVP +GVF N +  S+ G
Sbjct: 561 SSLRGINDLNLSHNNLTGQIPNFFAEFKSLEKLDLSYNDFEGEVPAEGVFKNASAFSISG 620

Query: 481 NVKLCGGIDELHLPSCPSKGSIKPKITL-LRVLI----PVVVSCLILSSCLTIIYARRRR 535
           N  LCGGI E++LP C    S+KPK +  LR++I      VV  L+L+S L     + R+
Sbjct: 621 NKNLCGGIPEINLPRCTLNKSMKPKTSHKLRLIIVVACCGVVGVLLLTSALLFCCLKMRK 680

Query: 536 FAHNSVDTSPMEKQFPMVSYAELSKATSEFASSNMI 571
             +     S ++  F  VSY  L KAT  F+S+N+I
Sbjct: 681 --NKEASGSSLDIFFQKVSYQNLLKATDGFSSANLI 714

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 278/621 (44%), Positives = 390/621 (62%), Gaps = 13/621 (2%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
            NLS  S L  L ++ N L G+IP E+ SL  L+ L I  N L+G +P F+GNL++L   
Sbjct: 146 GNLSHCSKLDYLGLASNNLVGKIPAELVSLSKLEKLVIHKNNLSGAIPPFIGNLTSLNSI 205

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
               N+  G+IP TLG L+NL  L +G N  SG  P  I N+S+L  + L  N+  G LP
Sbjct: 206 SAAANNFQGRIPDTLGQLKNLESLGLGTNFLSGTIPLPIYNLSTLSILSLSENQLQGYLP 265

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            DI V+LPNL+ + I  N F GSIP S+SN+SNL++L+   N   GK+S++F  LK+L+ 
Sbjct: 266 SDIGVSLPNLQYIQIRANQFSGSIPLSISNSSNLQVLEAGDNSFSGKLSVNFGGLKHLAV 325

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
           ++L  N +G G   +L F+  L NC+SL  I +  N F G LP+S+ NLS+ +T   +G 
Sbjct: 326 VSLSFNKMGSGEPGELSFLDSLINCTSLYAIDIVGNHFEGMLPNSLGNLSTGLTFLGLGQ 385

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
           NQ+ G I  GI NL+NL  L +E N+L G IP  IG+L+ LQ+ SL  N L G IPSS+G
Sbjct: 386 NQLFGGIHSGIGNLINLNTLGLEFNQLSGPIPLDIGKLRMLQRFSLSYNRLSGHIPSSIG 445

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           NLT L+E  L  N LQG IPSS+GNCQ L + + SRN L+G  P +L +I++L++SLDLS
Sbjct: 446 NLTLLLEFDLQGNQLQGTIPSSIGNCQKLLLLHLSRNNLSGNAPKELFAISSLSVSLDLS 505

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
            N  NGSLP ++G+LK+L KL++S N+FSG IP TL++C SLEYL +  NFF G IP S 
Sbjct: 506 QNYFNGSLPSEIGSLKSLAKLNVSYNEFSGEIPSTLASCTSLEYLYMQHNFFQGSIPSSF 565

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
           S+L+ I++ ++S NNLSG IP+FL   + +  L+LS+N FEGEVP KG F N T IS+ G
Sbjct: 566 STLRGIQKLDLSHNNLSGQIPKFLDTFALLT-LNLSFNDFEGEVPTKGAFGNATAISVDG 624

Query: 481 NVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCL---TIIYARRRRFA 537
           N KLCGGI EL LP C  K S K KI L  +L+ + ++C  L   +    ++Y  RR+  
Sbjct: 625 NKKLCGGISELKLPKCNFKKSKKWKIPLWLILL-LTIACGFLGVAVVSFVLLYLSRRKRK 683

Query: 538 HNSVDTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLL 597
             S + S +++  P VSY  L KAT+ F+S N+I      E    ++   +++  D  + 
Sbjct: 684 EQSSELS-LKEPLPKVSYEMLLKATNGFSSDNLIG-----EGGFGSVYRGILDQDDTVVA 737

Query: 598 MDVIENNSKIREDRRAKLEEC 618
           + V+  N + R   ++ + EC
Sbjct: 738 IKVL--NLQTRGASKSFVAEC 756

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	659
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.877	0.572	0.363	1.5e-102
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.954	0.613	0.374	2.8e-98
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.863	0.562	0.353	1.8e-97
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.883	0.576	0.359	3.7e-97
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.930	0.598	0.340	1.3e-96
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.861	0.550	0.375	2e-96
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.861	0.698	0.350	2e-88
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.834	0.489	0.299	1.1e-63
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.874	0.491	0.302	1.7e-62
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.742	0.498	0.326	1.9e-62

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 933 (333.5 bits), Expect = 1.5e-102, Sum P(2) = 1.5e-102
 Identities = 215/591 (36%), Positives = 328/591 (55%)

Query:     7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
             S L+ LR+  N+L G +P E+GSL NL  L +  N + G+LP  +GNL+ L+   +  N+
Sbjct:   138 SRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNN 197

Query:    67 LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
             L G+IP+ +  L  +  L +  N FSG+FP ++ N+SSL+ + + +N FSG L  D+ + 
Sbjct:   198 LEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGIL 257

Query:   127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
             LPNL +  +GGN F GSIP +LSN S LE L +  N L G +   F ++ NL  L L  N
Sbjct:   258 LPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTN 316

Query:   187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246
             +LG  ++ DL+F+T LTNC+ L+ + +  N+ GG+LP SIANLS+ +    +G   ISG+
Sbjct:   317 SLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGS 376

Query:   247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLGNLTKLV 306
             IP  I NL+NL  L ++ N L G +P ++G+                 IP+ +GN+T L 
Sbjct:   377 IPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLE 436

Query:   307 ELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXXXXXXXXX 366
              L LS N  +G +P+SLGNC  L       NKL G +P +                    
Sbjct:   437 TLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGS 496

Query:   367 XXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGXXXXXXXXXXXX 426
                  +G L+NL  L +  N+ SG +P TL  C+++E L +  N F+G            
Sbjct:   497 LPQ-DIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKGLVGVK 555

Query:   427 XEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCG 486
              E ++S+N+LSG IPE+  + S +E+L+LS+N+ EG+VP KG+F N T +S+ GN  LCG
Sbjct:   556 -EVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCG 614

Query:   487 GIDELHLPSC----PS---KGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAHN 539
             GI    L  C    PS   K S + K  ++ V + + +  L+  + +T+I+ R+R+    
Sbjct:   615 GIMGFQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKE 674

Query:   540 SVDTSP--MEKQFPMVSYAELSKATSEFASSNMI-EGLTLHEYAKMALQEK 587
             + + +P  +E     +SY +L  AT+ F+SSNM+  G     Y  + L EK
Sbjct:   675 TNNPTPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEK 725

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 248/662 (37%), Positives = 364/662 (54%)

Query:     3 LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
             LS  S+L  L +S N LE  +P E GSL  L  L++  N LTG+ P  +GNL++L++   
Sbjct:   149 LSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDF 208

Query:    63 IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD 122
             I N + G+IP  +  L+ ++   +  N+F+G+FP  I N+SSL ++ +  N FSG+L  D
Sbjct:   209 IYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPD 268

Query:   123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN 182
                 LPNL+ L +G N+F G+IP +LSN S+L  LD+ SN L GK+ + F  L+NL  L 
Sbjct:   269 FGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLG 328

Query:   183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ 242
             L  N+LG  ++ DLDF+  LTNCS L+ +++  N+ GG+LP  IANLS+ +T+  +G N 
Sbjct:   329 LNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNL 388

Query:   243 ISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLGNL 302
             ISG+IP GI NLV+L  L +  N L G +P ++GE                 IPSSLGN+
Sbjct:   389 ISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNI 448

Query:   303 TKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXXXXX 362
             + L  L L  N+ +G+IPSSLG+C  L   N   NKL G++PH+                
Sbjct:   449 SGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNL 508

Query:   363 XXXXXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGXXXXXXXX 422
                      +G LK L+ LD+S N+ SG IP TL+ C+SLE+L +  N F G        
Sbjct:   509 LVGPLRQ-DIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRGL 567

Query:   423 XXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNV 482
                    ++S NNLSG IPE++ N S ++ L+LS N+F+G VP +GVF N + +S+ GN+
Sbjct:   568 TGLRF-LDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNI 626

Query:   483 KLCGGIDELHLPSC----PSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIY-------A 531
              LCGGI  L L  C    P + S   KI  + + +  V++ L+L  CL ++Y        
Sbjct:   627 NLCGGIPSLQLQPCSVELPRRHSSVRKI--ITICVSAVMAALLLL-CLCVVYLCWYKLRV 683

Query:   532 RRRRFAHNSVDTS--PMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVM 589
             +  R  +N  D S  P++  +  +SY EL K T  F+SSN+I         K  L  K  
Sbjct:   684 KSVRANNNENDRSFSPVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSK-- 741

Query:   590 EIIDPSLLMDVIENNSKIREDRRAKLEEC--LNAI-----IRTGVLCSMESPFERMDMRD 642
                + ++ + V+ N  K R   ++ + EC  L  I     ++   +CS  S FE  D R 
Sbjct:   742 ---NKAVAIKVL-NLCK-RGAAKSFIAECEALGGIRHRNLVKLVTICS-SSDFEGNDFRA 795

Query:   643 IV 644
             +V
Sbjct:   796 LV 797

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
 Identities = 205/580 (35%), Positives = 313/580 (53%)

Query:     1 ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
             A LS  S L+ L +  N L   +P E+GSL  L  L +  N L G+LP  +GNL++LK  
Sbjct:   132 ATLSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSL 191

Query:    61 YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
                 N++ G++P  L  L  +V L +  N+F G+FP +I N+S+LE ++L  + FSGSL 
Sbjct:   192 GFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLK 251

Query:   121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
              D    LPN++ L +G N+  G+IP +LSN S L+   +  N + G +  +F  + +L +
Sbjct:   252 PDFGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQY 311

Query:   181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
             L+L +N LG  T  DL+F+  LTNC+ L+++S+   + GG LP SIAN+S+ +    +  
Sbjct:   312 LDLSENPLGSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIG 371

Query:   241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLG 300
             N   G+IP  I NL+ L  L +  N L G +P ++G+                 IPS +G
Sbjct:   372 NHFFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIG 431

Query:   301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXXX 360
             NLT+L  L LS N+ +G +P SLG C  +       NKL G +P +              
Sbjct:   432 NLTQLEILYLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEG 491

Query:   361 XXXXXXXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGXXXXXX 420
                        +G+L+NLVKL +  N+FSG +P TL  C+++E L +  N F G      
Sbjct:   492 NSLSGSLPN-DIGSLQNLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPNIR 550

Query:   421 XXXXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
                      ++S+N+LSG IPE+  N S +E+L+LS N+F G+VP KG F N T + + G
Sbjct:   551 GLMGVR-RVDLSNNDLSGSIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFG 609

Query:   481 NVKLCGGIDELHLPSC-----P--SKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARR 533
             N  LCGGI +L L  C     P  +K S   K   + V I + +  L++ + + + + R+
Sbjct:   610 NKNLCGGIKDLKLKPCLAQEPPVETKHSSHLKKVAILVSIGIALLLLLVIASMVLCWFRK 669

Query:   534 RRFAH--NSVDTSPMEKQFPMVSYAELSKATSEFASSNMI 571
             RR     N++  S +E     +SY +L  AT+ F+SSNM+
Sbjct:   670 RRKNQQTNNLVPSKLEIFHEKISYGDLRNATNGFSSSNMV 709

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
 Identities = 213/593 (35%), Positives = 319/593 (53%)

Query:     1 ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
             A+LS  S L+ L +  N L   +P E+GSL  L  L +  N L G+ P F+ NL++L V 
Sbjct:   132 ASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVL 191

Query:    61 YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
              +  N L G+IP  + +L  +V L +  N FSG+FP +  N+SSLE +YL  N FSG+L 
Sbjct:   192 NLGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLK 251

Query:   121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
              D    LPN+  L++ GN   G+IP +L+N S LE+  +  N++ G +S +F  L+NL +
Sbjct:   252 PDFGNLLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHY 311

Query:   181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
             L L  N+LG  +  DL F+  LTNCS L  +S+  N+ GG LP SI N+S+ +T   +  
Sbjct:   312 LELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKG 371

Query:   241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLG 300
             N I G+IP  I NL+ L +L +  N L G +P ++G                  IPS +G
Sbjct:   372 NLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIG 431

Query:   301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXXX 360
             NLT+LV+L LS N+ +G +P SLG+C  +       NKL G +P +              
Sbjct:   432 NLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTLVHLNMES 491

Query:   361 XXXXXXXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGXXXXXX 420
                        +G L+NLV+L +  N  SG +P TL  C+S+E + +  N F G      
Sbjct:   492 NSLSGSLPN-DIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPDIK 550

Query:   421 XXXXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
                      ++S+NNLSG I E+ +N S +E+L+LS N+FEG VP +G+F N T +S+ G
Sbjct:   551 GLMGVK-NVDLSNNNLSGSISEYFENFSKLEYLNLSDNNFEGRVPTEGIFQNATLVSVFG 609

Query:   481 NVKLCGGIDELHLPSC----PSKGSIKPKITLLRVLIPVVV--SCLILSSCLTIIYARRR 534
             N  LCG I EL L  C    P   +  P + L +V I V V  + L+L   +++ + ++R
Sbjct:   610 NKNLCGSIKELKLKPCIAQAPPVETRHPSL-LKKVAIGVSVGIALLLLLFIVSLSWFKKR 668

Query:   535 RFAHNSVDTSP--MEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQ 585
             +      +++P  +E     +SY +L  AT  F+SSN++   +     K  LQ
Sbjct:   669 KNNQKINNSAPFTLEIFHEKLSYGDLRNATDGFSSSNIVGSGSFGTVFKALLQ 721

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 875 (313.1 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
 Identities = 212/622 (34%), Positives = 324/622 (52%)

Query:     1 ANLSRYSNLIELRVSKNKLEGQIPEEIG-SLLNLQTLAIDFNYLTGQLPDFVGNLSALKV 59
             A +   + L  L +S N+L G IP EIG SL +L  L +  N L+G++P  +GNL++L+ 
Sbjct:   145 AAIGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQE 204

Query:    60 FYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSL 119
             F +  N L G IP++LG L +L+ +N+G+N  SGM P SI N+SSL    +  N+  G +
Sbjct:   205 FDLSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMI 264

Query:   120 PLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLS 179
             P +    L  L+ + +G N F G IP S++NAS+L ++ +  N   G ++  F  L+NL+
Sbjct:   265 PTNAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLT 324

Query:   180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
              L L +N       +D  F++ LTNCS L+ ++L  N  GG LP+S +NLS++++   + 
Sbjct:   325 ELYLWRNLFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALE 384

Query:   240 ANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSL 299
              N+I+G+IP  I NL+ L  L +  N   G++P ++G                  IP ++
Sbjct:   385 LNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAI 444

Query:   300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXX 359
             GNLT+L  L L  N   G IP +L N   L     S N L+G +P +             
Sbjct:   445 GNLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINV 504

Query:   360 XXXXXXXXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGXXXXX 419
                        ++G+LKNLV+     N+ SG IP TL  C  L YL +  N   G     
Sbjct:   505 SKNNLEGSIPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSA 564

Query:   420 XXXXXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQ 479
                       ++SSNNLSG IP  L +++ +  L+LS+N F GEVP  G F+  + IS+Q
Sbjct:   565 LGQLKGLETLDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQ 624

Query:   480 GNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRRFAHN 539
             GN KLCGGI +LHLP C      +    +L + + +  +  ILSS L ++    +R    
Sbjct:   625 GNAKLCGGIPDLHLPRCCPLLENRKHFPVLPISVSLAAALAILSS-LYLLITWHKRTKKG 683

Query:   540 SVDTSPMEKQFPMVSYAELSKATSEFASSNMI-EGLTLHEY-AKMALQE----KVMEIID 593
             +   + M K  P+VSY++L KAT  FA +N++  G     Y  K+ +Q+    KV+++ +
Sbjct:   684 APSRTSM-KGHPLVSYSQLVKATDGFAPTNLLGSGSFGSVYKGKLNIQDHVAVKVLKLEN 742

Query:   594 PSLLMDVIENNSKIREDRRAKL 615
             P  L         +R  R   L
Sbjct:   743 PKALKSFTAECEALRNMRHRNL 764

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
 Identities = 219/583 (37%), Positives = 315/583 (54%)

Query:     1 ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
             ++LS  S L  + +S N L   +P E+GSL  L  L +  N LTG  P  +GNL++L+  
Sbjct:   139 SSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKL 198

Query:    61 YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
                 N + G+IP  +  L  +V   +  N FSG FP ++ NISSLE + L  N FSG+L 
Sbjct:   199 DFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLR 258

Query:   121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
              D    LPNL+ L +G N F G+IP +L+N S+LE  D++SN L G + + F  L+NL W
Sbjct:   259 ADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWW 318

Query:   181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
             L +  N+LG  +++ L+F+  + NC+ L+ + +  N+ GGELP SIANLS+T+T   +G 
Sbjct:   319 LGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQ 378

Query:   241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLG 300
             N ISGTIP  I NLV+L  L++E N L G +P + G+                 IPS  G
Sbjct:   379 NLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFG 438

Query:   301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXXX 360
             N+T+L +L L+ N+  G IP SLG C+ L       N+L G +P Q              
Sbjct:   439 NMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIP-QEILQIPSLAYIDLS 497

Query:   361 XXXXXXXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGXXXXXX 420
                       +VG L+ LV L  S N+ SG +P  +  C+S+E+L +  N F G      
Sbjct:   498 NNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPDIS 557

Query:   421 XXXXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
                      + S+NNLSG IP +L +L  +  L+LS N FEG VP  GVF N T +S+ G
Sbjct:   558 RLVSLK-NVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFG 616

Query:   481 NVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVS-CLILSSCLTII------YARR 533
             N  +CGG+ E+ L  C  + S + K   L V   VV   C+ ++S L II      +  +
Sbjct:   617 NTNICGGVREMQLKPCIVQASPR-KRKPLSVRKKVVSGICIGIASLLLIIIVASLCWFMK 675

Query:   534 RRFAHNSVDTSPMEK----QF-PMVSYAELSKATSEFASSNMI 571
             R+  +N+ D +P +      F   VSY EL  ATS F+S+N+I
Sbjct:   676 RKKKNNASDGNPSDSTTLGMFHEKVSYEELHSATSRFSSTNLI 718

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 200/570 (35%), Positives = 303/570 (53%)

Query:     3 LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
             LSR S L +L ++ N L G+IP  +G+L +L  L +  N L+G +P  +G L+ L    +
Sbjct:   122 LSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLAL 181

Query:    63 IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD 122
               N+L G IP++ G LR L  L++  N  SG  P  I NISSL    +  N+ SG+LP +
Sbjct:   182 AENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTN 241

Query:   123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN 182
                NLP+L+ + +  N F G IP S+ NASN+ I  +  N   G V  +   ++NL  L 
Sbjct:   242 AFSNLPSLQEVYMYYNQFHGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLE 301

Query:   183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ 242
             L +        ND  F+T LTNCS+L+ + L   +FGG LP S++NLSS++    I  N+
Sbjct:   302 LPETLSEAEETNDWKFMTALTNCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNK 361

Query:   243 ISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLGNL 302
             ISG++P  I NLVNL  L++  N L G++P +  +                 +P ++GNL
Sbjct:   362 ISGSLPRDIGNLVNLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNL 421

Query:   303 TKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXXXXX 362
             T+L  + + +N   G IPS+LGN   L   N   N   G +P +                
Sbjct:   422 TQLTNMEVQFNAFGGTIPSTLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHN 481

Query:   363 XXXXXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGXXXXXXXX 422
                     ++G LKN+V+     N+ SG  P T+  C  L++L +  NF +G        
Sbjct:   482 NLEGSIPKEIGKLKNIVEFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQ 541

Query:   423 XXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNV 482
                    ++S NNLSG IP  L ++  +  L+LS+N F GEVP  GVF+N ++I +QGN 
Sbjct:   542 LKGLDTLDLSGNNLSGQIPMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNA 601

Query:   483 KLCGGIDELHLPSCPSKGSIKPKITLLRVLIPV-VVSCLILSSCLTIIYARRRRFAHNSV 541
              +CGGI ELHLP+C  K   K K  +L +++ + +VS L + S L ++    +R      
Sbjct:   602 HICGGIPELHLPTCSLKSRKKKKHQILLLVVVICLVSTLAVFSLLYMLLTCHKRRKKEVP 661

Query:   542 DTSPMEKQFPMVSYAELSKATSEFASSNMI 571
              T+ M+   PM++Y +L KAT  F+SS+++
Sbjct:   662 ATTSMQGH-PMITYKQLVKATDGFSSSHLL 690

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 1.1e-63, Sum P(2) = 1.1e-63
 Identities = 172/574 (29%), Positives = 276/574 (48%)

Query:     9 LIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLG 68
             L E+ + +NK  G IP++IG+L +L+TLA+  N L G +P  +GN+ +LK  Y+  N L 
Sbjct:   255 LQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLN 314

Query:    69 GKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLP 128
             G IP  LG L  +++++  EN  SG  P  +  IS L  +YL  N+ +G +P +++  L 
Sbjct:   315 GTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELS-KLR 373

Query:   129 NLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL 188
             NL  L +  N+  G IP    N +++  L L  N L G +         L  ++  +N L
Sbjct:   374 NLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQL 433

Query:   189 GMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIP 248
               G         F+   S+L +++L +N+  G +P  +    S +   R+  N+++G  P
Sbjct:   434 S-GK-----IPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLL-QLRVVGNRLTGQFP 486

Query:   249 PGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLGNLTKLVEL 308
               +  LVNL A+ ++ N+  G +P  IG                  +P+ +  L+ LV  
Sbjct:   487 TELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTF 546

Query:   309 PLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXXXXXXXXXXX 368
              +S N+L G IPS + NC++L+  + SRN   G+LP +                      
Sbjct:   547 NVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIP 606

Query:   369 XXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEY-LNISRNFFHGXXXXXXXXXXXXX 427
                +GNL +L +L + GN FSG IP  L    SL+  +N+S N F G             
Sbjct:   607 FT-IGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLM 665

Query:   428 EFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGG 487
               ++++N+LSG IP   +NLS +   + SYN+  G++P   +F N T  S  GN  LCGG
Sbjct:   666 YLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGG 725

Query:   488 IDELHLPSCPSKGSIKPKITLLRV------LIPVVVSCLILSSCLTIIYARRRRFAHNSV 541
                 HL SC    S  P I+ L+        I ++VS +I    L +I A    F  N V
Sbjct:   726 ----HLRSCDPSHSSWPHISSLKAGSARRGRIIIIVSSVIGGISLLLI-AIVVHFLRNPV 780

Query:   542 D-TSP-MEKQFPMVSYAELSKATSE-FASSNMIE 572
             + T+P +  + P    +++     E F   +++E
Sbjct:   781 EPTAPYVHDKEPFFQESDIYFVPKERFTVKDILE 814

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.7e-62, Sum P(2) = 1.7e-62
 Identities = 180/596 (30%), Positives = 283/596 (47%)

Query:     1 ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
             ++L R + L  L +S+N L G I EEIG L +L+ L +  N  TG+ P  + NL  L V 
Sbjct:   306 SSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVL 365

Query:    61 YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
              +  N++ G++P  LGLL NL +L+  +N  +G  P SI N + L+ + L  N+ +G +P
Sbjct:   366 TVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIP 425

Query:   121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
                     NL  ++IG N+F G IP+ + N SNLE L +  N L G +      L+ L  
Sbjct:   426 RGFG--RMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRI 483

Query:   181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
             L +  N+L      ++       N   L ++ L++N F G +P  ++NL+  +   R+ +
Sbjct:   484 LQVSYNSLTGPIPREIG------NLKDLNILYLHSNGFTGRIPREMSNLT-LLQGLRMYS 536

Query:   241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLG 300
             N + G IP  + ++  L  L +  NK  G IP    +                 IP+SL 
Sbjct:   537 NDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLK 596

Query:   301 NLTKLVELPLSYNNLQGNIPSSL-GNCQILRMF-NASRNKLTGALPHQXXXXXXXXXXXX 358
             +L+ L    +S N L G IP  L  + + ++++ N S N LTG +P +            
Sbjct:   597 SLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDL 656

Query:   359 XXXXXXXXXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEY-LNISRNFFHGXXX 417
                          +   KN+  LD S N  SG IP  +   + +   LN+SRN F G   
Sbjct:   657 SNNLFSGSIPRS-LQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIP 715

Query:   418 XXXXXXXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKIS 477
                         ++SSNNL+G IPE L NLS ++ L L+ N+ +G VP+ GVF N     
Sbjct:   716 QSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASD 775

Query:   478 LQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYA---RRR 534
             L GN  LCG    L   +   K S   K T + ++I    + L+L   L +I     ++ 
Sbjct:   776 LMGNTDLCGSKKPLKPCTIKQKSSHFSKRTRVILIILGSAAALLLVLLLVLILTCCKKKE 835

Query:   535 RFAHNSVDTS-P-MEKQFPMVSYA--ELSKATSEFASSNMIEGLTLHEYAKMALQE 586
             +   NS ++S P ++    +  +   EL +AT  F S+N+I   +L    K  L++
Sbjct:   836 KKIENSSESSLPDLDSALKLKRFEPKELEQATDSFNSANIIGSSSLSTVYKGQLED 891

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 1.9e-62, Sum P(2) = 1.9e-62
 Identities = 164/503 (32%), Positives = 242/503 (48%)

Query:     7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNL-SALKVFYIIGN 65
             + +IEL +S   L G+I   I +L  L  L +  N+  G++P  +G+L   LK   +  N
Sbjct:    66 TQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSEN 125

Query:    66 SLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSI-CN--ISSLEWIYLPFNRFSGSLPLD 122
              L G IP  LGLL  LV L++G NR +G  P  + CN   SSL++I L  N  +G +PL+
Sbjct:   126 LLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLN 185

Query:   123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKV-SIDFSSLKNLSWL 181
                +L  L+ L +  N   G++P+SLSN++NL+ +DL SN L G++ S   S +  L +L
Sbjct:   186 YHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFL 245

Query:   182 NLEQNNLGMGTAN-DLD-FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
              L  N+      N +L+ F   L N S L+ + L  N  GGE+  S+ +LS  +    + 
Sbjct:   246 YLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLD 305

Query:   240 ANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSL 299
              N+I G+IPP I NL+NL  L +  N L G IP  + +                 IP  L
Sbjct:   306 QNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMEL 365

Query:   300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXX 359
             G++ +L  L +S NNL G+IP S GN   LR      N L+G +P               
Sbjct:   366 GDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLS 425

Query:   360 XXXXXXXXXXXQVGNLKNL-VKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGXXXX 418
                         V NL+NL + L++S N  SG IP+ LS    +  +++S N   G    
Sbjct:   426 HNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPP 485

Query:   419 XXXXXXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTK--- 475
                        N+S N  S  +P  L  L +++ LD+S+N   G +P     S+  K   
Sbjct:   486 QLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLN 545

Query:   476 IS---LQGNVKLCGGIDELHLPS 495
              S   L GNV   G   +L + S
Sbjct:   546 FSFNLLSGNVSDKGSFSKLTIES 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01680029 hypothetical protein (1021 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	659
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-80
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-59
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-49
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  272 bits (698), Expect = 6e-80
 Identities = 174/529 (32%), Positives = 279/529 (52%), Gaps = 12/529 (2%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
            NL  L +S N L G+IP +IGS  +L+ L +  N L G++P+ + NL++L+   +  N 
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L G+IP  LG +++L  + +G N  SG  P  I  ++SL  + L +N  +G +P  +  N
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-N 258

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
           L NL+ L +  N   G IP S+ +   L  LDL+ N L G++      L+NL  L+L  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246
           N   G          LT+   L+V+ L++N+F GE+P ++    + +T   +  N ++G 
Sbjct: 319 NF-TGK-----IPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGE 371

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLV 306
           IP G+ +  NL  L +  N L G IP ++G  ++L+++ L +NS  G +PS    L  + 
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431

Query: 307 ELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG 366
            L +S NNLQG I S   +   L+M + +RNK  G LP      +    +LDLS N  +G
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSG 489

Query: 367 SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI 426
           ++P ++G+L  L++L +S N+ SG IP  LS+C  L  L++S N   G IP S S +  +
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCG 486
            + ++S N LSG IP+ L N+  +  +++S+NH  G +P  G F      ++ GN+ LCG
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Query: 487 GIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARRRR 535
           G     LP C  K   K       +   +    ++       ++ R R 
Sbjct: 610 GDTTSGLPPC--KRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRN 656

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  224 bits (572), Expect = 1e-62
 Identities = 154/456 (33%), Positives = 233/456 (51%), Gaps = 19/456 (4%)

Query: 14  VSKNKLEGQIPEEIGSL-LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIP 72
           +S N+L G IP++I +   +L+ L +  N  TG +P   G++  L+   +  N L G+IP
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157

Query: 73  TTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKA 132
             +G   +L  L++G N   G  P S+ N++SLE++ L  N+  G +P ++   + +LK 
Sbjct: 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKW 216

Query: 133 LAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGT 192
           + +G NN  G IP  +   ++L  LDL  N L G +     +LKNL +L L QN L    
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 193 ANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIR 252
                 +  L    SL    L  N   GE+P  +  L   +    + +N  +G IP  + 
Sbjct: 277 PPS---IFSLQKLISL---DLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALT 329

Query: 253 NLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL---GNLTKLVELP 309
           +L  L  L +  NK  G IP  +G+  NL  L L  N+L G IP  L   GNL KL+   
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI--- 386

Query: 310 LSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLP 369
           L  N+L+G IP SLG C+ LR      N  +G LP +   +  L   LD+SNN L G + 
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQGRIN 445

Query: 370 LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEF 429
            +  ++ +L  L ++ N+F G +P        LE L++SRN F G +P  L SL  + + 
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504

Query: 430 NVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP 465
            +S N LSG IP+ L +   +  LDLS+N   G++P
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  215 bits (548), Expect = 2e-59
 Identities = 163/491 (33%), Positives = 249/491 (50%), Gaps = 38/491 (7%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           S ++ + +S   + G+I   I  L  +QT+ +  N L+G +PD +   S+          
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS---------- 118

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
                        +L  LN+  N F+G  PR   +I +LE + L  N  SG +P DI   
Sbjct: 119 -------------SLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGS- 162

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
             +LK L +GGN   G IPNSL+N ++LE L L SNQL G++  +   +K+L W+ L  N
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246
           NL      ++  +T      SL  + L  N   G +P S+ NL +    F +  N++SG 
Sbjct: 223 NLSGEIPYEIGGLT------SLNHLDLVYNNLTGPIPSSLGNLKNLQYLF-LYQNKLSGP 275

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLV 306
           IPP I +L  LI+L +  N L G IP+ + +L+NL+ L L++N+  G IP +L +L +L 
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 307 ELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG 366
            L L  N   G IP +LG    L + + S N LTG +P  L S   L   L L +N L G
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF-KLILFSNSLEG 394

Query: 367 SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI 426
            +P  +G  ++L ++ +  N FSG +P   +    + +L+IS N   G I      + S+
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVKLC 485
           +  +++ N   G +P+   +   +E LDLS N F G VP+K G  S   ++ L  N KL 
Sbjct: 455 QMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLS 512

Query: 486 GGIDELHLPSC 496
           G I +  L SC
Sbjct: 513 GEIPD-ELSSC 522

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  185 bits (472), Expect = 2e-49
 Identities = 127/358 (35%), Positives = 198/358 (55%), Gaps = 12/358 (3%)

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLE 184
           N   + ++ + G N  G I +++     ++ ++L++NQL G +  D F++  +L +LNL 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
            NN                +  +L+ + L  N   GE+P+ I + SS +    +G N + 
Sbjct: 127 NNNFTGSIPRG--------SIPNLETLDLSNNMLSGEIPNDIGSFSS-LKVLDLGGNVLV 177

Query: 245 GTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
           G IP  + NL +L  LT+  N+L G IP  +G++K+L+ + L  N+L G IP  +G LT 
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237

Query: 305 LVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLL 364
           L  L L YNNL G IPSSLGN + L+     +NKL+G +P  + S+  L +SLDLS+N L
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL-ISLDLSDNSL 296

Query: 365 NGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK 424
           +G +P  V  L+NL  L +  N F+G IPV L++   L+ L +  N F G IP +L    
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 425 SIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGN 481
           ++   ++S+NNL+G IPE L +   +  L L  N  EGE+PK  G   +  ++ LQ N
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 83.7 bits (207), Expect = 8e-17
 Identities = 39/89 (43%), Positives = 58/89 (65%)

Query: 259 ALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGN 318
            L ++   L G IP+ I +L++LQ ++L  NS++G+IP SLG++T L  L LSYN+  G+
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 319 IPSSLGNCQILRMFNASRNKLTGALPHQL 347
           IP SLG    LR+ N + N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 2/99 (2%)

Query: 241 NQ-ISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL 299
           NQ + G IP  I  L +L ++ +  N + G IP ++G + +L+ L L  NS  GSIP SL
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILR-MFNASRN 337
           G LT L  L L+ N+L G +P++LG   + R  FN + N
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 35/85 (41%), Positives = 53/85 (62%)

Query: 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416
           L L N  L G +P  +  L++L  +++SGN   G IP +L +  SLE L++S N F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 417 PLSLSSLKSIKEFNVSSNNLSGLIP 441
           P SL  L S++  N++ N+LSG +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 381 LDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI 440
           L +      G IP  +S    L+ +N+S N   G IP SL S+ S++  ++S N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 441 PEFLKNLSFMEFLDLSYNHFEGEVPKK--GVFSNKTKISLQGNVKLCGGIDELHLPSCPS 498
           PE L  L+ +  L+L+ N   G VP    G   ++   +   N  LC GI  L   +C  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC-GIPGLR--ACGP 539

Query: 499 KGSIKPKITLLRVLIPVVVSCLILSSCLTIIYARR 533
             S+  KI    +   V V+ L L  C    + RR
Sbjct: 540 HLSVGAKIG---IAFGVSVAFLFLVICAMCWWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 25/115 (21%)

Query: 284 LSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGAL 343
           L L N  L+G IP+ +  L  L  + LS N+++GNIP SLG+                  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS------------------ 464

Query: 344 PHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSA 398
                 IT+L   LDLS N  NGS+P  +G L +L  L+++GN  SG +P  L  
Sbjct: 465 ------ITSLE-VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           ++S+  +L  + +S N + G IP  +GS+ +L+ L + +N   G +P+ +G L++L++  
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 62  IIGNSLGGKIPTTLG 76
           + GNSL G++P  LG
Sbjct: 497 LNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 29/81 (35%), Positives = 48/81 (59%)

Query: 19  LEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLL 78
           L G IP +I  L +LQ++ +  N + G +P  +G++++L+V  +  NS  G IP +LG L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 79  RNLVDLNVGENRFSGMFPRSI 99
            +L  LN+  N  SG  P ++
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 74/254 (29%), Positives = 111/254 (43%), Gaps = 16/254 (6%)

Query: 125 VNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLE 184
           + L NL +L +  NN     P      SNL+ LDL+ N+++  +     +L NL  L+L 
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
            N+L        D    L+N S+L  + L  N+           L S + +  +  N I 
Sbjct: 172 FNDL-------SDLPKLLSNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSII 222

Query: 245 GTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
             +   + NL NL  L +  NKL   +P++IG L NL+ L L NN  Q S  SSLG+LT 
Sbjct: 223 -ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNN--QISSISSLGSLTN 278

Query: 305 LVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLL 364
           L EL LS N+L   +P       +L         LT       L+   L  ++  +    
Sbjct: 279 LRELDLSGNSLSNALPLIALLLLLLE--LLLNLLLTLKALELKLNSILLNNNILSNGETS 336

Query: 365 NGSLPLQVGNLKNL 378
           +      + +L NL
Sbjct: 337 SPEALSILESLNNL 350

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 4e-09
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 339 LTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSA 398
           L G +P+ +  +  L  S++LS N + G++P  +G++ +L  LD+S N F+G IP +L  
Sbjct: 430 LRGFIPNDISKLRHLQ-SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 399 CVSLEYLNISRNFFHGIIPLSLSS-LKSIKEFNVSSN 434
             SL  LN++ N   G +P +L   L     FN + N
Sbjct: 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.1 bits (140), Expect = 7e-09
 Identities = 78/258 (30%), Positives = 121/258 (46%), Gaps = 18/258 (6%)

Query: 148 LSNASNLEILDLTSNQLKG--KVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNC 205
            S+ S L  LDL S         S +  +L  L  L+L  N L     +++  +  LTN 
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL----RSNISELLELTNL 118

Query: 206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEIN 265
           +SL + +        ++P  I  L S + +  +  N+I  ++P  +RNL NL  L +  N
Sbjct: 119 TSLDLDNNNIT----DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173

Query: 266 KLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGN 325
            L   +P  +  L NL  L L  N +   +P  +  L+ L EL LS N++   + SSL N
Sbjct: 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN 230

Query: 326 CQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISG 385
            + L     S NKL      + +   +   +LDLSNN ++    L  G+L NL +LD+SG
Sbjct: 231 LKNLSGLELSNNKLE--DLPESIGNLSNLETLDLSNNQISSISSL--GSLTNLRELDLSG 286

Query: 386 NQFSGVIPVTLSACVSLE 403
           N  S  +P+     + LE
Sbjct: 287 NSLSNALPLIALLLLLLE 304

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 8e-08
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 36  LAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMF 95
           L +D   L G +P+ +  L  L+   + GNS+ G IP +LG + +L  L++  N F+G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 96  PRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNA 151
           P S+  ++SL  + L  N  SG +P             A+GG     +  N   NA
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP------------AALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 25/102 (24%)

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L G IP  +  LR+L  +N+  N   G  P S+ +I+SLE + L +N F+GS        
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-------- 481

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKV 168
                            IP SL   ++L IL+L  N L G+V
Sbjct: 482 -----------------IPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 12/224 (5%)

Query: 262 MEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS--IPSSLGNLTKLVELPLSYNNLQGNI 319
           + +N    T+      L  L  L L + S   S     +L NL  L  L L+ N L+ NI
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109

Query: 320 PSSLGNCQI--LRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKN 377
              L    +  L + N +   +   +     ++  L LS    N +   SLP  + NL N
Sbjct: 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS---DNKIE--SLPSPLRNLPN 164

Query: 378 LVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS 437
           L  LD+S N  S  +P  LS   +L  L++S N     +P  +  L +++E ++S+N++ 
Sbjct: 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII 222

Query: 438 GLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
             +   L NL  +  L+LS N  E      G  SN   + L  N
Sbjct: 223 -ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 117 GSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLK 176
           G +P DI+  L +L+++ + GN+  G+IP SL + ++LE+LDL+ N   G +      L 
Sbjct: 432 GFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 177 NLSWLNLEQNNL 188
           +L  LNL  N+L
Sbjct: 491 SLRILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
           NL  LD+S N+ + +         +L+ L++S N    I P + S L S++  ++S NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 129 NLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL 188
           NLK+L +  N        +     NL++LDL+ N L       FS L +L  L+L  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 401 SLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHF 460
           +L+ L++S N    I   +   L ++K  ++S NNL+ + PE    L  +  LDLS N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 55/144 (38%)

Query: 157 LDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN 216
           L L +  L+G +  D S L++L  +NL  N++       L       + +SL+V+ L  N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG------SITSLEVLDLSYN 476

Query: 217 QFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIG 276
            F G                                                  IP+++G
Sbjct: 477 SFNGS-------------------------------------------------IPESLG 487

Query: 277 ELKNLQQLSLYNNSLQGSIPSSLG 300
           +L +L+ L+L  NSL G +P++LG
Sbjct: 488 QLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 23/55 (41%), Positives = 28/55 (50%)

Query: 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN 410
           SLDLSNN L          L NL  LD+SGN  + + P   S   SL  L++S N
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           SNL EL +S NK+E  +P  + +L NL+ L + FN L+  LP  + NLS L    + GN 
Sbjct: 140 SNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           +   +P  + LL  L +L++  N        S+ N+ +L  + L  N+       +   N
Sbjct: 198 I-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL--EDLPESIGN 253

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLK 165
           L NL+ L +  N    S  +SL + +NL  LDL+ N L 
Sbjct: 254 LSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLS 290

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNL 315
           NL +L +  N+L          L NL+ L L  N+L    P +   L  L  L LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 21/60 (35%), Positives = 25/60 (41%)

Query: 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKL 339
           NL+ L L NN L      +   L  L  L LS NNL    P +      LR  + S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	659
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
PLN03150	623	hypothetical protein; Provisional	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
PLN03150	623	hypothetical protein; Provisional	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG1187	361	consensus Serine/threonine protein kinase [Signal	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
PRK15386	426	type III secretion protein GogB; Provisional	97.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
KOG4341	483	consensus F-box protein containing LRR [General fu	97.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
KOG4341	483	consensus F-box protein containing LRR [General fu	97.69
PRK15386	426	type III secretion protein GogB; Provisional	97.67
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.23
KOG4308	478	consensus LRR-containing protein [Function unknown	96.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.97
KOG1187	361	consensus Serine/threonine protein kinase [Signal	95.2
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.13
KOG4308	478	consensus LRR-containing protein [Function unknown	94.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.73
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.64
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	91.87
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.71
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	90.24
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	89.65
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.5
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	89.47
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	88.7
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	88.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.18
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	88.01
smart00370	26	LRR Leucine-rich repeats, outliers.	87.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.74
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.61
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	87.26
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	87.19
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.96
smart00370	26	LRR Leucine-rich repeats, outliers.	86.66
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.66
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	86.6
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	86.51
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	86.5
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	85.96
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	85.87
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	85.86
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	85.73
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	85.62
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	85.45
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	85.42
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	85.24
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	85.05
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	84.82
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	84.7
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	84.6
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	84.57
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	84.56
PHA02988	283	hypothetical protein; Provisional	84.42
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	84.37
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	83.87
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	83.82
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	83.7
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	83.55
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	83.52
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	83.34
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	83.31
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	83.23
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	83.22
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	83.05
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	82.99
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	82.76
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	82.51
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	82.46
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	82.29
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	81.92
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	81.85
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	81.43
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	81.35
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	81.29
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.05
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	80.97
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	80.88
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	80.38
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	80.09

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.8e-66  Score=593.53  Aligned_cols=483  Identities=35%  Similarity=0.593  Sum_probs=346.1

Q ss_pred             CCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEE
Q 038552            6 YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLN   85 (659)
Q Consensus         6 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   85 (659)
                      +++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            34444444444444444555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             eecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCc
Q 038552           86 VGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLK  165 (659)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  165 (659)
                      +++|.+++.+|..++++++|++|++++|.+++.+|..+. .+++|+.|++++|.+++.+|..+.++++|++|++++|.+.
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            555555555555555555555555555555545555444 4555555555555555555555555555555555555555


Q ss_pred             cccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccc
Q 038552          166 GKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG  245 (659)
Q Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  245 (659)
                      +.+|..+..+++|+.|++++|.+.+      ..+..+..+++|+.|++++|.+.+.+|..+..+. +|+.|++++|.+++
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~  370 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTG------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTG  370 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCC------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEe
Confidence            5555555555555555555555543      3344555666677777777766666666666654 67777777777776


Q ss_pred             cCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcC
Q 038552          246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGN  325 (659)
Q Consensus       246 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  325 (659)
                      .+|.++..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+..++.|+.|++++|.+.+.+|..+..
T Consensus       371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  450 (968)
T PLN00113        371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD  450 (968)
T ss_pred             eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence            66766666777777777777777777777777777777777777777777777777777888888887777777777777


Q ss_pred             CCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeE
Q 038552          326 CQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYL  405 (659)
Q Consensus       326 ~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  405 (659)
                      +++|+.|++++|++.+.+|..+ ..+.++ .|++++|++.+..|..+..+++|++|+|++|++.+.+|..+.++++|++|
T Consensus       451 l~~L~~L~L~~n~~~~~~p~~~-~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  528 (968)
T PLN00113        451 MPSLQMLSLARNKFFGGLPDSF-GSKRLE-NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL  528 (968)
T ss_pred             CCCCcEEECcCceeeeecCccc-ccccce-EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence            7888888888888877777654 346676 89999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCc
Q 038552          406 NISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLC  485 (659)
Q Consensus       406 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc  485 (659)
                      +|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.+++++|++.+.+|..+.+..+...++.||+.+|
T Consensus       529 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc  608 (968)
T PLN00113        529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLC  608 (968)
T ss_pred             ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999989899999999999


Q ss_pred             ccCCCCCCCCCCC
Q 038552          486 GGIDELHLPSCPS  498 (659)
Q Consensus       486 ~~~~~~~~~~c~~  498 (659)
                      ++.+....++|..
T Consensus       609 ~~~~~~~~~~c~~  621 (968)
T PLN00113        609 GGDTTSGLPPCKR  621 (968)
T ss_pred             CCccccCCCCCcc
Confidence            8765555667753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.6e-55  Score=502.31  Aligned_cols=478  Identities=32%  Similarity=0.537  Sum_probs=326.2

Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhc-CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCC
Q 038552            2 NLSRYSNLIELRVSKNKLEGQIPEEIG-SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRN   80 (659)
Q Consensus         2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   80 (659)
                      +|..+++|++|+|++|.+++.+|..+. .+.+|++|++++|.+++.+|.  +.+++|++|++++|.+.+.+|..++++++
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCC
Confidence            356788888888888888877777654 777788888877777766553  34666666666666666666666666666


Q ss_pred             CCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEcc
Q 038552           81 LVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLT  160 (659)
Q Consensus        81 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  160 (659)
                      |++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+++.+|..++++++|++|+++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  244 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV  244 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence            66666666666666666666666666666666666655665554 56666666666666666666666666666666666


Q ss_pred             CCCCccccccccCCCCCCCEEECCCCCCCCCCCCC------------------ccccccccCCCCCcEEEccCCcccccc
Q 038552          161 SNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTAND------------------LDFVTFLTNCSSLKVISLYANQFGGEL  222 (659)
Q Consensus       161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~  222 (659)
                      +|.+.+..|..++++++|+.|++++|.+.+..+..                  ..++..+..+++|+.|++++|.+.+..
T Consensus       245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~  324 (968)
T PLN00113        245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI  324 (968)
T ss_pred             CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence            66666666666666666666666666554310000                  022233344444444444444444444


Q ss_pred             ChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCC
Q 038552          223 PHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNL  302 (659)
Q Consensus       223 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  302 (659)
                      |..+..++ +|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+
T Consensus       325 ~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~  403 (968)
T PLN00113        325 PVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC  403 (968)
T ss_pred             ChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence            44444443 45555555555554455555555555555555555555555555555555555555555555555556666


Q ss_pred             CCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceee
Q 038552          303 TKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD  382 (659)
Q Consensus       303 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~  382 (659)
                      ++|+.|++++|.+++.+|..+..++.|+.|++++|.+++.+|..+..++.++ .|++++|.+.+.+|..+ ..++|+.|+
T Consensus       404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~n~~~~~~p~~~-~~~~L~~L~  481 (968)
T PLN00113        404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ-MLSLARNKFFGGLPDSF-GSKRLENLD  481 (968)
T ss_pred             CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc-EEECcCceeeeecCccc-ccccceEEE
Confidence            6666666666666666666666666677777777766666666666666666 67777777766666544 357788888


Q ss_pred             cCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc
Q 038552          383 ISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       383 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~  462 (659)
                      +++|++++..|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+..+++|+.|++++|++++
T Consensus       482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence            88888888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CccCCcccccccCCCCCc
Q 038552          463 EVPKK-GVFSNKTKISLQGNVKLC  485 (659)
Q Consensus       463 ~~p~~-~~~~~~~~~~~~~n~~lc  485 (659)
                      .+|.. ..+..++.+++++|+..+
T Consensus       562 ~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        562 EIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             cCChhHhcCcccCEEeccCCccee
Confidence            88864 456778999999998665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-39  Score=314.77  Aligned_cols=373  Identities=23%  Similarity=0.267  Sum_probs=236.9

Q ss_pred             cEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCc
Q 038552           34 QTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFN  113 (659)
Q Consensus        34 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  113 (659)
                      +.|++++|.+....+..|.++++|+.+++.+|.+ ..+|..-....+|+.|+|.+|.|+..-.+++..++.|+.|||+.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchh-hhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            3355555555555555555555555555555554 234443333444555555555555444444555555555555555


Q ss_pred             cccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCC
Q 038552          114 RFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTA  193 (659)
Q Consensus       114 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  193 (659)
                      .++ ++|...+..-.++++|+|++|.++..--..|..+.+|..|.|+.|.++...+..|.++++|+.|+|..|.+..   
T Consensus       160 ~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri---  235 (873)
T KOG4194|consen  160 LIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI---  235 (873)
T ss_pred             hhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee---
Confidence            554 4444333233445555555555544444444444555555555555544444444444444444444443321   


Q ss_pred             CCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCc
Q 038552          194 NDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPD  273 (659)
Q Consensus       194 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  273 (659)
                                                                          .-...|..+++|+.|.|..|.+...-..
T Consensus       236 ----------------------------------------------------ve~ltFqgL~Sl~nlklqrN~I~kL~DG  263 (873)
T KOG4194|consen  236 ----------------------------------------------------VEGLTFQGLPSLQNLKLQRNDISKLDDG  263 (873)
T ss_pred             ----------------------------------------------------ehhhhhcCchhhhhhhhhhcCcccccCc
Confidence                                                                1112355666777777777777666666


Q ss_pred             cccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccc
Q 038552          274 TIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTL  353 (659)
Q Consensus       274 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l  353 (659)
                      .|..+.++++|+|..|+++..-..++.++++|+.|+++.|.+...-+..++.+++|+.|++++|+++..-+..+..+..+
T Consensus       264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            67777777777777777776666667777788888888887777667777777888888888888876666677777777


Q ss_pred             cceeccccccccCCCccccccCCCCceeecCCCcccccCC---ccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEE
Q 038552          354 TLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIP---VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFN  430 (659)
Q Consensus       354 ~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  430 (659)
                      + +|+|++|.++..-..+|..+++|++|||++|.++..+.   ..|.++++|+.|++.+|++..+...+|.++++|+.||
T Consensus       344 e-~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  344 E-ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             h-hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            7 78888888876666677888888888888888765433   3567788888888888888877777888888888888


Q ss_pred             CCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          431 VSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       431 l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      |.+|.+..+-|+.|..+ .|++|-+..-.+.+.+.
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             CCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence            88888877778888777 77777776666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.1e-42  Score=318.66  Aligned_cols=452  Identities=30%  Similarity=0.441  Sum_probs=368.0

Q ss_pred             CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552            8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG   87 (659)
Q Consensus         8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   87 (659)
                      .+..+++++|.+. .+-..+.++..|.+|++.+|++. ..|.+++.+..++.++.++|.+ ..+|..++.+.+|+.|+.+
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhhcc
Confidence            4667888888887 56777888888999999998888 7788888888899999998888 5678888888899999999


Q ss_pred             cCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccc
Q 038552           88 ENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK  167 (659)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  167 (659)
                      +|.+. .+|++++.+..|..++..+|+++ .+|.+++ .+.+|..+++.+|+++...|..+. ++.|++||...|-+. .
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMV-NLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccc-cCchHHH-HHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-c
Confidence            88887 67888888888888888888888 8888887 788888889989988865555444 888999998888776 6


Q ss_pred             cccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccC
Q 038552          168 VSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTI  247 (659)
Q Consensus       168 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  247 (659)
                      +|..++.+.+|.-|+++.|++.        +.+.+++|+.|+++++..|++. .+|......-.++..|++.+|+++ ..
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~--------~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~  267 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR--------FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EV  267 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc--------cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cC
Confidence            6777888888888999888874        4457888889999999888876 677777754458888899999888 67


Q ss_pred             CcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCC---------------------------------
Q 038552          248 PPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS---------------------------------  294 (659)
Q Consensus       248 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---------------------------------  294 (659)
                      |..++.+.+|..||+++|.++ .+|..++++ +|+.|.+.+|++...                                 
T Consensus       268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e  345 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE  345 (565)
T ss_pred             chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence            888888888999999999888 456678888 888898888876410                                 


Q ss_pred             -----CCcc---ccCCCCCcEEEccCCccccccCccCcCC---CCCCEEeCCCcccccccchhhhhcccccceecccccc
Q 038552          295 -----IPSS---LGNLTKLVELPLSYNNLQGNIPSSLGNC---QILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNL  363 (659)
Q Consensus       295 -----~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~  363 (659)
                           .+..   ...+.+.+.|++++-+++ .+|...-..   .-....+++.|++. ++|..+..+..+...+.+++|.
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~  423 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK  423 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence                 0001   122445677777777776 455443222   23678889999988 7888888888877677888887


Q ss_pred             ccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhh
Q 038552          364 LNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEF  443 (659)
Q Consensus       364 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  443 (659)
                      ++ -+|..++.+++|..|+|++|.+. .+|..++.+..|++|+++.|++. .+|..+..+..++.+-.++|++....|+.
T Consensus       424 is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~  500 (565)
T KOG0472|consen  424 IS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSG  500 (565)
T ss_pred             cc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHH
Confidence            76 77888999999999999999887 68888999999999999999998 78888888888888888889998887888


Q ss_pred             hcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCC
Q 038552          444 LKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKL  484 (659)
Q Consensus       444 l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~l  484 (659)
                      +..+.+|..||+.+|.+....|..|.+.+++.+.+.|||.-
T Consensus       501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            99999999999999999988888899999999999999864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-37  Score=302.02  Aligned_cols=395  Identities=20%  Similarity=0.208  Sum_probs=312.7

Q ss_pred             cEEEccCCccCcccccccCCC--CCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEc
Q 038552           58 KVFYIIGNSLGGKIPTTLGLL--RNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAI  135 (659)
Q Consensus        58 ~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  135 (659)
                      +.|+.+++.+....-..+...  +.-++|++++|.+...-+..|.++++|+.+++.+|.++ .+|.... ...+|+.|+|
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L  132 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDL  132 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEee
Confidence            456666665532211222221  23456888888888777777888888888888888887 7776543 4556888888


Q ss_pred             cCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccC
Q 038552          136 GGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYA  215 (659)
Q Consensus       136 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  215 (659)
                      .+|.++.+-.+.++.++.|+.|||+.|.++......|..-.++++|+|+.|.++.....      .+.++.         
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~------~F~~ln---------  197 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG------HFDSLN---------  197 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc------cccccc---------
Confidence            88888777777788888888888888887766666677777788888887777654332      222223         


Q ss_pred             CccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCC
Q 038552          216 NQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSI  295 (659)
Q Consensus       216 n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  295 (659)
                                      +|..|.++.|.++..-+..|.+++.|+.|+|..|.+.-.-.-.|.++++|+.|.+..|.+...-
T Consensus       198 ----------------sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~  261 (873)
T KOG4194|consen  198 ----------------SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD  261 (873)
T ss_pred             ----------------hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence                            4555555566665444566778999999999999987544567899999999999999999888


Q ss_pred             CccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccC
Q 038552          296 PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNL  375 (659)
Q Consensus       296 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l  375 (659)
                      ...|..+.++++|+|..|+++..-..++-++++|+.|++++|.+...-+..+..++.+. +|+|++|++....+.+|..+
T Consensus       262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~-~LdLs~N~i~~l~~~sf~~L  340 (873)
T KOG4194|consen  262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK-ELDLSSNRITRLDEGSFRVL  340 (873)
T ss_pred             Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce-eEeccccccccCChhHHHHH
Confidence            88999999999999999999977778889999999999999999988899999999998 99999999998889999999


Q ss_pred             CCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCc---ccccCCCCCCEEECCCCcccccchhhhcCCCCCCe
Q 038552          376 KNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP---LSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEF  452 (659)
Q Consensus       376 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  452 (659)
                      ..|++|+|++|.++......|..+++|++|||++|.++..+.   ..|.++++|+.|++.+|++..+.-..|..++.|+.
T Consensus       341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence            999999999999997777889999999999999999987654   35788999999999999998766689999999999


Q ss_pred             eeCcCCcCcccCCCCCccCCcccccccCCCCCcc
Q 038552          453 LDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       453 l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~  486 (659)
                      ||+.+|.+...-|..-....+.++.+..-..+|.
T Consensus       421 LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPMELKELVMNSSSFLCD  454 (873)
T ss_pred             ecCCCCcceeecccccccchhhhhhhcccceEEe
Confidence            9999999987766542223556666665555664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.8e-40  Score=308.39  Aligned_cols=434  Identities=29%  Similarity=0.443  Sum_probs=370.1

Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC
Q 038552            2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL   81 (659)
Q Consensus         2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   81 (659)
                      .+.++..+.+|++.+|.+. ..|.+++.+..++.++.++|.+. .+|..+..+.+|+.+++++|.+ ...|++++.+..|
T Consensus        63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l  139 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDL  139 (565)
T ss_pred             hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce-eecCchHHHHhhh
Confidence            4568889999999999998 78999999999999999999998 8899999999999999999998 5678889999999


Q ss_pred             CEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccC
Q 038552           82 VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTS  161 (659)
Q Consensus        82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  161 (659)
                      ..++..+|+++ ..|.+++.+.+|..+++.+|.++ .+|.+.- .++.|+.++...|-++ .+|..++.+.+|+.|++..
T Consensus       140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRR  215 (565)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhh
Confidence            99999999998 78999999999999999999998 7777665 5899999999888886 7788899999999999999


Q ss_pred             CCCccccccccCCCCCCCEEECCCCCCCCCCCCCcccccc-ccCCCCCcEEEccCCccccccChhHHhccccCCEEEccc
Q 038552          162 NQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTF-LTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA  240 (659)
Q Consensus       162 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  240 (659)
                      |.+. ..| .|+.+..|++|++..|++..       +++. ..+++++.+||+..|++. +.|+.+.-+. +|.+|++++
T Consensus       216 Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-------lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr-sL~rLDlSN  284 (565)
T KOG0472|consen  216 NKIR-FLP-EFPGCSLLKELHVGENQIEM-------LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR-SLERLDLSN  284 (565)
T ss_pred             cccc-cCC-CCCccHHHHHHHhcccHHHh-------hHHHHhcccccceeeeccccccc-cCchHHHHhh-hhhhhcccC
Confidence            9987 455 79999999999999998864       3333 448899999999999998 8899888876 899999999


Q ss_pred             CcccccCCcccccCCCcCeeecccccCCCC--------------------------------------CCc---cccCCC
Q 038552          241 NQISGTIPPGIRNLVNLIALTMEINKLHGT--------------------------------------IPD---TIGELK  279 (659)
Q Consensus       241 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--------------------------------------~~~---~~~~~~  279 (659)
                      |.++ .+|.+++++ .|+.|.+.+|.+...                                      .+.   ......
T Consensus       285 N~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i  362 (565)
T KOG0472|consen  285 NDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII  362 (565)
T ss_pred             Cccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence            9998 578899999 899999888865210                                      000   112345


Q ss_pred             CCcEEEccCCCCCCCCCc-cccCC--CCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccce
Q 038552          280 NLQQLSLYNNSLQGSIPS-SLGNL--TKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS  356 (659)
Q Consensus       280 ~L~~L~l~~n~l~~~~~~-~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~  356 (659)
                      +.+.|++++-+++ .+|. .|..-  .-....+++.|++. .+|..+..+..+.+.-+..|+..+.+|..+++++.++ .
T Consensus       363 ~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt-~  439 (565)
T KOG0472|consen  363 TTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT-F  439 (565)
T ss_pred             hhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce-e
Confidence            7888999998888 4554 44332  23778999999998 7888777776665544444444558999999999999 9


Q ss_pred             eccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552          357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL  436 (659)
Q Consensus       357 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  436 (659)
                      |++++|.+. .+|..++.+..|+.|+++.|+|. .+|..+..+..++.+-.++|++....|..+.++.+|..||+.+|.+
T Consensus       440 L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl  517 (565)
T KOG0472|consen  440 LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL  517 (565)
T ss_pred             eecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence            999999887 78899999999999999999997 7888888888899999999999988888899999999999999999


Q ss_pred             cccchhhhcCCCCCCeeeCcCCcCc
Q 038552          437 SGLIPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       437 ~~~~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      . .+|..++++++|++|++++|+|.
T Consensus       518 q-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  518 Q-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             h-hCChhhccccceeEEEecCCccC
Confidence            7 67899999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=311.87  Aligned_cols=444  Identities=30%  Similarity=0.381  Sum_probs=289.5

Q ss_pred             CCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552            9 LIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE   88 (659)
Q Consensus         9 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   88 (659)
                      +..|+++.|.+...--+.+..+.+|+.|++++|.+. ..|..+..+++|+.|+++.|.+ ...|.+..++.+|++|.|.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI-RSVPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH-hhCchhhhhhhcchhheecc
Confidence            556666666655322233445556777777777765 6677777777777777777776 45566667777777777777


Q ss_pred             CcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCC-------------------cCCcccChhcc
Q 038552           89 NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGN-------------------NFFGSIPNSLS  149 (659)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-------------------~~~~~~~~~l~  149 (659)
                      |.+. ..|..+..+.+|++|+++.|.+. .+|.-+. .++.+..+..++|                   .+.+.++..+.
T Consensus       101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~  177 (1081)
T KOG0618|consen  101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY  177 (1081)
T ss_pred             chhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh
Confidence            7665 66777777777777777777775 6665444 4444444444444                   44444444444


Q ss_pred             CCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhc
Q 038552          150 NASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANL  229 (659)
Q Consensus       150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  229 (659)
                      .++.  .|++.+|.+.   -..+..+.+|+.+....|++....          -.-++|+.|+.+.|.++...+.   ..
T Consensus       178 ~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----------~~g~~l~~L~a~~n~l~~~~~~---p~  239 (1081)
T KOG0618|consen  178 NLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----------ISGPSLTALYADHNPLTTLDVH---PV  239 (1081)
T ss_pred             hhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----------ecCcchheeeeccCcceeeccc---cc
Confidence            4443  4555555544   123445555555555555543211          1225566677777766522111   12


Q ss_pred             cccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEE
Q 038552          230 SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELP  309 (659)
Q Consensus       230 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  309 (659)
                      +.++++++++.++++ .+|.|++.+.+|+.++..+|.++ .+|..+....+|+.|.+.+|.+. .+|.....+++|++|+
T Consensus       240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            336778888888877 45678888888888888888774 56666677777888888888777 6666677788888888


Q ss_pred             ccCCccccccCc-cCcCCCC-CCEEeCCCcccccccch-hhhhcccccceeccccccccCCCccccccCCCCceeecCCC
Q 038552          310 LSYNNLQGNIPS-SLGNCQI-LRMFNASRNKLTGALPH-QLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGN  386 (659)
Q Consensus       310 l~~n~l~~~~~~-~~~~~~~-L~~L~l~~n~l~~~~~~-~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  386 (659)
                      |..|++. ..|. .+..... |..|+.+.|.+. ..|. .-...+.+. .|++.+|.+++.....+.++.+|+.|+|++|
T Consensus       317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq-~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQ-ELYLANNHLTDSCFPVLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             ehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHH-HHHHhcCcccccchhhhccccceeeeeeccc
Confidence            8888776 3343 2222222 555666666655 2221 122334444 7888888888777777888888888888888


Q ss_pred             cccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          387 QFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       387 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      ++.......+.++..|++|+||+|+++ .+|.+...++.|+.|...+|++.. .| .+..++.|+.+|++.|+++...-.
T Consensus       394 rL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~  470 (1081)
T KOG0618|consen  394 RLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLP  470 (1081)
T ss_pred             ccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhh
Confidence            887555566778888888888888887 667788888888888888888873 45 667788888888888888654332


Q ss_pred             CCcc-CCcccccccCCCCC
Q 038552          467 KGVF-SNKTKISLQGNVKL  484 (659)
Q Consensus       467 ~~~~-~~~~~~~~~~n~~l  484 (659)
                      .... ++++.++++||.++
T Consensus       471 ~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  471 EALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhCCCcccceeeccCCccc
Confidence            3333 77888888888764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=1.7e-34  Score=283.99  Aligned_cols=373  Identities=28%  Similarity=0.407  Sum_probs=254.0

Q ss_pred             cCCCCCcEEEccCCccC-cccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCC
Q 038552           52 GNLSALKVFYIIGNSLG-GKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNL  130 (659)
Q Consensus        52 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  130 (659)
                      +-++..|-.++++|.++ +..|.....+++++.|.|....+. .+|+.++.+.+|++|.++.|++. .+--.+. .++.|
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~L   80 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRL   80 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhh
Confidence            34556677788888876 566777778888888888887776 67888888888888888888776 4444444 67788


Q ss_pred             cEEEccCCcCC-cccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCc
Q 038552          131 KALAIGGNNFF-GSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLK  209 (659)
Q Consensus       131 ~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~  209 (659)
                      +.+.++.|++. .-+|..+-.+..|..|||++|++. .+|..+..-+++-+|+|++|++..+..      ..+.+++.|-
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn------~lfinLtDLL  153 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN------SLFINLTDLL  153 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc------hHHHhhHhHh
Confidence            88888777765 236667777888888888888776 566777777777778888777764321      2234455566


Q ss_pred             EEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCC
Q 038552          210 VISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNN  289 (659)
Q Consensus       210 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  289 (659)
                      .|||++|.+. .                         +|+.+..+..|+.|+|++|.+...--..+..+.+|+.|.+++.
T Consensus       154 fLDLS~NrLe-~-------------------------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  154 FLDLSNNRLE-M-------------------------LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             hhccccchhh-h-------------------------cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence            6666666654 3                         3444455555555555555543322222334555566666655


Q ss_pred             CCC-CCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCC
Q 038552          290 SLQ-GSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSL  368 (659)
Q Consensus       290 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~  368 (659)
                      +-+ ..+|.++..+.+|..+++|.|.+. .+|..+-++++|+.|++++|.++ .+......+..++ .|++|+|+++ .+
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lE-tLNlSrNQLt-~L  283 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLE-TLNLSRNQLT-VL  283 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhh-hhccccchhc-cc
Confidence            433 245666666666666666666665 56666666666666666666666 4444455555666 6777777776 67


Q ss_pred             ccccccCCCCceeecCCCccc-ccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCC
Q 038552          369 PLQVGNLKNLVKLDISGNQFS-GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL  447 (659)
Q Consensus       369 ~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  447 (659)
                      |.++..+++|+.|.+.+|+++ ..+|+.++.+.+|+++..++|.+. ..|+.+..|.+|+.|.|++|.+. .+|+.+.-+
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL  361 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL  361 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence            777777777888887777765 247778888888888888888776 77788888888888888888876 467888888


Q ss_pred             CCCCeeeCcCCcCcccCCC
Q 038552          448 SFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       448 ~~L~~l~l~~n~l~~~~p~  466 (659)
                      +.|+.||+..|+-..-.|.
T Consensus       362 ~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  362 PDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             CCcceeeccCCcCccCCCC
Confidence            8888888888876544444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=2e-34  Score=283.48  Aligned_cols=369  Identities=25%  Similarity=0.366  Sum_probs=216.2

Q ss_pred             CCCCCCCEEEccCCccc-ccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCC
Q 038552            4 SRYSNLIELRVSKNKLE-GQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLV   82 (659)
Q Consensus         4 ~~~~~L~~L~ls~n~~~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   82 (659)
                      +-++-.+-+|+++|.++ +.+|.....+..++-|.|...++. .+|+.++.+.+|++|.+++|.+. .+-..+..++.|+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            44666777788888887 567777777778887877777766 67777778888888888877763 4445667777777


Q ss_pred             EEEeecCcCC-ccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccC
Q 038552           83 DLNVGENRFS-GMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTS  161 (659)
Q Consensus        83 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  161 (659)
                      .+.+.+|++. .-+|..+..+..|..|+|+.|.+. +.|.++- ...++-.|+|++|++..+....+.+++.|-.|||++
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            7777777765 346777777777777777777777 7777665 566777777777777644444556777777777777


Q ss_pred             CCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccC
Q 038552          162 NQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN  241 (659)
Q Consensus       162 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  241 (659)
                      |.+. ..|.....+..|++|.|++|.+..      .....+..++.|++|.+++.+-+                      
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h------fQLrQLPsmtsL~vLhms~TqRT----------------------  210 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNH------FQLRQLPSMTSLSVLHMSNTQRT----------------------  210 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhH------HHHhcCccchhhhhhhcccccch----------------------
Confidence            7765 344456666677777777665543      12223334444444444443211                      


Q ss_pred             cccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCc
Q 038552          242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS  321 (659)
Q Consensus       242 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  321 (659)
                                                ..-+|.++..+.+|..++++.|.+. .+|+.+.++++|+.|+||+|.++ .+..
T Consensus       211 --------------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~  262 (1255)
T KOG0444|consen  211 --------------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNM  262 (1255)
T ss_pred             --------------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeec
Confidence                                      0122333333344444444444443 34444444444444444444443 2222


Q ss_pred             cCcCCCCCCEEeCCCcccccccchhhhhcccccceecccccccc-CCCccccccCCCCceeecCCCcccccCCccccCCC
Q 038552          322 SLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN-GSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV  400 (659)
Q Consensus       322 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  400 (659)
                      ..+...+|++|+++.|+++ .+|..++.++.++ .|.+.+|++. ..+|..++.+.+|+.+..++|.+. ..|+.+..|.
T Consensus       263 ~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~-kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~  339 (1255)
T KOG0444|consen  263 TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT-KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV  339 (1255)
T ss_pred             cHHHHhhhhhhccccchhc-cchHHHhhhHHHH-HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH
Confidence            2223334444555555544 4455555555554 4555555444 234555555555666665555554 5555566666


Q ss_pred             CCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccc
Q 038552          401 SLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS  437 (659)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  437 (659)
                      .|+.|.|+.|++. .+|+++.-++.|+.||+..|.-.
T Consensus       340 kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  340 KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             HHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            6666666666655 45555555666666666666543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=3.9e-33  Score=286.99  Aligned_cols=442  Identities=27%  Similarity=0.374  Sum_probs=349.1

Q ss_pred             EEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCc
Q 038552           11 ELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENR   90 (659)
Q Consensus        11 ~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   90 (659)
                      ++|++..+++ .+|..+.+...++.|+++.|.+....-+.+.+.-+|+.|++++|.+ +..|..+..+.+|+.|+++.|.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhh
Confidence            4678888887 7888887777799999999988754344556666799999999998 6889999999999999999999


Q ss_pred             CCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCC--------
Q 038552           91 FSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSN--------  162 (659)
Q Consensus        91 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n--------  162 (659)
                      +. .+|.+..++.+|++|.|.+|.+. .+|.++. .+.+|++|++++|.+. .+|..+..++.++.+..++|        
T Consensus        80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~  155 (1081)
T KOG0618|consen   80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ  155 (1081)
T ss_pred             Hh-hCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence            98 78899999999999999999887 8999887 7999999999999997 56666666665555555555        


Q ss_pred             -----------CCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccc
Q 038552          163 -----------QLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSS  231 (659)
Q Consensus       163 -----------~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  231 (659)
                                 .+.+.++.+...+..  .|+|++|.+..         ..+..+++|+.|....|++..     +....+
T Consensus       156 ~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---------~dls~~~~l~~l~c~rn~ls~-----l~~~g~  219 (1081)
T KOG0618|consen  156 TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---------LDLSNLANLEVLHCERNQLSE-----LEISGP  219 (1081)
T ss_pred             ccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---------hhhhhccchhhhhhhhcccce-----EEecCc
Confidence                       334444444444443  47777776532         345566677777777666541     111123


Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      +++.|+..+|.++...+  -....+|+.+++++|.+++ +|++++.+.+|+.+...+|.++ .+|..+....+|+.|...
T Consensus       220 ~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~  295 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA  295 (1081)
T ss_pred             chheeeeccCcceeecc--ccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence            78888888888773332  2344689999999999984 5699999999999999999996 788888888999999999


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccc-cceeccccccccCCCccccccCCCCceeecCCCcccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTL-TLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG  390 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l-~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  390 (659)
                      .|.+. .+|.......+|++|++..|++. ..|..+...... ...++.+.|.+.......=..++.|+.|++.+|.+++
T Consensus       296 ~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  296 YNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             hhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence            99998 67777888999999999999998 566655444332 2257777777764332233456789999999999998


Q ss_pred             cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCcc
Q 038552          391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVF  470 (659)
Q Consensus       391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~  470 (659)
                      ..-..+.+...|+.|+|++|++.......+.+++.|++|+||+|+++ .+|+.+..++.|++|...+|++. ..|.....
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l  451 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQL  451 (1081)
T ss_pred             cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhc
Confidence            87778899999999999999999666677899999999999999998 56899999999999999999998 56777788


Q ss_pred             CCcccccccCCC
Q 038552          471 SNKTKISLQGNV  482 (659)
Q Consensus       471 ~~~~~~~~~~n~  482 (659)
                      +.+..++++.|.
T Consensus       452 ~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  452 PQLKVLDLSCNN  463 (1081)
T ss_pred             CcceEEecccch
Confidence            889999998873

>PLN03210 Resistant to P

Probab=99.92  E-value=7.4e-24  Score=244.69  Aligned_cols=317  Identities=21%  Similarity=0.237  Sum_probs=165.6

Q ss_pred             cccccCCCC-CCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhcc
Q 038552           71 IPTTLGLLR-NLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLS  149 (659)
Q Consensus        71 ~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  149 (659)
                      +|..|..++ +|+.|.+.++.++ .+|..+ ...+|+.|++++|.+. .++..+. .+++|+.|+++++.....+|. +.
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls  654 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIPD-LS  654 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCCc-cc
Confidence            333444332 3555555554443 344443 2345555555555444 3444332 445555555554433333332 44


Q ss_pred             CCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhc
Q 038552          150 NASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANL  229 (659)
Q Consensus       150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  229 (659)
                      .+++|+.|++++|.....+|..++++++|+.|++++|..-.      .++..+ ++++|+.|++++|.....+|..    
T Consensus       655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----  723 (1153)
T PLN03210        655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------ILPTGI-NLKSLYRLNLSGCSRLKSFPDI----  723 (1153)
T ss_pred             cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------ccCCcC-CCCCCCEEeCCCCCCccccccc----
Confidence            55555555555554434444455555555555555442111      111111 3455555555555433333321    


Q ss_pred             cccCCEEEcccCcccccCCcccccCCCcCeeecccccCC-------CCCCccccCCCCCcEEEccCCCCCCCCCccccCC
Q 038552          230 SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH-------GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNL  302 (659)
Q Consensus       230 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  302 (659)
                      ..+++.|++++|.+. .+|..+ .+++|+.|.+.++...       ...+..+...++|+.|++++|...+.+|..++++
T Consensus       724 ~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L  801 (1153)
T PLN03210        724 STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL  801 (1153)
T ss_pred             cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCC
Confidence            225556666666554 344333 3555666665543211       1111122334677777777777666777777777


Q ss_pred             CCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceee
Q 038552          303 TKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD  382 (659)
Q Consensus       303 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~  382 (659)
                      ++|+.|++++|...+.+|... ++++|+.|++++|.....+|...   ..+. .|++++|.+. .+|.++..+++|+.|+
T Consensus       802 ~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL~-~L~Ls~n~i~-~iP~si~~l~~L~~L~  875 (1153)
T PLN03210        802 HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS---TNIS-DLNLSRTGIE-EVPWWIEKFSNLSFLD  875 (1153)
T ss_pred             CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---cccC-EeECCCCCCc-cChHHHhcCCCCCEEE
Confidence            777777777775545666554 56777777777775544444322   2343 5666666665 4566666666677776


Q ss_pred             cCCCcccccCCccccCCCCCCeEECCCCC
Q 038552          383 ISGNQFSGVIPVTLSACVSLEYLNISRNF  411 (659)
Q Consensus       383 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  411 (659)
                      |++|+-...+|..+..++.|+.+++++|.
T Consensus       876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        876 MNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCCcCccCcccccccCCCeeecCCCc
Confidence            66643333455556666666666666664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=1.1e-22  Score=234.91  Aligned_cols=338  Identities=19%  Similarity=0.235  Sum_probs=162.5

Q ss_pred             cccCCCCCCCEEEeecCc------CCccCcccccCCC-CCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccC
Q 038552           73 TTLGLLRNLVDLNVGENR------FSGMFPRSICNIS-SLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIP  145 (659)
Q Consensus        73 ~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  145 (659)
                      .+|.++++|++|.+..+.      +...+|..+..++ +|+.|.+.++.+. .+|..+  ...+|+.|++.++.+. .++
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccc
Confidence            345666666666665432      1223444454443 4666666666555 555544  3456666666666554 344


Q ss_pred             hhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChh
Q 038552          146 NSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHS  225 (659)
Q Consensus       146 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  225 (659)
                      ..+..+++|+.|+++++.....+| .++.+++|+.|++.+|....      .++..+..+++|+.|++++|.....+|..
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV------ELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc------ccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            445556666666666554333333 25555666666665543221      33444555556666666555433344443


Q ss_pred             HHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCC-------CCCCcc
Q 038552          226 IANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ-------GSIPSS  298 (659)
Q Consensus       226 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~  298 (659)
                      + .+ .+|+.|++++|.....+|..   .++|+.|++++|.+. .+|..+ .+++|++|++.++...       ...+..
T Consensus       701 i-~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        701 I-NL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             C-CC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhh
Confidence            3 22 24555555555433333321   234555555555543 233322 3445555555442211       011111


Q ss_pred             ccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCC
Q 038552          299 LGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNL  378 (659)
Q Consensus       299 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L  378 (659)
                      +..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ +++.+. .|++++|.....+|..   .++|
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~-~L~Ls~c~~L~~~p~~---~~nL  848 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLE-SLDLSGCSRLRTFPDI---STNI  848 (1153)
T ss_pred             hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccC-EEECCCCCcccccccc---cccc
Confidence            2223455555555555444555555555555555555554333444433 344444 4555554433333321   2345


Q ss_pred             ceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCC
Q 038552          379 VKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN  434 (659)
Q Consensus       379 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  434 (659)
                      ++|+|++|.++ .+|..+..+++|++|++++|.-...+|..+..+++|+.+++++|
T Consensus       849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            55555555554 34444555555555555554333334444445555555555555

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=2.5e-25  Score=208.44  Aligned_cols=283  Identities=19%  Similarity=0.188  Sum_probs=175.5

Q ss_pred             CcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccC-ccccccChHHHhcCCCCCcEEEc
Q 038552           57 LKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPF-NRFSGSLPLDIAVNLPNLKALAI  135 (659)
Q Consensus        57 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l  135 (659)
                      -..++|..|.|+...|.+|+.+++|+.|||++|+|+.+-|++|..+..|..|-+.+ |.++ .+|.+.+.++.+|+.|.+
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhc
Confidence            34556666666555556666666666666666666666666666666665555444 5665 666666666666666666


Q ss_pred             cCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCc------cccccccCCCCCc
Q 038552          136 GGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDL------DFVTFLTNCSSLK  209 (659)
Q Consensus       136 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~------~~~~~l~~~~~L~  209 (659)
                      .-|++..+..+.|..+++|..|.+.+|.+.......|..+..++.+.+..|.+-....-.|      ..+...+......
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            6666665556666666666666666666654444466666666666666554211100000      0011111111222


Q ss_pred             EEEccCCccccccChhHHhccccCCEEEcccCcccccCC-cccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccC
Q 038552          210 VISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIP-PGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYN  288 (659)
Q Consensus       210 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  288 (659)
                      -..+.++++...-+..+......+..--.+.+...+..| ..|..+++|+.|++++|++++.-+.+|.+...+++|+|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            222222222211111111100011111112222333333 3578899999999999999999899999999999999999


Q ss_pred             CCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccc
Q 038552          289 NSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT  340 (659)
Q Consensus       289 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  340 (659)
                      |++...-...|.++..|+.|+|++|+++...|.+|..+.+|..|++-.|.+.
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            9998777778899999999999999999889999999999999999877653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=5.8e-25  Score=206.05  Aligned_cols=285  Identities=20%  Similarity=0.252  Sum_probs=195.9

Q ss_pred             cCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec-CcCCccCccccc
Q 038552           22 QIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE-NRFSGMFPRSIC  100 (659)
Q Consensus        22 ~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~  100 (659)
                      .+|..+.  +.-..+.|..|+|+...+.+|+.+++||.|+|++|.|+.+.|++|.++++|-.|-+.+ |+|+......|+
T Consensus        60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            3454443  2456677788888877777888888888888888888888888888888887777766 777755556788


Q ss_pred             CCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcc------------cc
Q 038552          101 NISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG------------KV  168 (659)
Q Consensus       101 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~  168 (659)
                      ++..|+.|.+.-|.+. -++.+.+..++++..|.+..|.+..+....+..+..++.+.+..|.+..            ..
T Consensus       138 gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             hHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            8888888888888776 6777777778888888888888775555577788888888777765321            11


Q ss_pred             ccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChh-HHhccccCCEEEcccCcccccC
Q 038552          169 SIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHS-IANLSSTMTDFRIGANQISGTI  247 (659)
Q Consensus       169 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~  247 (659)
                      +..++.........+.+.++......     ........+..-..+.+...+..|.. +..++ +|+.+++++|.+++.-
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~-----kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~  290 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDAR-----KFLCSLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIE  290 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchh-----hhhhhHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhh
Confidence            22233333333333333333222111     11111111211122233334444543 44444 8888899999888888


Q ss_pred             CcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCcc
Q 038552          248 PPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNL  315 (659)
Q Consensus       248 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  315 (659)
                      +.+|.....++.|.|..|++...-...|.++..|+.|+|.+|+++..-|..|..+.+|.+|.+-.|.+
T Consensus       291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            88888999999999999988766667788899999999999999988888888889999998877754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=1.2e-19  Score=194.27  Aligned_cols=264  Identities=26%  Similarity=0.285  Sum_probs=144.4

Q ss_pred             CCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEecc
Q 038552           32 NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLP  111 (659)
Q Consensus        32 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  111 (659)
                      .-..|+++++.++ .+|..+.  ++|+.|++++|.++ .+|.   .+++|++|++++|+++ .+|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            4556777777776 5666554  36777777777774 3443   2467777777777777 34532   3567777777


Q ss_pred             CccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCC
Q 038552          112 FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMG  191 (659)
Q Consensus       112 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  191 (659)
                      .|.++ .+|.    ...+|+.|++++|+++. +|.   ..++|+.|++++|.+++. |..   ..+|+.|++.+|.++..
T Consensus       271 ~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~L  337 (788)
T PRK15387        271 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTSL  337 (788)
T ss_pred             CCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCccccc
Confidence            77776 5554    23467777777777763 343   235677777777777643 221   23466667777766532


Q ss_pred             CCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCC
Q 038552          192 TANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTI  271 (659)
Q Consensus       192 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  271 (659)
                      .       . +  ..+|+.|++++|.+. .+|..    +.+++.|++++|.+++ +|..   ..+|+.|++++|.+++ +
T Consensus       338 P-------~-l--p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-L  397 (788)
T PRK15387        338 P-------T-L--PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-L  397 (788)
T ss_pred             c-------c-c--ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-C
Confidence            1       1 1  135666666666665 23321    2245555555555552 3322   2345555555555543 2


Q ss_pred             CccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhh
Q 038552          272 PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQL  347 (659)
Q Consensus       272 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  347 (659)
                      |..   .++|+.|++++|++.+ +|..   ..+|+.|++++|+++ .+|..+..+++|+.+++++|++++..+..+
T Consensus       398 P~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        398 PVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            221   2345555555555542 3322   223445555555554 445555555555555555555554444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=1.5e-19  Score=193.66  Aligned_cols=265  Identities=28%  Similarity=0.370  Sum_probs=168.8

Q ss_pred             CCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCC
Q 038552          128 PNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSS  207 (659)
Q Consensus       128 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~  207 (659)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++.+|+++. +|.   .+++|++|++++|+++...       .   ..++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP-------~---lp~s  263 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLP-------V---LPPG  263 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCccc-------C---cccc
Confidence            34566777777776 4566554  367777777777764 332   2467777777777776431       1   1246


Q ss_pred             CcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEcc
Q 038552          208 LKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLY  287 (659)
Q Consensus       208 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  287 (659)
                      |+.|+++.|.+. .+|.    ....|+.|++++|.++. +|.   .+++|+.|++++|.+.+ +|..   ..+|+.|+++
T Consensus       264 L~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls  330 (788)
T PRK15387        264 LLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAY  330 (788)
T ss_pred             cceeeccCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccc
Confidence            777777777765 3333    22357777777777763 443   23567788888887774 3332   2456777777


Q ss_pred             CCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCC
Q 038552          288 NNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS  367 (659)
Q Consensus       288 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~  367 (659)
                      +|.+.+ +|..   .++|+.|++++|+++ .+|..   .++|+.|++++|.+. .+|...   ..+. .|++++|.+.+ 
T Consensus       331 ~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L~-~LdLs~N~Lt~-  396 (788)
T PRK15387        331 NNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPALP---SGLK-ELIVSGNRLTS-  396 (788)
T ss_pred             cCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCcccc---cccc-eEEecCCcccC-
Confidence            777763 4431   246778888888777 34542   245677777777776 355432   3444 67777777763 


Q ss_pred             CccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhh
Q 038552          368 LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFL  444 (659)
Q Consensus       368 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  444 (659)
                      +|..   .++|+.|++++|+++. +|..   ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus       397 LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        397 LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            4432   2567777888887774 4532   245677788888777 567777777788888888888877766655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=5.2e-18  Score=183.19  Aligned_cols=246  Identities=27%  Similarity=0.417  Sum_probs=140.0

Q ss_pred             CCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhcccc
Q 038552          153 NLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSST  232 (659)
Q Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  232 (659)
                      +...|+++++.++. +|..+.  +.|+.|++++|+++..       +..+  +++|+.|++++|.+. .+|..+.   .+
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsL-------P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~  242 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSL-------PENL--QGNIKTLYANSNQLT-SIPATLP---DT  242 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcC-------Chhh--ccCCCEEECCCCccc-cCChhhh---cc
Confidence            45677787777763 444332  4677888888877642       2222  246777788777776 4555443   25


Q ss_pred             CCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccC
Q 038552          233 MTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSY  312 (659)
Q Consensus       233 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  312 (659)
                      |+.|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|++.+ +|..+.  ++|+.|++++
T Consensus       243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQS  313 (754)
T ss_pred             ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcC
Confidence            777777777766 4555443  46777777777766 3454432  467777777777663 343322  3566677777


Q ss_pred             CccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccC
Q 038552          313 NNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVI  392 (659)
Q Consensus       313 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  392 (659)
                      |.++. +|..+.  ++|+.|++++|.+++ +|..+.  +.+. .|++++|++. .+|..+.  ++|++|+|++|+++. +
T Consensus       314 N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~-~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-L  382 (754)
T PRK15370        314 NSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQ-VLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-L  382 (754)
T ss_pred             Ccccc-CCcccc--ccceeccccCCcccc-CChhhc--Cccc-EEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-C
Confidence            76663 443322  456666666666663 454432  3444 5666666665 3444332  456666666666652 3


Q ss_pred             CccccCCCCCCeEECCCCCCCCCCcccc----cCCCCCCEEECCCCccc
Q 038552          393 PVTLSACVSLEYLNISRNFFHGIIPLSL----SSLKSIKEFNVSSNNLS  437 (659)
Q Consensus       393 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~  437 (659)
                      |..+.  .+|+.|++++|++. .+|..+    ..++.+..|++.+|+++
T Consensus       383 P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        383 PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            33332  24566666666655 333222    23355566666666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=2.3e-19  Score=180.89  Aligned_cols=208  Identities=23%  Similarity=0.283  Sum_probs=145.8

Q ss_pred             EEEccCCcccc-cCchhhcCCCCCcEEeccccCCCcc----ccccccCCCCCcEEEccCCccC------cccccccCCCC
Q 038552           11 ELRVSKNKLEG-QIPEEIGSLLNLQTLAIDFNYLTGQ----LPDFVGNLSALKVFYIIGNSLG------GKIPTTLGLLR   79 (659)
Q Consensus        11 ~L~ls~n~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~   79 (659)
                      .|+|+.+.+++ .....+..+.+|++|+++++.+++.    ++..+...++|++|+++++.+.      ..++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            57788888873 3455567778899999999988543    5556678888999999988774      22345567788


Q ss_pred             CCCEEEeecCcCCccCcccccCCCC---CCEEeccCcccccc----ChHHHhcCC-CCCcEEEccCCcCCcc----cChh
Q 038552           80 NLVDLNVGENRFSGMFPRSICNISS---LEWIYLPFNRFSGS----LPLDIAVNL-PNLKALAIGGNNFFGS----IPNS  147 (659)
Q Consensus        80 ~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~  147 (659)
                      +|++|++++|.+.+..+..+..+.+   |++|++++|.+++.    +...+. .+ ++|+.|++++|.+++.    ++..
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            9999999998887656666655555   99999998887631    222333 45 7888899988888732    3345


Q ss_pred             ccCCCCCCEEEccCCCCccc----cccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccc
Q 038552          148 LSNASNLEILDLTSNQLKGK----VSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGE  221 (659)
Q Consensus       148 l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  221 (659)
                      +..+++|+.|++++|.+++.    ++..+..+++|+.|++++|.++.....  .+...+..+++|++|++++|.+++.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS--ALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH--HHHHHhcccCCCCEEecCCCcCchH
Confidence            66777888888888887742    223345567888888888877643211  2344566777888888888877653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=2.5e-18  Score=185.59  Aligned_cols=245  Identities=22%  Similarity=0.379  Sum_probs=121.0

Q ss_pred             CcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccC
Q 038552           33 LQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPF  112 (659)
Q Consensus        33 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  112 (659)
                      ...|+++++.++ .+|..+.  ++|+.|++++|.++ .+|..+.  ++|++|++++|.++ .+|..+.  .+|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            344555554444 2343321  34555555555543 2333222  34555555555554 3343332  2455555555


Q ss_pred             ccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCC
Q 038552          113 NRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGT  192 (659)
Q Consensus       113 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  192 (659)
                      |.+. .+|..+.   .+|+.|++++|+++ .+|..+.  ++|+.|++++|.+++ +|..+.  .+|+.|++++|.++.. 
T Consensus       251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-  319 (754)
T PRK15370        251 NRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-  319 (754)
T ss_pred             CccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-
Confidence            5554 4554432   24555555555554 2343332  345555555555543 222221  2455555555555421 


Q ss_pred             CCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCC
Q 038552          193 ANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIP  272 (659)
Q Consensus       193 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  272 (659)
                            +..+  .++|+.|++++|.+++ +|..+.   ++|+.|++++|.++ .+|..+  .++|+.|++++|.++. +|
T Consensus       320 ------P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~---~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP  383 (754)
T PRK15370        320 ------PETL--PPGLKTLEAGENALTS-LPASLP---PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LP  383 (754)
T ss_pred             ------Cccc--cccceeccccCCcccc-CChhhc---CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CC
Confidence                  1111  1355666666665552 444332   35666666666665 344433  2466777777776663 34


Q ss_pred             ccccCCCCCcEEEccCCCCCCCCCcc----ccCCCCCcEEEccCCccc
Q 038552          273 DTIGELKNLQQLSLYNNSLQGSIPSS----LGNLTKLVELPLSYNNLQ  316 (659)
Q Consensus       273 ~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~  316 (659)
                      ..+.  .+|+.|++++|++. .+|..    ++.++.+..|++.+|+++
T Consensus       384 ~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        384 ENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            4332  35667777777766 33432    333466777777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2.3e-19  Score=180.86  Aligned_cols=282  Identities=27%  Similarity=0.316  Sum_probs=134.3

Q ss_pred             EEEccCCCCc-cccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCC
Q 038552          156 ILDLTSNQLK-GKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMT  234 (659)
Q Consensus       156 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  234 (659)
                      .|+|..+.++ ......+..+.+|+.++++++.++.....  .+...+...++++.++++.+.+.+ .+..+.       
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~--~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~-------   71 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK--ALASALRPQPSLKELCLSLNETGR-IPRGLQ-------   71 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHH--HHHHHHhhCCCceEEeccccccCC-cchHHH-------
Confidence            3555555555 22233344555677777776665431111  233344455556666666555431 111111       


Q ss_pred             EEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCC---CcEEEccCCCCCC----CCCccccCC-CCCc
Q 038552          235 DFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKN---LQQLSLYNNSLQG----SIPSSLGNL-TKLV  306 (659)
Q Consensus       235 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~  306 (659)
                                 .++..+..+++|+.|++++|.+.+..+..+..+.+   |++|++++|.+.+    .+...+..+ ++|+
T Consensus        72 -----------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~  140 (319)
T cd00116          72 -----------SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE  140 (319)
T ss_pred             -----------HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence                       12233444556666666666655444444433333   6666666666552    122233344 5666


Q ss_pred             EEEccCCccccc----cCccCcCCCCCCEEeCCCcccccc----cchhhhhcccccceeccccccccCC----Ccccccc
Q 038552          307 ELPLSYNNLQGN----IPSSLGNCQILRMFNASRNKLTGA----LPHQLLSITTLTLSLDLSNNLLNGS----LPLQVGN  374 (659)
Q Consensus       307 ~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~l~~~L~l~~n~l~~~----~~~~l~~  374 (659)
                      .|++++|.+++.    ++..+..+++|+.|++++|.+++.    ++..+...+.++ .|++++|.+.+.    ++..+..
T Consensus       141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~~~~  219 (319)
T cd00116         141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE-VLDLNNNGLTDEGASALAETLAS  219 (319)
T ss_pred             EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCC-EEeccCCccChHHHHHHHHHhcc
Confidence            666666665522    223344555666666666665532    122222333444 455555554422    1223344


Q ss_pred             CCCCceeecCCCcccccCCcccc-----CCCCCCeEECCCCCCCC----CCcccccCCCCCCEEECCCCccccc----ch
Q 038552          375 LKNLVKLDISGNQFSGVIPVTLS-----ACVSLEYLNISRNFFHG----IIPLSLSSLKSIKEFNVSSNNLSGL----IP  441 (659)
Q Consensus       375 l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~  441 (659)
                      +++|++|++++|.+++.....+.     ..+.|++|++++|.++.    .+...+..+++|+.+++++|.++..    ..
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~  299 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA  299 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence            55566666666655532221111     12456666666665541    1223344445566666666665533    22


Q ss_pred             hhhcCC-CCCCeeeCcCCc
Q 038552          442 EFLKNL-SFMEFLDLSYNH  459 (659)
Q Consensus       442 ~~l~~l-~~L~~l~l~~n~  459 (659)
                      ..+... +.|+.+++.+|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         300 ESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHhhcCCchhhcccCCCC
Confidence            333333 455555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=3.7e-19  Score=147.87  Aligned_cols=165  Identities=28%  Similarity=0.491  Sum_probs=124.0

Q ss_pred             CCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCC
Q 038552            3 LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLV   82 (659)
Q Consensus         3 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   82 (659)
                      +.++++++.|.||+|.++ .+|..+.++.+|+.|++++|++. .+|..++.++.|+.|+++-|.+ ...|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhh
Confidence            345666777788888877 66777888888888888888877 6777788888888888877776 56778888888888


Q ss_pred             EEEeecCcCC-ccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccC
Q 038552           83 DLNVGENRFS-GMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTS  161 (659)
Q Consensus        83 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  161 (659)
                      .|||.+|++. ..+|..|..++.|+.|++++|.+. -+|.+++ ++++|+.|.++.|.+. ..|..++.++.|++|.+.+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg-~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG-KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            8888887775 357777777788888888888776 7777777 7788888888877776 4677777788888888887


Q ss_pred             CCCccccccccCC
Q 038552          162 NQLKGKVSIDFSS  174 (659)
Q Consensus       162 n~l~~~~~~~l~~  174 (659)
                      |.++ .+|..+++
T Consensus       183 nrl~-vlppel~~  194 (264)
T KOG0617|consen  183 NRLT-VLPPELAN  194 (264)
T ss_pred             ceee-ecChhhhh
Confidence            7776 34444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=6.3e-19  Score=146.52  Aligned_cols=158  Identities=30%  Similarity=0.513  Sum_probs=92.9

Q ss_pred             cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552          251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR  330 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  330 (659)
                      +.++++++.|.+++|.++ .+|..+..+.+|+.|++.+|++. .+|..++.++.|+.|++.-|.+. ..|..|+.+|.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            344555666666666666 44555666666777777666666 55666666666666666666665 5666666666666


Q ss_pred             EEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCC
Q 038552          331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN  410 (659)
Q Consensus       331 ~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  410 (659)
                      .||+++|++..                        ..+|..|..++.|+-|+|+.|.+. .+|..++++++|+.|.+.+|
T Consensus       106 vldltynnl~e------------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  106 VLDLTYNNLNE------------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             hhhcccccccc------------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence            66666665541                        123344444455555555555554 44555555555555555555


Q ss_pred             CCCCCCcccccCCCCCCEEECCCCccc
Q 038552          411 FFHGIIPLSLSSLKSIKEFNVSSNNLS  437 (659)
Q Consensus       411 ~l~~~~~~~~~~l~~L~~L~l~~n~l~  437 (659)
                      .+. .+|..++.+..|++|++.+|+++
T Consensus       161 dll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  161 DLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             chh-hCcHHHHHHHHHHHHhcccceee
Confidence            554 44555555566666666666555

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=5.2e-14  Score=152.01  Aligned_cols=118  Identities=31%  Similarity=0.522  Sum_probs=103.4

Q ss_pred             CCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCc
Q 038552          377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLS  456 (659)
Q Consensus       377 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~  456 (659)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCC--CccCCcccccccCCCCCcccCCCCCCCCCC
Q 038552          457 YNHFEGEVPKK--GVFSNKTKISLQGNVKLCGGIDELHLPSCP  497 (659)
Q Consensus       457 ~n~l~~~~p~~--~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~  497 (659)
                      +|+++|.+|..  ........+++.+|+.+|+.+.   .+.|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~---l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG---LRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCC---CCCCc
Confidence            99999999964  2234556788999999997432   34564

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=1.1e-13  Score=137.00  Aligned_cols=194  Identities=28%  Similarity=0.489  Sum_probs=133.2

Q ss_pred             CCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEe
Q 038552          254 LVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFN  333 (659)
Q Consensus       254 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  333 (659)
                      +..-...|++.|.+. ++|..++.+..|+.+.+..|.+. .+|..+.++..|.+|+|+.|+++ .+|..+..++ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344455667777776 56666777777777777777776 66777777777777777777776 5666666665 77777


Q ss_pred             CCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCC
Q 038552          334 ASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH  413 (659)
Q Consensus       334 l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  413 (659)
                      +++|+++ .+|..++....+. .||.+.|.+. .+|..++++.+|+.|.+..|++. .+|.++. .-.|..||++.|+++
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~-~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLA-HLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS  224 (722)
T ss_pred             EecCccc-cCCcccccchhHH-Hhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee
Confidence            7777776 6777777666666 6777777776 56667777777777777777776 4555555 345777888888777


Q ss_pred             CCCcccccCCCCCCEEECCCCcccccchhhh---cCCCCCCeeeCcCC
Q 038552          414 GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFL---KNLSFMEFLDLSYN  458 (659)
Q Consensus       414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~l~l~~n  458 (659)
                       .+|..|.+|..|+.|-|.+|.+.. .|..+   +...-.++|+..-|
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence             677777788888888888887763 34333   22333456666555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.20  E-value=1.5e-12  Score=121.74  Aligned_cols=62  Identities=21%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             CCCcEEEccCCCCCCC----CCccccCCCCCcEEEccCCcccc----ccCccCcCCCCCCEEeCCCcccc
Q 038552          279 KNLQQLSLYNNSLQGS----IPSSLGNLTKLVELPLSYNNLQG----NIPSSLGNCQILRMFNASRNKLT  340 (659)
Q Consensus       279 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~  340 (659)
                      +.|+++...+|++...    +...|...+.|+.+.++.|.+..    .+...|..|++|+.||+.+|.++
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            4455555555554422    22234444555555555555431    12234556666666666666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=1.6e-12  Score=128.91  Aligned_cols=171  Identities=27%  Similarity=0.473  Sum_probs=106.9

Q ss_pred             CCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552            9 LIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE   88 (659)
Q Consensus         9 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   88 (659)
                      -...|++.|.+. .+|..+..|..|+.+.+..|.+. .+|.++.++..|.+|+|+.|.+ ...|..++.| -|+.|-+++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~l-pLkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCDL-PLKVLIVSN  152 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhcC-cceeEEEec
Confidence            345566666665 56666666666666666666666 5666666666666666666666 3555555555 366666666


Q ss_pred             CcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcccc
Q 038552           89 NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKV  168 (659)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  168 (659)
                      |+++ .+|..++...+|..|+.+.|.+. .+|..+. .+.+|+.|.+..|++. .+|..+..+ .|..||++.|.+. .+
T Consensus       153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YL  226 (722)
T ss_pred             Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ec
Confidence            6665 56666666666666666666665 5666665 5666666666666665 345555533 3566666666665 45


Q ss_pred             ccccCCCCCCCEEECCCCCCC
Q 038552          169 SIDFSSLKNLSWLNLEQNNLG  189 (659)
Q Consensus       169 ~~~l~~l~~L~~L~l~~n~l~  189 (659)
                      |..|.+|+.|++|.|.+|.+.
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC
Confidence            556666666666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=1.6e-11  Score=112.12  Aligned_cols=130  Identities=29%  Similarity=0.317  Sum_probs=69.1

Q ss_pred             hhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCC
Q 038552          346 QLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKS  425 (659)
Q Consensus       346 ~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  425 (659)
                      .+..+..++ ++|||+|.++ .+..+..-.|.++.|++|+|.+..+  ..+..+++|+.|||++|.++.. ...-..+.+
T Consensus       279 ~~dTWq~Lt-elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGN  353 (490)
T KOG1259|consen  279 SADTWQELT-ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGN  353 (490)
T ss_pred             ecchHhhhh-hccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcC
Confidence            334444554 5666666655 3334455556666666666666532  2255566666666666665532 122234555


Q ss_pred             CCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc--cCCCCCccCCcccccccCCC
Q 038552          426 IKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG--EVPKKGVFSNKTKISLQGNV  482 (659)
Q Consensus       426 L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~--~~p~~~~~~~~~~~~~~~n~  482 (659)
                      ++.|.|++|.+...  ..++.+-+|..||+++|++..  .+...|.++-++.+.+.+||
T Consensus       354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            66666666655432  444555556666666666543  23334455555555665555

>PLN03150 hypothetical protein; Provisional

Probab=99.14  E-value=8.9e-11  Score=127.10  Aligned_cols=110  Identities=35%  Similarity=0.526  Sum_probs=102.6

Q ss_pred             eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN  435 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  435 (659)
                      .|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|.+.+.+|..++++++|+.|+|++|.
T Consensus       422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhcCC-CCCCeeeCcCCcCcccCC
Q 038552          436 LSGLIPEFLKNL-SFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       436 l~~~~~~~l~~l-~~L~~l~l~~n~l~~~~p  465 (659)
                      ++|.+|..+... .++..+++.+|+..|..|
T Consensus       502 l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        502 LSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999988654 467899999998776555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=1.1e-10  Score=121.08  Aligned_cols=180  Identities=35%  Similarity=0.544  Sum_probs=82.1

Q ss_pred             cCCCcCeeecccccCCCCCCccccCCC-CCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCE
Q 038552          253 NLVNLIALTMEINKLHGTIPDTIGELK-NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRM  331 (659)
Q Consensus       253 ~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  331 (659)
                      .++.+..+++.+|.++ .++....... +|+.|++++|.+. .+|..++.++.|+.|++++|++. .+|...+..+.|+.
T Consensus       114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~  190 (394)
T COG4886         114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN  190 (394)
T ss_pred             cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence            3344555555555554 2233333332 5555555555554 33333455555555555555554 33333334445555


Q ss_pred             EeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCC
Q 038552          332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNF  411 (659)
Q Consensus       332 L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  411 (659)
                      |++++|++. .+|...                         .....|++|.+++|++. ..+..+.++..+..+.+.+|+
T Consensus       191 L~ls~N~i~-~l~~~~-------------------------~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~  243 (394)
T COG4886         191 LDLSGNKIS-DLPPEI-------------------------ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK  243 (394)
T ss_pred             eeccCCccc-cCchhh-------------------------hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence            555555554 333333                         33334444455544322 223334444444444444444


Q ss_pred             CCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          412 FHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       412 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      +.. .+..++.+++++.|++++|.++...+  +..+.+++.|++++|.+....|
T Consensus       244 ~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         244 LED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             eee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            442 13344444445555555555543321  4444555555555555444333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=1.4e-11  Score=115.35  Aligned_cols=198  Identities=22%  Similarity=0.264  Sum_probs=99.0

Q ss_pred             cccCCCcCeeecccccCCCCCCcc----ccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCC
Q 038552          251 IRNLVNLIALTMEINKLHGTIPDT----IGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNC  326 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  326 (659)
                      +..++.|++++||+|.+....++.    +.++..|++|+|.+|.+...--..++.  .|..|.  .       ......-
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~  156 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASK  156 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCC
Confidence            344556666666666665443332    234556666666665544111110000  000000  0       0011223


Q ss_pred             CCCCEEeCCCcccccc----cchhhhhcccccceeccccccccCC----CccccccCCCCceeecCCCccccc----CCc
Q 038552          327 QILRMFNASRNKLTGA----LPHQLLSITTLTLSLDLSNNLLNGS----LPLQVGNLKNLVKLDISGNQFSGV----IPV  394 (659)
Q Consensus       327 ~~L~~L~l~~n~l~~~----~~~~~~~~~~l~~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~  394 (659)
                      +.|+++....|++...    +...+...+.+. .+.+..|.+...    +...+..+++|+.|||..|.++..    +..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le-evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLE-EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccc-eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            4455555555555421    122233333443 455555544321    223566777777777777766522    233


Q ss_pred             cccCCCCCCeEECCCCCCCCCCcccc-----cCCCCCCEEECCCCccccc----chhhhcCCCCCCeeeCcCCcC
Q 038552          395 TLSACVSLEYLNISRNFFHGIIPLSL-----SSLKSIKEFNVSSNNLSGL----IPEFLKNLSFMEFLDLSYNHF  460 (659)
Q Consensus       395 ~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~l~l~~n~l  460 (659)
                      .+..++.|++|++++|.+......++     ...|+|+.|.+.+|.++..    +...+...|.|..|++++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            45666777777777777664432222     2357777777777776532    223344566777777777766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.7e-11  Score=118.03  Aligned_cols=209  Identities=22%  Similarity=0.215  Sum_probs=118.9

Q ss_pred             cCCCcCeeecccccCCCCCC-ccccCCCCCcEEEccCCCCCCC--CCccccCCCCCcEEEccCCccccccCc-cCcCCCC
Q 038552          253 NLVNLIALTMEINKLHGTIP-DTIGELKNLQQLSLYNNSLQGS--IPSSLGNLTKLVELPLSYNNLQGNIPS-SLGNCQI  328 (659)
Q Consensus       253 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~  328 (659)
                      ++.+|+.+.|.++....... .....|++++.|+|+.|-+...  +......+|+|+.|+++.|.+.-.... .-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45556666665554432211 2344566666666666655532  223344566677777766665422111 1123456


Q ss_pred             CCEEeCCCcccccc-cchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccC-CccccCCCCCCeEE
Q 038552          329 LRMFNASRNKLTGA-LPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVI-PVTLSACVSLEYLN  406 (659)
Q Consensus       329 L~~L~l~~n~l~~~-~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~  406 (659)
                      |+.|.++.|.++.. +-..+..++++. .|++..|.....-......+..|++|+|++|++.... -...+.++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~-~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLE-VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHH-HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            77777777776622 223344566666 6777777533333334455677888888888775332 13456777788888


Q ss_pred             CCCCCCCCC-Cccc-----ccCCCCCCEEECCCCcccccc-hhhhcCCCCCCeeeCcCCcCcc
Q 038552          407 ISRNFFHGI-IPLS-----LSSLKSIKEFNVSSNNLSGLI-PEFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       407 l~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~l~l~~n~l~~  462 (659)
                      ++.|.+... .|+.     ...+++|+.|+++.|++..-- -..+..+++|+.+.+..|.+..
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            888877644 2222     245677888888888774321 1344556667777777777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=1.3e-10  Score=120.44  Aligned_cols=199  Identities=31%  Similarity=0.508  Sum_probs=135.2

Q ss_pred             cEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCC-CcCeeecccccCCCCCCccccCCCCCcEEEcc
Q 038552          209 KVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLV-NLIALTMEINKLHGTIPDTIGELKNLQQLSLY  287 (659)
Q Consensus       209 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  287 (659)
                      ..+++..+.+.... ..+... ..++.+.+.++.++ .++....... +|+.|++++|++. .+|..++.+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~~-~~~~~~-~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSNI-SELLEL-TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccCc-hhhhcc-cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence            36777777764222 223333 36899999999998 5676777774 9999999999998 455668899999999999


Q ss_pred             CCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCC
Q 038552          288 NNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS  367 (659)
Q Consensus       288 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~  367 (659)
                      +|++. .+|...+..+.|+.|++++|.+. .+|........|+++.+++|... ..+..                     
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~---------------------  227 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS---------------------  227 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh---------------------
Confidence            99999 66665668899999999999998 66665555566888888888533 23333                     


Q ss_pred             CccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchh
Q 038552          368 LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPE  442 (659)
Q Consensus       368 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (659)
                          +..+.++..+.+.+|++.. .+..++.++++++|++++|.++...+  ++.+.+++.|++++|.++...|.
T Consensus       228 ----~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         228 ----LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ----hhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence                3444444445555555442 24445555566666666666653322  55566666666666666554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=2.7e-11  Score=110.75  Aligned_cols=133  Identities=26%  Similarity=0.288  Sum_probs=105.7

Q ss_pred             CCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCe
Q 038552          325 NCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEY  404 (659)
Q Consensus       325 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  404 (659)
                      ....|+.+|+++|.++ .+.+++.-.+.++ .|++|+|.+...  ..+..+++|+.||||+|.++. +...-..+.++++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir-~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLR-RLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhcccee-EEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence            3456888888888887 6677777777777 788999988744  348889999999999999874 3334456788999


Q ss_pred             EECCCCCCCCCCcccccCCCCCCEEECCCCcccccch-hhhcCCCCCCeeeCcCCcCcccC
Q 038552          405 LNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIP-EFLKNLSFMEFLDLSYNHFEGEV  464 (659)
Q Consensus       405 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~l~l~~n~l~~~~  464 (659)
                      |+|++|.+...  ..++.+-+|..||+++|++..... ..++++|-|+.+.+.+|++.+.+
T Consensus       357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            99999998743  467788899999999999976532 56789999999999999998644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=4.9e-11  Score=114.89  Aligned_cols=161  Identities=20%  Similarity=0.219  Sum_probs=83.4

Q ss_pred             CCCCCcEEeccccCCCcccc--ccccCCCCCcEEEccCCccCccc--ccccCCCCCCCEEEeecCcCCccCc-ccccCCC
Q 038552           29 SLLNLQTLAIDFNYLTGQLP--DFVGNLSALKVFYIIGNSLGGKI--PTTLGLLRNLVDLNVGENRFSGMFP-RSICNIS  103 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~  103 (659)
                      ++.+|+.+.+.++.+. ..+  .....|++++.|+|++|-+..-.  ......|++|+.|+++.|.+..... ..-..++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4556666666665554 222  24456666666666666543211  1223556666666666666541111 1112455


Q ss_pred             CCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcccc-ccccCCCCCCCEEE
Q 038552          104 SLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKV-SIDFSSLKNLSWLN  182 (659)
Q Consensus       104 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~  182 (659)
                      +|+.|.++.|.++..--..+...+|+|+.|++.+|.....-......+..|++|||++|++-... ....+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            66666666666652222223335666666666666422222233445556666666666654322 12345566666666


Q ss_pred             CCCCCCCC
Q 038552          183 LEQNNLGM  190 (659)
Q Consensus       183 l~~n~l~~  190 (659)
                      ++.+.+..
T Consensus       278 ls~tgi~s  285 (505)
T KOG3207|consen  278 LSSTGIAS  285 (505)
T ss_pred             ccccCcch
Confidence            66665544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=2.1e-10  Score=126.73  Aligned_cols=127  Identities=25%  Similarity=0.367  Sum_probs=72.1

Q ss_pred             CCCEEEccCCcccccCchhhcCCCCCcEEeccccC--CCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEE
Q 038552            8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNY--LTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLN   85 (659)
Q Consensus         8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   85 (659)
                      ..+.+.+-+|.+. .++... .++.|++|-+..|.  +....++.|..++.|++|||++|.-.+.+|..++.|-+||+|+
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            3455555555443 223322 23456666666664  3323333456666677777766654456666666666777777


Q ss_pred             eecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCC
Q 038552           86 VGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGN  138 (659)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  138 (659)
                      ++++.+. .+|..++++..|.+|++..+.....+ ..+...+.+|++|.+...
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence            6666666 56666666666666666655443233 233324666666666544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2.7e-10  Score=100.30  Aligned_cols=127  Identities=24%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             CCCCCcEEeccccCCCcccccccc-CCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccc-cCCCCCC
Q 038552           29 SLLNLQTLAIDFNYLTGQLPDFVG-NLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSI-CNISSLE  106 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~  106 (659)
                      ++.+++.|+|.+|.|.. + +.++ .+.+|+.|++++|.+...  +.+..+++|++|++++|.++. +...+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            44455566666665552 2 1233 355566666666655322  235555666666666666552 22223 2455666


Q ss_pred             EEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccC---hhccCCCCCCEEEcc
Q 038552          107 WIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIP---NSLSNASNLEILDLT  160 (659)
Q Consensus       107 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~  160 (659)
                      +|++++|.+..--.......+++|+.|++.+|.++....   ..+..+|+|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            666666655421111111245666666666666553211   135566777776654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=2.9e-10  Score=100.13  Aligned_cols=83  Identities=24%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             cccCCCCceeecCCCcccccCCccc-cCCCCCCeEECCCCCCCCCC-cccccCCCCCCEEECCCCcccccc---hhhhcC
Q 038552          372 VGNLKNLVKLDISGNQFSGVIPVTL-SACVSLEYLNISRNFFHGII-PLSLSSLKSIKEFNVSSNNLSGLI---PEFLKN  446 (659)
Q Consensus       372 l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~  446 (659)
                      +..++.|++|++++|.++.. ...+ ..+++|++|++++|++.... -..+..+++|+.|++.+|+++...   ...+..
T Consensus        60 l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~  138 (175)
T PF14580_consen   60 LPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK  138 (175)
T ss_dssp             ----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred             ccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence            44456666666666666633 2223 34666666666666665321 134556677777777777765431   123456


Q ss_pred             CCCCCeeeC
Q 038552          447 LSFMEFLDL  455 (659)
Q Consensus       447 l~~L~~l~l  455 (659)
                      +|+|+.||-
T Consensus       139 lP~Lk~LD~  147 (175)
T PF14580_consen  139 LPSLKVLDG  147 (175)
T ss_dssp             -TT-SEETT
T ss_pred             cChhheeCC
Confidence            677766654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.98  E-value=5.4e-10  Score=123.52  Aligned_cols=128  Identities=22%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             CCCcEEeccccCCCccccccccCCCCCcEEEccCCc--cCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038552           31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS--LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWI  108 (659)
Q Consensus        31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  108 (659)
                      ...+...+-+|.+. .++.. ..++.|++|-+.+|.  +....+..|..++.|++|||++|.--+.+|..++++-+||+|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            34555555555543 22222 223356666666654  322223335566666666666655445666666666666666


Q ss_pred             eccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCC
Q 038552          109 YLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSN  162 (659)
Q Consensus       109 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  162 (659)
                      ++++..+. .+|.++. ++..|.+|++..+.....+|.....+++|++|.+...
T Consensus       601 ~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            66666665 6666665 5666666666655544444444455666666655443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2.2e-09  Score=77.50  Aligned_cols=59  Identities=34%  Similarity=0.517  Sum_probs=31.1

Q ss_pred             CCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552          377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN  435 (659)
Q Consensus       377 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  435 (659)
                      +|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444455555555555555555554444455555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=2.6e-09  Score=77.14  Aligned_cols=61  Identities=36%  Similarity=0.574  Sum_probs=57.2

Q ss_pred             CCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcC
Q 038552          400 VSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHF  460 (659)
Q Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l  460 (659)
                      ++|++|++++|++....+..|.++++|+.|++++|.++...|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999988888999999999999999999988889999999999999999975

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.80  E-value=1.2e-10  Score=118.83  Aligned_cols=123  Identities=28%  Similarity=0.316  Sum_probs=51.4

Q ss_pred             eccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552          357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL  436 (659)
Q Consensus       357 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  436 (659)
                      .++++|.+. .+..++.-++.|+.|+|++|+++...  .+..|+.|++|||++|.+....--...++. |+.|++++|.+
T Consensus       169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l  244 (1096)
T KOG1859|consen  169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL  244 (1096)
T ss_pred             hhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence            344444443 22233444444444455555444332  344444455555555544422211222232 44555555544


Q ss_pred             cccchhhhcCCCCCCeeeCcCCcCcccCC--CCCccCCcccccccCCCCCc
Q 038552          437 SGLIPEFLKNLSFMEFLDLSYNHFEGEVP--KKGVFSNKTKISLQGNVKLC  485 (659)
Q Consensus       437 ~~~~~~~l~~l~~L~~l~l~~n~l~~~~p--~~~~~~~~~~~~~~~n~~lc  485 (659)
                      +..  ..+.++.+|+.||+++|-+++.-.  ..+.+..+..+.+.|||--|
T Consensus       245 ~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  245 TTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             Hhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            432  334444445555555554443111  11223334444455554444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.76  E-value=1.3e-09  Score=113.00  Aligned_cols=57  Identities=30%  Similarity=0.404  Sum_probs=27.2

Q ss_pred             CceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccc
Q 038552          378 LVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS  437 (659)
Q Consensus       378 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  437 (659)
                      |+.+++++|++.. .+..+..+..+..|++.+|++...  ..+...+.+..+....|.+.
T Consensus       234 L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  234 LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             HHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            5555555555542 223344455555555555555432  12333444444555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=2.8e-09  Score=110.54  Aligned_cols=214  Identities=30%  Similarity=0.326  Sum_probs=139.6

Q ss_pred             CCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccC
Q 038552          233 MTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSY  312 (659)
Q Consensus       233 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  312 (659)
                      +..+.+..|.+.. +-..++.+++|..+++.+|.+..... .+..+++|++|++++|.|....+  +..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheecc
Confidence            3344444454442 22335677788888888888764322 25678888888888888874432  56667788888888


Q ss_pred             CccccccCccCcCCCCCCEEeCCCcccccccc-hhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552          313 NNLQGNIPSSLGNCQILRMFNASRNKLTGALP-HQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV  391 (659)
Q Consensus       313 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  391 (659)
                      |.+.. + ..+..++.|+.+++++|++...-+ . ...+..+. .+++.+|.+...  ..+..+..+..+++..|.++..
T Consensus       150 N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~-~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  150 NLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLE-ELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             Ccchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchH-HHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence            88873 2 245557888888888888874333 1 45566666 678888877533  2344445555667788877643


Q ss_pred             CCccccCCCC--CCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552          392 IPVTLSACVS--LEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       392 ~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      .+  +..+..  |+.+++++|++.. .+..+..+..+..+++.+|.+...  ..+...+.+..+....|++.
T Consensus       224 ~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  224 EG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            22  223333  7888888888873 334567778888888888887655  34555666677777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=1.2e-09  Score=111.83  Aligned_cols=128  Identities=29%  Similarity=0.293  Sum_probs=100.3

Q ss_pred             CCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEEC
Q 038552          328 ILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNI  407 (659)
Q Consensus       328 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  407 (659)
                      .|...+++.|.+. ....++.-++.++ .|+|++|++....  .+..++.|++|||++|.+....--....|. |+.|++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale-~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALE-SLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhh-hhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            4677788888887 5667777778887 8999999987553  788999999999999999744333444555 999999


Q ss_pred             CCCCCCCCCcccccCCCCCCEEECCCCcccccch-hhhcCCCCCCeeeCcCCcCcc
Q 038552          408 SRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIP-EFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       408 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~l~l~~n~l~~  462 (659)
                      ++|.++..  ..+.++.+|+.||+++|-+.+.-. ..+..+..|..|++.+|++.+
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            99988744  357788999999999998877532 445667778999999999965

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.59  E-value=7.3e-08  Score=96.92  Aligned_cols=68  Identities=29%  Similarity=0.389  Sum_probs=57.1

Q ss_pred             cCCChHHHHHHHhccc-cccccccccc-hhhhccccchhhhhHHHHHHHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHH
Q 038552          572 EGLTLHEYAKMALQEK-VMEIIDPSLL-MDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCH  649 (659)
Q Consensus       572 ~~~~l~~~~~~~~~~~-~~~i~d~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~  649 (659)
                      +..++++|++..+.++ +.+|+||++. +.+..             .+++.+++++|+.|++++|.+||+|.+||++|+.
T Consensus       285 ~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~-------------~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~  351 (361)
T KOG1187|consen  285 GELSLVEWAKPLLEEGKLREIVDPRLKEGEYPD-------------EKEVKKLAELALRCLRPDPKERPTMSQVVKELEG  351 (361)
T ss_pred             ccccHHHHHHHHHHCcchhheeCCCccCCCCCh-------------HHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHh
Confidence            4556999999999986 9999999997 33332             0578899999999999999999999999999976


Q ss_pred             HHH
Q 038552          650 TRE  652 (659)
Q Consensus       650 ~~~  652 (659)
                      +..
T Consensus       352 ~~~  354 (361)
T KOG1187|consen  352 ILS  354 (361)
T ss_pred             hcc
Confidence            643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=6e-09  Score=95.60  Aligned_cols=158  Identities=22%  Similarity=0.244  Sum_probs=91.0

Q ss_pred             CCCcEEEccCCcCCcc-cChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCC-CCCCCCCCccccccccCC
Q 038552          128 PNLKALAIGGNNFFGS-IPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN-LGMGTANDLDFVTFLTNC  205 (659)
Q Consensus       128 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~  205 (659)
                      +.|+++||+...++.. ...-+..|.+|+.|.+.++.+.+.+...+.+-.+|+.|+++.++ ++.     ...-..+.+|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-----n~~~ll~~sc  259 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-----NALQLLLSSC  259 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-----hHHHHHHHhh
Confidence            3578888877766522 22346678888888888888887777778888888888887653 221     1333456788


Q ss_pred             CCCcEEEccCCcccccc-ChhHHhccccCCEEEcccCccc---ccCCcccccCCCcCeeecccc-cCCCCCCccccCCCC
Q 038552          206 SSLKVISLYANQFGGEL-PHSIANLSSTMTDFRIGANQIS---GTIPPGIRNLVNLIALTMEIN-KLHGTIPDTIGELKN  280 (659)
Q Consensus       206 ~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~  280 (659)
                      +.|..|++++|.+..+. .-.+.....+++.|+++++.-.   ..+..-...+++|.+|||++| .++......|..++-
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            88888888888654332 2233444556777777665211   011111234555555555554 222222223334444


Q ss_pred             CcEEEccCCC
Q 038552          281 LQQLSLYNNS  290 (659)
Q Consensus       281 L~~L~l~~n~  290 (659)
                      |++|.++.|.
T Consensus       340 L~~lSlsRCY  349 (419)
T KOG2120|consen  340 LQHLSLSRCY  349 (419)
T ss_pred             heeeehhhhc
Confidence            4555444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=3.1e-08  Score=91.06  Aligned_cols=180  Identities=17%  Similarity=0.167  Sum_probs=113.5

Q ss_pred             CCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCC-Cccc-cccccCCCCCCCEE
Q 038552          104 SLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ-LKGK-VSIDFSSLKNLSWL  181 (659)
Q Consensus       104 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L  181 (659)
                      .|+++||++..++..--..+...+.+|+.|.+.++++...+-..+++-..|+.|+++.++ ++.. ...-+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            578888887777644444555567888888888888877777778888888888888763 3211 12235678888888


Q ss_pred             ECCCCCCCCCCCCCccccccccCCCCCcEEEccCCc--cccccChhHHhccccCCEEEcccCc-ccccCCcccccCCCcC
Q 038552          182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQ--FGGELPHSIANLSSTMTDFRIGANQ-ISGTIPPGIRNLVNLI  258 (659)
Q Consensus       182 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~  258 (659)
                      +++++.+......  ....  .--++|+.|+++++.  +...-...+..-.+++..|++++|. ++......+.+++.|+
T Consensus       266 NlsWc~l~~~~Vt--v~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  266 NLSWCFLFTEKVT--VAVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             CchHhhccchhhh--HHHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            8888866542110  0111  112567778887763  2222223344445578888888774 3333334567888899


Q ss_pred             eeecccccCCCCCCc---cccCCCCCcEEEccCC
Q 038552          259 ALTMEINKLHGTIPD---TIGELKNLQQLSLYNN  289 (659)
Q Consensus       259 ~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n  289 (659)
                      +|.++.|..  .+|+   .+...|+|.+|++.++
T Consensus       342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            999988854  3444   3455677777776654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=3.9e-07  Score=82.85  Aligned_cols=120  Identities=23%  Similarity=0.320  Sum_probs=61.7

Q ss_pred             cccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccc---
Q 038552          199 VTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTI---  275 (659)
Q Consensus       199 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---  275 (659)
                      ...+-.|++|+..+|+.|.|....|..+..+                     ++.-+.|++|.|++|.+.-.-..-+   
T Consensus        85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~---------------------is~~t~l~HL~l~NnGlGp~aG~rigka  143 (388)
T COG5238          85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDL---------------------ISSSTDLVHLKLNNNGLGPIAGGRIGKA  143 (388)
T ss_pred             HHHHhcCCcceeeeccccccCcccchHHHHH---------------------HhcCCCceeEEeecCCCCccchhHHHHH
Confidence            3456677788888888777776666655442                     2344455555555554431111111   


Q ss_pred             ----------cCCCCCcEEEccCCCCCCCCCc-----cccCCCCCcEEEccCCccccccC-----ccCcCCCCCCEEeCC
Q 038552          276 ----------GELKNLQQLSLYNNSLQGSIPS-----SLGNLTKLVELPLSYNNLQGNIP-----SSLGNCQILRMFNAS  335 (659)
Q Consensus       276 ----------~~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~  335 (659)
                                ..-|.|+.+....|++.. .+.     .+..-..|+++.+..|.+....-     ..+..+.+|+.||+.
T Consensus       144 l~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlq  222 (388)
T COG5238         144 LFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQ  222 (388)
T ss_pred             HHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecc
Confidence                      123556666666666541 111     11122456666666665442110     122345666777777


Q ss_pred             Ccccc
Q 038552          336 RNKLT  340 (659)
Q Consensus       336 ~n~l~  340 (659)
                      +|-++
T Consensus       223 DNtft  227 (388)
T COG5238         223 DNTFT  227 (388)
T ss_pred             ccchh
Confidence            66665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=6.9e-07  Score=82.37  Aligned_cols=186  Identities=19%  Similarity=0.142  Sum_probs=90.9

Q ss_pred             CCCCCcEEeccccCCCc--cccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCc-cCcccccCCCCC
Q 038552           29 SLLNLQTLAIDFNYLTG--QLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSG-MFPRSICNISSL  105 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L  105 (659)
                      .+..++.+||.+|.++.  .+...+.++|.|++|+|+.|.+...+-..-..+.+|++|-|.+..+.- .....+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45566777777776653  233344567777777777776643322111345667777776665541 233345556666


Q ss_pred             CEEeccCccccccChH--H-HhcCCCCCcEEEccCCcCCc--ccChhccCCCCCCEEEccCCCCccc-cccccCCCCCCC
Q 038552          106 EWIYLPFNRFSGSLPL--D-IAVNLPNLKALAIGGNNFFG--SIPNSLSNASNLEILDLTSNQLKGK-VSIDFSSLKNLS  179 (659)
Q Consensus       106 ~~L~l~~n~~~~~~~~--~-~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~  179 (659)
                      +.|.++.|.+. .+..  + +..--+.++++.+-.|....  .+...-.-++++..+-+..|.+... ....+..++.+.
T Consensus       149 telHmS~N~~r-q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  149 TELHMSDNSLR-QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhccchhh-hhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            66666666432 1100  0 00001233344433332210  0000112234455555555544322 122344455555


Q ss_pred             EEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCcccc
Q 038552          180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGG  220 (659)
Q Consensus       180 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  220 (659)
                      -|+|..+++.     .|+..+.+..+++|..|.+.++++.+
T Consensus       228 ~LnL~~~~id-----swasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  228 CLNLGANNID-----SWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhhhcccccc-----cHHHHHHHcCCchhheeeccCCcccc
Confidence            6666666553     23555666666667766666666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=1.7e-07  Score=85.17  Aligned_cols=66  Identities=23%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             cccCCCcCeeecccccCCCCC----CccccCCCCCcEEEccCCCCCCCCCccc------cCCCCCcEEEccCCccc
Q 038552          251 IRNLVNLIALTMEINKLHGTI----PDTIGELKNLQQLSLYNNSLQGSIPSSL------GNLTKLVELPLSYNNLQ  316 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~  316 (659)
                      +..+.+|+.||+.+|.++-..    ...+...+.|+.|.+.+|-++......+      ...|+|..|...+|...
T Consensus       210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            445566666666666654322    1233344556666666665553322211      12455555555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.20  E-value=1.6e-07  Score=76.13  Aligned_cols=84  Identities=21%  Similarity=0.281  Sum_probs=41.3

Q ss_pred             CCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeC
Q 038552          376 KNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDL  455 (659)
Q Consensus       376 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l  455 (659)
                      ..|+..+|++|.+....+..-...+.+++|++++|.++ .+|..+..++.|+.|+++.|.+.. .|..+..+.++-.|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcC
Confidence            34444455555554322222223345555555555555 344445555555555555555542 2444444555555555


Q ss_pred             cCCcCc
Q 038552          456 SYNHFE  461 (659)
Q Consensus       456 ~~n~l~  461 (659)
                      .+|.+.
T Consensus       131 ~~na~~  136 (177)
T KOG4579|consen  131 PENARA  136 (177)
T ss_pred             CCCccc
Confidence            555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=8.5e-07  Score=81.79  Aligned_cols=187  Identities=21%  Similarity=0.214  Sum_probs=86.8

Q ss_pred             CCCcCeeecccccCCCC--CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccc-cCccCcCCCCCC
Q 038552          254 LVNLIALTMEINKLHGT--IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGN-IPSSLGNCQILR  330 (659)
Q Consensus       254 l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~  330 (659)
                      ++.++.+||.+|.++..  +...+.++|.|+.|+++.|++...+-..-....+|+.|.|.+..+... ....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            34455555555555431  222344566666677766666533222113445666666666655432 223445566666


Q ss_pred             EEeCCCcccccccchhhhhcccccceeccccccccCCCc--cccccCCCCceeecCCCcccccCCccccCCCCCCeEECC
Q 038552          331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLP--LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNIS  408 (659)
Q Consensus       331 ~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  408 (659)
                      .|.++.|.+.               .+++..|.....-+  ..+...+.+..+.++-|++...       ++++..+.+.
T Consensus       150 elHmS~N~~r---------------q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~  207 (418)
T KOG2982|consen  150 ELHMSDNSLR---------------QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVC  207 (418)
T ss_pred             hhhhccchhh---------------hhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeee
Confidence            6666666443               22333332221111  0111222222222233333222       2345555555


Q ss_pred             CCCCCCC-CcccccCCCCCCEEECCCCcccccc-hhhhcCCCCCCeeeCcCCcCcc
Q 038552          409 RNFFHGI-IPLSLSSLKSIKEFNVSSNNLSGLI-PEFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       409 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~l~l~~n~l~~  462 (659)
                      .|.+... ....+..++.+..|+|+.|++..-- -+.+..++.|..|.+++|++..
T Consensus       208 e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  208 EGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            5554322 1223344455556666666653211 1445556666666666666643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=5e-07  Score=73.41  Aligned_cols=105  Identities=24%  Similarity=0.286  Sum_probs=68.7

Q ss_pred             cCeeecccccCCCCCCcc---ccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEe
Q 038552          257 LIALTMEINKLHGTIPDT---IGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFN  333 (659)
Q Consensus       257 L~~L~l~~n~l~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  333 (659)
                      +..++|+.|++. .+++.   +.....|..++|++|.+....+..-..++.++.|++++|.++ .+|..+..++.|+.++
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            344566666553 22332   334556667788888887433333344567788888888887 6777788888888888


Q ss_pred             CCCcccccccchhhhhcccccceecccccccc
Q 038552          334 ASRNKLTGALPHQLLSITTLTLSLDLSNNLLN  365 (659)
Q Consensus       334 l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~  365 (659)
                      ++.|.+. ..|..+..+.++. .|+..+|.+.
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~-~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLD-MLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHHHHHhHH-HhcCCCCccc
Confidence            8888877 5666666666666 6777777665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=3.9e-05  Score=76.47  Aligned_cols=57  Identities=16%  Similarity=0.180  Sum_probs=29.6

Q ss_pred             cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCC
Q 038552          251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYN  313 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  313 (659)
                      +..+..+..|++++|.+. .+|.   -..+|+.|.+++|.-...+|..+  .++|+.|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            334566666777666555 2331   12356666666644333444433  235666666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.83  E-value=6e-06  Score=89.50  Aligned_cols=119  Identities=19%  Similarity=0.300  Sum_probs=51.8

Q ss_pred             CCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcc-ccccccCCCCCCCE
Q 038552          102 ISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG-KVSIDFSSLKNLSW  180 (659)
Q Consensus       102 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~  180 (659)
                      +|.|+.|.+.+-.+...--..+...+++|..||+++++++..  .+++++++|++|.+.+-.+.. ..-.++.+|++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            455555555544332221122333455555555555555432  445555555555555433321 11123445555555


Q ss_pred             EECCCCCCCCCCCCCccccccccCCCCCcEEEccCCcccccc
Q 038552          181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGEL  222 (659)
Q Consensus       181 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  222 (659)
                      ||++.........-...+.+.-..+|+|+.||.+++.+.+.+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            555554332211000011122223455555555555544433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=3.3e-05  Score=50.76  Aligned_cols=35  Identities=37%  Similarity=0.541  Sum_probs=13.3

Q ss_pred             CCeEECCCCCCCCCCcccccCCCCCCEEECCCCccc
Q 038552          402 LEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS  437 (659)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  437 (659)
                      |++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            344444444444 22223444444444444444443

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.76  E-value=8.3e-07  Score=85.82  Aligned_cols=136  Identities=21%  Similarity=0.170  Sum_probs=60.5

Q ss_pred             CCCCCcEEEccCCc-cccccChhHHhccccCCEEEcccCc-ccccCCccc-ccCCCcCeeecccccCCC--CCCccccCC
Q 038552          204 NCSSLKVISLYANQ-FGGELPHSIANLSSTMTDFRIGANQ-ISGTIPPGI-RNLVNLIALTMEINKLHG--TIPDTIGEL  278 (659)
Q Consensus       204 ~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~n~l~~--~~~~~~~~~  278 (659)
                      .|..|+.|+.+++. +++.....++....+|+.+.+..|+ |+..-...+ .+++.|+.+++..+....  .+...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            34455555554442 2222222333333455555555553 221111111 244556666665553321  111222345


Q ss_pred             CCCcEEEccCCCCCCCC-----CccccCCCCCcEEEccCCcccc-ccCccCcCCCCCCEEeCCCccc
Q 038552          279 KNLQQLSLYNNSLQGSI-----PSSLGNLTKLVELPLSYNNLQG-NIPSSLGNCQILRMFNASRNKL  339 (659)
Q Consensus       279 ~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l  339 (659)
                      +.|+.+.+++|......     ...-..+..|+.+.+++++... ..-+.+..+++|+.+++-+++.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            66666666655433111     1122334566666666665432 2223445566666666665543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.74  E-value=9e-05  Score=63.11  Aligned_cols=122  Identities=18%  Similarity=0.187  Sum_probs=40.6

Q ss_pred             hhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCC
Q 038552           26 EIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSL  105 (659)
Q Consensus        26 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  105 (659)
                      +|.++.+|+.+.+.. .+......+|.++++|+.+.+.++ +.......|.++++|+.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344444555555442 233333344455545555555443 3223333445554555555533 2222233344445555


Q ss_pred             CEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCC
Q 038552          106 EWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNL  154 (659)
Q Consensus       106 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  154 (659)
                      +.+.+..+ +. .++...+... +|+.+.+.. .+..+....|.++++|
T Consensus        84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555433 32 3444444333 555555543 2222333444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=3.7e-05  Score=50.51  Aligned_cols=36  Identities=31%  Similarity=0.442  Sum_probs=14.7

Q ss_pred             CCcEEEccCCccCcccccccCCCCCCCEEEeecCcCC
Q 038552           56 ALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFS   92 (659)
Q Consensus        56 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   92 (659)
                      +|++|++++|.+. .+|..+++|++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444442 23333444444444444444443

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.69  E-value=1.7e-06  Score=83.78  Aligned_cols=110  Identities=20%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             ccCCCcCeeeccccc-CCCCCCccc-cCCCCCcEEEccCCCCCC--CCCccccCCCCCcEEEccCCcccccc-----Ccc
Q 038552          252 RNLVNLIALTMEINK-LHGTIPDTI-GELKNLQQLSLYNNSLQG--SIPSSLGNLTKLVELPLSYNNLQGNI-----PSS  322 (659)
Q Consensus       252 ~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~  322 (659)
                      .+..+|+.+.++.++ |+..--..+ .+++.|+.+++..+....  .+...-.+++.|+.+.+++|......     ...
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            345666666666653 222111111 245566666666654331  12222234666666666665433111     111


Q ss_pred             CcCCCCCCEEeCCCcccc-cccchhhhhcccccceeccccc
Q 038552          323 LGNCQILRMFNASRNKLT-GALPHQLLSITTLTLSLDLSNN  362 (659)
Q Consensus       323 ~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~~L~l~~n  362 (659)
                      -..+..|..+.++++..+ ...-+.+..++.++ .+++-++
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le-ri~l~~~  436 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLE-RIELIDC  436 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccc-eeeeech
Confidence            233455666666666543 12223334444444 3444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=0.00018  Score=71.84  Aligned_cols=134  Identities=19%  Similarity=0.282  Sum_probs=61.8

Q ss_pred             CCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccce
Q 038552          277 ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS  356 (659)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~  356 (659)
                      .+.++..|++++|.+. .+|.   -.++|++|.+++|.-...+|..+.  ++|+.|++++|.....+|..      +. .
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le-~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VR-S  116 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cc-e
Confidence            3456666666666555 3341   123466666665443334443332  35666666666222233332      22 3


Q ss_pred             ecccccccc--CCCccccccCCCCceeecCCCc-ccc-cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECC
Q 038552          357 LDLSNNLLN--GSLPLQVGNLKNLVKLDISGNQ-FSG-VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVS  432 (659)
Q Consensus       357 L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  432 (659)
                      |+++.+...  +.+|      ++|+.|.+.+++ ... .+|..  -.++|++|++++|... ..|..+.  .+|+.|+++
T Consensus       117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             EEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            444443321  1222      245555554322 110 01111  1246777777776654 3333333  467777776


Q ss_pred             CC
Q 038552          433 SN  434 (659)
Q Consensus       433 ~n  434 (659)
                      .|
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            65

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.62  E-value=0.00017  Score=61.32  Aligned_cols=105  Identities=17%  Similarity=0.182  Sum_probs=39.6

Q ss_pred             CCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCC
Q 038552            3 LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLV   82 (659)
Q Consensus         3 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   82 (659)
                      |.++++|+.+.+.. .+......+|.++.+|+.+.+..+ +......+|.++++|+.+.+.+ .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            44555555555543 233333444555555555555443 3333334455555555555543 22222233444555555


Q ss_pred             EEEeecCcCCccCcccccCCCCCCEEeccC
Q 038552           83 DLNVGENRFSGMFPRSICNISSLEWIYLPF  112 (659)
Q Consensus        83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  112 (659)
                      .+.+..+ +.......|.++ +|+.+.+..
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            5555433 332333344444 555555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.57  E-value=0.00016  Score=63.42  Aligned_cols=58  Identities=21%  Similarity=0.209  Sum_probs=27.2

Q ss_pred             CcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCcccc
Q 038552           57 LKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFS  116 (659)
Q Consensus        57 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  116 (659)
                      ...++|++|.+.  ..+.|..+++|.+|.+++|+|+..-|.--.-+++|+.|.|.+|++.
T Consensus        44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            344555555542  1233455555555555555555333322222344555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.56  E-value=3.4e-05  Score=83.79  Aligned_cols=135  Identities=20%  Similarity=0.274  Sum_probs=67.2

Q ss_pred             CCCcEEeccccCCCc-cccccc-cCCCCCcEEEccCCccCc-ccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCE
Q 038552           31 LNLQTLAIDFNYLTG-QLPDFV-GNLSALKVFYIIGNSLGG-KIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEW  107 (659)
Q Consensus        31 ~~L~~L~ls~~~~~~-~~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  107 (659)
                      .+|+.|++++..... .-|..+ ..+|+|+.|.+.+-.+.. ..-.-..++++|..||+++++++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            356666665543211 111112 235666666666544311 1112234556666666666666532  45566666666


Q ss_pred             EeccCccccc-cChHHHhcCCCCCcEEEccCCcCCccc------ChhccCCCCCCEEEccCCCCcccc
Q 038552          108 IYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSI------PNSLSNASNLEILDLTSNQLKGKV  168 (659)
Q Consensus       108 L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~l~~l~~L~~L~l~~n~l~~~~  168 (659)
                      |.+.+=.+.. .--.+++ .+++|+.||++........      -+.-..+|+|+.||.++..+.+..
T Consensus       200 L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            6665444431 1113444 5666666666655433211      012234677888887776665443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.51  E-value=0.00016  Score=63.50  Aligned_cols=127  Identities=21%  Similarity=0.221  Sum_probs=81.6

Q ss_pred             CEEEccCCcccccCchhhcC-CCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552           10 IELRVSKNKLEGQIPEEIGS-LLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE   88 (659)
Q Consensus        10 ~~L~ls~n~~~~~~~~~~~~-~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   88 (659)
                      ++++|.+..+.-  .+.++. ..+.-.+||++|.+...  ..|..++.|.+|.+++|.|+...|.--..+++|+.|.|.+
T Consensus        22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccc--hhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            455555555441  111221 23567788888887632  3477788888888888888766665555677888888888


Q ss_pred             CcCCcc-CcccccCCCCCCEEeccCccccccCh--HHHhcCCCCCcEEEccCCcC
Q 038552           89 NRFSGM-FPRSICNISSLEWIYLPFNRFSGSLP--LDIAVNLPNLKALAIGGNNF  140 (659)
Q Consensus        89 n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~~  140 (659)
                      |++... --.-+..|++|++|.+-+|+.+..--  ..+...+++|+.||+..-..
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            887622 11245667888888888887762111  12233678888888866543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.76  E-value=0.001  Score=61.23  Aligned_cols=65  Identities=22%  Similarity=0.192  Sum_probs=32.5

Q ss_pred             hhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCC--ccCcccccccCCCCCCCEEEeecCcCC
Q 038552           26 EIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGN--SLGGKIPTTLGLLRNLVDLNVGENRFS   92 (659)
Q Consensus        26 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~   92 (659)
                      ....+..|+.|++.+..++..  ..|..+++|+.|.++.|  .+.+.++--...+++|++|+++.|.+.
T Consensus        38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            333444555555555554422  22445556666666655  333333333344566666666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=7.6e-05  Score=68.59  Aligned_cols=87  Identities=20%  Similarity=0.161  Sum_probs=48.6

Q ss_pred             CCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCcc-CcccccCCCCCCEE
Q 038552           30 LLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGM-FPRSICNISSLEWI  108 (659)
Q Consensus        30 ~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  108 (659)
                      +.+.+.|+..+|.++++  ....+++.|++|.|+-|.|+...  .|..|++|+.|.|..|.|... .-..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34556666666666532  23456666666666666664332  356666666666666665421 11234556666666


Q ss_pred             eccCccccccCh
Q 038552          109 YLPFNRFSGSLP  120 (659)
Q Consensus       109 ~l~~n~~~~~~~  120 (659)
                      +|..|+-.|.-+
T Consensus        94 WL~ENPCc~~ag  105 (388)
T KOG2123|consen   94 WLDENPCCGEAG  105 (388)
T ss_pred             hhccCCcccccc
Confidence            666665554433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.29  E-value=0.0033  Score=57.89  Aligned_cols=66  Identities=26%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             cccCCCCceeecCCC--cccccCCccccCCCCCCeEECCCCCCCCC-CcccccCCCCCCEEECCCCccc
Q 038552          372 VGNLKNLVKLDISGN--QFSGVIPVTLSACVSLEYLNISRNFFHGI-IPLSLSSLKSIKEFNVSSNNLS  437 (659)
Q Consensus       372 l~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~  437 (659)
                      +..+++|++|.+|.|  ++++..+.....+++|++|++++|++... --..+..+.+|..|++.+|.-+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            334455555555555  33333333333445555555555554420 0012233444445555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.00025  Score=65.27  Aligned_cols=95  Identities=22%  Similarity=0.258  Sum_probs=68.3

Q ss_pred             eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCc-ccccCCCCCCEEECCCC
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP-LSLSSLKSIKEFNVSSN  434 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n  434 (659)
                      .|++.++.++++  .-...++.|+.|.||=|.|+..  +.+..|+.|++|+|..|.|..... .-+.++++|+.|.|..|
T Consensus        23 KLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   23 KLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             hhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            677778877643  2346788888899998888754  347788888899998888874321 24577888888888888


Q ss_pred             cccccch-----hhhcCCCCCCeee
Q 038552          435 NLSGLIP-----EFLKNLSFMEFLD  454 (659)
Q Consensus       435 ~l~~~~~-----~~l~~l~~L~~l~  454 (659)
                      +=.|.-+     ..+.-+|+|+.||
T Consensus        99 PCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   99 PCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CcccccchhHHHHHHHHcccchhcc
Confidence            7766543     3456677777775

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.11  E-value=2.2e-05  Score=81.46  Aligned_cols=168  Identities=22%  Similarity=0.204  Sum_probs=78.1

Q ss_pred             hccCCCCCCEEEccCCCCcccccc----ccCCC-CCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCcccc-
Q 038552          147 SLSNASNLEILDLTSNQLKGKVSI----DFSSL-KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGG-  220 (659)
Q Consensus       147 ~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-  220 (659)
                      .+...+.|+.|++++|.+.+....    .+... ..++.|++..|.++.....  .+...+..+..++.++++.|.+.. 
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~--~l~~~L~~~~~l~~l~l~~n~l~~~  187 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA--PLAAVLEKNEHLTELDLSLNGLIEL  187 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH--HHHHHHhcccchhHHHHHhcccchh
Confidence            345566666677776666532211    12222 3455666666666554333  445556667777777777776531 


Q ss_pred             ---ccChhHHh---ccccCCEEEcccCcccccC----CcccccCCC-cCeeecccccCCCCC----CccccCC-CCCcEE
Q 038552          221 ---ELPHSIAN---LSSTMTDFRIGANQISGTI----PPGIRNLVN-LIALTMEINKLHGTI----PDTIGEL-KNLQQL  284 (659)
Q Consensus       221 ---~~~~~~~~---~~~~L~~L~l~~~~~~~~~----~~~l~~l~~-L~~L~l~~n~l~~~~----~~~~~~~-~~L~~L  284 (659)
                         .++..+..   ...+++.|++++|.++...    ...+...+. +..+++..|.+.+..    ...+..+ ..++.+
T Consensus       188 g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l  267 (478)
T KOG4308|consen  188 GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVL  267 (478)
T ss_pred             hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhh
Confidence               11222221   1224555555555544211    111222233 444555555544321    1122223 444555


Q ss_pred             EccCCCCCCCC----CccccCCCCCcEEEccCCccc
Q 038552          285 SLYNNSLQGSI----PSSLGNLTKLVELPLSYNNLQ  316 (659)
Q Consensus       285 ~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~  316 (659)
                      ++..|.+....    ...+..++.++++.++.|.+.
T Consensus       268 ~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  268 DLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            55555555332    222333445555555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.97  E-value=0.0019  Score=69.15  Aligned_cols=111  Identities=18%  Similarity=0.157  Sum_probs=49.1

Q ss_pred             CCCCcEEeccccCCCcc--ccccccCCCCCcEEEccCC-ccCcccc----cccCCCCCCCEEEeecCc-CCccCcccccC
Q 038552           30 LLNLQTLAIDFNYLTGQ--LPDFVGNLSALKVFYIIGN-SLGGKIP----TTLGLLRNLVDLNVGENR-FSGMFPRSICN  101 (659)
Q Consensus        30 ~~~L~~L~ls~~~~~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  101 (659)
                      ++.|+.|.+..+.-...  .-.....++.|+.|+++++ ......+    .....+.+|+.|+++.+. ++...-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555433222  2233445556666665542 1101111    122344555566665555 33332222222


Q ss_pred             -CCCCCEEeccCcc-ccccChHHHhcCCCCCcEEEccCCcC
Q 038552          102 -ISSLEWIYLPFNR-FSGSLPLDIAVNLPNLKALAIGGNNF  140 (659)
Q Consensus       102 -l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~  140 (659)
                       |++|++|.+.++. +++.--..+...++.|+.|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             5555555555444 33222233333455556665555543

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.20  E-value=0.0054  Score=62.05  Aligned_cols=49  Identities=29%  Similarity=0.274  Sum_probs=42.6

Q ss_pred             cCCcccHHHHHHHhhcCCccccccCCChHHHHHHHhccccccccccccch
Q 038552          549 QFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLM  598 (659)
Q Consensus       549 ~~~~~~~~eL~~AT~~Fs~~~~i~~~~l~~~~~~~~~~~~~~i~d~~l~~  598 (659)
                      ..+.|+|+||.+||+||+++++|+.++++.++++.++++ ..++.+++..
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~-~~vAVK~~~~  109 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDG-TVVAVKRLSS  109 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCC-CEEEEEEecC
Confidence            567899999999999999999999999998888999887 4677777743

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.13  E-value=0.0042  Score=66.54  Aligned_cols=16  Identities=44%  Similarity=0.613  Sum_probs=9.1

Q ss_pred             ccCCCCCcEEEccCCc
Q 038552          299 LGNLTKLVELPLSYNN  314 (659)
Q Consensus       299 ~~~l~~L~~L~l~~n~  314 (659)
                      ...++.++.+.+..+.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            3445666666665555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.75  E-value=0.00034  Score=72.77  Aligned_cols=188  Identities=24%  Similarity=0.276  Sum_probs=100.3

Q ss_pred             cCeeecccccCCCCCC----ccccCCCCCcEEEccCCCCCCCCCc----cccCC-CCCcEEEccCCccccc----cCccC
Q 038552          257 LIALTMEINKLHGTIP----DTIGELKNLQQLSLYNNSLQGSIPS----SLGNL-TKLVELPLSYNNLQGN----IPSSL  323 (659)
Q Consensus       257 L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~l~~~----~~~~~  323 (659)
                      +.++.+.+|.+.....    ..+...++|+.|++++|.+.+.-..    .+... ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6677777777654433    2344566777777777776632111    11111 3444455555554432    12223


Q ss_pred             cCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc----CCccccCC
Q 038552          324 GNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV----IPVTLSAC  399 (659)
Q Consensus       324 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~  399 (659)
                      .....++.++++.|.+.   +.....+              ....+..+....++++|++++|.++..    ....+...
T Consensus       169 ~~~~~l~~l~l~~n~l~---~~g~~~l--------------~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~  231 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLI---ELGLLVL--------------SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASG  231 (478)
T ss_pred             hcccchhHHHHHhcccc---hhhhHHH--------------hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhcc
Confidence            33444444444444432   0000000              000111233466777888888876522    11234444


Q ss_pred             CC-CCeEECCCCCCCCC----CcccccCC-CCCCEEECCCCccccc----chhhhcCCCCCCeeeCcCCcCc
Q 038552          400 VS-LEYLNISRNFFHGI----IPLSLSSL-KSIKEFNVSSNNLSGL----IPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       400 ~~-L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      ++ +.+|++..|.+.+.    ....+..+ ..++.++++.|.++..    +...+..++.++.+.+++|++.
T Consensus       232 ~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  232 ESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             chhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            55 66688888877644    22344455 6778888888888654    3355566778888888888774

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.73  E-value=0.016  Score=31.39  Aligned_cols=10  Identities=30%  Similarity=0.521  Sum_probs=3.7

Q ss_pred             cEEEccCCcc
Q 038552           58 KVFYIIGNSL   67 (659)
Q Consensus        58 ~~L~l~~n~l   67 (659)
                      ++|++++|.+
T Consensus         3 ~~Ldls~n~l   12 (22)
T PF00560_consen    3 EYLDLSGNNL   12 (22)
T ss_dssp             SEEEETSSEE
T ss_pred             cEEECCCCcC
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.64  E-value=0.017  Score=31.30  Aligned_cols=12  Identities=33%  Similarity=0.639  Sum_probs=6.0

Q ss_pred             CCEEECCCCccc
Q 038552          426 IKEFNVSSNNLS  437 (659)
Q Consensus       426 L~~L~l~~n~l~  437 (659)
                      |+.||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            445555555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=91.87  E-value=0.11  Score=50.82  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=27.9

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      .+.++...|.+.+|.+||+|.||+.+|+.++
T Consensus       254 ~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i~  284 (284)
T cd05038         254 EVYDLMKLCWEAEPQDRPSFADLILIVDRLR  284 (284)
T ss_pred             HHHHHHHHHhccChhhCCCHHHHHHHHhhcC
Confidence            4668888999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.71  E-value=0.0051  Score=55.39  Aligned_cols=88  Identities=20%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             hhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCC
Q 038552           26 EIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSL  105 (659)
Q Consensus        26 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  105 (659)
                      .+..+...+.||++.|++. .....|+.++.|..|+++.|.+ ...|.+++.+..++.+++..|..+ ..|.+++..+++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3455667777888877765 4455566777777888887777 566777788778888888777766 677788888888


Q ss_pred             CEEeccCcccc
Q 038552          106 EWIYLPFNRFS  116 (659)
Q Consensus       106 ~~L~l~~n~~~  116 (659)
                      +++++..+.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88887777654

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=90.24  E-value=0.22  Score=48.81  Aligned_cols=31  Identities=16%  Similarity=0.219  Sum_probs=27.4

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      .+.++...|.+.+|.+||||.+|+++|+.++
T Consensus       254 ~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~~  284 (284)
T cd05081         254 EIYAIMKECWNNDPSQRPSFSELALQVEAIR  284 (284)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHHHHHHhcC
Confidence            3567788899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=89.65  E-value=0.33  Score=47.10  Aligned_cols=30  Identities=23%  Similarity=0.221  Sum_probs=26.9

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      .+.++...|.+.+|.+||+|.+|+++|+++
T Consensus       238 ~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         238 AVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            357888999999999999999999999765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.50  E-value=0.0076  Score=54.34  Aligned_cols=84  Identities=18%  Similarity=0.232  Sum_probs=41.7

Q ss_pred             CCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcE
Q 038552           53 NLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKA  132 (659)
Q Consensus        53 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  132 (659)
                      .......||++.|.+. ..-..|.-++.|..|+++.|.+. ..|.+++....++.+++..|..+ ..|.... ..+.+++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~-k~~~~k~  115 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK-KEPHPKK  115 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc-ccCCcch
Confidence            3344445555555441 22233444455555555555554 45555555555555555555554 4554444 4555555


Q ss_pred             EEccCCcC
Q 038552          133 LAIGGNNF  140 (659)
Q Consensus       133 L~l~~n~~  140 (659)
                      +++..+.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            55555544

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=89.47  E-value=0.34  Score=47.76  Aligned_cols=33  Identities=15%  Similarity=0.302  Sum_probs=29.1

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      .+.++...|++.+|.+||+|.+|+++|+.+...
T Consensus       253 ~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~  285 (291)
T cd05094         253 EVYDIMLGCWQREPQQRLNIKEIYKILHALGKA  285 (291)
T ss_pred             HHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence            356888899999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=88.70  E-value=0.43  Score=46.98  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=27.3

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      .+.++...|.+.+|.+||+|.+++.+|+.+-
T Consensus       257 ~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~  287 (290)
T cd05045         257 EMYNLMLTCWKQEPDKRPTFADISKELEKMM  287 (290)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence            3567888999999999999999999998763

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=88.41  E-value=0.38  Score=47.13  Aligned_cols=31  Identities=13%  Similarity=0.053  Sum_probs=27.9

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      .+..+...|.+.+|.+||+|.+|+.+|+.+.
T Consensus       252 ~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         252 EVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             HHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            4667889999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.18  E-value=0.31  Score=24.39  Aligned_cols=11  Identities=36%  Similarity=0.661  Sum_probs=3.4

Q ss_pred             CCEEEeecCcC
Q 038552           81 LVDLNVGENRF   91 (659)
Q Consensus        81 L~~L~l~~n~l   91 (659)
                      |++|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444433

...

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=88.01  E-value=0.49  Score=45.84  Aligned_cols=29  Identities=21%  Similarity=0.221  Sum_probs=26.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.+|+++|+.+
T Consensus       237 l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         237 LYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            56888899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.74  E-value=0.53  Score=26.55  Aligned_cols=21  Identities=33%  Similarity=0.330  Sum_probs=11.6

Q ss_pred             CCCCEEeccCccccccChHHHh
Q 038552          103 SSLEWIYLPFNRFSGSLPLDIA  124 (659)
Q Consensus       103 ~~L~~L~l~~n~~~~~~~~~~~  124 (659)
                      ++|++|+|++|.++ .+|.+++
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45556666666555 5555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.74  E-value=0.53  Score=26.55  Aligned_cols=21  Identities=33%  Similarity=0.330  Sum_probs=11.6

Q ss_pred             CCCCEEeccCccccccChHHHh
Q 038552          103 SSLEWIYLPFNRFSGSLPLDIA  124 (659)
Q Consensus       103 ~~L~~L~l~~n~~~~~~~~~~~  124 (659)
                      ++|++|+|++|.++ .+|.+++
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45556666666555 5555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.61  E-value=0.076  Score=47.19  Aligned_cols=82  Identities=12%  Similarity=0.111  Sum_probs=54.4

Q ss_pred             CCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcc-cccccC-CCCCCCEEEeecCc-CCccCcccccCCCCCCE
Q 038552           31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGK-IPTTLG-LLRNLVDLNVGENR-FSGMFPRSICNISSLEW  107 (659)
Q Consensus        31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  107 (659)
                      ..++.++-+++.|....-+.+.+++.++.|.+.+|.-.+. --+.++ -.++|+.|++++|. |+..--..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            4577788888877766666777788888888877652111 111122 34788888888775 66555556777788888


Q ss_pred             EeccC
Q 038552          108 IYLPF  112 (659)
Q Consensus       108 L~l~~  112 (659)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            87754

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=87.26  E-value=0.59  Score=45.19  Aligned_cols=29  Identities=14%  Similarity=0.141  Sum_probs=25.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.+++++|+.+
T Consensus       234 ~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         234 VYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             HHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            45677889999999999999999999764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=87.19  E-value=0.59  Score=46.04  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=27.6

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      .+.++...|.+.+|.+||+|.+|+..|+.+.
T Consensus       262 ~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         262 ELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             HHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence            4668889999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.96  E-value=0.2  Score=27.68  Aligned_cols=20  Identities=25%  Similarity=0.307  Sum_probs=9.8

Q ss_pred             CCCCCEEEccCCcccccCch
Q 038552            6 YSNLIELRVSKNKLEGQIPE   25 (659)
Q Consensus         6 ~~~L~~L~ls~n~~~~~~~~   25 (659)
                      +++|++|+|++|.+++....
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHH
Confidence            35666666666666544333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.66  E-value=0.71  Score=26.03  Aligned_cols=16  Identities=38%  Similarity=0.700  Sum_probs=7.9

Q ss_pred             CCCCEEECCCCccccc
Q 038552          424 KSIKEFNVSSNNLSGL  439 (659)
Q Consensus       424 ~~L~~L~l~~n~l~~~  439 (659)
                      ++|+.|++++|.+...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3455555555555433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.66  E-value=0.71  Score=26.03  Aligned_cols=16  Identities=38%  Similarity=0.700  Sum_probs=7.9

Q ss_pred             CCCCEEECCCCccccc
Q 038552          424 KSIKEFNVSSNNLSGL  439 (659)
Q Consensus       424 ~~L~~L~l~~n~l~~~  439 (659)
                      ++|+.|++++|.+...
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3455555555555433

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=86.60  E-value=0.55  Score=46.34  Aligned_cols=28  Identities=14%  Similarity=0.128  Sum_probs=25.6

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      .+.++...|.+.+|.+||+|.+|+++|.
T Consensus       267 ~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         267 PVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            4778999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=86.51  E-value=0.56  Score=45.23  Aligned_cols=28  Identities=18%  Similarity=0.308  Sum_probs=25.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCH  649 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~  649 (659)
                      +.++...|.+.+|.+||+|.++.+.|+.
T Consensus       233 ~~~~i~~~l~~~p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         233 IYKIMLECWAAEPEDRPSFKALREELDN  260 (261)
T ss_pred             HHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence            5577789999999999999999999975

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=86.50  E-value=0.62  Score=47.06  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=27.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +..+...|.+.+|.+||+|.+|+++|+.+..
T Consensus       306 l~~li~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         306 IYRIMLACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            5578888999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=85.96  E-value=0.74  Score=45.24  Aligned_cols=32  Identities=16%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +..+...|.+.+|.+||+|.+|...|+.+...
T Consensus       251 l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         251 VYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             HHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence            56788899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=85.87  E-value=0.59  Score=45.12  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=20.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKL  647 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L  647 (659)
                      +..+...|.+.+|.+||+|.++++.|
T Consensus       234 ~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  234 IYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             HHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            55778889999999999999999886

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=85.86  E-value=0.71  Score=46.65  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=28.0

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      .+.++...|.+.+|.+||++.+|+++|+.+-+
T Consensus       304 ~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         304 EIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            35688899999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=85.73  E-value=0.64  Score=44.64  Aligned_cols=27  Identities=19%  Similarity=0.271  Sum_probs=24.5

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKL  647 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L  647 (659)
                      .+.++..+|.+.+|.+||+|.+|+++|
T Consensus       229 ~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         229 SVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             HHHHHHHHHcccChhhCCCHHHHHHhh
Confidence            366889999999999999999999887

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=85.62  E-value=0.64  Score=44.82  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCH  649 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~  649 (659)
                      .+.+++..|++.+|.+||+|.+++++|+.
T Consensus       232 ~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         232 ELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             HHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence            35678889999999999999999999974

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=85.45  E-value=0.7  Score=44.90  Aligned_cols=31  Identities=13%  Similarity=0.100  Sum_probs=27.8

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      .+.++...|.+.+|.+||++.+|...|+.++
T Consensus       243 ~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~~  273 (273)
T cd05074         243 DVYELMCQCWSPEPKCRPSFQHLRDQLELIW  273 (273)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHhhC
Confidence            4678888999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=85.42  E-value=0.9  Score=44.85  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=28.7

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF  654 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~  654 (659)
                      +.++...|.+.+|.+||+|.+|+++|+.+...+
T Consensus       247 ~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~  279 (297)
T cd05089         247 VYELMRQCWRDRPYERPPFAQISVQLSRMLEAR  279 (297)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence            457788999999999999999999999887643

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=85.24  E-value=0.71  Score=44.37  Aligned_cols=27  Identities=15%  Similarity=0.280  Sum_probs=24.4

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKL  647 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L  647 (659)
                      .+..+...|.+.+|.+||+|.+++++|
T Consensus       229 ~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         229 TVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            367888899999999999999999887

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=85.05  E-value=0.68  Score=45.65  Aligned_cols=28  Identities=21%  Similarity=0.165  Sum_probs=25.3

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      .+.++...|.+.+|.+||+|.+|++.|+
T Consensus       268 ~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         268 DIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            3678899999999999999999999885

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=84.82  E-value=0.65  Score=45.41  Aligned_cols=29  Identities=24%  Similarity=0.324  Sum_probs=25.7

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCH  649 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~  649 (659)
                      .+.++...|.+.+|.+||+|++|.+.|+.
T Consensus       254 ~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         254 RVYALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence            46677789999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=84.70  E-value=0.87  Score=43.90  Aligned_cols=30  Identities=13%  Similarity=0.229  Sum_probs=27.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      +.++...|.+.+|.+||+|.+|+.+|+.+.
T Consensus       231 ~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         231 LYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence            557888899999999999999999998775

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=84.60  E-value=0.88  Score=44.18  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.+++.+|+.+
T Consensus       240 ~~~li~~~l~~~p~~Rps~~~il~~l~~~  268 (270)
T cd05047         240 VYDLMRQCWREKPYERPSFAQILVSLNRM  268 (270)
T ss_pred             HHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence            56788889999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=84.57  E-value=0.92  Score=43.87  Aligned_cols=30  Identities=13%  Similarity=0.157  Sum_probs=25.6

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      +.++...|.+.+|.+||++.+|.+.++.+|
T Consensus       237 ~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         237 LRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             HHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence            345555799999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=84.56  E-value=0.74  Score=45.22  Aligned_cols=28  Identities=21%  Similarity=0.216  Sum_probs=25.2

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      .+..+..+|.+.+|.+||+|.|+++.|+
T Consensus       260 ~l~~li~~~l~~~p~~Rpt~~el~~~l~  287 (288)
T cd05050         260 ELYNLMRLCWSKLPSDRPSFASINRILQ  287 (288)
T ss_pred             HHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence            3567889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>PHA02988 hypothetical protein; Provisional

Probab=84.42  E-value=0.97  Score=44.30  Aligned_cols=31  Identities=16%  Similarity=0.256  Sum_probs=26.2

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++.-.|.+.+|.+||+|.+|+..|+..+.
T Consensus       251 l~~li~~cl~~dp~~Rps~~ell~~l~~~~~  281 (283)
T PHA02988        251 IKCIVEACTSHDSIKRPNIKEILYNLSLYKF  281 (283)
T ss_pred             HHHHHHHHhcCCcccCcCHHHHHHHHHHHHh
Confidence            3455567999999999999999999988764

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=84.37  E-value=0.82  Score=44.29  Aligned_cols=26  Identities=15%  Similarity=0.152  Sum_probs=22.4

Q ss_pred             HHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          623 IRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       623 ~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      .++..+|.+.+|.+||+|.||+.+++
T Consensus       243 ~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         243 TDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             HHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            34555899999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=83.87  E-value=0.99  Score=44.54  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=25.2

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      .+.++..+|.+.+|.+||+|.+|++.|+
T Consensus       268 ~~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         268 SLYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            4567888999999999999999999885

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=83.82  E-value=0.84  Score=46.92  Aligned_cols=28  Identities=18%  Similarity=0.284  Sum_probs=24.8

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCH  649 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~  649 (659)
                      +.++...|.+.+|.+||+|.+|+++|+.
T Consensus       346 l~~li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         346 MYDIMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             HHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence            4567788999999999999999999975

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=83.70  E-value=1.3  Score=43.29  Aligned_cols=31  Identities=13%  Similarity=0.192  Sum_probs=26.6

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +..+...|.+.+|..||+|.|++++|..+..
T Consensus       240 ~~~li~~c~~~~p~~Rps~~el~~~l~~~~~  270 (279)
T cd05111         240 VYMVMVKCWMIDENVRPTFKELANEFTRMAR  270 (279)
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence            3456678999999999999999999988764

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=83.55  E-value=1.1  Score=43.80  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=27.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|+.||++.+|+.+|+.+.+
T Consensus       248 ~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         248 LFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            4577888999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=83.52  E-value=1.1  Score=43.45  Aligned_cols=29  Identities=21%  Similarity=0.183  Sum_probs=25.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +..+...|.+.+|.+||+|.+|+++|..+
T Consensus       238 ~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         238 LHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             HHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            45677789999999999999999999764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=83.34  E-value=1.1  Score=43.38  Aligned_cols=29  Identities=14%  Similarity=0.227  Sum_probs=25.7

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.++++.|+.+
T Consensus       243 ~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         243 LYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            45778899999999999999999999764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=83.31  E-value=0.91  Score=43.74  Aligned_cols=28  Identities=18%  Similarity=0.096  Sum_probs=25.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCH  649 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~  649 (659)
                      +.++...|.+.+|.+||+|.++..+|+.
T Consensus       233 ~~~li~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         233 LYDIMKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             HHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            4577889999999999999999999974

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=83.23  E-value=0.84  Score=43.87  Aligned_cols=31  Identities=13%  Similarity=0.185  Sum_probs=26.9

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      .+.++...|.+.+|.+||++.+|+++|+++.
T Consensus       226 ~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         226 EIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence            3557888999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=83.22  E-value=1.2  Score=42.92  Aligned_cols=29  Identities=14%  Similarity=0.149  Sum_probs=24.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +..+...|.+.+|.+||+|.+|.+++.++
T Consensus       237 ~~~li~~~l~~~p~~Rpt~~~i~~~~~~~  265 (267)
T cd08229         237 LRQLVNMCINPDPEKRPDITYVYDVAKRM  265 (267)
T ss_pred             HHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence            34555689999999999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=83.05  E-value=1.1  Score=43.40  Aligned_cols=30  Identities=13%  Similarity=0.143  Sum_probs=25.5

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      .+.++...|.+.+|.+||+|.+|++.|+.+
T Consensus       243 ~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         243 ELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            355666779999999999999999999764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=82.99  E-value=1.5  Score=43.52  Aligned_cols=32  Identities=16%  Similarity=0.141  Sum_probs=28.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||+|.+|+..|+.+...
T Consensus       271 ~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         271 LYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             HHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence            44667789999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=82.76  E-value=1.1  Score=43.28  Aligned_cols=29  Identities=17%  Similarity=0.159  Sum_probs=25.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.+|+.+|+.+
T Consensus       240 ~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         240 LHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            45677889999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=82.51  E-value=1.1  Score=44.41  Aligned_cols=28  Identities=25%  Similarity=0.203  Sum_probs=24.7

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      .+.++...|.+.+|.+||+|.+|++.|+
T Consensus       276 ~~~~li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         276 GLYELMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             HHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence            3567788999999999999999999885

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=82.46  E-value=0.96  Score=43.19  Aligned_cols=28  Identities=14%  Similarity=0.220  Sum_probs=24.9

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      .+..+...|.+.+|.+||+|.+|+++|.
T Consensus       222 ~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         222 DVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             HHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            4667888999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=82.29  E-value=1.3  Score=43.87  Aligned_cols=31  Identities=16%  Similarity=0.145  Sum_probs=27.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||+|.+|++.|.++..
T Consensus       268 ~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~  298 (304)
T cd05101         268 LYMMMRDCWHAIPSHRPTFKQLVEDLDRILT  298 (304)
T ss_pred             HHHHHHHHcccChhhCCCHHHHHHHHHHHHH
Confidence            4456778999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=81.92  E-value=1.4  Score=42.42  Aligned_cols=30  Identities=13%  Similarity=0.120  Sum_probs=26.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      +.++...|.+.+|.+||++.+|+.+|..++
T Consensus       237 ~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         237 LRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             HHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            446667799999999999999999998775

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=81.85  E-value=1.3  Score=44.96  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=26.8

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||+|.+|++.|+.+-+
T Consensus       311 ~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         311 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            4577788999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=81.43  E-value=1.1  Score=43.00  Aligned_cols=27  Identities=19%  Similarity=0.370  Sum_probs=24.4

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKL  647 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L  647 (659)
                      .+.++...|.+.+|.+||+|.+|+++|
T Consensus       229 ~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         229 EVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            366888999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=81.35  E-value=1.3  Score=45.41  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=25.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.+|+++|+.+
T Consensus       344 l~~li~~cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         344 IYSIMKMCWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            34556689999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=81.29  E-value=1.4  Score=43.06  Aligned_cols=30  Identities=10%  Similarity=0.172  Sum_probs=26.7

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      .+.++...|.+.+|.+||++.+|+..++.+
T Consensus       254 ~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         254 EVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            466788899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.05  E-value=0.23  Score=44.31  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             CCCCCEEEccCC-CCccccccccCCCCCCCEEECCC
Q 038552          151 ASNLEILDLTSN-QLKGKVSIDFSSLKNLSWLNLEQ  185 (659)
Q Consensus       151 l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~  185 (659)
                      .++|+.|++++| .|+...-..+..+++|+.|.+.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            355666666655 34443334455566666666543

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=80.97  E-value=1.3  Score=42.34  Aligned_cols=28  Identities=21%  Similarity=0.199  Sum_probs=24.6

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      .+..+...|.+.+|.+||+|.+|.++|.
T Consensus       224 ~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         224 AVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence            3556778899999999999999999985

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=80.88  E-value=1.1  Score=43.72  Aligned_cols=27  Identities=15%  Similarity=0.262  Sum_probs=24.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      +..+...|.+.+|.+||+|.|++.+|+
T Consensus       250 ~~~li~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         250 LFELMRMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence            567888999999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=80.38  E-value=1.7  Score=42.12  Aligned_cols=29  Identities=17%  Similarity=0.124  Sum_probs=25.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.++.+.|+++
T Consensus       237 ~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         237 LHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             HHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            55677789999999999999999998754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=80.09  E-value=1.8  Score=42.85  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=27.2

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +..+...|...+|.+||+|.+++++|..+.+
T Consensus       240 ~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~  270 (303)
T cd05110         240 VYMVMVKCWMIDADSRPKFKELAAEFSRMAR  270 (303)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            5567788999999999999999999988754

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	659
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-35
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-30
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-35
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-30
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-12
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		2e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/409 (30%), Positives = 193/409 (47%), Gaps = 39/409 (9%)
Query: 9   LIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLG 68
           L  L +S NK+ G +  ++   +NL+ L +  N  +  +P F+G+ SAL+   I GN L 
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 69  GKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLP 128
           G     +     L  LN+  N+F G  P     + SL+++ L  N+F+G +P  ++    
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 129 NLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNN 187
            L  L + GN+F+G++P    + S LE L L+SN   G++ +D    ++ L  L+L  N 
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 188 LGMGTANDLDFVTFLTNCS-SLKVISLYANQFGGE-LPHSIANLSSTMTDFRIGANQISG 245
                    +    LTN S SL  + L +N F G  LP+   N  +T+ +  +  N  +G
Sbjct: 352 FSG------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLGNLTKL 305
            IPP + N   L++L +  N L GTIP ++G                  IP  L  +  L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 306 VELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXXXXXXXX 365
             L L +N+L G IPS L NC  L   + S N+LTG +P                     
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW------------------- 506
Query: 366 XXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414
                 +G L+NL  L +S N FSG IP  L  C SL +L+++ N F+G
Sbjct: 507 ------IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 141/514 (27%), Positives = 211/514 (41%), Gaps = 34/514 (6%)
Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
           L   S L  L +S NKL G     I +   L+ L I  N   G +P     L +L+   +
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSL 273
Query: 63  IGNSLGGKIPTTL-GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
             N   G+IP  L G    L  L++  N F G  P    + S LE + L  N FSG LP+
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSN-ASNLEILDLTSNQLKGKVSIDF-SSLKNLS 179
           D  + +  LK L +  N F G +P SL+N +++L  LDL+SN   G +  +   + KN  
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
                QNN   G          L+NCS L  + L  N   G +P S+ +LS  + D ++ 
Sbjct: 394 QELYLQNNGFTGK-----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLW 447
Query: 240 ANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSL 299
            N + G IP  +  +  L  L ++ N L G IP  +                   IP  +
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP----HQXXXXXXXXX 355
           G L  L  L LS N+  GNIP+ LG+C+ L   + + N   G +P     Q         
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 356 XXXXXXXXXXXXXXXQVGNLKNLVKL-----------------DISGNQFSGVIPVTLSA 398
                          +     NL++                  +I+   + G    T   
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 627
Query: 399 CVSLEYLNISRNFFHGXXXXXXXXXXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458
             S+ +L++S N   G               N+  N++SG IP+ + +L  +  LDLS N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 459 HFEGEVPKK-GVFSNKTKISLQGNVKLCGGIDEL 491
             +G +P+     +  T+I L  N  L G I E+
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPEM 720

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/409 (30%), Positives = 193/409 (47%), Gaps = 39/409 (9%)
Query: 9   LIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLG 68
           L  L +S NK+ G +  ++   +NL+ L +  N  +  +P F+G+ SAL+   I GN L 
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 69  GKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLP 128
           G     +     L  LN+  N+F G  P     + SL+++ L  N+F+G +P  ++    
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 129 NLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNN 187
            L  L + GN+F+G++P    + S LE L L+SN   G++ +D    ++ L  L+L  N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 188 LGMGTANDLDFVTFLTNCS-SLKVISLYANQFGGE-LPHSIANLSSTMTDFRIGANQISG 245
                    +    LTN S SL  + L +N F G  LP+   N  +T+ +  +  N  +G
Sbjct: 355 FSG------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSLGNLTKL 305
            IPP + N   L++L +  N L GTIP ++G                  IP  L  +  L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 306 VELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQXXXXXXXXXXXXXXXXXXX 365
             L L +N+L G IPS L NC  L   + S N+LTG +P                     
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW------------------- 509
Query: 366 XXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414
                 +G L+NL  L +S N FSG IP  L  C SL +L+++ N F+G
Sbjct: 510 ------IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 141/514 (27%), Positives = 211/514 (41%), Gaps = 34/514 (6%)
Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
           L   S L  L +S NKL G     I +   L+ L I  N   G +P     L +L+   +
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSL 276
Query: 63  IGNSLGGKIPTTL-GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
             N   G+IP  L G    L  L++  N F G  P    + S LE + L  N FSG LP+
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSN-ASNLEILDLTSNQLKGKVSIDF-SSLKNLS 179
           D  + +  LK L +  N F G +P SL+N +++L  LDL+SN   G +  +   + KN  
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
                QNN   G          L+NCS L  + L  N   G +P S+ +LS  + D ++ 
Sbjct: 397 QELYLQNNGFTGK-----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLW 450
Query: 240 ANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIPSSL 299
            N + G IP  +  +  L  L ++ N L G IP  +                   IP  +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP----HQXXXXXXXXX 355
           G L  L  L LS N+  GNIP+ LG+C+ L   + + N   G +P     Q         
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 356 XXXXXXXXXXXXXXXQVGNLKNLVKL-----------------DISGNQFSGVIPVTLSA 398
                          +     NL++                  +I+   + G    T   
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630
Query: 399 CVSLEYLNISRNFFHGXXXXXXXXXXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458
             S+ +L++S N   G               N+  N++SG IP+ + +L  +  LDLS N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 459 HFEGEVPKK-GVFSNKTKISLQGNVKLCGGIDEL 491
             +G +P+     +  T+I L  N  L G I E+
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPEM 723

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 109/251 (43%), Gaps = 34/251 (13%)
Query: 23  IPEEIGSLLNLQTLAID-FNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL 81
           IP  + +L  L  L I   N L G +P  +  L+ L   YI   ++ G IP  L  ++ L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 82  VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFF 141
           V L+   N  SG  P SI ++ +L  I    NR SG++P           ++ I  N   
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 142 GSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTF 201
           G IP + +N  NL  +DL+ N L+G  S+ F S KN   ++L +N+L    A DL  V  
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL----AFDLGKV-- 240
Query: 202 LTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALT 261
                                      LS  +    +  N+I GT+P G+  L  L +L 
Sbjct: 241 --------------------------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 262 MEINKLHGTIP 272
           +  N L G IP
Sbjct: 275 VSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 125/321 (38%), Gaps = 37/321 (11%)
Query: 179 SWLNLEQ--NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF 236
           SWL      N   +G   D D  T+  N   L  ++L        +P S+ANL      +
Sbjct: 26  SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY---PIPSSLANLPYLNFLY 82
Query: 237 RIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEXXXXXXXXXXXXXXXXXIP 296
             G N + G IPP I  L  L  L +    + G IPD + +                 +P
Sbjct: 83  IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 297 SSLGNLTKLVELPLSYNNLQGNIPSSLGN-CQILRMFNASRNKLTGALPHQXXXXXXXXX 355
            S+ +L  LV +    N + G IP S G+  ++      SRN+LTG +P           
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP----------- 191
Query: 356 XXXXXXXXXXXXXXXQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGX 415
                             NL NL  +D+S N   G   V   +  + + +++++N     
Sbjct: 192 --------------PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AF 235
Query: 416 XXXXXXXXXXXXEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTK 475
                         ++ +N + G +P+ L  L F+  L++S+N+  GE+P+ G       
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
Query: 476 ISLQGNVKLCGGIDELHLPSC 496
            +   N  LCG      LP+C
Sbjct: 296 SAYANNKCLCGS----PLPAC 312

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
           LS  + L  L V+++K++   P  I +L +L +L++++N +    P  + +L++L  F  
Sbjct: 151 LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206
Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD 122
             N +    P  +     L  L +G N+ + + P  + N+S L W+ +  N+ S    ++
Sbjct: 207 YVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD---IN 259
Query: 123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN 182
              +L  LK L +G N    S  + L+N S L  L L +NQL  +       L NL+ L 
Sbjct: 260 AVKDLTKLKXLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLF 317
Query: 183 LEQNNL 188
           L QN++
Sbjct: 318 LSQNHI 323

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 31/169 (18%)
Query: 127 LPNLKALAIGGN---------------------NFFGSIPNSLSNA-SNLEILDLTSNQL 164
           LPN++ LA+GGN                     N   S+PN + +  +NL+ L L  NQL
Sbjct: 62  LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 165 KGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPH 224
           +      F  L NL++LNL  N L        D +T LT       + L  NQ    LP 
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE------LDLSYNQLQS-LPE 174
Query: 225 SIANLSSTMTDFRIGANQISGTIPPGIRN-LVNLIALTMEINKLHGTIP 272
            + +  + + D R+  NQ+  ++P G+ + L +L  + +  N    T P
Sbjct: 175 GVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	659
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-140
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-118
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-117
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-107
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  425 bits (1096), Expect = e-140
 Identities = 144/508 (28%), Positives = 235/508 (46%), Gaps = 22/508 (4%)

Query: 4   SRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
               +L  L +++NK  G+IP+ + G+   L  L +  N+  G +P F G+ S L+   +
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 63  IGNSLGGKIPT-TLGLLRNLVDLNVGENRFSGMFPRSICNIS-SLEWIYLPFNRFSGSLP 120
             N+  G++P  TL  +R L  L++  N FSG  P S+ N+S SL  + L  N FSG + 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

Query: 121 LDIAVN-LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLS 179
            ++  N    L+ L +  N F G IP +LSN S L  L L+ N L G +     SL  L 
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
            L L  N L  G          L    +L+ + L  N   GE+P  ++N ++ +    + 
Sbjct: 446 DLKLWLNMLE-GE-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLS 498

Query: 240 ANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL 299
            N+++G IP  I  L NL  L +  N   G IP  +G+ ++L  L L  N   G+IP+++
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

Query: 300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRN--KLTGALPHQLLSITTLTLSL 357
              +      ++ N + G     + N  + +  + + N  +  G    QL  ++T     
Sbjct: 559 FKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN-PC 613

Query: 358 DLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP 417
           ++++ +  G       N  +++ LD+S N  SG IP  + +   L  LN+  N   G IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673

Query: 418 LSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKIS 477
             +  L+ +   ++SSN L G IP+ +  L+ +  +DLS N+  G +P+ G F       
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733

Query: 478 LQGNVKLCGGIDELHLPSCPSKGSIKPK 505
              N  LCG      LP C    +    
Sbjct: 734 FLNNPGLCG----YPLPRCDPSNADGYA 757

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  368 bits (947), Expect = e-118
 Identities = 144/499 (28%), Positives = 227/499 (45%), Gaps = 26/499 (5%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFV--GNLSALK 58
           ++L   + L  L +S + + G +        +L +L +  N L+G +      G+ S LK
Sbjct: 71  SSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 59  VFYIIGNSLGGKIPTTLGL-LRNLVDLNVGENRFSGMFPRSIC---NISSLEWIYLPFNR 114
              +  N+L      + GL L +L  L++  N  SG              L+ + +  N+
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 115 FSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSS 174
            SG + +       NL+ L +  NNF   IP  L + S L+ LD++ N+L G  S   S+
Sbjct: 190 ISGDVDV---SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMT 234
              L  LN+  N    G               SL+ +SL  N+F GE+P  ++    T+T
Sbjct: 246 CTELKLLNISSNQFV-GPIPP-------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 235 DFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIP-DTIGELKNLQQLSLYNNSLQG 293
              +  N   G +PP   +   L +L +  N   G +P DT+ +++ L+ L L  N   G
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 294 SIPSSLGNLT-KLVELPLSYNNLQGNIPSSLGNCQI--LRMFNASRNKLTGALPHQLLSI 350
            +P SL NL+  L+ L LS NN  G I  +L       L+      N  TG +P  L + 
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN 410
           + L  SL LS N L+G++P  +G+L  L  L +  N   G IP  L    +LE L +  N
Sbjct: 418 SELV-SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GV 469
              G IP  LS+  ++   ++S+N L+G IP+++  L  +  L LS N F G +P + G 
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 470 FSNKTKISLQGNVKLCGGI 488
             +   + L  N    G I
Sbjct: 537 CRSLIWLDLNTN-LFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  367 bits (944), Expect = e-117
 Identities = 151/488 (30%), Positives = 229/488 (46%), Gaps = 25/488 (5%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEI---GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKV 59
             + ++L  L +S N + G              L+ LAI  N ++G +   V     L+ 
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEF 204

Query: 60  FYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSL 119
             +  N+    IP  LG    L  L++  N+ SG F R+I   + L+ + +  N+F G +
Sbjct: 205 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 120 PLDIAVNLPNLKALAIGGNNFFGSIPNSLS-NASNLEILDLTSNQLKGKVSIDFSSLKNL 178
           P    + L +L+ L++  N F G IP+ LS     L  LDL+ N   G V   F S   L
Sbjct: 264 P---PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 179 SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRI 238
             L L  NN      +    +  L     LKV+ L  N+F GELP S+ NLS+++    +
Sbjct: 321 ESLALSSNNF-----SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 239 GANQISGTIPPGIRN--LVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
            +N  SG I P +       L  L ++ N   G IP T+     L  L L  N L G+IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 297 SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356
           SSLG+L+KL +L L  N L+G IP  L   + L       N LTG +P  L + T L   
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN-W 494

Query: 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416
           + LSNN L G +P  +G L+NL  L +S N FSG IP  L  C SL +L+++ N F+G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 417 PLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN--HFEGEVPKK-GVFSNK 473
           P ++          +++N ++G    ++KN    +    + N   F+G   ++    S +
Sbjct: 555 PAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 474 TKISLQGN 481
              ++   
Sbjct: 611 NPCNITSR 618

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  341 bits (878), Expect = e-107
 Identities = 119/448 (26%), Positives = 210/448 (46%), Gaps = 22/448 (4%)

Query: 28  GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG 87
             + ++   +   N     +   + +L+ L+  ++  + + G +        +L  L++ 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108

Query: 88  ENRFSGMFP--RSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIP 145
            N  SG      S+ + S L+++ +  N       +   + L +L+ L +  N+  G+  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 146 NSL---SNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFL 202
                      L+ L ++ N++ G   +D S   NL +L++  NN           + FL
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFS-TG------IPFL 219

Query: 203 TNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTM 262
            +CS+L+ + +  N+  G+   +I+  +  +    I +NQ  G IPP    L +L  L++
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTE-LKLLNISSNQFVGPIPPL--PLKSLQYLSL 276

Query: 263 EINKLHGTIPDTI-GELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIP- 320
             NK  G IPD + G    L  L L  N   G++P   G+ + L  L LS NN  G +P 
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 321 SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGN--LKNL 378
            +L   + L++ + S N+ +G LP  L +++   L+LDLS+N  +G +   +       L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 379 VKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSG 438
            +L +  N F+G IP TLS C  L  L++S N+  G IP SL SL  +++  +  N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 439 LIPEFLKNLSFMEFLDLSYNHFEGEVPK 466
            IP+ L  +  +E L L +N   GE+P 
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  259 bits (664), Expect = 1e-76
 Identities = 108/377 (28%), Positives = 167/377 (44%), Gaps = 23/377 (6%)

Query: 100 CNISSLEWIYLP---FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEI 156
           C    +  I L     N    ++   +  +L  L++L +  ++  GS+      +++L  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSVS-GFKCSASLTS 104

Query: 157 LDLTSNQLKGKVSID--FSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLY 214
           LDL+ N L G V+      S   L +LN+  N L     +    V+     +SL+V+ L 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-----DFPGKVSGGLKLNSLEVLDLS 159

Query: 215 ANQFGGELPHSIANLS--STMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIP 272
           AN   G              +    I  N+ISG +       VNL  L +  N     IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP 217

Query: 273 DTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMF 332
             +G+   LQ L +  N L G    ++   T+L  L +S N   G IP      + L+  
Sbjct: 218 F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274

Query: 333 NASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVI 392
           + + NK TG +P  L         LDLS N   G++P   G+   L  L +S N FSG +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 393 PV-TLSACVSLEYLNISRNFFHGIIPLSLSSLK-SIKEFNVSSNNLSGLIPEFLKN--LS 448
           P+ TL     L+ L++S N F G +P SL++L  S+   ++SSNN SG I   L     +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 449 FMEFLDLSYNHFEGEVP 465
            ++ L L  N F G++P
Sbjct: 395 TLQELYLQNNGFTGKIP 411

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  245 bits (627), Expect = 2e-71
 Identities = 95/344 (27%), Positives = 151/344 (43%), Gaps = 34/344 (9%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
             LS  S L+ L +S N L G IP  +GSL  L+ L +  N L G++P  +  +  L+  
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            +  N L G+IP+ L    NL  +++  NR +G  P+ I  + +L  + L  N FSG++P
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
            ++  +  +L  L +  N F G+IP ++   S      + +N + GK  +   +      
Sbjct: 532 AELG-DCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKE 586

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
            +   N                              +F G     +  LS+      I +
Sbjct: 587 CHGAGNL----------------------------LEFQGIRSEQLNRLST-RNPCNITS 617

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
               G   P   N  +++ L M  N L G IP  IG +  L  L+L +N + GSIP  +G
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP 344
           +L  L  L LS N L G IP ++    +L   + S N L+G +P
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  290 bits (744), Expect = 3e-93
 Identities = 80/308 (25%), Positives = 137/308 (44%), Gaps = 14/308 (4%)

Query: 196 LDFVTFLTNCSSL----KVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT--IPP 249
           L     L N ++L             + G L  +       + +  +    +     IP 
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYR-VNNLDLSGLNLPKPYPIPS 70

Query: 250 GIRNLVNLIALTM-EINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVEL 308
            + NL  L  L +  IN L G IP  I +L  L  L + + ++ G+IP  L  +  LV L
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 309 PLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSL 368
             SYN L G +P S+ +   L       N+++GA+P    S + L  S+ +S N L G +
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 369 PLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKE 428
           P    NL NL  +D+S N   G   V   +  + + +++++N     +   +   K++  
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 429 FNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGI 488
            ++ +N + G +P+ L  L F+  L++S+N+  GE+P+ G        +   N  LCG  
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS- 307

Query: 489 DELHLPSC 496
               LP+C
Sbjct: 308 ---PLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  204 bits (522), Expect = 9e-61
 Identities = 77/290 (26%), Positives = 119/290 (41%), Gaps = 12/290 (4%)

Query: 83  DLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV-NLPNLKALAIGG-NNF 140
             +     + G+   +      +  + L         P+  ++ NLP L  L IGG NN 
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 141 FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVT 200
            G IP +++  + L  L +T   + G +    S +K L  L+   N L  GT        
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GT-----LPP 143

Query: 201 FLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIAL 260
            +++  +L  I+   N+  G +P S  + S   T   I  N+++G IPP   NL NL  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202

Query: 261 TMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIP 320
            +  N L G      G  KN Q++ L  NSL   +   +G    L  L L  N + G +P
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP 261

Query: 321 SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPL 370
             L   + L   N S N L G +P Q  ++         +NN      PL
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFD-VSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (497), Expect = 3e-57
 Identities = 81/334 (24%), Positives = 123/334 (36%), Gaps = 63/334 (18%)

Query: 15  SKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQ--LPDFVGNLSALKVFYIIG-NSLGGKI 71
                 G + +       +  L +    L     +P  + NL  L   YI G N+L G I
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 72  PTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLK 131
           P  +  L  L  L +     SG  P  +  I +L  +   +N  SG+LP  I+ +LPNL 
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLV 152

Query: 132 ALAIGGNNFFGSIPNSLSNASNL-EILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM 190
            +   GN   G+IP+S  + S L   + ++ N+L GK+   F++L               
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------------- 197

Query: 191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG 250
                           +L  + L  N   G+      +                      
Sbjct: 198 ----------------NLAFVDLSRNMLEGDASVLFGSDK-------------------- 221

Query: 251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPL 310
                N   + +  N L   +   +G  KNL  L L NN + G++P  L  L  L  L +
Sbjct: 222 -----NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 311 SYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP 344
           S+NNL G IP   GN Q   +   + NK     P
Sbjct: 276 SFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (476), Expect = 4e-54
 Identities = 79/299 (26%), Positives = 123/299 (41%), Gaps = 39/299 (13%)

Query: 2   NLSRYSNLIELRVSKNKLEGQ--IPEEIGSLLNLQTLAI-DFNYLTGQLPDFVGNLSALK 58
             ++   +  L +S   L     IP  + +L  L  L I   N L G +P  +  L+ L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 59  VFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGS 118
             YI   ++ G IP  L  ++ LV L+   N  SG  P SI ++ +L  I    NR SG+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 119 LPLDIAVNLPNL-KALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKN 177
           +P     +   L  ++ I  N   G IP + +N  NL  +DL+ N L+G  S+ F S KN
Sbjct: 165 IPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 178 LSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFR 237
              ++L +N+L                                +L   +    + +    
Sbjct: 223 TQKIHLAKNSL------------------------------AFDLG-KVGLSKN-LNGLD 250

Query: 238 IGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
           +  N+I GT+P G+  L  L +L +  N L G IP   G L+     +  NN      P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (375), Expect = 6e-40
 Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 5/188 (2%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
             LS+   L+ L  S N L G +P  I SL NL  +  D N ++G +PD  G+ S L   
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 61  YIIG-NSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSL 119
             I  N L GKIP T   L NL  +++  N   G       +  + + I+L  N  +  L
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 120 PLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLS 179
              +     NL  L +  N  +G++P  L+    L  L+++ N L G++     +L+   
Sbjct: 238 G-KVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFD 294

Query: 180 WLNLEQNN 187
                 N 
Sbjct: 295 VSAYANNK 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  257 bits (659), Expect = 1e-76
 Identities = 97/496 (19%), Positives = 180/496 (36%), Gaps = 27/496 (5%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           +N+  L ++ N+L             L +L + FN ++   P+    L  LKV  +  N 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L      T     NL +L++  N    +         +L  + L  N  S S  L   V 
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQ 143

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASN--LEILDLTSNQLKGKVSIDFSSLKNLSWLNLE 184
           L NL+ L +  N         L   +N  L+ L+L+SNQ+K      F ++  L  L L 
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSST-MTDFRIGANQI 243
              L     +  + +      +S++ +SL  +Q       +   L  T +T   +  N +
Sbjct: 204 NVQL---GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 244 SGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNN---------SLQGS 294
           +         L  L    +E N +      ++  L N++ L+L  +         SL   
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 295 IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT-GALPHQLLSITTL 353
              S   L  L  L +  N++ G   +       L+  + S +  +   L ++       
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 354 TL--SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV-TLSACVSLEYLNISRN 410
           +    L+L+ N ++         L +L  LD+  N+    +         ++  + +S N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGL--IPEFLKNLSFMEFLDLSYNHFEGEVPKKG 468
            +  +   S + + S++   +    L  +   P   + L  +  LDLS N+         
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND--D 498

Query: 469 VFSNKTK---ISLQGN 481
           +     K   + LQ N
Sbjct: 499 MLEGLEKLEILDLQHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  249 bits (639), Expect = 8e-74
 Identities = 96/500 (19%), Positives = 188/500 (37%), Gaps = 39/500 (7%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVG---NLSALKVFYII 63
           S+L +L +S N+++   P    ++  L  L ++   L   L + +      ++++   + 
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 64  GNSLGGKIPTTLGLLR--NLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
            + L     TT   L+  NL  L++  N  + +   S   +  LE+ +L +N        
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 122 DIAVNLPNLKAL---------AIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDF 172
            +   L N++ L         +I   +       S      LE L++  N + G  S  F
Sbjct: 291 SLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 173 SSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSST 232
           + L NL +L+L  +   + T  +  FV+     S L +++L  N+       + + L   
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIESDAFSWLGH- 406

Query: 233 MTDFRIGANQISGTIPPG-IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSL 291
           +    +G N+I   +     R L N+  + +  NK      ++   + +LQ+L L   +L
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 292 QG--SIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLS 349
           +   S PS    L  L  L LS NN+       L   + L + +   N L          
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA--------- 517

Query: 350 ITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISR 409
                    L  +   G     +  L +L  L++  N F  +          L+ +++  
Sbjct: 518 --------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 410 NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPE-FLKNLSFMEFLDLSYNHFEGEVPKKG 468
           N  + +     ++  S+K  N+  N ++ +  + F      +  LD+ +N F+       
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

Query: 469 VFSNKTKISLQGNVKLCGGI 488
            F N    +     +L    
Sbjct: 630 WFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  231 bits (592), Expect = 4e-67
 Identities = 93/490 (18%), Positives = 168/490 (34%), Gaps = 44/490 (8%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
            +  +NL EL +  N ++           NL TL +  N L+         L  L+   +
Sbjct: 93  FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152

Query: 63  IGNSLGGKIPTTLGLLRN--LVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
             N +       L +  N  L  L +  N+     P     I  L  ++L   +   SL 
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 121 LDI--AVNLPNLKALAIGGNNFFGSIPNSLSN--ASNLEILDLTSNQLKGKVSIDFSSLK 176
             +   +   +++ L++  +    +   +      +NL +LDL+ N L    +  F+ L 
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272

Query: 177 NLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF 236
            L +  LE NN+       L   +      +++ ++L  +     +              
Sbjct: 273 QLEYFFLEYNNI-----QHLFSHSL-HGLFNVRYLNLKRSFTKQSISL------------ 314

Query: 237 RIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
                 +        + L  L  L ME N + G   +    L NL+ LSL N+       
Sbjct: 315 ----ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 297 SSLG----NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITT 352
           ++        + L  L L+ N +      +      L + +   N++   L  Q      
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 353 LTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV--IPVTLSACVSLEYLNISRN 410
               + LS N            + +L +L +       V   P       +L  L++S N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 411 FFHGIIPLSLSSLKSIKEFNVSSNNLS--------GLIPEFLKNLSFMEFLDLSYNHFEG 462
               I    L  L+ ++  ++  NNL+        G    FLK LS +  L+L  N F+ 
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 463 EVPKKGVFSN 472
                 VF +
Sbjct: 551 IPV--EVFKD 558

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (569), Expect = 7e-64
 Identities = 99/449 (22%), Positives = 163/449 (36%), Gaps = 27/449 (6%)

Query: 32  NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRF 91
           + +        LT Q+PD +   + + V  +  N L             L  L+VG N  
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 92  SGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNA 151
           S + P     +  L+ + L  N  S  L         NL  L +  N+      N     
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 152 SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVI 211
            NL  LDL+ N L          L+NL  L L  N +    + +LD        SSLK +
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF----ANSSLKKL 176

Query: 212 SLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIR---NLVNLIALTMEINKLH 268
            L +NQ     P     +   +    +   Q+  ++   +       ++  L++  ++L 
Sbjct: 177 ELSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 269 GTIPDTIGELK--NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNC 326
            T   T   LK  NL  L L  N+L      S   L +L    L YNN+Q     SL   
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 327 QILRMFNASRNKLTGALPH-QLLSITTLTLS-------LDLSNNLLNGSLPLQVGNLKNL 378
             +R  N  R+    ++    L  I   +         L++ +N + G        L NL
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 379 VKLDISGNQFSGVIPVTLS----ACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN 434
             L +S +  S       +    A   L  LN+++N    I   + S L  ++  ++  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 435 NLSGLIP-EFLKNLSFMEFLDLSYNHFEG 462
            +   +  +  + L  +  + LSYN +  
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  208 bits (532), Expect = 9e-59
 Identities = 80/396 (20%), Positives = 139/396 (35%), Gaps = 29/396 (7%)

Query: 100 CNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDL 159
           C +S  E       + +  +P D+     N+  L +  N        + +  S L  LD+
Sbjct: 2   CTVS-HEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV 56

Query: 160 TSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG 219
             N +          L  L  LNL+ N L   +            C++L  + L +N   
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT------FAFCTNLTELHLMSNSIQ 110

Query: 220 GELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELK 279
               +      + +    +  N +S T       L NL  L +  NK+     + +    
Sbjct: 111 KIKNNPFVKQKN-LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 280 N--LQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQI---LRMFNA 334
           N  L++L L +N ++   P     + +L  L L+   L  ++   L        +R  + 
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 335 SRNKLTGALPHQL--LSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVI 392
           S ++L+         L  T LT  LDLS N LN         L  L    +  N    + 
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLT-MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 393 PVTLSACVSLEYLNISRNF---------FHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEF 443
             +L    ++ YLN+ R+F            I   S   LK ++  N+  N++ G+    
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

Query: 444 LKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQ 479
              L  +++L LS +           F +     L 
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.0 bits (242), Expect = 4e-21
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 9/156 (5%)

Query: 329 LRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF 388
             + + S  KLT  +P  L +  T    L+L++N L             L  LD+  N  
Sbjct: 6   HEVADCSHLKLT-QVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 389 SGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLS 448
           S + P        L+ LN+  N    +   + +   ++ E ++ SN++  +         
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 449 FMEFLDLSYNHFEGEVPKKGVFSNKTK---ISLQGN 481
            +  LDLS+N         G          + L  N
Sbjct: 122 NLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
           L   S+L  L +  N  +    E    L  L+ + +  N L         N  +LK   +
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 63  IGNSLGGKIPTTLG-LLRNLVDLNVGENRFSGMFPRSICNISSLEW 107
             N +        G   RNL +L++  N F        C   S+ W
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFD-------CTCESIAW 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  253 bits (648), Expect = 2e-75
 Identities = 77/489 (15%), Positives = 154/489 (31%), Gaps = 53/489 (10%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
              +S+LI+  ++ +  +  I +     L    +    N +T  +   V  L+ L+ FY+
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYM 213

Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD 122
             +    +         N                    N+  L  + +        LP  
Sbjct: 214 GNSPFVAENICEAWENENSEYAQ-----QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 123 IAVNLPNLKALAIGGNNF--------FGSIPNSLSNASNLEILDLTSNQLK-GKVSIDFS 173
           +   LP ++ + +  N                       ++I+ +  N LK   V     
Sbjct: 269 LK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 174 SLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTM 233
            +K L  L    N L          +    +   L  ++L  NQ    +P +    +  +
Sbjct: 328 KMKKLGMLECLYNQL-------EGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQV 379

Query: 234 TDFRIGANQISGTIPP--GIRNLVNLIALTMEINKLHG-------TIPDTIGELKNLQQL 284
            +     N++   IP     +++  + A+    N++          +  T  +  N+  +
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 285 SLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQG-------NIPSSLGNCQILRMFNASRN 337
           +L NN +           + L  + L  N L         +   +  N  +L   +   N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 338 KLTGALP-HQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDI------SGNQFSG 390
           KLT      +  ++  L   +DLS N  +   P Q  N   L    I       GN+   
Sbjct: 499 KLTKLSDDFRATTLPYLV-GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFM 450
             P  ++ C SL  L I  N    +      ++  +   ++  N    +   ++      
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL---DIKDNPNISIDLSYVCPYIEA 613

Query: 451 EFLDLSYNH 459
               L Y+ 
Sbjct: 614 GMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  251 bits (644), Expect = 6e-75
 Identities = 65/492 (13%), Positives = 162/492 (32%), Gaps = 44/492 (8%)

Query: 3   LSRYSNLIELRVSKNKLEGQ----IPEEIGSLLNLQTLAIDFNYLTGQLPDFVG--NLSA 56
           + + + L  L +  +  +       P+ I + ++ +       +      D+    + S 
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 57  LKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFS 116
           L    I  +     I  +  +      +    N  +    +++  ++ L   Y+  + F 
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219

Query: 117 GSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLK 176
                +        +         + +      N  +L  +++ +     K+     +L 
Sbjct: 220 AENICEA------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 177 NLSWLNLEQNNLGMGTANDLDFV--TFLTNCSSLKVISLYANQF-GGELPHSIANLSSTM 233
            +  +N+  N    G     D+           +++I +  N      +  S+  +   +
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK-L 332

Query: 234 TDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQG 293
                  NQ+ G   P   + + L +L +  N++     +  G  + ++ LS  +N L+ 
Sbjct: 333 GMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK- 390

Query: 294 SIPSSL--GNLTKLVELPLSYNNLQG-------NIPSSLGNCQILRMFNASRNKLTGALP 344
            IP+     +++ +  +  SYN +          +  +      +   N S N+++    
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 345 HQLLSITTLTLSLDLSNNLLNG-------SLPLQVGNLKNLVKLDISGNQFSGVIP-VTL 396
               + + L+ S++L  N+L                N   L  +D+  N+ + +      
Sbjct: 451 ELFSTGSPLS-SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 397 SACVSLEYLNISRNFFHGIIPLSLSSLKSIKEF------NVSSNNLSGLIPEFLKNLSFM 450
           +    L  +++S N F    P    +  ++K F      +   N      PE +     +
Sbjct: 510 TTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 451 EFLDLSYNHFEG 462
             L +  N    
Sbjct: 569 TQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  241 bits (616), Expect = 7e-71
 Identities = 76/484 (15%), Positives = 158/484 (32%), Gaps = 57/484 (11%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQ----LPDFVGNLSALK 58
           L+    +  L +      G++P+ IG L  L+ LA+  +          P  +    + +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 59  VFYIIGNSLGGKIPTTLGLLR--NLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFS 116
               +                  +L+   +  +       +S         I    N  +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 117 GSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLK 176
             +   +   L  L+   +G + F            N E              + + +LK
Sbjct: 197 -FVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLK 249

Query: 177 NLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF 236
           +L+ + +      +         TFL     +++I++  N+                   
Sbjct: 250 DLTDVEVYNCPN-LTK-----LPTFLKALPEMQLINVACNRGIS---------------- 287

Query: 237 RIGANQISGTIPPGIRNLVNLIALTMEINKL-HGTIPDTIGELKNLQQLSLYNNSLQGSI 295
                +              +  + +  N L    +  ++ ++K L  L    N L+G +
Sbjct: 288 -GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346

Query: 296 PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP--HQLLSITTL 353
           P + G+  KL  L L+YN +     +  G  + +   + + NKL   +P      S++ +
Sbjct: 347 P-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVM 404

Query: 354 TLSLDLSNNLLNG-------SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLN 406
           + ++D S N +          L        N+  +++S NQ S       S    L  +N
Sbjct: 405 S-AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 407 ISRNFFHGI-------IPLSLSSLKSIKEFNVSSNNLSGLIPEF-LKNLSFMEFLDLSYN 458
           +  N    I          +  +   +   ++  N L+ L  +F    L ++  +DLSYN
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 459 HFEG 462
            F  
Sbjct: 524 SFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  217 bits (554), Expect = 5e-62
 Identities = 69/439 (15%), Positives = 138/439 (31%), Gaps = 47/439 (10%)

Query: 39  DFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSG----M 94
           + +    Q    + +   +    + G    G++P  +G L  L  L +G +         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 95  FPRSICNISSLEWIYLPFNRFSGS-LPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASN 153
            P+ I    S E        +  + +  D   +  +L    I  +    SI  S      
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 154 LEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISL 213
              +   SN +   VS     L  L    +  +                  C + +  + 
Sbjct: 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF-----------VAENICEAWENENS 232

Query: 214 YANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH----- 268
              Q          NL   +TD  +        +P  ++ L  +  + +  N+       
Sbjct: 233 EYAQQYKTEDLKWDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 269 ---GTIPDTIGELKNLQQLSLYNNSLQ-GSIPSSLGNLTKLVELPLSYNNLQGNIPSSLG 324
                        + +Q + +  N+L+   + +SL  + KL  L   YN L+G +P+  G
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FG 350

Query: 325 NCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG-SLPLQVGNLKNLVKLDI 383
           +   L   N + N++T  +P      T    +L  ++N L          ++  +  +D 
Sbjct: 351 SEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409

Query: 384 SGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEF 443
           S N+   V                        +  +     ++   N+S+N +S    E 
Sbjct: 410 SYNEIGSVDGKNFDP-----------------LDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 444 LKNLSFMEFLDLSYNHFEG 462
               S +  ++L  N    
Sbjct: 453 FSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  207 bits (529), Expect = 1e-58
 Identities = 57/423 (13%), Positives = 128/423 (30%), Gaps = 61/423 (14%)

Query: 65  NSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIA 124
           +  G +   +L     +  L++     SG  P +I  ++ LE + L  +    +  L   
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 125 VNLPNLKALA---IGGNNFFGSIPNSLSNA--SNLEILDLTSNQLKGKVSIDFSSLKNLS 179
             +    +         ++  +  +       S+L    + S+  +  +          +
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
            +    NN+                                 +  ++  L+  +  F +G
Sbjct: 187 QIGQLSNNIT-------------------------------FVSKAVMRLTK-LRQFYMG 214

Query: 240 ANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL 299
            +              N      E  + + T       LK+L  + +YN      +P+ L
Sbjct: 215 NSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 300 GNLTKLVELPLSYNNL--------QGNIPSSLGNCQILRMFNASRNKL-TGALPHQLLSI 350
             L ++  + ++ N               +     + +++     N L T  +   L  +
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN 410
             L   L+   N L G LP   G+   L  L+++ NQ + +          +E L+ + N
Sbjct: 330 KKLG-MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 411 FFHGI-IPLSLSSLKSIKEFNVSSNNLSGL-------IPEFLKNLSFMEFLDLSYNHFEG 462
               I       S+  +   + S N +  +       +         +  ++LS N    
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 463 EVP 465
              
Sbjct: 448 FPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  169 bits (430), Expect = 5e-45
 Identities = 62/359 (17%), Positives = 120/359 (33%), Gaps = 32/359 (8%)

Query: 7   SNLIELRVSKNKL--------EGQIPEEIGSLLNLQTLAIDFNYLT-GQLPDFVGNLSAL 57
             +  + V+ N+         + Q   +      +Q + I +N L    +   +  +  L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 58  KVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSIC-NISSLEWIYLPFNRFS 116
            +   + N L GK+P   G    L  LN+  N+ +   P + C     +E +    N+  
Sbjct: 333 GMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK 390

Query: 117 GSLPLDIAVNLPNLKALAIGGNNF-------FGSIPNSLSNASNLEILDLTSNQLKGKVS 169
               +  A ++  + A+    N         F  +  +     N+  ++L++NQ+     
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 170 IDFSSLKNLSWLNLEQNNL-GMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIAN 228
             FS+   LS +NL  N L  +   +  D      N   L  I L  N+    L      
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRA 509

Query: 229 LS-STMTDFRIGANQISGTIPPGIRNLVNLIALTME------INKLHGTIPDTIGELKNL 281
            +   +    +  N  S   P    N   L    +        N+     P+ I    +L
Sbjct: 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT 340
            QL + +N ++  +   +     +  L +  N       S +       M+    +K  
Sbjct: 569 TQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (413), Expect = 8e-43
 Identities = 59/337 (17%), Positives = 105/337 (31%), Gaps = 32/337 (9%)

Query: 1   ANLSRYSNLIELRVSKNKL-EGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKV 59
           A+      +  + +  N L    +   +  +  L  L   +N L G+LP F G+   L  
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLAS 357

Query: 60  FYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGM-FPRSICNISSLEWIYLPFNRFSG- 117
             +  N +        G    + +L+   N+   +       ++S +  I   +N     
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 118 ------SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG----- 166
                  L         N+ ++ +  N          S  S L  ++L  N L       
Sbjct: 418 DGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 167 --KVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPH 224
               + +F +   L+ ++L  N L       L      T    L  I L  N F    P 
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKL-----TKLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

Query: 225 SIANLSS-----TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELK 279
              N S+              N+     P GI    +L  L +  N +   + + I    
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TP 587

Query: 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ 316
           N+  L + +N       S +    +     L Y+  Q
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 9e-11
 Identities = 16/133 (12%), Positives = 44/133 (33%), Gaps = 7/133 (5%)

Query: 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG- 414
           + +   ++      + + +   +  L + G   SG +P  +     LE L +  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 415 ---IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF--MEFLDLSYNHFEGEVPK-KG 468
                P  +S+  S ++      +      ++     F  +    ++ +  +  + K   
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 469 VFSNKTKISLQGN 481
           +    T+I    N
Sbjct: 181 ITLKDTQIGQLSN 193

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  249 bits (638), Expect = 2e-74
 Identities = 97/516 (18%), Positives = 185/516 (35%), Gaps = 45/516 (8%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           +   +  L  L +S+ +++        SL +L TL +  N +          LS+L+   
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGM-FPRSICNISSLEWIYLPFNRFSGSLP 120
            +  +L       +G L+ L +LNV  N       P    N+++LE + L  N+      
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 121 LDIAV--------------------------NLPNLKALAIGGNNFFGSIP-NSLSNASN 153
            D+ V                              L  L +  N    ++    +   + 
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 154 LEILDLTSNQLKGKVSI---DFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKV 210
           LE+  L   + + + ++   D S+L+ L  L +E+  L        D +      +++  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 211 ISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT 270
            SL +         S    +       +   +        +++L  L           G 
Sbjct: 287 FSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGG 338

Query: 271 IPDTIGELKNLQQLSLYNNSLQ--GSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQI 328
              +  +L +L+ L L  N L   G    S    T L  L LS+N +   + S+    + 
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ 397

Query: 329 LRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF 388
           L   +   + L       +       + LD+S+     +       L +L  L ++GN F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 389 SGVI-PVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447
                P   +   +L +L++S+     + P + +SL S++  N+S NN   L     K L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 448 SFMEFLDLSYNHFEGEVPK--KGVFSNKTKISLQGN 481
           + ++ LD S NH      +  +   S+   ++L  N
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  236 bits (604), Expect = 2e-69
 Identities = 92/488 (18%), Positives = 177/488 (36%), Gaps = 38/488 (7%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           S+L  L ++ N ++         L +LQ L      L       +G+L  LK   +  N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 67  L-GGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLE----WIYLPFNRFSGSLPL 121
           +   K+P     L NL  L++  N+   ++   +  +  +      + L  N  +   P 
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 122 DIAVNLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSI---DFSSLKN 177
             A     L  L +  N    ++    +   + LE+  L   + + + ++   D S+L+ 
Sbjct: 196 --AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 178 LSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHS------------ 225
           L  L +E+  L        D +      +++   SL +         S            
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

Query: 226 ------IANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH--GTIPDTIGE 277
                       ++           G       +L +L  L +  N L   G    +   
Sbjct: 314 CKFGQFPTLKLKSLKRLTF--TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 278 LKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSS-LGNCQILRMFNASR 336
             +L+ L L  N +   + S+   L +L  L   ++NL+     S   + + L   + S 
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 337 NKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVT 395
                A       +++L   L ++ N    +    +   L+NL  LD+S  Q   + P  
Sbjct: 431 THTRVAFNGIFNGLSSLE-VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 396 LSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL-SFMEFLD 454
            ++  SL+ LN+S N F  +       L S++  + S N++     + L++  S + FL+
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 455 LSYNHFEG 462
           L+ N F  
Sbjct: 550 LTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  221 bits (565), Expect = 7e-64
 Identities = 89/476 (18%), Positives = 155/476 (32%), Gaps = 31/476 (6%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
            +   L +S N L         S   LQ L +    +         +LS L    + GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           +          L +L  L   E   + +    I ++ +L+ + +  N        +   N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEI----LDLTSNQLKGKVSIDFSSLKNLSWLN 182
           L NL+ L +  N         L     + +    LDL+ N +       F  +  L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGE--LPHSIANLSSTMTDFRIGA 240
           L  N   +           +   + L+V  L   +F  E  L     +    + +  I  
Sbjct: 207 LRNNFDSLNVMKT-----CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 241 NQIS------GTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS 294
            +++        I      L N+ + ++    +              Q L L N      
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQF 319

Query: 295 IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT--GALPHQLLSITT 352
               L +L +     L++ + +G    S  +   L   + SRN L+  G         T+
Sbjct: 320 PTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 353 LTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV-TLSACVSLEYLNISRNF 411
           L   LDLS N +   +      L+ L  LD   +    +       +  +L YL+IS   
Sbjct: 375 LK-YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 412 FHGIIPLSLSSLKSIKEFNVSSNNLSGLI-PEFLKNLSFMEFLDLSYNHFEGEVPK 466
                    + L S++   ++ N+      P+    L  + FLDLS    E   P 
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (541), Expect = 2e-60
 Identities = 96/507 (18%), Positives = 167/507 (32%), Gaps = 63/507 (12%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTG-QLPDFVGNLSALKVFYIIGN 65
           S+L +L   +  L       IG L  L+ L +  N +   +LP++  NL+ L+   +  N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 66  SLGGKIPTTLGLLR---------------------------NLVDLNVGENRFSGMFPRS 98
            +     T L +L                             L  L +  N  S    ++
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 99  IC-NISSLEWIYLPFNRFSGS--LPLDIAVNLPNLKALAIGGNN------FFGSIPNSLS 149
               ++ LE   L    F     L       L  L  L I          +   I +  +
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 150 NASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLT------ 203
             +N+    L S  ++     DFS       L L     G      L  +  LT      
Sbjct: 280 CLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337

Query: 204 -------NCSSLKVISLYANQ--FGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNL 254
                  +  SL+ + L  N   F G    S    +S +    +  N +  T+      L
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVI-TMSSNFLGL 395

Query: 255 VNLIALTMEINKLHGTIP-DTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYN 313
             L  L  + + L           L+NL  L + +   + +       L+ L  L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 314 NLQGNI-PSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV 372
           + Q N  P      + L   + S+ +L    P    S+++L   L++S+N          
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMSHNNFFSLDTFPY 514

Query: 373 GNLKNLVKLDISGNQFSGVIPVTLSACV-SLEYLNISRNFFHGIIPLS--LSSLKSIKEF 429
             L +L  LD S N         L     SL +LN+++N F         L  +K  ++ 
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 574

Query: 430 NVSSNNLSGLIPEFLKNLSFMEFLDLS 456
            V    +    P   + +  +   +++
Sbjct: 575 LVEVERMECATPSDKQGMPVLSL-NIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (477), Expect = 1e-51
 Identities = 75/460 (16%), Positives = 143/460 (31%), Gaps = 50/460 (10%)

Query: 76  GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAI 135
            L  +  +L++  N    +   S  +   L+ + L               +L +L  L +
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLIL 83

Query: 136 GGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTAND 195
            GN        + S  S+L+ L      L    +     LK L  LN+  N +       
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-----QS 138

Query: 196 LDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSS---TMTDFRIGANQISGTIPPGIR 252
                + +N ++L+ + L +N+        +  L           +  N ++  I PG  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF 197

Query: 253 NLVNLIALTMEINKLHGTIP-DTIGELKNLQQLSLYNNSLQGSI---PSSLGNLTKLVEL 308
             + L  LT+  N     +    I  L  L+   L     +            L  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 309 PLSYNNLQ------GNIPSSLGNCQILRMFNASRNKLTGALPHQ-LLSITTLTLS----- 356
            +    L        +I         +  F+     +              L L      
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 357 ------------LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ--FSGVIPVTLSACVSL 402
                       L  ++N    +      +L +L  LD+S N   F G    +     SL
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 403 EYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIP-EFLKNLSFMEFLDLSYNHFE 461
           +YL++S N    +   +   L+ ++  +   +NL  +       +L  + +LD+S+ H  
Sbjct: 376 KYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 462 GEVPKKGVFSNKTK---ISLQGNVKLCGGIDELHLPSCPS 498
                 G+F+  +    + + GN                +
Sbjct: 435 VAFN--GIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRN 471

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.4 bits (243), Expect = 2e-21
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 335 SRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV 394
                   +P  L   T    +LDLS N L         +   L  LD+S  +   +   
Sbjct: 15  MELNFY-KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 395 TLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLD 454
              +   L  L ++ N    +   + S L S+++      NL+ L    + +L  ++ L+
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 455 LSYNHFEG 462
           +++N  + 
Sbjct: 131 VAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 25/159 (15%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
            +   NL  L +S+ +LE   P    SL +LQ L +  N            L++L+V   
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL- 121
             N +       L                           SSL ++ L  N F+ +    
Sbjct: 526 SLNHIMTSKKQELQHFP-----------------------SSLAFLNLTQNDFACTCEHQ 562

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLT 160
                + + + L +       + P+       +  L++T
Sbjct: 563 SFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  223 bits (570), Expect = 1e-64
 Identities = 104/514 (20%), Positives = 186/514 (36%), Gaps = 44/514 (8%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
            SR  NL  L +++ ++     +   S   L TL +  N L       +    ALK  + 
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD 122
           I   +       L   + L  L +G N  S +          L+ +    N        D
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

Query: 123 IAVNLPNLKALAIG-GNNFFGSIPNSLSNASNLEILDLTSNQLKGKV--SIDFSSLKNLS 179
           ++ +L     L++    N    I     +++  + L+    Q    +   +  S++++L 
Sbjct: 173 MS-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNC-SSLKVISLYANQFGGELPHSIANLSSTMTDFRI 238
               E  +       D+    F   C  S++ I+L  + F     ++    S  + +  +
Sbjct: 232 LGTFEDMDD-----EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-LQELDL 285

Query: 239 GANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELK------------------- 279
            A  +S  +P G+  L  L  L +  NK       +                        
Sbjct: 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 280 ------NLQQLSLYNNSLQGS--IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRM 331
                 NL++L L ++ ++ S      L NL+ L  L LSYN        +   C  L +
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391
            + +  +L             L   L+LS++LL+ S       L  L  L++ GN F   
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 392 IPV---TLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLS 448
                 +L     LE L +S      I   + +SLK +   ++S N L+    E L +L 
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 449 FMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGN 481
              +L+L+ NH    +P    + S +  I+L+ N
Sbjct: 525 -GIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (552), Expect = 4e-62
 Identities = 89/488 (18%), Positives = 150/488 (30%), Gaps = 23/488 (4%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           ++   L  S N L          L+NL  L +    +     D   +   L    +  N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L     T L   + L  L   +   S +    + N  +LE +YL  N  S S+ L     
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFP 151

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEI--LDLTSNQLKGKVSIDFSSLKNLSWLNLE 184
              LK L    N         +S+        L+L  N + G +            LN  
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFG 210

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLS-STMTDFRIGANQI 243
                +     L   T      SL + +          P     L   ++    +  +  
Sbjct: 211 GTQNLLVIFKGLKNSTI----QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 244 SGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLT 303
                        L  L +    L   +P  +  L  L++L L  N  +     S  N  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 304 KLVELPLSYNNLQGNIPS-SLGNCQILRMFNASRNKLT--GALPHQLLSITTLTLSLDLS 360
            L  L +  N  +  + +  L N + LR  + S + +        QL +++ L  SL+LS
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ-SLNLS 384

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIP-VTLSACVSLEYLNISRNFFHGIIPLS 419
            N               L  LD++  +               L+ LN+S +         
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 420 LSSLKSIKEFNVSSNNLSGLI---PEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTK- 475
              L +++  N+  N+           L+ L  +E L LS+            F++    
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAFTSLKMM 502

Query: 476 --ISLQGN 481
             + L  N
Sbjct: 503 NHVDLSHN 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  212 bits (542), Expect = 1e-60
 Identities = 88/472 (18%), Positives = 169/472 (35%), Gaps = 23/472 (4%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
           LS    L  L   +  +       + +   L++L +  N+++            LKV   
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 63  IGNSLGGKIPTTLGLLRNL--VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
             N++       +  L+    + LN+  N  +G       + +  + +     +    + 
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 121 LDIA-VNLPNLKALAIGGNNFFGSIPNSLSN--ASNLEILDLTSNQLKGKVSIDFSSLKN 177
             +    + +L        +     P         ++E ++L  +      S  F     
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279

Query: 178 LSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFR 237
           L  L+L   +L        +  + L   S+LK + L AN+F      S +N  S +T   
Sbjct: 280 LQELDLTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLS 331

Query: 238 IGANQISGTIPPG-IRNLVNLIALTMEINKLH--GTIPDTIGELKNLQQLSLYNNSLQGS 294
           I  N     +  G + NL NL  L +  + +         +  L +LQ L+L  N     
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 295 IPSSLGNLTKLVELPLSYNNLQGNIP-SSLGNCQILRMFNASRNKLTGALPHQLLSITTL 353
              +     +L  L L++  L+     S   N  +L++ N S + L  +       +  L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 354 TLSLDLSNNLLNGSLPLQVG---NLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN 410
              L+L  N        +      L  L  L +S    S +     ++   + ++++S N
Sbjct: 452 Q-HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG 462
                   +LS LK I   N++SN++S ++P  L  LS    ++L  N  + 
Sbjct: 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  193 bits (492), Expect = 1e-53
 Identities = 83/457 (18%), Positives = 151/457 (33%), Gaps = 31/457 (6%)

Query: 54  LSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFN 113
            ++ +      N L     TT   L NL  L++   +   +   +  +   L+ + L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 114 RFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFS 173
                +          LK L              L N   LE L L SN +         
Sbjct: 92  PLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 174 SLKNLSWLNLEQNNLGMGTANDLDFVTFLT-------------------NCSSLKVISLY 214
             + L  L+ + N +   +  D+  +   T                   + +  + ++  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 215 ANQFGGELPHSIANLS-STMTDFRIGANQISGTIPPGIRNL--VNLIALTMEINKLHGTI 271
             Q    +   + N +  ++              P     L  +++ ++ ++ +      
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 272 PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRM 331
            +T      LQ+L L    L   +PS L  L+ L +L LS N  +     S  N   L  
Sbjct: 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS--LPLQVGNLKNLVKLDISGNQFS 389
            +   N     L    L        LDLS++ +  S    LQ+ NL +L  L++S N+  
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 390 GVIPVTLSACVSLEYLNISRNFFHGIIPLS-LSSLKSIKEFNVSSNNLSGLIPEFLKNLS 448
            +       C  LE L+++          S   +L  +K  N+S + L     +    L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 449 FMEFLDLSYNHFEGEVPKK-GVFSNKTK---ISLQGN 481
            ++ L+L  NHF     +K        +   + L   
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (403), Expect = 1e-41
 Identities = 70/446 (15%), Positives = 142/446 (31%), Gaps = 48/446 (10%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIG--SLLNLQTLAIDFNYLTGQLPDFVGNLSALKV 59
                +    L     +    I + +   ++ +L     +        P     L  + V
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 60  FYII--GNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSG 117
             I    +        T      L +L++     S   P  +  +S+L+ + L  N+F  
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFEN 315

Query: 118 SLPLDIAVNLPNLKALAIGGNNFFGSI-PNSLSNASNLEILDLTSNQLKGKVSID--FSS 174
              +  + N P+L  L+I GN     +    L N  NL  LDL+ + ++     +    +
Sbjct: 316 LCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMT 234
           L +L  LNL  N                  C  L+++ L   +   +   S       + 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAF------KECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 235 DFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTI---PDTIGELKNLQQLSLYNNSL 291
              +  + +  +       L  L  L ++ N          +++  L  L+ L L    L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 292 QGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSIT 351
                 +  +L  +  + LS+N L  +   +L + + +                      
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY--------------------- 527

Query: 352 TLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNF 411
                L+L++N ++  LP  +  L     +++  N        T S    LE+   +   
Sbjct: 528 -----LNLASNHISIILPSLLPILSQQRTINLRQNPLDC----TCSNIYFLEWYKENMQK 578

Query: 412 FHGIIPLSLSSLKSIKEFNVSSNNLS 437
                     +   ++   +S   LS
Sbjct: 579 LEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 1e-28
 Identities = 42/264 (15%), Positives = 71/264 (26%), Gaps = 30/264 (11%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSL 286
             L ++        N +          L+NL  L +   +++    DT      L  L L
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 287 YNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPH- 345
             N L     ++L     L  L      +       L N + L       N ++      
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 346 --QLLSITTLTLS----------------------LDLSNNLLNGSLPLQVGNLKNLVKL 381
                 +  L                         L+L+ N +   +     +      L
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSL 207

Query: 382 DISGNQFSGVIPVTLSAC--VSLEYLNISRNFFHGIIPLSLSSLK--SIKEFNVSSNNLS 437
           +  G Q   VI   L      SL            I P     L   S++  N+  +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 438 GLIPEFLKNLSFMEFLDLSYNHFE 461
            +        S ++ LDL+  H  
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (267), Expect = 3e-24
 Identities = 43/217 (19%), Positives = 73/217 (33%), Gaps = 6/217 (2%)

Query: 284 LSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGAL 343
            +  N  L   IP +L N T+   L  S+N L     ++      L   + +R ++    
Sbjct: 17  YNCENLGLN-EIPGTLPNSTE--CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 344 PHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE 403
                S   L  +L L+ N L       +   K L  L       S +  + L    +LE
Sbjct: 74  EDTFQSQHRLD-TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 404 YLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFME--FLDLSYNHFE 461
            L +  N    I        + +K  +  +N +  L  E + +L       L+L+ N   
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 462 GEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPS 498
           G  P     +    ++  G   L      L   +  S
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 3e-19
 Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 9/158 (5%)

Query: 327 QILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGN 386
           ++ + +N     L   +P  L + T     L+ S N+L          L NL  LD++  
Sbjct: 12  EVNKTYNCENLGLN-EIPGTLPNSTE---CLEFSFNVLPTIQNTTFSRLINLTFLDLTRC 67

Query: 387 QFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKN 446
           Q   +   T  +   L+ L ++ N    +   +LS  K++K        +S +    L N
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 447 LSFMEFLDLSYNHFEGEVPKKGVFSNKTK---ISLQGN 481
              +E L L  NH      K        K   +  Q N
Sbjct: 128 QKTLESLYLGSNHISS--IKLPKGFPTEKLKVLDFQNN 163

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  220 bits (562), Expect = 8e-62
 Identities = 79/488 (16%), Positives = 153/488 (31%), Gaps = 55/488 (11%)

Query: 5   RYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIG 64
             S+L++  +++N     I ++    L    +    N +T  +   +  L+ L++ Y   
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFAN 457

Query: 65  NSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIA 124
           +              N         +       S  N+  L  + L        LP  + 
Sbjct: 458 SPFTYDNIAVDWEDANS-----DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 125 VNLPNLKALAIGGNNF---------FGSIPNSLSNASNLEILDLTSNQLKG-KVSIDFSS 174
            +LP L++L I  N           +  + +       ++I  +  N L+    S     
Sbjct: 513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMT 234
           +  L  L+   N +          +        L  + L  NQ   E+P      +  + 
Sbjct: 572 MVKLGLLDCVHNKVR--------HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622

Query: 235 DFRIGANQISGTIPP--GIRNLVNLIALTMEINKLHGTIPDT-----IGELKNLQQLSLY 287
                 N++   IP     +++  + ++    NK+     +        +  N   ++L 
Sbjct: 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 288 NNSLQGSIPSSLGNLTKLVELPLSYNNLQ-------GNIPSSLGNCQILRMFNASRNKLT 340
            N +Q          + +  + LS N +             +  N  +L   +   NKLT
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 341 GALPHQLLSITTLTL-SLDLSNNLLNGSLPLQVGNLKNLVKLDI------SGNQFSGVIP 393
             L     + T   L ++D+S N  + S P Q  N   L    I       GN+     P
Sbjct: 742 S-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 394 VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL-IPEFLKNLSF-ME 451
             ++ C SL  L I  N    +       L      +++ N    + +      +   M 
Sbjct: 800 TGITTCPSLIQLQIGSNDIRKVDEKLTPQLY---ILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 452 FLDLSYNH 459
            L      
Sbjct: 857 VLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  209 bits (533), Expect = 6e-58
 Identities = 74/491 (15%), Positives = 158/491 (32%), Gaps = 52/491 (10%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           +L     +  L ++    +G++P+ IG L  L+ L+   +  T     F        +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 62  IIGNSLGGKI-PTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSG--- 117
              + +        L   + L   ++ ++  +      +  I     I L   +      
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTN 435

Query: 118 ---SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSS 174
               +   I   L  L+ +    + F        + A + E  +    +      + +S+
Sbjct: 436 RITFISKAIQ-RLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGG---------ELPHS 225
           LK+L+ + L      M    D     FL +   L+ +++  N+             L   
Sbjct: 490 LKDLTDVELYNCPN-MTQLPD-----FLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 226 IANLSSTMTDFRIGANQISG-TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQL 284
                  +  F +G N +        ++ +V L  L    NK+     +  G    L  L
Sbjct: 544 EDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDL 600

Query: 285 SLYNNSLQGSIPSSLG-NLTKLVELPLSYNNLQGNIPS--SLGNCQILRMFNASRNKLTG 341
            L  N ++  IP        ++  L  S+N L+  IP+  +  +  ++   + S NK+  
Sbjct: 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 342 ALPHQLLSITTLTL----SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS-------G 390
              +   S+         ++ LS N +             +  + +S N  +        
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 391 VIPVTLSACVSLEYLNISRNFFHGIIP-LSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF 449
                      L  +++  N    +      ++L  +   +VS N  S   P    N S 
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777

Query: 450 MEFLDLSYNHF 460
           ++   + +   
Sbjct: 778 LKAFGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  201 bits (512), Expect = 4e-55
 Identities = 67/474 (14%), Positives = 131/474 (27%), Gaps = 92/474 (19%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
             + R + L  +  + +              N       +            NL  L   
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD-----YAKQYENEELSWSNLKDLTDV 496

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            +       ++P  L  L  L  LN+  NR                              
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ------------------------ 532

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG-KVSIDFSSLKNLS 179
                               +  + +       ++I  +  N L+    S     +  L 
Sbjct: 533 ----------------LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
            L+   N +          +        L  + L  NQ   E+P      +  +      
Sbjct: 577 LLDCVHNKVR--------HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFS 627

Query: 240 ANQISGTIPP--GIRNLVNLIALTMEINKLHGTIPDT-----IGELKNLQQLSLYNNSLQ 292
            N++   IP     +++  + ++    NK+     +        +  N   ++L  N +Q
Sbjct: 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 293 GSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITT 352
                     + +  + LS N +  +IP +                          +   
Sbjct: 687 KFPTELFATGSPISTIILSNNLMT-SIPENSL----------------KPKDGNYKNTYL 729

Query: 353 LTLSLDLSNNLLNG-SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISR-- 409
           LT ++DL  N L   S   +   L  L  +D+S N FS   P        L+   I    
Sbjct: 730 LT-TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787

Query: 410 ----NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNH 459
               N      P  +++  S+ +  + SN++  +  +    L     LD++ N 
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  180 bits (459), Expect = 4e-48
 Identities = 61/414 (14%), Positives = 122/414 (29%), Gaps = 51/414 (12%)

Query: 65  NSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIA 124
           +  G +    L     +  L++      G  P +I  ++ L+ +    +  + S  L   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 125 VNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLE 184
             L    +               L     L + DL  + +    + +   +K  S ++L+
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLK 426

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
              +G                          N+    +  +I  L+  +       +  +
Sbjct: 427 DTQIG-----------------------NLTNRITF-ISKAIQRLTK-LQIIYFANSPFT 461

Query: 245 GTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
                     V+      +  K +     +   LK+L  + LYN      +P  L +L +
Sbjct: 462 YDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 305 LVELPLSYNNLQG---------NIPSSLGNCQILRMFNASRNKLTGALPHQLLS-ITTLT 354
           L  L ++ N              +         +++F    N L        L  +  L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 355 LSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414
             LD  +N +   L    G    L  L +  NQ   +     +    +E L  S N    
Sbjct: 577 -LLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 415 I-IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF-----MEFLDLSYNHFEG 462
           I    +  S+  +   + S N +         ++          + LSYN  + 
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (312), Expect = 1e-29
 Identities = 34/241 (14%), Positives = 74/241 (30%), Gaps = 33/241 (13%)

Query: 260 LTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNI 319
              E++         +     +  LSL     +G +P ++G LT+L  L    ++   + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 320 PSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG------------- 366
                      M    ++++        L         DL  + +N              
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 367 ---------------SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNF 411
                           +   +  L  L  +  + + F+          V  E  N     
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAK 478

Query: 412 FHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFS 471
            +    LS S+LK + +  + +      +P+FL +L  ++ L+++ N        K  ++
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 472 N 472
            
Sbjct: 539 R 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 21/189 (11%)

Query: 3   LSRYSNLIELRVSKNKLE-------GQIPEEIGSLLNLQTLAIDFNYLTGQLPD--FVGN 53
            +  S +  + +S N +                +   L T+ + FN LT  L D      
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATT 751

Query: 54  LSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE------NRFSGMFPRSICNISSLEW 107
           L  L    +  N      PT       L    +        NR    +P  I    SL  
Sbjct: 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 108 IYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK 167
           + +  N     +   +    P L  L I  N        S+       +  L  ++ +  
Sbjct: 811 LQIGSNDIR-KVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

Query: 168 VSIDFSSLK 176
              D   ++
Sbjct: 867 RGCDALGIE 875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  204 bits (522), Expect = 8e-58
 Identities = 87/471 (18%), Positives = 163/471 (34%), Gaps = 34/471 (7%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTG-QLPDFVGNLSALKVFYIIGN 65
           ++L  L   + KL       IG L+ L+ L +  N++   +LP +  NL+ L    +  N
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 66  SLGGKIPTTLGLLRNL----VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
            +       L  LR      + L++  N    +  ++   I  L  + L  N  S ++  
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMK 222

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLE--------ILDLTSNQLKGKVSIDFS 173
               NL  L    +    F       +   S +E           LT         + F 
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 174 SLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTM 233
            L N+S ++L   ++         ++  +      + +S+   Q        +  L    
Sbjct: 283 CLANVSAMSLAGVSI--------KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL---- 330

Query: 234 TDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELK--NLQQLSLYNNSL 291
               +  N+ S  I      L +L  L +  N L  +   +  +L   +L+ L L  N  
Sbjct: 331 KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 292 QGSIPSSLGNLTKLVELPLSYNNLQGNIP-SSLGNCQILRMFNASRNKLTGALPHQLLSI 350
              + ++   L +L  L   ++ L+     S+  + + L   + S            L +
Sbjct: 389 I-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 351 TTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISR 409
           T+L  +L ++ N    +    V  N  NL  LD+S  Q   +          L+ LN+S 
Sbjct: 448 TSLN-TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 410 NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHF 460
           N    +     + L S+   + S N +             + F +L+ N  
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  195 bits (497), Expect = 2e-54
 Identities = 96/492 (19%), Positives = 161/492 (32%), Gaps = 33/492 (6%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           S+   + +S N L+        +   LQ L +    +          L  L    + GN 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           +    P +   L +L +L   E + + +    I  + +L+ + +  N            N
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNL----EILDLTSNQLKGKVSIDFSSLKNLSWLN 182
           L NL  + +  N       N L            LD++ N +       F  +  L  L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210

Query: 183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGEL------PHSIANLSS-TMTD 235
           L  N       +     T L N + L V  L   +F  E       P  +  L   T+ +
Sbjct: 211 LRGNFN-----SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 236 FRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSI 295
           FR+               L N+ A+++    +     + + +    Q LS+    L+   
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 296 PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTL 355
              L  L  L    L+ N    +I         L   + SRN L+ +       + T +L
Sbjct: 324 TLDLPFLKSLT---LTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 356 -SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV-TLSACVSLEYLNISRNFFH 413
             LDLS N     +      L+ L  LD   +    V       +   L YL+IS     
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 414 GIIPLSLSSLKSIKEFNVSSNNLSGLIP-EFLKNLSFMEFLDLSYNHFEGEVPKKGVFSN 472
                    L S+    ++ N+           N + + FLDLS    E      GVF  
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW--GVFDT 495

Query: 473 KTK---ISLQGN 481
             +   +++  N
Sbjct: 496 LHRLQLLNMSHN 507

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (415), Expect = 3e-43
 Identities = 84/442 (19%), Positives = 149/442 (33%), Gaps = 48/442 (10%)

Query: 76  GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAI 135
            +  +  ++++  N    +   S  N S L+W+ L       ++       L +L  L +
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLIL 87

Query: 136 GGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTAND 195
            GN      P S S  ++LE L     +L    S     L  L  LN+  N +     + 
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI-----HS 142

Query: 196 LDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFR---IGANQISGTIPPGIR 252
                + +N ++L  + L  N       + +  L           +  N I   I     
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 253 NLVNLIALTMEINKLHGTIPDT-IGELKNLQQLSLYNNSLQGSI------PSSLGNLTKL 305
             + L  LT+  N     I  T +  L  L    L     +         PS +  L  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 306 V--ELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPH--------------QLLS 349
              E  L+Y N   +          +   + +   +                    QL  
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 350 ITTLTLS----LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLS--ACVSLE 403
             TL L     L L+ N  + S       L +L  LD+S N  S     + S     SL 
Sbjct: 322 FPTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 404 YLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIP-EFLKNLSFMEFLDLSYNHFEG 462
           +L++S N    I+  +   L+ ++  +   + L  +       +L  + +LD+SY + + 
Sbjct: 380 HLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 463 EVPKKGVFSNKTKI---SLQGN 481
           +    G+F   T +    + GN
Sbjct: 439 DFD--GIFLGLTSLNTLKMAGN 458

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  129 bits (327), Expect = 8e-32
 Identities = 62/345 (17%), Positives = 118/345 (34%), Gaps = 20/345 (5%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNY--LTGQLPDFVGNLSALK 58
           A L  +  ++     +  LE   P  +  L ++        Y             L+ + 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 59  VFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGS 118
              + G S+  K    +        L++   +          ++  L+ + L  N+ S S
Sbjct: 289 AMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSIS 343

Query: 119 LPLDIAVNLPNLKALAIGGNNFFGSIPNSLSN--ASNLEILDLTSNQLKGKVSIDFSSLK 176
                 V LP+L  L +  N    S   S S+   ++L  LDL+ N     +S +F  L+
Sbjct: 344 FKK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399

Query: 177 NLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF 236
            L  L+ + + L       +   +   +   L  + +       +       L+S +   
Sbjct: 400 ELQHLDFQHSTL-----KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTL 453

Query: 237 RIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSI 295
           ++  N         +  N  NL  L +   +L          L  LQ L++ +N+L    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 296 PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT 340
            S    L  L  L  S+N ++ +        + L  FN + N + 
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (291), Expect = 3e-27
 Identities = 46/292 (15%), Positives = 83/292 (28%), Gaps = 39/292 (13%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSL 286
            ++ S+  +  +  N +         N   L  L +   ++          L +L  L L
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 287 YNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQ 346
             N +Q   P S   LT L  L      L       +G    L+  N + N +       
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 347 LL----SITTLTLS------------------------LDLSNNLLNGSLPLQVGNLKNL 378
                 ++  + LS                        LD+S N ++  +  Q      L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKL 206

Query: 379 VKLDISGNQFSGVIP-VTLSACVSLEYLNISRNFFHGIIPLSLSSLK--------SIKEF 429
            +L + GN  S  I    L     L    +    F     L +            +I EF
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 430 NVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
            ++  N           L+ +  + L+    +  +           +S+   
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRC 317

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.0 bits (229), Expect = 1e-19
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 6/156 (3%)

Query: 317 GNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLK 376
           G++   +     +  +     KL+  +P  + S T    ++DLS N L         N  
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPSSTK---NIDLSFNPLKILKSYSFSNFS 56

Query: 377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
            L  LD+S  +   +          L  L ++ N      P S S L S++        L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 437 SGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSN 472
           + L    +  L  ++ L++++N           FSN
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSN 151

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  174 bits (442), Expect = 5e-47
 Identities = 96/493 (19%), Positives = 170/493 (34%), Gaps = 45/493 (9%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
              +  L  L +S+ +++        SL +L TL +  N +          LS+L+    
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRF-SGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           +  +L       +G L+ L +LNV  N   S   P    N+++LE + L  N+   S+  
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

Query: 122 DIAVNLPNLKALAIG---GNNFFGSIPNSLSNASNLEILDLTSNQLKGKV---------- 168
                L  +  L +      N    I         L  L L +N     V          
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 169 ------------------SIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKV 210
                               D S+L+ L  L +E+  L        D +      +++  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 211 ISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT 270
            SL +         S       +        Q           L +L  LT   NK    
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNA 340

Query: 271 IPDTIGELKNLQQLSLYNNSLQ--GSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQI 328
             +   +L +L+ L L  N L   G    S    T L  L LS+N +   + S+    + 
Sbjct: 341 FSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 329 LRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF 388
           L   +   + L       +       + LD+S+     +       L +L  L ++GN F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 389 SGVI-PVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447
                P   +   +L +L++S+     + P + +SL S++  N++SN L  +       L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 448 SFMEFLDLSYNHF 460
           + ++ + L  N +
Sbjct: 518 TSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (409), Expect = 1e-42
 Identities = 93/493 (18%), Positives = 166/493 (33%), Gaps = 34/493 (6%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
            +   L +S N L         S   LQ L +    +         +LS L    + GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           +          L +L  L   E   + +    I ++ +L+ + +  N        +   N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEI----LDLTSNQLKGKVSIDFSSLKNLSWLN 182
           L NL+ L +  N         L     + +    LDL+ N +       F  +  L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206

Query: 183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGE------LPHSIANLSS-TMTD 235
           L  N   +         T +   + L+V  L   +F  E         ++  L + T+ +
Sbjct: 207 LRNNFDSLNVMK-----TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 236 FRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS 294
           FR+            +   L N+ + ++    +   + D        Q L L N      
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY-NFGWQHLELVNCKFGQF 319

Query: 295 IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG-ALPHQLLSITTL 353
               L +L +L     + N        S  +   L   + SRN L+      Q    TT 
Sbjct: 320 PTLKLKSLKRLT---FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 354 TLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV-TLSACVSLEYLNISRNFF 412
              LDLS N +  ++      L+ L  LD   +    +       +  +L YL+IS    
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 413 HGIIPLSLSSLKSIKEFNVSSNNLSGLI-PEFLKNLSFMEFLDLSYNHFEGEVPKKGVFS 471
                   + L S++   ++ N+      P+    L  + FLDLS    E ++     F+
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLS-PTAFN 491

Query: 472 NKTK---ISLQGN 481
           + +    +++  N
Sbjct: 492 SLSSLQVLNMASN 504

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (361), Expect = 3e-36
 Identities = 80/412 (19%), Positives = 147/412 (35%), Gaps = 32/412 (7%)

Query: 76  GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAI 135
            L  +  +L++  N    +   S  +   L+ + L       ++      +L +L  L +
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 136 GGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTAND 195
            GN        + S  S+L+ L      L    +     LK L  LN+  N +       
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-----QS 138

Query: 196 LDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFR---IGANQISGTIPPGIR 252
                + +N ++L+ + L +N+        +  L           +  N ++  I PG  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 253 NLVNLIALTMEINKLHGTIPDT-IGELKNLQQLSLY------NNSLQGSIPSSLGNLTKL 305
             + L  LT+  N     +  T I  L  L+   L         +L+    S+L  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 306 V--ELPLSYNNLQGN-IPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNN 362
              E  L+Y +   + I         +  F+     +         S       L+L N 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNC 314

Query: 363 LLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH--GIIPLSL 420
                       LK+L +L  + N+       +     SLE+L++SRN     G    S 
Sbjct: 315 KFGQ---FPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSN 472
               S+K  ++S N +  +   FL  L  +E LD  +++ + ++ +  VF +
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLK-QMSEFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 14/247 (5%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSL 286
            NL  +  +  +  N +         +   L  L +   ++          L +L  L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 287 YNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT-GALPH 345
             N +Q     +   L+ L +L     NL       +G+ + L+  N + N +    LP 
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 346 QLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNL----VKLDISGNQFSGVIPVTLSACVS 401
              ++T L   LDLS+N +       +  L  +    + LD+S N  + + P      + 
Sbjct: 144 YFSNLTNLE-HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IR 201

Query: 402 LEYLNISRNFFHGIIPL-------SLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLD 454
           L  L +  NF    +          L   + +     +  NL       L+ L  +   +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 455 LSYNHFE 461
               + +
Sbjct: 262 FRLAYLD 268

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.4 bits (191), Expect = 5e-15
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 8/153 (5%)

Query: 332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391
           +          +P  L   T    +LDLS N L         +   L  LD+S  +   +
Sbjct: 12  YQCMELNFY-KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 392 IPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFME 451
                 +   L  L ++ N    +   + S L S+++      NL+ L    + +L  ++
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 452 FLDLSYNHFEGEVPKKGVFSNKTK---ISLQGN 481
            L++++N  +        FSN T    + L  N
Sbjct: 128 ELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSN 159

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  176 bits (448), Expect = 8e-47
 Identities = 94/515 (18%), Positives = 179/515 (34%), Gaps = 42/515 (8%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQL-PDFVGNLSALKVFYIIGN 65
           +    L +S N +          L  LQ L +   Y    +  +   NL  L++  +  +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 66  SLGGKIPTTLGLLRNLVDLNVGENRFSGMF--PRSICNISSLEWIYLPFNRFSGSLPLDI 123
            +    P     L +L +L +     S          N+ +L  + L  N+         
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 124 AVNLPNLKALAIGGNNFFGSIPNSLSN--ASNLEILDLTSNQLKGKVSIDFSSLKN---- 177
              L +LK++    N  F    + L       L    L +N L  +VS+D+    N    
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 178 --LSWLNLEQNNLGMGTANDLD------FVTFLTNCSSLKVISLYANQFGGELPHSIANL 229
             L  L++  N   +    +            L     +       +       ++ A L
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 230 -SSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLY 287
             S++    +    +  ++   +   L +L  L +  NK++    +    L NLQ L+L 
Sbjct: 264 ARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 288 NNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT--GALPH 345
            N L     S+   L K+  + L  N++      +    + L+  +   N LT    +P 
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382

Query: 346 ---------QLLSITTLTLS---LDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVI 392
                    +L+++  + L+   + LS N L     L     + +L  L ++ N+FS   
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 393 P-VTLSACVSLEYLNISRNFFH-----GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKN 446
              T S   SLE L +  N         +       L  ++   ++ N L+ L P    +
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502

Query: 447 LSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
           L+ +  L L+ N     +    + +N   + +  N
Sbjct: 503 LTALRGLSLNSNRLT-VLSHNDLPANLEILDISRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (404), Expect = 4e-41
 Identities = 84/469 (17%), Positives = 161/469 (34%), Gaps = 34/469 (7%)

Query: 22  QIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKI-PTTLGLLRN 80
           Q+P+    L   + L + FNY+          L  L++  +        I       L N
Sbjct: 18  QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 81  LVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFS-GSLPLDIAVNLPNLKALAIGGNN 139
           L  L++G ++   + P +   +  L  + L F   S   L      NL  L  L +  N 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 140 FFG-SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDF 198
                +  S    ++L+ +D +SNQ+     +    L+ L    L   +L   +      
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIF---LVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 199 VTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLI 258
           V +    +  + + L            ++    T+      +N IS +    +    +++
Sbjct: 192 VDWGKCMNPFRNMVLEILD--------VSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 259 ALTMEINKLHGTIPDTIGELK--NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ 316
                 + +     +T   L   +++ L L +  +          L  L  L L+YN + 
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

Query: 317 GNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLK 376
                +      L++ N S N L          +  +   +DL  N +          L+
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA-YIDLQKNHIAIIQDQTFKFLE 362

Query: 377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
            L  LD+  N  +     T+    S+  + +S N    +  ++L++       ++S N L
Sbjct: 363 KLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTA----NLIHLSENRL 413

Query: 437 SGL-IPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKI---SLQGN 481
             L I  FL  +  ++ L L+ N F          S    +    L  N
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFS-SCSGDQTPSENPSLEQLFLGEN 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  135 bits (342), Expect = 3e-33
 Identities = 98/561 (17%), Positives = 175/561 (31%), Gaps = 63/561 (11%)

Query: 7   SNLIELRVSKNKLEG-QIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSA--LKVFYII 63
             L  L +SKN++    +    G L +L+++    N +       +  L    L  F + 
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 64  GNSLGGKIPTTLGLLRN------LVDLNVGENRFSGMFPRSICN------------ISSL 105
            NSL  ++    G   N      L  L+V  N ++     +  N               +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 106 EWIYLPFNRFSGSLPLDIAVNLP--NLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ 163
                 F+        +    L   +++ L +     F           +L++L+L  N+
Sbjct: 243 MGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 164 LKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELP 223
           +       F  L NL  LNL  N L      +L    F      +  I L  N       
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLL-----GELYSSNF-YGLPKVAYIDLQKNHIAIIQD 355

Query: 224 HSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQ 283
            +   L   +    +  N ++      I  + ++  + +  NKL       +        
Sbjct: 356 QTFKFLEK-LQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINL----TANL 405

Query: 284 LSLYNNSLQG-SIPSSLGNLTKLVELPLSYNNLQGNIPSSL-GNCQILRMFNASRNKLTG 341
           + L  N L+   I   L  +  L  L L+ N                L       N L  
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 342 ALPHQLLSITTLTLS----LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLS 397
           A   +L       LS    L L++N LN   P    +L  L  L ++ N+ + +    L 
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525

Query: 398 ACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSY 457
           A  +LE L+ISRN      P    SL      +++ N        F+       F++   
Sbjct: 526 A--NLEILDISRNQLLAPNPDVFVSLSV---LDITHNK-------FICECELSTFINWLN 573

Query: 458 NHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVV 517
           +                  S  G       +  L    C  +  +K     L ++  V +
Sbjct: 574 HTNVTIAGPPADIYCVYPDSFSGV-----SLFSLSTEGCDEEEVLKSLKFSLFIVCTVTL 628

Query: 518 SCLILSSCLTIIYARRRRFAH 538
           +  +++      +       +
Sbjct: 629 TLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (275), Expect = 4e-25
 Identities = 67/412 (16%), Positives = 143/412 (34%), Gaps = 31/412 (7%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSL--LNLQTLAIDFNYLTGQLPDFVGNLSALKV 59
           +L    +++      + ++         L   +++ L +   ++          L  LKV
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 60  FYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSL 119
             +  N +          L NL  LN+  N    ++  +   +  + +I L  N  +  +
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-II 353

Query: 120 PLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLS 179
                  L  L+ L +  N        ++    ++  + L+ N+L     I+ +     +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLT----AN 404

Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
            ++L +N L      +LD + FL     L+++ L  N+F         + + ++    +G
Sbjct: 405 LIHLSENRL-----ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 240 ANQISGTIPPGI-----RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS 294
            N +       +       L +L  L +  N L+   P     L  L+ LSL +N L   
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519

Query: 295 IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPH----QLLSI 350
             + L     L  L +S N L    P    +   L + + + NK             L+ 
Sbjct: 520 SHNDL--PANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFINWLNH 574

Query: 351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSL 402
           T +T++   ++            +L +L        +    +  +L    ++
Sbjct: 575 TNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTV 626

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.1 bits (234), Expect = 4e-20
 Identities = 73/358 (20%), Positives = 132/358 (36%), Gaps = 22/358 (6%)

Query: 6   YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGN 65
             +L  L ++ NK+     E    L NLQ L + +N L          L  +    +  N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 66  SLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125
            +      T   L  L  L++ +N  +     +I  I S+  I+L  N+      +++  
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTA 403

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG-KVSIDFSSLKNLSWLNLE 184
           NL +L    +        I   L    +L+IL L  N+          S   +L  L L 
Sbjct: 404 NLIHLSENRLENL----DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
           +N L +    +L +  F    S L+V+ L  N      P   ++L++ +    + +N+++
Sbjct: 460 ENMLQLAWETELCWDVF-EGLSHLQVLYLNHNYLNSLPPGVFSHLTA-LRGLSLNSNRLT 517

Query: 245 GTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLT 303
             +        NL  L +  N+L    PD      +L  L + +N        S+  N  
Sbjct: 518 -VLSHND-LPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWL 572

Query: 304 KL--VELPLSYNNLQGNIPSSLGNCQI--LRMFNASRNKLTGALPHQLLSITTLTLSL 357
               V +     ++    P S     +  L        ++  +L   L  + T+TL+L
Sbjct: 573 NHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTL 630

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.0 bits (200), Expect = 6e-16
 Identities = 34/188 (18%), Positives = 65/188 (34%), Gaps = 10/188 (5%)

Query: 285 SLYNNSLQG--SIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGA 342
            +          +P  L    +L+   LS+N ++    SS    + L++           
Sbjct: 7   RIAFYRFCNLTQVPQVLNTTERLL---LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 343 LPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVI--PVTLSACV 400
           +  +          LDL ++ +    P     L +L +L +     S  +          
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 401 SLEYLNISRNFFHGI-IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFM--EFLDLSY 457
           +L  L++S+N    + +  S   L S+K  + SSN +  +    L+ L      F  L+ 
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 458 NHFEGEVP 465
           N     V 
Sbjct: 184 NSLYSRVS 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416
                  L   +P     L    +L +S N    V   +      L+ L +   +    I
Sbjct: 9   AFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 417 -PLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSN 472
              +  +L +++  ++ S+ +  L P+  + L  +  L L +      V K G F N
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  170 bits (434), Expect = 1e-46
 Identities = 98/424 (23%), Positives = 170/424 (40%), Gaps = 42/424 (9%)

Query: 25  EEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDL 84
               +L       +    +T  +     +L  +         +  K    +  L NL  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73

Query: 85  NVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSI 144
           N   N+ + + P  + N++ L  I +  N+ +   PL    NL NL  L +  N      
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITDID 128

Query: 145 PNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTN 204
           P  L N +NL  L+L+SN +    ++  S L +L  L+           N +  +  L N
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFG---------NQVTDLKPLAN 175

Query: 205 CSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEI 264
            ++L+ + + +N+        +A L++ +       NQIS   P  +  L NL  L++  
Sbjct: 176 LTTLERLDISSNKVSD--ISVLAKLTN-LESLIATNNQISDITP--LGILTNLDELSLNG 230

Query: 265 NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLG 324
           N+L      T+  L NL  L L NN +    P  L  LTKL EL L  N +     S L 
Sbjct: 231 NQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLA 284

Query: 325 NCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDIS 384
               L     + N+L    P  + ++  LT  L L  N ++   P+   +L  L +L   
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLT-YLTLYFNNISDISPV--SSLTKLQRLFFY 339

Query: 385 GNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFL 444
            N+ S V    L+   ++ +L+   N    + PL+  +L  I +  ++    +     + 
Sbjct: 340 NNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYK 395

Query: 445 KNLS 448
            N+S
Sbjct: 396 ANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  166 bits (423), Expect = 3e-45
 Identities = 101/486 (20%), Positives = 179/486 (36%), Gaps = 65/486 (13%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
             +  +  ++  + K  +   +      L  + TL  D   +     D V  L+ L    
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
              N L    P  L  L  LVD+ +  N+ + + P  + N+++L  + L  N+ +   PL
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL 130

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
               NL NL  L +  N    S  ++LS  ++L+ L   +           ++L  L  L
Sbjct: 131 K---NLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERL 182

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
           ++  N +          ++ L   ++L+ +    NQ     P  +  L++ + +  +  N
Sbjct: 183 DISSNKV--------SDISVLAKLTNLESLIATNNQISDITP--LGILTN-LDELSLNGN 231

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
           Q+       + +L NL  L +  N++    P  +  L  L +L L  N +    P  L  
Sbjct: 232 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285

Query: 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361
           LT L  L L+ N L+   P  + N + L       N ++   P  + S+T L   L   N
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ-RLFFYN 340

Query: 362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII----- 416
           N ++    L   NL N+  L    NQ S + P  L+    +  L ++   +         
Sbjct: 341 NKVSDVSSL--ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 417 -----------------PLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNH 459
                            P ++S   S  E +++ N  S    E     S    +      
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTT 455

Query: 460 FEGEVP 465
           F G V 
Sbjct: 456 FSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  165 bits (419), Expect = 1e-44
 Identities = 98/429 (22%), Positives = 168/429 (39%), Gaps = 42/429 (9%)

Query: 53  NLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPF 112
            L+      +   ++   +      L  +  L              +  +++L  I    
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 77

Query: 113 NRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDF 172
           N+ +   PL    NL  L  + +  N      P  L+N +NL  L L +NQ+        
Sbjct: 78  NQLTDITPLK---NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPL 130

Query: 173 SSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSST 232
            +L NL+ L L  N +          ++ L+  +SL+ +S             +ANL++ 
Sbjct: 131 KNLTNLNRLELSSNTISD--------ISALSGLTSLQQLSFGNQVTD---LKPLANLTT- 178

Query: 233 MTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ 292
           +    I +N++S      +  L NL +L    N++    P  +G L NL +LSL  N L+
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234

Query: 293 GSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITT 352
                +L +LT L +L L+ N +    P  L     L       N+++   P  L  +T 
Sbjct: 235 D--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288

Query: 353 LTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFF 412
           LT +L+L+ N L    P+   NLKNL  L +  N  S + P  +S+   L+ L    N  
Sbjct: 289 LT-NLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

Query: 413 HGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSN 472
             +  L+  +L +I   +   N +S L P  L NL+ +  L L+   +           +
Sbjct: 344 SDVSSLA--NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS 399

Query: 473 KTKISLQGN 481
                    
Sbjct: 400 IPNTVKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (382), Expect = 1e-39
 Identities = 102/419 (24%), Positives = 179/419 (42%), Gaps = 39/419 (9%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
            L   + L+++ ++ N++       + +L NL  L +  N +T    D + NL+ L    
Sbjct: 85  PLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLE 140

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           +  N++     + L  L +L  L+ G N+ + + P  + N+++LE + +  N+ S    L
Sbjct: 141 LSSNTI--SDISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVL 195

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
                L NL++L    N      P  L   +NL+ L L  NQLK   +   +SL NL+ L
Sbjct: 196 A---KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDL 248

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
           +L  N +          +  L+  + L  + L ANQ     P  +A L++ +T+  +  N
Sbjct: 249 DLANNQI--------SNLAPLSGLTKLTELKLGANQISNISP--LAGLTA-LTNLELNEN 297

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
           Q+    P  I NL NL  LT+  N +    P  +  L  LQ+L  YNN +  S  SSL N
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLAN 351

Query: 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361
           LT +  L   +N +    P  L N   +     +    T A  +   +++      +++ 
Sbjct: 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
            L+    P  + +  +  + DI+ N  S    V+ +       +      F G +   L
Sbjct: 410 ALI---APATISDGGSYTEPDITWNLPSYTNEVSYTF-SQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  126 bits (319), Expect = 3e-31
 Identities = 80/397 (20%), Positives = 147/397 (37%), Gaps = 59/397 (14%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
            L   +NL  L +S N +       +  L +LQ L+   N +T   P  + NL+ L+   
Sbjct: 129 PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLD 183

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           I  N +     + L  L NL  L    N+ S + P  +  +++L+ + L  N+      L
Sbjct: 184 ISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTL 239

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
               +L NL  L +  N      P  LS  + L  L L +NQ+        + L  L+ L
Sbjct: 240 A---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNL 292

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
            L +N L        + ++ ++N  +L  ++LY N      P  +++L+  +       N
Sbjct: 293 ELNENQL--------EDISPISNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFYNN 341

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
           ++S      + NL N+  L+   N++    P  +  L  + QL L + +   +  +   N
Sbjct: 342 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361
           ++    +      L    P+++ +                                D++ 
Sbjct: 398 VSIPNTVKNVTGAL--IAPATISDGGSYT-------------------------EPDITW 430

Query: 362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSA 398
           NL +             V +      FSG +   L A
Sbjct: 431 NLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 466

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (251), Expect = 1e-22
 Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 21/241 (8%)

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
             I+         L   +   +    +  T+     +L  +  L      +       + 
Sbjct: 12  TPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVE 65

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
            L  L ++  S N L    P  L N   L     + N++    P  L ++T LT  L L 
Sbjct: 66  YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT-GLTLF 120

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
           NN +    PL   NL NL +L++S N  S +    LS   SL+ L+             L
Sbjct: 121 NNQITDIDPL--KNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV---TDLKPL 173

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
           ++L +++  ++SSN +S +    L  L+ +E L  + N      P     +N  ++SL G
Sbjct: 174 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI-LTNLDELSLNG 230

Query: 481 N 481
           N
Sbjct: 231 N 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 281 LQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT 340
           L   ++  ++    I  +   L + ++  L   N+   +     +   +    A R  + 
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

Query: 341 GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV 400
                 +  +  LT  ++ SNN L    PL   NL  LV + ++ NQ + + P  L+   
Sbjct: 60  S--IDGVEYLNNLT-QINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLT 112

Query: 401 SLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458
           +L  L +  N    I P  L +L ++    +SSN +S +    L  L+ ++ L     
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  155 bits (394), Expect = 3e-42
 Identities = 82/379 (21%), Positives = 150/379 (39%), Gaps = 36/379 (9%)

Query: 81  LVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNF 140
              L       + +FP    +++      L     +  +  +    L ++  L + G   
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKV 56

Query: 141 FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVT 200
             SI   +   +NLE L+L  NQ+        S+L  L+ L +  N +          ++
Sbjct: 57  -ASIQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--------TDIS 104

Query: 201 FLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIAL 260
            L N ++L+ + L  +         +ANL+  M    +GAN    +    + N+  L  L
Sbjct: 105 ALQNLTNLRELYLNEDNISD--ISPLANLTK-MYSLNLGANHNL-SDLSPLSNMTGLNYL 160

Query: 261 TMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIP 320
           T+  +K+    P  I  L +L  LSL  N ++   P  L +LT L       N +    P
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

Query: 321 SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVK 380
             + N   L       NK+T   P  L +++ LT  L++  N ++    +   +L  L  
Sbjct: 217 --VANMTRLNSLKIGNNKITDLSP--LANLSQLT-WLEIGTNQISDINAV--KDLTKLKM 269

Query: 381 LDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI 440
           L++  NQ S +    L+    L  L ++ N         +  L ++    +S N+++ + 
Sbjct: 270 LNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 441 PEFLKNLSFMEFLDLSYNH 459
           P  L +LS M+  D +   
Sbjct: 328 P--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  152 bits (386), Expect = 4e-41
 Identities = 85/405 (20%), Positives = 161/405 (39%), Gaps = 60/405 (14%)

Query: 33  LQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFS 92
             TLA     +    PD   +L+      +   S+   +      L ++  L V   + +
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 93  GMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNAS 152
            +    I  +++LE++ L  N+ +   PL    NL  L  L IG N    +  ++L N +
Sbjct: 58  SIQG--IEYLTNLEYLNLNGNQITDISPLS---NLVKLTNLYIGTNKI--TDISALQNLT 110

Query: 153 NLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVIS 212
           NL  L L  + +        ++L  +  LNL  N+        L  ++ L+N + L  ++
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHN-------LSDLSPLSNMTGLNYLT 161

Query: 213 LYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIP 272
           +  ++     P  IANL+  +    +  NQI    P  + +L +L   T  +N++    P
Sbjct: 162 VTESKVKDVTP--IANLTD-LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

Query: 273 DTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMF 332
             +  +  L  L + NN +    P  L NL++L  L +  N +     +++ +   L+M 
Sbjct: 217 --VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKML 270

Query: 333 NASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVI 392
           N   N+++                 D+S           + NL  L  L ++ NQ     
Sbjct: 271 NVGSNQIS-----------------DISV----------LNNLSQLNSLFLNNNQLGNED 303

Query: 393 PVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS 437
              +    +L  L +S+N    I P  L+SL  +   + ++  + 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  149 bits (380), Expect = 2e-40
 Identities = 76/357 (21%), Positives = 139/357 (38%), Gaps = 34/357 (9%)

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSI-DFSSLKNLSWLNLE 184
           +L       +   +    +        ++  L +   ++    SI     L NL +LNL 
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA---SIQGIEYLTNLEYLNLN 74

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
            N +          ++ L+N   L  + +  N+       ++ NL++ + +  +  + IS
Sbjct: 75  GNQITD--------ISPLSNLVKLTNLYIGTNKI--TDISALQNLTN-LRELYLNEDNIS 123

Query: 245 GTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
                 + NL  + +L +  N    +    +  +  L  L++  + ++   P  + NLT 
Sbjct: 124 D--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTD 178

Query: 305 LVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLL 364
           L  L L+YN ++   P  L +   L  F A  N++T   P  + ++T L  SL + NN +
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN-SLKIGNNKI 233

Query: 365 NGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK 424
               PL   NL  L  L+I  NQ S +    +     L+ LN+  N    I  L+  +L 
Sbjct: 234 TDLSPL--ANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISVLN--NLS 287

Query: 425 SIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
            +    +++N L     E +  L+ +  L LS NH     P     S          
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS-LSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  147 bits (373), Expect = 2e-39
 Identities = 79/388 (20%), Positives = 147/388 (37%), Gaps = 58/388 (14%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
             +  +  I   + K  +   +      L ++  L +    +   +      L+ L+   
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQGI-EYLTNLEYLN 72

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           + GN +    P  L  L  L +L +G N+ +     ++ N+++L  +YL  +  S   PL
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPL 128

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
               NL  + +L +G N+    +   LSN + L  L +T +++K       ++L +L  L
Sbjct: 129 A---NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSL 182

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
           +L  N +          ++ L + +SL   + Y NQ                        
Sbjct: 183 SLNYNQIED--------ISPLASLTSLHYFTAYVNQI----------------------- 211

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
               T    + N+  L +L +  NK+    P  +  L  L  L +  N +     +++ +
Sbjct: 212 ----TDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKD 263

Query: 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361
           LTKL  L +  N +     S L N   L     + N+L       +  +T LT +L LS 
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT-TLFLSQ 320

Query: 362 NLLNGSLPLQVGNLKNLVKLDISGNQFS 389
           N +    PL   +L  +   D +     
Sbjct: 321 NHITDIRPL--ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.9 bits (224), Expect = 1e-19
 Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 21/217 (9%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
           + LS  + L  L V+++K++      I +L +L +L++++N +       + +L++L  F
Sbjct: 149 SPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYF 204

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
               N +    P  +  +  L  L +G N+ + + P  + N+S L W+ +  N+ S    
Sbjct: 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA 260

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
           +    +L  LK L +G N    S  + L+N S L  L L +NQL  +       L NL+ 
Sbjct: 261 VK---DLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQ 217
           L L QN++          +  L + S +         
Sbjct: 316 LFLSQNHITD--------IRPLASLSKMDSADFANQV 344

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (404), Expect = 5e-42
 Identities = 91/496 (18%), Positives = 175/496 (35%), Gaps = 35/496 (7%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           + +  L +S NK+      ++ +  NLQ L +  + +     D   +L +L+   +  N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSIC-NISSLEWIYLPFNRFSGSLPLDIAV 125
           L     +  G L +L  LN+  N +  +   S+  N+++L+ + +        +      
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
            L +L  L I   +       SL +  ++  L L  ++    + I    L ++ +L L  
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 186 NNLGMGTANDLDFVTFLTNCS--SLKVISLYANQFGGELPHSIANLSSTMTDF------- 236
            NL     + L      +     + +   L    F   L      L  +  +F       
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 237 --RIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS 294
                 ++       G    V +  L +    L   +      L+ ++++++ N+ +   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 295 IPSSLGNLTKLVELPLSYNNLQGNI---PSSLGNCQILRMFNASRNKLTGALPHQLLSIT 351
             S   +L  L  L LS N +        +  G    L+    S+N L  ++      + 
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILL 384

Query: 352 TLT--LSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISR 409
           TL    SLD+S N  +  +P      + +  L++S      V         +LE L++S 
Sbjct: 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ---TLEVLDVSN 440

Query: 410 NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPE-FLKNLSFMEFLDLSYNHFEGEVPKKG 468
           N       L L  L+ +    +S N L  L        L     + +S N    +    G
Sbjct: 441 NNL-DSFSLFLPRLQEL---YISRNKLKTLPDASLFPVL---LVMKISRNQL--KSVPDG 491

Query: 469 VFSNKTKIS---LQGN 481
           +F   T +    L  N
Sbjct: 492 IFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (374), Expect = 4e-38
 Identities = 83/450 (18%), Positives = 157/450 (34%), Gaps = 34/450 (7%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTG-QLPDFVGNLSALKVFYIIGN 65
            +L  L +S N L        G L +L+ L +  N      +     NL+ L+   I   
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 66  SLGGKIP-TTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIA 124
               +I       L +L +L +          +S+ +I  +  + L  +  +  L    A
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFA 192

Query: 125 VNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDF----------SS 174
             L +++ L +   N      + L        +   + +        F            
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTN--CSSLKVISLYANQFGGELPHSIANLSST 232
           L  + + +   N LG    ++ D V+ L      +++ + +       +L    + L   
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK- 311

Query: 233 MTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDT---IGELKNLQQLSLYN 288
           +    +  +++   +P    ++L +L  L +  N +           G   +LQ L L  
Sbjct: 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 289 NSLQ--GSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQ 346
           N L+        L  L  L  L +S N     +P S    + +R  N S   +   +   
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC 428

Query: 347 LLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLN 406
           +     +   LD+SNN L+ S  L    L  L +L IS N+   +   +L     L  + 
Sbjct: 429 IPQTLEV---LDVSNNNLD-SFSL---FLPRLQELYISRNKLKTLPDASLFP--VLLVMK 479

Query: 407 ISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
           ISRN    +       L S+++  + +N  
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (331), Expect = 2e-32
 Identities = 62/376 (16%), Positives = 127/376 (33%), Gaps = 30/376 (7%)

Query: 118 SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKN 177
           S+P  +      +K+L +  N         L   +NL++L L S+++       F SL +
Sbjct: 19  SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 178 LSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFR 237
           L  L+L  N+L     + L    F    SSLK ++L  N +      S+    + +   R
Sbjct: 76  LEHLDLSDNHL-----SSLSSSWF-GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 238 IGANQISGTIPPG-IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
           IG  +    I       L +L  L ++   L      ++  ++++  L+L+ +     + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 297 SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG----------ALPHQ 346
                L+ +  L L   NL     S L   ++         + +            L   
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 347 LLSITTLTLS-------LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSAC 399
           +L ++ +           D + +  +    L       + +L I        +    S  
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 400 VSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI---PEFLKNLSFMEFLDLS 456
             ++ + +  +    +       LKS++  ++S N +                ++ L LS
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 457 YNHFEGEVPKKGVFSN 472
            NH         +   
Sbjct: 370 QNHLRSMQKTGEILLT 385

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (306), Expect = 2e-29
 Identities = 71/419 (16%), Positives = 148/419 (35%), Gaps = 50/419 (11%)

Query: 52  GNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLP 111
           G  +A+K   +  N +       L    NL  L +  +R + +   +  ++ SLE + L 
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82

Query: 112 FNRFSGSLPLDIAVNLPNLKALAIGGNNFFG-SIPNSLSNASNLEILDLTS-NQLKGKVS 169
            N  S SL       L +LK L + GN +    + +   N +NL+ L + +         
Sbjct: 83  DNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 170 IDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANL 229
           IDF+ L +L+ L ++  +L    +  L       +   +  ++L+ ++            
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLK------SIRDIHHLTLHLSES----------- 184

Query: 230 SSTMTDFRIGANQISGTIPPGIRN-LVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYN 288
                            +     + L ++  L +    L       +   +    +    
Sbjct: 185 ---------------AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 289 NSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLL 348
                    S   L KL+   L  + +         +C +  + + + ++    +  +L 
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESD--VVSELG 281

Query: 349 SITTLTLS-LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNI 407
            + T+T+  L +    L   L      L+ + ++ +  ++   V         SLE+L++
Sbjct: 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 408 SRNFFHGII---PLSLSSLKSIKEFNVSSNNLSGL--IPEFLKNLSFMEFLDLSYNHFE 461
           S N              +  S++   +S N+L  +    E L  L  +  LD+S N F 
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 46/268 (17%), Positives = 96/268 (35%), Gaps = 15/268 (5%)

Query: 204 NCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTME 263
           +C +  V    +  F   +P   + L++ M    +  N+I+      +R   NL  L ++
Sbjct: 3   SCDASGVCDGRSRSFT-SIP---SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 264 INKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQG-NIPSS 322
            ++++    D    L +L+ L L +N L     S  G L+ L  L L  N  Q   + S 
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 323 LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD 382
             N   L+       +    +     +  T    L++    L       + +++++  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 383 ISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL--- 439
           +  ++ + ++ +      S+ YL +            L   +        +   S L   
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 440 -------IPEFLKNLSFMEFLDLSYNHF 460
                  +  ++  LS +EF D + N  
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGL 266

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.2 bits (206), Expect = 7e-17
 Identities = 49/349 (14%), Positives = 104/349 (29%), Gaps = 49/349 (14%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
            ++  L +  ++    +      L +++ L +    L       +           +   
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 67  LG-------GKIPTTLGLLRNLVDLNVGENRFSGMF------PRSICNISSLEWIYLPFN 113
                     ++   L  +  L ++   +   +G+          +  +  +E + +   
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 114 RFSG----SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKV- 168
                        +   L  +K + +  +  F    +   +  +LE LDL+ N +  +  
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 169 --SIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFL-TNCSSLKVISLYANQFGGELPHS 225
             S    +  +L  L L QN+L       +     +     +L  + +  N F   +P S
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHL-----RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 226 IANLSSTMTDFRIGANQISGTIPPGI------------------RNLVNLIALTMEINKL 267
                  M    + +  I   +   I                    L  L  L +  NKL
Sbjct: 406 CQWPEK-MRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL 463

Query: 268 HGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ 316
             T+PD       L  + +  N L+         LT L ++ L  N   
Sbjct: 464 K-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 44/291 (15%), Positives = 92/291 (31%), Gaps = 67/291 (23%)

Query: 5   RYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIG 64
               +  L + +  L   +      L  ++ + ++ + +      F  +L +L+   +  
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 65  NSLGGKIPTT---LGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           N +  +        G   +L  L + +N            + S++               
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNH-----------LRSMQKTGEILL-------- 384

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
                L NL +L I  N  F  +P+S      +  L+L+S  ++    +     + L  L
Sbjct: 385 ----TLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR---VVKTCIPQTLEVL 436

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
           ++  NNL         F  FL     L+ + +  N+                        
Sbjct: 437 DVSNNNLD-------SFSLFLPR---LQELYISRNKL----------------------- 463

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ 292
               T+P        L+ + +  N+L          L +LQ++ L+ N   
Sbjct: 464 ---KTLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI 415
             D  +     S+P   G    +  LD+S N+ + +    L AC +L+ L +  +  + I
Sbjct: 9   VCDGRSRSFT-SIP--SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 416 IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTK 475
              +  SL S++  ++S N+LS L   +   LS +++L+L  N ++  +    +F N T 
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTN 124

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  143 bits (363), Expect = 3e-38
 Identities = 57/331 (17%), Positives = 107/331 (32%), Gaps = 25/331 (7%)

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
           +    + L   G+       + LS        D        +     ++  N        
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR----QANSNNPQIETRTG 65

Query: 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245
             L        D +   T       + L +     + P     LS  +    I A  +  
Sbjct: 66  RAL----KATADLLEDATQ-PGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLM- 117

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN---- 301
            +P  ++    L  LT+  N L   +P +I  L  L++LS+        +P  L +    
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 302 -----LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356
                L  L  L L +  ++ ++P+S+ N Q L+      + L+ AL   +  +  L   
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE-E 233

Query: 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416
           LDL       + P   G    L +L +        +P+ +     LE L++        +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 417 PLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447
           P  ++ L +     V  +  + L        
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (355), Expect = 3e-37
 Identities = 54/327 (16%), Positives = 110/327 (33%), Gaps = 33/327 (10%)

Query: 141 FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVT 200
            GS  +   ++S  E L    +          S  +     +  + +             
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----------AW 50

Query: 201 FLTNCSSLKVISLYANQFGGELPHSIANLSST-MTDFRIGANQISGTIPPGIRNLVNLIA 259
              N ++ ++ +             + + +        + +  +    P     L +L  
Sbjct: 51  RQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH 108

Query: 260 LTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNI 319
           +T++   L   +PDT+ +   L+ L+L  N L+ ++P+S+ +L +L EL +        +
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 320 PSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLV 379
           P  L +                    +   +  L  SL L    +  SLP  + NL+NL 
Sbjct: 167 PEPLASTD---------------ASGEHQGLVNLQ-SLRLEWTGIR-SLPASIANLQNLK 209

Query: 380 KLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL 439
            L I  +  S  +   +     LE L++         P        +K   +   +    
Sbjct: 210 SLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 440 IPEFLKNLSFMEFLDLSYNHFEGEVPK 466
           +P  +  L+ +E LDL        +P 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (354), Expect = 5e-37
 Identities = 61/383 (15%), Positives = 122/383 (31%), Gaps = 64/383 (16%)

Query: 45  GQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISS 104
           G       + S  +  Y  G++        L   +   + +               N ++
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 105 LEWIYLPFNRFSGSLPLDIAV-NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ 163
            +           +    +     P   AL +         P+     S+L+ + + +  
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG 115

Query: 164 LKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTF---LTNCSSLKVISLYANQFGG 220
           L  ++         L  L L +N L                + + + L+ +S+ A     
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPL----------RALPASIASLNRLRELSIRACPELT 164

Query: 221 ELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKN 280
           ELP  +A+  +                    + LVNL +L +E   +  ++P +I  L+N
Sbjct: 165 ELPEPLASTDA----------------SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 281 LQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT 340
           L+ L + N+ L  ++  ++ +L KL EL L       N P   G    L+          
Sbjct: 208 LKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK---------- 256

Query: 341 GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV 400
                           L L +     +LPL +  L  L KLD+ G      +P  ++   
Sbjct: 257 ---------------RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 401 SLEYLNISRNFFHGIIPLSLSSL 423
           +   + +  +    +      + 
Sbjct: 302 ANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (250), Expect = 4e-23
 Identities = 36/197 (18%), Positives = 76/197 (38%), Gaps = 13/197 (6%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSA------ 56
           + +++ L  L +++N L   +P  I SL  L+ L+I       +LP+ + +  A      
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 57  ---LKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFN 113
              L+   +    +   +P ++  L+NL  L +  +  S     +I ++  LE + L   
Sbjct: 182 LVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC 239

Query: 114 RFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFS 173
               + P         LK L +   +   ++P  +   + LE LDL       ++    +
Sbjct: 240 TALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 174 SLKNLSWLNLEQNNLGM 190
            L     + +  +    
Sbjct: 299 QLPANCIILVPPHLQAQ 315

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  142 bits (361), Expect = 7e-37
 Identities = 100/439 (22%), Positives = 157/439 (35%), Gaps = 71/439 (16%)

Query: 23  IPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLV 82
           I     S   LQ      + LT ++P    N+ +   +Y   +      P   G  R + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 83  DLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFG 142
              +             C       + L     S SLP       P+L++L    N+   
Sbjct: 62  VSRL-----------RDCLDRQAHELELNNLGLS-SLPELP----PHLESLVASCNS-LT 104

Query: 143 SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFL 202
            +P    +  +L + +     L             L +L +  N         L+ +  L
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQ--------LEKLPEL 149

Query: 203 TNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTM 262
            N S LK+I +  N    +LP    +L         G NQ+     P ++NL  L A+  
Sbjct: 150 QNSSFLKIIDVDNNSL-KKLPDLPPSL----EFIAAGNNQL--EELPELQNLPFLTAIYA 202

Query: 263 EINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSS 322
           + N L   +PD      +L+ +   NN L       L NL  L  +    N L+  +P  
Sbjct: 203 DNNSLK-KLPD---LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDL 255

Query: 323 LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD 382
             + + L   N   N LT  LP    S+T     LD+S N+ +  L        NL  L+
Sbjct: 256 PPSLEAL---NVRDNYLT-DLPELPQSLT----FLDVSENIFS-GLS---ELPPNLYYLN 303

Query: 383 ISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPE 442
            S N+    +        SLE LN+S N     +P     L   +    S N+L+ + PE
Sbjct: 304 ASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEV-PE 354

Query: 443 FLKNLSFMEFLDLSYNHFE 461
             +NL   + L + YN   
Sbjct: 355 LPQNL---KQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  141 bits (358), Expect = 1e-36
 Identities = 94/467 (20%), Positives = 165/467 (35%), Gaps = 80/467 (17%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           + L E     + L  ++P E  ++ +       ++      P   G    + V  +    
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 67  LGG------------KIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNR 114
                           +P       +L  L    N  +   P    ++ SL         
Sbjct: 70  DRQAHELELNNLGLSSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 115 FSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSS 174
            S           P L+ L +  NN    +P  L N+S L+I+D+ +N LK    +    
Sbjct: 126 LSD--------LPPLLEYLGV-SNNQLEKLP-ELQNSSFLKIIDVDNNSLK---KL-PDL 171

Query: 175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMT 234
             +L ++    N         L+ +  L N   L  I    N    +LP    +L     
Sbjct: 172 PPSLEFIAAGNNQ--------LEELPELQNLPFLTAIYADNNSL-KKLPDLPLSL----E 218

Query: 235 DFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS 294
               G N +     P ++NL  L  +  + N L  T+PD      +L+ L++ +N L   
Sbjct: 219 SIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-D 271

Query: 295 IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLT 354
           +P    +LT L      ++ L    P+       L   NAS N++  +L     S+    
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIR-SLCDLPPSLEE-- 321

Query: 355 LSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414
             L++SNN L   LP     L+   +L  S N  +  +P       +L+ L++  N    
Sbjct: 322 --LNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR- 370

Query: 415 IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461
             P    S++ ++      N+    +PE  +NL   + L +  N   
Sbjct: 371 EFPDIPESVEDLR-----MNSHLAEVPELPQNL---KQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  138 bits (349), Expect = 3e-35
 Identities = 89/443 (20%), Positives = 156/443 (35%), Gaps = 74/443 (16%)

Query: 8   NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSL 67
              EL ++   L   +PE      +L++L    N LT +LP+   +L +L V      +L
Sbjct: 72  QAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

Query: 68  GGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNL 127
                    L   L  L V  N+     P  + N S L+ I +  N     LP       
Sbjct: 127 SD-------LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLP----DLP 172

Query: 128 PNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN 187
           P+L+ +A G NN    +P  L N   L  +   +N LK    +      +L  +    N 
Sbjct: 173 PSLEFIAAG-NNQLEELPE-LQNLPFLTAIYADNNSLK---KL-PDLPLSLESIVAGNNI 226

Query: 188 LGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTI 247
           L        + +  L N   L  I    N     LP    +L +      +  N ++  +
Sbjct: 227 L--------EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA----LNVRDNYLT-DL 272

Query: 248 PPGIRNLVNLIALTMEINKLHGTIP-------------DTIGELKNLQQLSLYNNSLQGS 294
           P   ++L  L       + L    P                    +L++L++ NN L   
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-E 331

Query: 295 IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLT 354
           +P+    L +L+    S+N+L   +P    N + L   +   N L    P    S+    
Sbjct: 332 LPALPPRLERLI---ASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVE--- 380

Query: 355 LSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414
             L ++++L    +P    NLK   +L +  N      P       S+E L ++      
Sbjct: 381 -DLRMNSHL--AEVPELPQNLK---QLHVETNPLR-EFPDIPE---SVEDLRMNSERVVD 430

Query: 415 IIPLSLSSLKSIKEFNVSSNNLS 437
               +  +   +++     ++  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (287), Expect = 3e-27
 Identities = 76/383 (19%), Positives = 129/383 (33%), Gaps = 60/383 (15%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
             L  L VS N+LE ++PE + +   L+ + +D N L  +LPD   +L  +       N 
Sbjct: 131 PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGN---NQ 184

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L  +    L  L  L  +    N    +         SLE I    N     LP ++  N
Sbjct: 185 L--EELPELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILE-ELP-ELQ-N 235

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
           LP L  +    N    ++P+   +   LE L++  N L   +     SL  L       +
Sbjct: 236 LPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFS 290

Query: 187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246
            L                  +L  ++  +N+    L     +L     +  +  N++   
Sbjct: 291 GLS-------------ELPPNLYYLNASSNEIR-SLCDLPPSL----EELNVSNNKLI-E 331

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLV 306
           +P     L  LIA     N L   +P+      NL+QL +  N L+   P    ++  L 
Sbjct: 332 LPALPPRLERLIASF---NHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDL- 382

Query: 307 ELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG 366
                 N+    +P    N + L   +   N L    P    S+      L +++  +  
Sbjct: 383 ----RMNSHLAEVPELPQNLKQL---HVETNPLR-EFPDIPESVE----DLRMNSERVVD 430

Query: 367 SLPLQVGNLKNLVKLDISGNQFS 389
                      L       +   
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (265), Expect = 2e-24
 Identities = 57/272 (20%), Positives = 100/272 (36%), Gaps = 42/272 (15%)

Query: 223 PHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEL---- 278
           P +++N    + +    ++ ++  +P    N+ +        ++     P   GE     
Sbjct: 5   PRNVSNT--FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 279 ---------KNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQIL 329
                    +   +L L N  L  S+P    +L  LV    S N+L   +P    + + L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSL 116

Query: 330 RMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS 389
            + N +   L+  LP  L         L +SNN L   LP ++ N   L  +D+  N   
Sbjct: 117 LVDNNNLKALSD-LPPLL-------EYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK 166

Query: 390 GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF 449
             +P       SLE++    N    +    L +L  +      +N+L  L P+   +L  
Sbjct: 167 -KLPDLPP---SLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKL-PDLPLSL-- 217

Query: 450 MEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
            E +    N  E E+P+       T I    N
Sbjct: 218 -ESIVAGNNILE-ELPELQNLPFLTTIYADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.3 bits (235), Expect = 1e-20
 Identities = 48/224 (21%), Positives = 82/224 (36%), Gaps = 34/224 (15%)

Query: 271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGN----- 325
           I         LQ+   ++++L   +P    N+    E   +++  + N P   G      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 326 --------CQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKN 377
                    +       +   L+ +LP     +     SL  S N L   LP    +LK+
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHLE----SLVASCNSLT-ELPELPQSLKS 115

Query: 378 LVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS 437
           L+  + +    S + P        LEYL +S N    +    L +   +K  +V +N+L 
Sbjct: 116 LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLK 166

Query: 438 GLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
            L P+   +L   EF+    N  E E+P+       T I    N
Sbjct: 167 KL-PDLPPSL---EFIAAGNNQLE-ELPELQNLPFLTAIYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.6 bits (215), Expect = 4e-18
 Identities = 63/347 (18%), Positives = 116/347 (33%), Gaps = 75/347 (21%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
            L   S L  + V  N L+ ++P+      +L+ +A   N L  +LP+   NL  L   Y
Sbjct: 148 ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELPEL-QNLPFLTAIY 201

Query: 62  IIGNSLGGKIPTTL-GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
              NSL       L  L  +L  +  G N         + N+  L  IY   N    +LP
Sbjct: 202 ADNNSL-----KKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLP 253

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
                  P+L+AL +  +N+   +P    + + L++ +   + L            NL +
Sbjct: 254 D----LPPSLEALNVR-DNYLTDLPELPQSLTFLDVSENIFSGLS-------ELPPNLYY 301

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
           LN   N +           +      SL+ +++  N+   ELP     L           
Sbjct: 302 LNASSNEI----------RSLCDLPPSLEELNVSNNKLI-ELPALPPRL----ERLIASF 346

Query: 241 NQISGTIPPGIRNLV-------NLIALTMEINKLH--------GTIPDTIGELK------ 279
           N ++  +P   +NL         L         +           +P+    LK      
Sbjct: 347 NHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405

Query: 280 -----------NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNL 315
                      +++ L + +  +      +     KL +    +++ 
Sbjct: 406 NPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  143 bits (362), Expect = 8e-37
 Identities = 59/441 (13%), Positives = 141/441 (31%), Gaps = 24/441 (5%)

Query: 23  IPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLV 82
           I E   +    +   +  + L   L     +   +K   + GN L       L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 83  DLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFG 142
            LN+  N         + ++S+L  + L  N     L        P+++ L    NN   
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNI-S 112

Query: 143 SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFL 202
            +    S     + + L +N++     +D      + +L+L+ N +     + ++F    
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-----DTVNFAELA 165

Query: 203 TNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTM 262
            +  +L+ ++L  N    ++   +   +  +    + +N+++  + P  ++   +  +++
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 263 EINKLHGTIPDTIGELKNLQQLSLYNNSLQ-GSIPSSLGNLTKLVELPLSYN-NLQGNIP 320
             NKL   I   +   +NL+   L  N    G++        ++  +       L G   
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 321 SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVK 380
                  +          L      +L+++     +L          L  +  N     +
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 381 LDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI 440
           +D    Q+  VI        +   L   +      +     +   +    +        +
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG-TLQQAVGQIEL 399

Query: 441 PEFLKNLSFMEFLDLSYNHFE 461
               +  S ++ L      +E
Sbjct: 400 QHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (317), Expect = 5e-31
 Identities = 59/359 (16%), Positives = 119/359 (33%), Gaps = 24/359 (6%)

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
           +I  N    K   +  ++   ++ +   +A N++ LDL+ N L    + D +    L  L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
           NL  N L             L + S+L+ + L  N         +    S +       N
Sbjct: 64  NLSSNVLYE--------TLDLESLSTLRTLDLNNNYV-----QELLVGPS-IETLHAANN 109

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQG-SIPSSLG 300
            IS  +            + +  NK+        G    +Q L L  N +   +      
Sbjct: 110 NIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           +   L  L L YN +  ++   +     L+  + S NKL   +  +  S   +T  + L 
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVT-WISLR 222

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
           NN L   +   +   +NL   D+ GN F         +  +     +++     +   + 
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNE 280

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQ 479
                    +  +     L   F   L  ++  + +    +G   ++     + +   +
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (268), Expect = 9e-25
 Identities = 58/392 (14%), Positives = 128/392 (32%), Gaps = 30/392 (7%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
           L+ ++ L  L +S N L      ++ SL  L+TL ++ NY+       +    +++  + 
Sbjct: 54  LAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHA 106

Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD 122
             N++  ++       +   ++ +  N+ + +        S ++++ L  N        +
Sbjct: 107 ANNNI-SRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN 182
           +A +   L+ L +  N  +  +   +   + L+ LDL+SN+L   +  +F S   ++W++
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF-GGELPHSIANLSSTMTDFRIGAN 241
           L  N L +           L    +L+   L  N F  G L    +      T   +   
Sbjct: 221 LRNNKLVLIEKA-------LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT---VAKQ 270

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS----IPS 297
            +                                  L  L++      S QGS    +  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 298 SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSL 357
              N  +  E+       +  I       Q        +  L   + +   +   L  +L
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 358 DLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS 389
             +   +      +      L  L     ++ 
Sbjct: 391 QQAVGQIELQHATE--EQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (262), Expect = 5e-24
 Identities = 54/391 (13%), Positives = 113/391 (28%), Gaps = 27/391 (6%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           +L   S L  L ++ N +     +E+    +++TL    N ++ ++          K  Y
Sbjct: 75  DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIY 126

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGM-FPRSICNISSLEWIYLPFNRFSGSLP 120
           +  N +        G    +  L++  N    + F     +  +LE + L +N     + 
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
             +      LK L +  N     +     +A+ +  + L +N+L   +       +NL  
Sbjct: 186 GQV--VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
            +L  N    GT  D           + +V ++       +L        +  T    GA
Sbjct: 242 FDLRGNGFHCGTLRDF-------FSKNQRVQTVAKQTV-KKLTGQNEEECTVPTLGHYGA 293

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHG----TIPDTIGELKNLQQLSLYNNSLQGSIP 296
                   P    L+ L      +    G     +          +++       +  I 
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353

Query: 297 SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356
                    + L      L   + +       L             L H     + L L 
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLL 412

Query: 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ 387
             +        +  Q      +   D+  ++
Sbjct: 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (254), Expect = 6e-23
 Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 13/212 (6%)

Query: 271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR 330
           I +        +   + ++SL+ ++ S   +   + EL LS N L     + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG 390
           + N S N L   L   L S++TL  +LDL+NN +      ++    ++  L  + N  S 
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLR-TLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL-IPEFLKNLSF 449
           V           + + ++ N    +  L       ++  ++  N +  +   E   +   
Sbjct: 114 VSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 450 MEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
           +E L+L YN    +V  + VF+    + L  N
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSN 201

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 48/377 (12%), Positives = 110/377 (29%), Gaps = 15/377 (3%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTG-QLPDFVGNLSALKVFYIIGN 65
                + ++ NK+      + G    +Q L +  N +      +   +   L+   +  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 66  SLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125
            +   +   + +   L  L++  N+ +        + + + WI L  N+    +   +  
Sbjct: 180 FI-YDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR- 234

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
              NL+   + GN F          + N  +  +    +K     +       +  +   
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

Query: 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245
                  A   D +  L       ++S   ++    L     N +    +      Q   
Sbjct: 294 YCCEDLPAPFADRLIALKR-KEHALLSGQGSET-ERLECERENQAR-QREIDALKEQYR- 349

Query: 246 TIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
           T+   +       I L  +   L   + +       L             +  +    + 
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSP 408

Query: 305 LVELPLSYN-NLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNL 363
           L  L        +  +         +R ++  ++K T  L  +   +  L    DL+   
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLKKLNGEADLALAS 467

Query: 364 LNGSLPLQVGNLKNLVK 380
            N +L   V   +NL  
Sbjct: 468 ANATLQELVVREQNLAS 484

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 367 SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI 426
           ++     N        ++ +     +     +  +++ L++S N    I    L+    +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461
           +  N+SSN L   +   L++LS +  LDL+ N+ +
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (345), Expect = 1e-34
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 16/326 (4%)

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLD 197
              F ++P  +   +   +LDL  N++K     +F+S  +L  L L +N +       ++
Sbjct: 20  RKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-----AVE 72

Query: 198 FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVN 256
              F  N  +L+ + L +N+           LS+ +T   I  N+I   +   + ++L N
Sbjct: 73  PGAF-NNLFNLRTLGLRSNRLKLIPLGVFTGLSN-LTKLDISENKIV-ILLDYMFQDLYN 129

Query: 257 LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS-SLGNLTKLVELPLSYNNL 315
           L +L +  N L          L +L+QL+L   +L  SIP+ +L +L  L+ L L + N+
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188

Query: 316 QGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GN 374
                 S      L++   S       +    L    LT SL +++  L  ++P     +
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT-SLSITHCNLT-AVPYLAVRH 246

Query: 375 LKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN 434
           L  L  L++S N  S +    L   + L+ + +       + P +   L  ++  NVS N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 435 NLSGLIPEFLKNLSFMEFLDLSYNHF 460
            L+ L      ++  +E L L  N  
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (328), Expect = 2e-32
 Identities = 67/322 (20%), Positives = 125/322 (38%), Gaps = 15/322 (4%)

Query: 118 SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKN 177
           ++P  I       + L +G N       +  ++  +LE L+L  N +       F++L N
Sbjct: 25  AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 178 LSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFR 237
           L  L L  N L       +    F T  S+L  + +  N+    L +   +L + +    
Sbjct: 82  LRTLGLRSNRL-----KLIPLGVF-TGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLE 134

Query: 238 IGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
           +G N +   I       L +L  LT+E   L     + +  L  L  L L + ++     
Sbjct: 135 VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 297 SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356
            S   L +L  L +S+      +  +      L   + +   LT A+P+  +        
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRF 252

Query: 357 LDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI 415
           L+LS N ++ ++   +   L  L ++ + G Q + V P        L  LN+S N    +
Sbjct: 253 LNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 416 IPLSLSSLKSIKEFNVSSNNLS 437
                 S+ +++   + SN L+
Sbjct: 312 EESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (290), Expect = 1e-27
 Identities = 70/318 (22%), Positives = 124/318 (38%), Gaps = 17/318 (5%)

Query: 76  GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAI 135
           G+      L++G+NR   +      +   LE + L  N  S ++      NL NL+ L +
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87

Query: 136 GGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTAN 194
             N     IP    +  SNL  LD++ N++   +   F  L NL  L +  N+L      
Sbjct: 88  RSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY---- 142

Query: 195 DLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RN 253
            +    F +  +SL+ ++L           ++++L   +   R+    I+  I     + 
Sbjct: 143 -ISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNIN-AIRDYSFKR 198

Query: 254 LVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS-SLGNLTKLVELPLSY 312
           L  L  L +       T+        NL  LS+ + +L  ++P  ++ +L  L  L LSY
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257

Query: 313 NNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV 372
           N +     S L     L+       +L   +             L++S N L  +L   V
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESV 315

Query: 373 -GNLKNLVKLDISGNQFS 389
             ++ NL  L +  N  +
Sbjct: 316 FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  114 bits (287), Expect = 4e-27
 Identities = 61/312 (19%), Positives = 113/312 (36%), Gaps = 12/312 (3%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           +    L + KN+++    +E  S  +L+ L ++ N ++   P    NL  L+   +  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L          L NL  L++ EN+   +      ++ +L+ + +  N     +       
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSG 150

Query: 127 LPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
           L +L+ L +   N   SIP  +LS+   L +L L    +       F  L  L  L +  
Sbjct: 151 LNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245
                    +           +L  +S+           ++ +L   +    +  N IS 
Sbjct: 210 WPYLDTMTPN------CLYGLNLTSLSITHCNLTAVPYLAVRHLVY-LRFLNLSYNPIS- 261

Query: 246 TIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
           TI   +   L+ L  + +   +L    P     L  L+ L++  N L     S   ++  
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 305 LVELPLSYNNLQ 316
           L  L L  N L 
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 3/196 (1%)

Query: 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQIL 329
            +P+ I      + L L  N ++        +   L EL L+ N +    P +  N   L
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 330 RMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS 389
           R      N+L   +P  + +  +    LD+S N +   L     +L NL  L++  N   
Sbjct: 83  RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 390 GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF 449
            +     S   SLE L + +     I   +LS L  +    +   N++ +     K L  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 450 MEFLDLSYNHFEGEVP 465
           ++ L++S+  +   + 
Sbjct: 202 LKVLEISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.1 bits (229), Expect = 7e-20
 Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 13/231 (5%)

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKL 305
            +P GI        L +  N++     D      +L++L L  N +    P +  NL  L
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 306 VELPLSYNNLQ---GNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNN 362
             L L  N L+     + + L N   L +   S NK+   L +    +  L  SL++ +N
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDI---SENKIVILLDYMFQDLYNLK-SLEVGDN 138

Query: 363 LLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421
            L   +  +    L +L +L +     + +    LS    L  L +     + I   S  
Sbjct: 139 DLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

Query: 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSN 472
            L  +K   +S       +         +  L +++ +    VP      +
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP-YLAVRH 246

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (335), Expect = 6e-34
 Identities = 65/367 (17%), Positives = 126/367 (34%), Gaps = 27/367 (7%)

Query: 23  IPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLV 82
           I   +        + ID              L+  K+     +++       L   R + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 83  DLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFG 142
            LN+ + +   +   +     +++ +Y+ FN     LP  +  N+P L  L +  N+   
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 143 SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFL 202
                  N   L  L +++N L+      F +  +L  L L  N L       +D     
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-----THVDLSLI- 185

Query: 203 TNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTM 262
               SL   ++  N        ++A   + + +     N I+  +   +   V L  L +
Sbjct: 186 ---PSLFHANVSYNLL-----STLAIPIA-VEELDASHNSIN-VVRGPV--NVELTILKL 233

Query: 263 EINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSS 322
           + N L  T    +     L ++ L  N L+  +      + +L  L +S N L   +   
Sbjct: 234 QHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 290

Query: 323 LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD 382
                 L++ + S N L   +         L  +L L +N +     L++     L  L 
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-NLYLDHNSIV---TLKLSTHHTLKNLT 345

Query: 383 ISGNQFS 389
           +S N + 
Sbjct: 346 LSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (321), Expect = 4e-32
 Identities = 69/367 (18%), Positives = 141/367 (38%), Gaps = 27/367 (7%)

Query: 71  IPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNL 130
           I + L       D+++        F      +++ + +    +     LP  +  +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 131 KALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM 190
           + L +           + + A  ++ L +  N ++      F ++  L+ L LE+N+L  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-- 129

Query: 191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG 250
              + L    F  N   L  +S+  N        +    +S + + ++ +N+++  +   
Sbjct: 130 ---SSLPRGIF-HNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLT-HVDLS 183

Query: 251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPL 310
              + +L    +  N L      T+     +++L   +NS+   +   +    +L  L L
Sbjct: 184 --LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKL 233

Query: 311 SYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPL 370
            +NNL     + L N   L   + S N+L   + H  + +  L   L +SNN L  +L L
Sbjct: 234 QHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE-RLYISNNRLV-ALNL 289

Query: 371 QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFN 430
               +  L  LD+S N     +         LE L +  N    I+ L LS+  ++K   
Sbjct: 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS---IVTLKLSTHHTLKNLT 345

Query: 431 VSSNNLS 437
           +S N+  
Sbjct: 346 LSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (310), Expect = 1e-30
 Identities = 70/355 (19%), Positives = 135/355 (38%), Gaps = 41/355 (11%)

Query: 150 NASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLK 209
             +N +I+   ++ ++   +    S + +  LNL    +      ++D   F     +++
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-----EEIDTYAF-AYAHTIQ 96

Query: 210 VISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLH 268
            + +  N      PH   N+   +T   +  N +S ++P GI  N   L  L+M  N L 
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 154

Query: 269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQI 328
               DT     +LQ L L +N L   +   L  +  L    +SYN L     S+L     
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIA 206

Query: 329 LRMFNASRNKLTGALPHQLLSITTLTLS------------------LDLSNNLLNGSLPL 370
           +   +AS N +        + +T L L                   +DLS N L   +  
Sbjct: 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 371 QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFN 430
               ++ L +L IS N+    + +      +L+ L++S N     +  +      ++   
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 431 VSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLC 485
           +  N++  L       L   + L LS+N ++     + +F N  + ++    + C
Sbjct: 325 LDHNSIVTLKLSTHHTL---KNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (298), Expect = 5e-29
 Identities = 67/361 (18%), Positives = 127/361 (35%), Gaps = 35/361 (9%)

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLD 197
              +  I ++L        + +           +  +L N   +  + + +    A    
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA--- 63

Query: 198 FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVN 256
               L +   +++++L   Q      ++ A   + +    +G N I   +PP + +N+  
Sbjct: 64  ---LLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIR-YLPPHVFQNVPL 118

Query: 257 LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYN--- 313
           L  L +E N L             L  LS+ NN+L+     +    T L  L LS N   
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 314 -------------NLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
                        N+  N+ S+L     +   +AS N +        + +T     L L 
Sbjct: 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI----LKLQ 234

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
           +N L       + N   LV++D+S N+   ++         LE L IS N     + L  
Sbjct: 235 HNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQG 480
             + ++K  ++S N+L   +         +E L L +N     +           ++L  
Sbjct: 292 QPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSH 348

Query: 481 N 481
           N
Sbjct: 349 N 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 4e-28
 Identities = 61/317 (19%), Positives = 115/317 (36%), Gaps = 28/317 (8%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           L  +  +  L ++  ++E +I          +Q L + FN +    P    N+  L V  
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           +  N L             L  L++  N    +   +    +SL+ + L  NR +  + L
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL 182

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
                +P+L    +  N       ++L+    +E LD + N +     +       L+ L
Sbjct: 183 S---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN---VVRGPVNVELTIL 231

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
            L+ NN        L    +L N   L  + L  N+    + H    +   +    I  N
Sbjct: 232 KLQHNN--------LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNN 282

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
           ++   +    + +  L  L +  N L   +     +   L+ L L +NS+  ++   L  
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LST 337

Query: 302 LTKLVELPLSYNNLQGN 318
              L  L LS+N+   N
Sbjct: 338 HHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 35/187 (18%), Positives = 61/187 (32%), Gaps = 35/187 (18%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
            L+    + EL  S N +   +       + L  L +  N LT      +          
Sbjct: 200 TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAWLLN--------- 246

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
                              LV++++  N    +       +  LE +Y+  NR   +L L
Sbjct: 247 ----------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
                +P LK L +  N+    +  +      LE L L  N +    ++  S+   L  L
Sbjct: 290 YGQ-PIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNL 344

Query: 182 NLEQNNL 188
            L  N+ 
Sbjct: 345 TLSHNDW 351

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  130 bits (329), Expect = 5e-32
 Identities = 76/341 (22%), Positives = 122/341 (35%), Gaps = 53/341 (15%)

Query: 77  LLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIG 136
           L      LNVGE+  +   P  +     +  + +P N  + SLP       P L+ L + 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLP----ALPPELRTLEVS 89

Query: 137 GNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDL 196
           GN    S+P        L I       L        +    L  L +  N L        
Sbjct: 90  GNQL-TSLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT------- 134

Query: 197 DFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVN 256
              +       L+ +S+  NQ    LP   + L           NQ++ ++P     L  
Sbjct: 135 ---SLPVLPPGLQELSVSDNQLA-SLPALPSEL----CKLWAYNNQLT-SLPMLPSGLQE 185

Query: 257 LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ 316
           L   ++  N+L  ++P        L +L  YNN L  S+P+    L +L+   +S N L 
Sbjct: 186 L---SVSDNQLA-SLPTLPS---ELYKLWAYNNRLT-SLPALPSGLKELI---VSGNRLT 234

Query: 317 GNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLK 376
            ++P        L+    S N+LT +LP      + L  SL +  N L   LP  + +L 
Sbjct: 235 -SLPVLPSE---LKELMVSGNRLT-SLPM---LPSGLL-SLSVYRNQLT-RLPESLIHLS 284

Query: 377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP 417
           +   +++ GN  S      L    S    +     F     
Sbjct: 285 SETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (306), Expect = 4e-29
 Identities = 79/382 (20%), Positives = 137/382 (35%), Gaps = 60/382 (15%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           +    L V ++ L   +P+ + +  ++ TL I  N LT  LP        L+   + GN 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQ 92

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L   +P     L  L   +        +        S L  +++  N+ + SLP    V 
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLP----VL 139

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
            P L+ L++  +N   S+P   S    L  L   +NQL    S+       L  L++  N
Sbjct: 140 PPGLQELSVS-DNQLASLPALPSE---LCKLWAYNNQLT---SLP-MLPSGLQELSVSDN 191

Query: 187 NLGMGTANDLDFVTFLTNC-SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245
            L             L    S L  +  Y N+    LP   + L     +  +  N+++ 
Sbjct: 192 QL-----------ASLPTLPSELYKLWAYNNRLT-SLPALPSGL----KELIVSGNRLT- 234

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKL 305
           ++P     L  L+      N+L  ++P        L  LS+Y N L   +P SL +L+  
Sbjct: 235 SLPVLPSELKELMVSG---NRL-TSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 306 VELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN 365
             + L  N L      +L   + +         +         S    T +L L+     
Sbjct: 287 TTVNLEGNPLS---ERTLQALREITSAPGYSGPII-RFDMAGASAPRETRALHLAAADW- 341

Query: 366 GSLPLQVGNLKNLVKLDISGNQ 387
             +P + G      +  + G +
Sbjct: 342 -LVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (306), Expect = 4e-29
 Identities = 70/356 (19%), Positives = 125/356 (35%), Gaps = 51/356 (14%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           +++  L +  N L   +P        L+TL +  N LT  LP     L  L +F      
Sbjct: 61  AHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L         L   L  L +  N+ +   P        L+ + +  N+ + SLP   +  
Sbjct: 116 LPA-------LPSGLCKLWIFGNQLTS-LPVLPPG---LQELSVSDNQLA-SLPALPS-E 162

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
           L  L A     NN   S+P   S    L+ L ++ NQL    S+  +    L  L    N
Sbjct: 163 LCKLWAY----NNQLTSLPMLPSG---LQELSVSDNQLA---SLP-TLPSELYKLWAYNN 211

Query: 187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246
            L           +     S LK + +  N+    LP   + L     +  +  N+++ +
Sbjct: 212 RL----------TSLPALPSGLKELIVSGNRLT-SLPVLPSEL----KELMVSGNRLT-S 255

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLV 306
           +P     L++L   ++  N+L   +P+++  L +   ++L  N L      +L  +T   
Sbjct: 256 LPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP 311

Query: 307 ELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNN 362
                         S+    + L    A+ + L  A   +        +     N 
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (302), Expect = 1e-28
 Identities = 75/310 (24%), Positives = 123/310 (39%), Gaps = 52/310 (16%)

Query: 152 SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVI 211
           +   +L++  + L    ++      +++ L +  NNL           +       L+ +
Sbjct: 40  NGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNL----------TSLPALPPELRTL 86

Query: 212 SLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTI 271
            +  NQ    LP     L   ++ F      +             L  L +  N+L  ++
Sbjct: 87  EVSGNQLT-SLPVLPPGLLE-LSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SL 136

Query: 272 PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRM 331
           P        LQ+LS+ +N L  S+P+    L KL       N L  ++P      Q L  
Sbjct: 137 PVLPP---GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLT-SLPMLPSGLQEL-- 186

Query: 332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391
            + S N+L  +LP      + L   L   NN L  SLP     LK   +L +SGN+ +  
Sbjct: 187 -SVSDNQLA-SLPT---LPSELY-KLWAYNNRLT-SLPALPSGLK---ELIVSGNRLTS- 235

Query: 392 IPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFME 451
           +PV  S    L+ L +S N     +P+  S L S+   +V  N L+ L PE L +LS   
Sbjct: 236 LPVLPS---ELKELMVSGNRL-TSLPMLPSGLLSL---SVYRNQLTRL-PESLIHLSSET 287

Query: 452 FLDLSYNHFE 461
            ++L  N   
Sbjct: 288 TVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 8/105 (7%)

Query: 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416
            + S         ++         L++  +  +  +P  L A   +  L I  N     +
Sbjct: 21  AEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SL 76

Query: 417 PLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461
           P     L+++    VS N L+ L P     L  +        H  
Sbjct: 77  PALPPELRTL---EVSGNQLTSL-PVLPPGLLELSIFSNPLTHLP 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (311), Expect = 3e-31
 Identities = 60/341 (17%), Positives = 113/341 (33%), Gaps = 29/341 (8%)

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
           +I  N    K   +  ++   ++ +   +A N++ LDL+ N L    + D +    L  L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
           NL  N L             L + S+L+ + L  N         +    S +       N
Sbjct: 64  NLSSNVLYE--------TLDLESLSTLRTLDLNNNYV-----QELLVGPS-IETLHAANN 109

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQG-SIPSSLG 300
            IS  +            + +  NK+        G    +Q L L  N +   +      
Sbjct: 110 NIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           +   L  L L YN +  ++   +     L+  + S NKL   +  +  S   +T  + L 
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVT-WISLR 222

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL 420
           NN L   +   +   +NL   D+ GN F         +  +     +++     +   + 
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNE 280

Query: 421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461
                    +  +     L   F   L     + L ++H  
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRL-----IALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (309), Expect = 5e-31
 Identities = 52/310 (16%), Positives = 103/310 (33%), Gaps = 24/310 (7%)

Query: 47  LPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLE 106
           + +   N +  K+  +  +SL   + +      N+ +L++  N  S +    +   + LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 107 WIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG 166
            + L  N    +L L+   +L  L+ L +  N         L    ++E L   +N +  
Sbjct: 62  LLNLSSNVLYETLDLE---SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 167 KVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGG-ELPHS 225
              +  S  +    + L  N +       L  +      S ++ + L  N+         
Sbjct: 113 --RVSCSRGQGKKNIYLANNKI-----TMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 226 IANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
            A+  + +    +  N I   +   +     L  L +  NKL   +         +  +S
Sbjct: 165 AASSDT-LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 286 LYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ-GNIPSSLGNCQILRMFNASRNKLTGALP 344
           L NN L   I  +L     L    L  N    G +       Q ++       K      
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 345 HQLLSITTLT 354
            +  ++ TL 
Sbjct: 280 EEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  110 bits (276), Expect = 1e-26
 Identities = 49/319 (15%), Positives = 105/319 (32%), Gaps = 25/319 (7%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           +     +V+ + L+  +     S  N++ L +  N L+      +   + L++  +  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L       L  L  L  L++  N         +    S+E ++   N  S  +       
Sbjct: 70  L--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR--- 118

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG-KVSIDFSSLKNLSWLNLEQ 185
               K + +  N             S ++ LDL  N++     +   +S   L  LNL+ 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245
           N +      D+           LK + L +N+    +     + +  +T   +  N++  
Sbjct: 179 NFI-----YDVKGQVVFAK---LKTLDLSSNKL-AFMGPEFQSAAG-VTWISLRNNKLV- 227

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKL 305
            I   +R   NL    +  N  H          KN +  ++   +++  +         +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTV 285

Query: 306 VELPLSYNNLQGNIPSSLG 324
             L         ++P+   
Sbjct: 286 PTLGHYGAYCCEDLPAPFA 304

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 9e-25
 Identities = 53/294 (18%), Positives = 100/294 (34%), Gaps = 18/294 (6%)

Query: 204 NCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTME 263
           N +  K+  +  +     L     +  + + +  +  N +S      +     L  L + 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 264 INKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSL 323
            N L+    D +  L  L+ L L NN +       L     +  L  + NN+   +  S 
Sbjct: 67  SNVLY-ETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR 118

Query: 324 GNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG-SLPLQVGNLKNLVKLD 382
           G  Q  +    + NK+T          + +   LDL  N ++  +      +   L  L+
Sbjct: 119 G--QGKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 383 ISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPE 442
           +  N    V          L+ L++S N     +     S   +   ++ +N L   I +
Sbjct: 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEK 231

Query: 443 FLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN-VKLCGGIDELHLPS 495
            L+    +E  DL  N F     +     N+   ++    VK   G +E     
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 1e-24
 Identities = 41/214 (19%), Positives = 83/214 (38%), Gaps = 17/214 (7%)

Query: 271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR 330
           I +        +   + ++SL+ ++ S   +   + EL LS N L     + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 331 MFNASRNKLTGALPHQLLSITTLT--LSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF 388
           + N S N L      + L + +L+   +LDL+NN +      ++    ++  L  + N  
Sbjct: 62  LLNLSSNVLY-----ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

Query: 389 SGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL-IPEFLKNL 447
           S V           + + ++ N    +  L       ++  ++  N +  +   E   + 
Sbjct: 112 SRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 448 SFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
             +E L+L YN    +V  + VF+    + L  N
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 14/196 (7%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           +L   S L  L ++ N +     +E+    +++TL    N ++ ++          K  Y
Sbjct: 75  DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIY 126

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGM-FPRSICNISSLEWIYLPFNRFSGSLP 120
           +  N +        G    +  L++  N    + F     +  +LE + L +N     + 
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
             +      LK L +  N     +     +A+ +  + L +N+L   +       +NL  
Sbjct: 186 GQV--VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 181 LNLEQNNLGMGTANDL 196
            +L  N    GT  D 
Sbjct: 242 FDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 367 SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI 426
           ++     N        ++ +     +     +  +++ L++S N    I    L+    +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461
           +  N+SSN L   +   L++LS +  LDL+ N+ +
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  127 bits (320), Expect = 6e-31
 Identities = 66/389 (16%), Positives = 130/389 (33%), Gaps = 51/389 (13%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
           +NL       ++ +     +     E  +L N + +    + +       + +   +++ 
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
            +    +             +  L +G N    + P    N+  L  + L  N  S SLP
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
             I  N P L  L++  NN      ++    ++L+ L L+SN+L     +D S + +L  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIPSLFH 196

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
            N+  N L           + L    +++ +    N                        
Sbjct: 197 ANVSYNLL-----------STLAIPIAVEELDASHNSI---------------------- 223

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
                 +   +   V L  L ++ N L  T    +     L ++ L  N L+  +     
Sbjct: 224 ----NVVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
            + +L  L +S N L   +         L++ + S N L   +         L  +L L 
Sbjct: 276 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-NLYLD 332

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFS 389
           +N +     L++     L  L +S N + 
Sbjct: 333 HNSIV---TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (291), Expect = 2e-27
 Identities = 78/461 (16%), Positives = 153/461 (33%), Gaps = 49/461 (10%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           L  +  +  L ++  ++E +I          +Q L + FN +    P    N+  L V  
Sbjct: 71  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           +  N L             L  L++  N    +   +    +SL+ + L  NR +  + L
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL 188

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
                +P+L    +  N       ++L+    +E LD + N +     +       L+ L
Sbjct: 189 S---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN---VVRGPVNVELTIL 237

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
            L+ NNL            +L N   L  + L  N+    + H    +   +    I  N
Sbjct: 238 KLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNN 288

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
           ++   +    + +  L  L +  N L   +     +   L+ L L +NS+  ++   L  
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LST 343

Query: 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN 361
              L  L LS+N+          N       N +R  +  A  H         +   L +
Sbjct: 344 HHTLKNLTLSHNDWD-------CNSLRALFRNVARPAVDDADQH-------CKIDYQLEH 389

Query: 362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421
            L             + +   I+       +      C + + +N  ++  H I      
Sbjct: 390 GLCCKESD---KPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGV 446

Query: 422 SLKSIK----EFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458
            L+  +    E N     +  L  E ++    ++ L    +
Sbjct: 447 PLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (285), Expect = 1e-26
 Identities = 66/358 (18%), Positives = 126/358 (35%), Gaps = 35/358 (9%)

Query: 141 FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVT 200
           +  I ++L        + +           +  +L N   +  + + +       L    
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-----RKLPAAL 70

Query: 201 FLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIA 259
              +   +++++L   Q      ++ A   + +    +G N I   +PP + +N+  L  
Sbjct: 71  L-DSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIR-YLPPHVFQNVPLLTV 127

Query: 260 LTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYN------ 313
           L +E N L             L  LS+ NN+L+     +    T L  L LS N      
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187

Query: 314 ----------NLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNL 363
                     N+  N+ S+L     +   +AS N +        + +T     L L +N 
Sbjct: 188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI----LKLQHNN 243

Query: 364 LNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSL 423
           L       + N   LV++D+S N+   ++         LE L IS N     + L    +
Sbjct: 244 LT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

Query: 424 KSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
            ++K  ++S N+L   +         +E L L +N     +           ++L  N
Sbjct: 301 PTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHN 355

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  124 bits (312), Expect = 2e-30
 Identities = 75/410 (18%), Positives = 144/410 (35%), Gaps = 43/410 (10%)

Query: 80  NLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNN 139
           ++  +++  N  + +   S   +  L+++ +        +  +    L +L  L +  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 140 FFGSIPNS-LSNASNLEILDLTSNQLKGKVSID--FSSLKNLSWLNLEQNNLGMGTANDL 196
           F   +     +  +NLE+L LT   L G V     F  L +L  L L  NN+       +
Sbjct: 91  F-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-----KKI 144

Query: 197 DFVTFLTNCSSLKVISLYANQFGGELPHSIANLSST-MTDFRIGANQISGTIPPGIRNLV 255
              +F  N     V+ L  N+        + N      T  R+ +  +            
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL------------ 192

Query: 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNL 315
                 M    L         +  ++  L L  N  + S+     +     ++     + 
Sbjct: 193 ----QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 316 QGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GN 374
             N+ SS G+       N +   L            +   + DLS + +  +L   V  +
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEA----------SGVKTCDLSKSKIF-ALLKSVFSH 297

Query: 375 LKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN 434
             +L +L ++ N+ + +          L  LN+S+NF   I      +L  ++  ++S N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357

Query: 435 NLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTK---ISLQGN 481
           ++  L  +    L  ++ L L  N  +  VP  G+F   T    I L  N
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLK-SVP-DGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (258), Expect = 2e-23
 Identities = 67/360 (18%), Positives = 124/360 (34%), Gaps = 34/360 (9%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFV-GNLSALKVF 60
            SR  +L  L+V +      I       L +L  L +D+N    QL       L+ L+V 
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVL 108

Query: 61  YIIGNSLGGKI--PTTLGLLRNLVDLNVGENRFSGMFPRSI-CNISSLEWIYLPFNRFSG 117
            +   +L G +        L +L  L + +N    + P S   N+     + L FN+   
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK- 167

Query: 118 SLPLDI----------AVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK 167
           S+  +            + L ++    +           +    +++  LDL+ N  K  
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

Query: 168 VSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTF--LTNC-------SSLKVISLYANQF 218
           ++  F      + +     +      +      F    N        S +K   L  ++ 
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287

Query: 219 GGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGE 277
              L  S+ +  + +    +  N+I+  I       L +L+ L +  N L          
Sbjct: 288 -FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345

Query: 278 LKNLQQLSLYNNSLQGSIPS-SLGNLTKLVELPLSYNNLQ---GNIPSSLGNCQILRMFN 333
           L  L+ L L  N ++ ++   S   L  L EL L  N L+     I   L + Q + +  
Sbjct: 346 LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 56/292 (19%), Positives = 94/292 (32%), Gaps = 39/292 (13%)

Query: 224 HSIANLSSTMTDFRIGANQISGTIPPG-IRNLVNLIALTMEINKLHGTIP-DTIGELKNL 281
           H +  L + +    +  N I+  +       L +L  L +E       I  +T   L +L
Sbjct: 23  HQVPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 282 QQLSLYNNSLQGSIPSS-LGNLTKLVELPLSYNNLQGNI--PSSLGNCQILRMFNASRNK 338
             L L  N     + +     L  L  L L+  NL G +   +       L M     N 
Sbjct: 82  IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 339 LTGALPHQLL-SITTLTLSLDLSNNLLN----------GSLPLQVGNLKNLVKLDISGNQ 387
           +    P     ++      LDL+ N +                 +  L ++   D++   
Sbjct: 141 IKKIQPASFFLNMRRFH-VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 388 FSGVIPVTLSACVSLEYLNISRN---------FFHGIIPLSLSSLKSIKEFNV----SSN 434
                        S+  L++S N         FF  I    + SL     +N+       
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 435 NLSGLIPEFLKNL--SFMEFLDLSYNHFEGEVPKKGVFSNKTK---ISLQGN 481
           N         K L  S ++  DLS +     +  K VFS+ T    ++L  N
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALL-KSVFSHFTDLEQLTLAQN 309

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (297), Expect = 3e-28
 Identities = 84/468 (17%), Positives = 164/468 (35%), Gaps = 22/468 (4%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
                L +S+N +      +I SL  L+ L I  N +             L+   +  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGM-FPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125
           L  KI        NL  L++  N F  +   +   N+S L+++ L          +    
Sbjct: 81  L-VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-KSSVLPIA 136

Query: 126 NLPNLKALAIGGNNFFGSI-PNSLSN--ASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN 182
           +L   K L + G  +     P  L +    +L I+  T+ +    + +   ++ NL   N
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANL--SSTMTDFRIGA 240
           ++        +  L  +  L     L  ++L   +        I  L   +T+  F I  
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 241 NQISGTIPPGI-----RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSI 295
            ++ G +          +L  L    +  +              N+   +   +  +   
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 296 PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLT- 354
                 ++  + L  S N L   +  + G+   L       N+L   L       T +  
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKS 375

Query: 355 -LSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFF 412
              LD+S N ++           K+L+ L++S N  +  I   L     ++ L++  N  
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433

Query: 413 HGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHF 460
              IP  +  L++++E NV+SN L  +       L+ ++ + L  N +
Sbjct: 434 KS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (290), Expect = 2e-27
 Identities = 77/415 (18%), Positives = 147/415 (35%), Gaps = 31/415 (7%)

Query: 7   SNLIELRVSKNKLEG-QIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGN 65
            NL  L +S N  +   I +E G++  L+ L +   +L       + +L+  KV  ++G 
Sbjct: 90  VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 66  SLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125
           + G K       L++    ++     +      I ++S      L  +     L  +   
Sbjct: 150 TYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
              ++               N   +   L  ++ T N       +       + + ++  
Sbjct: 208 YFLSI---------LAKLQTNPKLSNLTLNNIETTWNSFIR--ILQLVWHTTVWYFSISN 256

Query: 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245
             L  G  +  DF    T+  +L +  + ++ FG      I  + S M       +    
Sbjct: 257 VKL-QGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG---NL 302
                   +   + L    N L  T+ +  G L  L+ L L  N L+  +         +
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQM 373

Query: 303 TKLVELPLSYNNLQGNIP----SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLD 358
             L +L +S N++  +      S   +   L M   S N LT  +   L     +   LD
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM---SSNILTDTIFRCLPPRIKV---LD 427

Query: 359 LSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH 413
           L +N +  S+P QV  L+ L +L+++ NQ   V         SL+ + +  N + 
Sbjct: 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.6 bits (243), Expect = 2e-21
 Identities = 62/373 (16%), Positives = 117/373 (31%), Gaps = 18/373 (4%)

Query: 103 SSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSN 162
                + +  N  S  L     ++L  L+ L I  N       +       LE LDL+ N
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 163 QLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGEL 222
           +L     I      NL  L+L  N       + L       N S LK + L         
Sbjct: 80  KLV---KISCHPTVNLKHLDLSFNAF-----DALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 223 PHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQ 282
              IA+L+ +     +G              L +    ++ I          I ++    
Sbjct: 132 VLPIAHLNISKVLLVLGETYGE---KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 283 QLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGA 342
             +L  ++++  +  +  +    +   L  N    N+  +L N +          +L   
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL--TLNNIETTWNSFIRILQLVWH 246

Query: 343 LPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSL 402
                 SI+ + L   L     + S      +LK L    +  + F            ++
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGT----SLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 403 EYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG 462
              N + +    +  L  S +      + S+N L+  + E   +L+ +E L L  N  + 
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 463 EVPKKGVFSNKTK 475
                 + +    
Sbjct: 363 LSKIAEMTTQMKS 375

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.2 bits (190), Expect = 5e-15
 Identities = 51/262 (19%), Positives = 90/262 (34%), Gaps = 15/262 (5%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSL 286
            +LS   T   I  N IS      I +L  L  L +  N++           + L+ L L
Sbjct: 17  KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 287 YNNSLQGSIPSSLGNLTKLVELPLSYNNLQG-NIPSSLGNCQILRMFNASRNKLTGALPH 345
            +N L   I         L  L LS+N      I    GN   L+    S   L  +   
Sbjct: 77  SHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 346 QLLSITTLTLSLDLSNNLLNGSLP--LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE 403
            +  +    + L L         P  LQ  N ++L  +  +  +F  ++ V++    +LE
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 404 YLNISRNFFHGIIPLSLSSLKSIKEF---------NVSSNNLSGLIPEFLKNLSFMEFLD 454
             NI            LS L  ++           N+ +   S +    L   + + +  
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 455 LSYNHFEGEVPKKGVFSNKTKI 476
           +S    +G++  +    + T +
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSL 275

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 4/147 (2%)

Query: 350 ITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISR 409
           ++  T  L++S N ++      + +L  L  L IS N+   +          LEYL++S 
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 410 NFFHGIIPLSLSSLKSIKEFNVSSNNLSGL-IPEFLKNLSFMEFLDLSYNHFEGEVPKKG 468
           N       +S     ++K  ++S N    L I +   N+S ++FL LS  H E       
Sbjct: 79  NKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 469 VFSNKTKISLQGNVKLCGGIDELHLPS 495
              N +K+ L          D   L  
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQD 162

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 27/186 (14%)

Query: 4   SRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYII 63
           S+ S  + L  S N L   + E  G L  L+TL +  N L  +L       + +K     
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMK----- 374

Query: 64  GNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSIC-NISSLEWIYLPFNRFSGSLPLD 122
                           +L  L++ +N  S    +  C    SL  + +  N  + ++   
Sbjct: 375 ----------------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN 182
           +    P +K L +  N    SIP  +     L+ L++ SNQLK      F  L +L  + 
Sbjct: 419 L---PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474

Query: 183 LEQNNL 188
           L  N  
Sbjct: 475 LHTNPW 480

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  116 bits (293), Expect = 5e-28
 Identities = 69/428 (16%), Positives = 146/428 (34%), Gaps = 51/428 (11%)

Query: 55  SALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNR 114
                       +      +   L  L  L+   +  + M    I  ++ L  +    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75

Query: 115 FSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSS 174
            + +L L       NL  LA   N    ++   ++  + L  L+  +N+L     +D S 
Sbjct: 76  IT-TLDL---SQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT---KLDVSQ 125

Query: 175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMT 234
              L++LN  +N L      ++D    +++ + L  +  + N+   +L   +   +  +T
Sbjct: 126 NPLLTYLNCARNTL-----TEID----VSHNTQLTELDCHLNKKITKLD--VTPQTQ-LT 173

Query: 235 DFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS 294
                 N+I+  +   +     L  L  + N +   +   + +   L  L   +N L   
Sbjct: 174 TLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-E 226

Query: 295 IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLT 354
           I   +  LT+L     S N L     S+L     L   +  +  L        + +T  T
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLLE------IDLTHNT 275

Query: 355 LSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414
             +            L V +   L  LD      +    + LS    L YL ++      
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNT---E 329

Query: 415 IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKT 474
           +  L +S    +K  +  + ++       +  +  +     +       +PK+ + +N  
Sbjct: 330 LTELDVSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTI-TMPKETLTNNSL 386

Query: 475 KISLQGNV 482
            I++  ++
Sbjct: 387 TIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (273), Expect = 2e-25
 Identities = 76/448 (16%), Positives = 139/448 (31%), Gaps = 61/448 (13%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           +  + + L  L    + +       I  L  L  L    N +T  L   +   + L    
Sbjct: 37  SEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLA 91

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
              N L   +   +  L  L  LN   N+ + +    +     L ++    N  +  + +
Sbjct: 92  CDSNKL-TNLD--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLT-EIDV 144

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
               +   L  L    N     +   ++  + L  LD + N++     +D S  K L+ L
Sbjct: 145 S---HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRL 196

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
           N + NN+       LD          L  +   +N+   E+   +  L+  +T F    N
Sbjct: 197 NCDTNNI-----TKLDL----NQNIQLTFLDCSSNKL-TEID--VTPLTQ-LTYFDCSVN 243

Query: 242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
            ++  +      L  L  L      L   I   +     L             +   + +
Sbjct: 244 PLT-ELDVS--TLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTH 295

Query: 302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTL--SLDL 359
            T+L  L      +   +   L     L     +  +LT       L ++  T   SL  
Sbjct: 296 NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE------LDVSHNTKLKSLSC 346

Query: 360 SNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSA-----CVSLEYLNISRNFFHG 414
            N  +       VG +  L     +  Q   +   TL+       VS + L+   N  + 
Sbjct: 347 VNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN- 403

Query: 415 IIPLSLSSLKSIKEFNVSSNNLSGLIPE 442
            I      +       ++  NLS   P 
Sbjct: 404 -IEPGDGGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  103 bits (259), Expect = 1e-23
 Identities = 63/434 (14%), Positives = 133/434 (30%), Gaps = 54/434 (12%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
            N      +  +++         L  L +L    + +T  +      L+ L       N+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGI-EKLTGLTKLICTSNN 75

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           +   +   L    NL  L    N+ + +    +  ++ L ++    N+ +  L +     
Sbjct: 76  I-TTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT-KLDVS---Q 125

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
            P L  L    N     I   +S+ + L  LD   N+      +D +    L+ L+   N
Sbjct: 126 NPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFN 180

Query: 187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246
            +      +LD     +    L  ++   N    +L   +      +T     +N+++  
Sbjct: 181 KI-----TELDV----SQNKLLNRLNCDTNNI-TKLD--LNQNIQ-LTFLDCSSNKLT-E 226

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLV 306
           I   +  L  L      +N L   +   +  L  L  L      L   I   L + T+L+
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLI 278

Query: 307 ELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLT--LSLDLSNNLL 364
                           + +   L + +     +T       L ++     + L L+N  L
Sbjct: 279 YFQAEGCRK--IKELDVTHNTQLYLLDCQAAGITE------LDLSQNPKLVYLYLNNTEL 330

Query: 365 NGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK 424
              L +   +   L  L              +    +L     +      +   +L++  
Sbjct: 331 T-ELDV--SHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNNS 385

Query: 425 SIKEFNVSSNNLSG 438
                +    +  G
Sbjct: 386 LTIAVSPDLLDQFG 399

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  114 bits (287), Expect = 6e-27
 Identities = 56/334 (16%), Positives = 114/334 (34%), Gaps = 44/334 (13%)

Query: 123 IAVNLPNLKALAIGGNNFFGSIPNSLSNA----SNLEILDLTSNQLKGKVS-IDFSSLKN 177
           +++ LP     ++  N+F+ +I  + ++        E   L        VS +    +  
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 178 LSWLNLEQNNLGMGTANDLDFVTFL--TNCSSLKVISLYANQFGGELPHSIANLSSTMTD 235
            S L L + NL           + L       + V+ +  N     LP   A+L      
Sbjct: 61  FSELQLNRLNL-----------SSLPDNLPPQITVLEITQNALI-SLPELPASL----EY 104

Query: 236 FRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSI 295
                N++S T+P    +L +L    ++ N+L   +P+       L+ ++  NN L   +
Sbjct: 105 LDACDNRLS-TLPELPASLKHL---DVDNNQLT-MLPELPA---LLEYINADNNQLT-ML 155

Query: 296 PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG--ALPHQLLSITTL 353
           P    +L  L    +  N L   +P    + + L   + S N L    A+P +       
Sbjct: 156 PELPTSLEVLS---VRNNQLTF-LPELPESLEAL---DVSTNLLESLPAVPVRNHHSEET 208

Query: 354 TLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH 413
            +      N +   +P  + +L     + +  N  S  I  +LS   +    +  R +F 
Sbjct: 209 EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

Query: 414 GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447
             +     +       +  +          +  +
Sbjct: 268 --MSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (260), Expect = 2e-23
 Identities = 57/345 (16%), Positives = 115/345 (33%), Gaps = 43/345 (12%)

Query: 27  IGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTL--GLLRNLVDL 84
           I +  +L   +  +N ++G   D+       +   + G +   +  + L   L+    +L
Sbjct: 7   INNNFSLSQNSF-YNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSEL 64

Query: 85  NVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSI 144
            +     S   P ++     +  + +  N    SLP   A    +L+ L    N    ++
Sbjct: 65  QLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLPELPA----SLEYLDACDNRL-STL 115

Query: 145 PNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTN 204
           P   ++   L+ LD+ +NQL     +       L ++N + N L                
Sbjct: 116 PELPAS---LKHLDVDNNQLT---MLP-ELPALLEYINADNNQL----------TMLPEL 158

Query: 205 CSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEI 264
            +SL+V+S+  NQ    LP    +L        +  N +  ++P       +     +  
Sbjct: 159 PTSLEVLSVRNNQLT-FLPELPESL----EALDVSTNLLE-SLPAVPVRNHHSEETEIFF 212

Query: 265 ----NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIP 320
               N++   IP+ I  L     + L +N L   I  SL   T   +       +  ++ 
Sbjct: 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG--PRIYFSMS 269

Query: 321 SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN 365
               N     + +A            +  I       + +N    
Sbjct: 270 DGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.1 bits (244), Expect = 1e-21
 Identities = 53/265 (20%), Positives = 94/265 (35%), Gaps = 36/265 (13%)

Query: 205 CSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA------NQISGTIPPGIRNLVNLI 258
                  SL  N F   +  + A+  S    +   A      N+    +   +  +    
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFS 62

Query: 259 ALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGN 318
            L +    L  ++PD +     +  L +  N+L  S+P    +L  L       N L   
Sbjct: 63  ELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYLD---ACDNRLS-T 114

Query: 319 IPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNL 378
           +P    + + L   +   N+LT  LP        L   ++  NN L   LP    +L+  
Sbjct: 115 LPELPASLKHL---DVDNNQLT-MLPE---LPALLE-YINADNNQLT-MLPELPTSLE-- 163

Query: 379 VKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI---IPLSLSSLKSIKEFNVSSNN 435
             L +  NQ +  +P       SLE L++S N    +      +  S ++   F    N 
Sbjct: 164 -VLSVRNNQLT-FLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218

Query: 436 LSGLIPEFLKNLSFMEFLDLSYNHF 460
           ++ + PE + +L     + L  N  
Sbjct: 219 ITHI-PENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.4 bits (237), Expect = 9e-21
 Identities = 53/248 (21%), Positives = 92/248 (37%), Gaps = 34/248 (13%)

Query: 241 NQISGT---IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS 297
           N ISGT                     N+    + + +  +    +L L   +L  S+P 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPD 76

Query: 298 SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSL 357
           +L    ++  L ++ N L  ++P    + + L   +A  N+L+  LP    S+      L
Sbjct: 77  NLP--PQITVLEITQNALI-SLPELPASLEYL---DACDNRLS-TLPELPASLK----HL 125

Query: 358 DLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP 417
           D+ NN L   LP     L+    ++   NQ + ++P   +   SLE L++  N    + P
Sbjct: 126 DVDNNQLT-MLPELPALLE---YINADNNQLT-MLPELPT---SLEVLSVRNNQLTFL-P 176

Query: 418 LSLSSLKSIKEFNVSSNNLSGL---IPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNK 473
               SL+     +VS+N L  L         +     F     N     +P+        
Sbjct: 177 ELPESLE---ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232

Query: 474 TKISLQGN 481
             I L+ N
Sbjct: 233 CTIILEDN 240

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 3e-17
 Identities = 61/359 (16%), Positives = 117/359 (32%), Gaps = 62/359 (17%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           +   EL++++  L   +P+ +     +  L I  N L   LP+   +L  L       N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYLDACD---NR 111

Query: 67  LGGKIPTTL-GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125
           L     +TL  L  +L  L+V  N+ + M P        LE+I    N+ +  LP     
Sbjct: 112 L-----STLPELPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLP----E 157

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLS----WL 181
              +L+ L++  N     +P       +LE LD+++N L+  +        +      + 
Sbjct: 158 LPTSLEVLSVRNNQ-LTFLPELP---ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFF 212

Query: 182 NLEQNNLGMGTANDLDFVTFL----TNCSSLKVISLYANQFGGELPHSIANLSST--MTD 235
              +N +           T +     +      I L  N     +  S++  ++      
Sbjct: 213 RCRENRI-----------THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 236 FRIGANQISGTIPPGIRNLVNLIA--LTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQG 293
            RI  +   G      R L + +              I       ++    S + + L  
Sbjct: 262 PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD 321

Query: 294 S------------IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT 340
           +            + + L  L+   EL      +  +   S  +   L   N  +  L 
Sbjct: 322 TVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (266), Expect = 2e-25
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 12/243 (4%)

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSL--QGSIPSSLGNLT 303
           ++P GI    +   L +E NKL         +L  L +LSL +N L  +G    S    T
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 304 KLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNL 363
            L  L LS+N +   + S+    + L   +   + L       +       + LD+S+  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 364 LNGSLPLQV-GNLKNLVKLDISGNQF-SGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421
                   +   L +L  L ++GN F    +P   +   +L +L++S+     + P + +
Sbjct: 138 TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK---KGVFSNKTKISL 478
           SL S++  N+S NN   L     K L+ ++ LD S NH      K   +   S+   ++L
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNL 255

Query: 479 QGN 481
             N
Sbjct: 256 TQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 1e-23
 Identities = 53/256 (20%), Positives = 91/256 (35%), Gaps = 14/256 (5%)

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLD 197
           +    S+P  +   S+   L+L SN+L+      F  L  L+ L+L  N L         
Sbjct: 16  SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73

Query: 198 FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVN 256
                   +SLK + L  N     +  +   L   +       + +       +  +L N
Sbjct: 74  D----FGTTSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 257 LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS-SLGNLTKLVELPLSYNNL 315
           LI L +               L +L+ L +  NS Q +        L  L  L LS   L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 316 QGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV--G 373
           +   P++  +   L++ N S N            + +L   LD S N +  +   Q    
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ-VLDYSLNHIM-TSKKQELQH 245

Query: 374 NLKNLVKLDISGNQFS 389
              +L  L+++ N F+
Sbjct: 246 FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 4e-22
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 9/240 (3%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLH--GTIPDTIGELKNLQQ 283
             + S+ T   + +N++  ++P G+   L  L  L++  N L   G    +     +L+ 
Sbjct: 24  TGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 284 LSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSL-GNCQILRMFNASRNKLTGA 342
           L L  N +  ++ S+   L +L  L   ++NL+     S+  + + L   + S      A
Sbjct: 83  LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 343 LPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVS 401
                  +++L   L ++ N    +    +   L+NL  LD+S  Q   + P   ++  S
Sbjct: 142 FNGIFNGLSSLE-VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 402 LEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL-SFMEFLDLSYNHF 460
           L+ LN+S N F  +       L S++  + S N++     + L++  S + FL+L+ N F
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.2 bits (240), Expect = 5e-22
 Identities = 52/251 (20%), Positives = 91/251 (36%), Gaps = 16/251 (6%)

Query: 71  IPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFS-GSLPLDIAVNLPN 129
           +PT  G+  +   L +  N+   +       ++ L  + L  N  S             +
Sbjct: 22  VPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 130 LKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNL 188
           LK L +  N    ++ ++      LE LD   + LK       F SL+NL +L++   + 
Sbjct: 80  LKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 189 GMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSI-ANLSSTMTDFRIGANQISGTI 247
            +      +        SSL+V+ +  N F       I   L + +T   +   Q+   +
Sbjct: 139 RVAFNGIFN------GLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQCQLE-QL 190

Query: 248 PPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNL-TKL 305
            P    +L +L  L M  N            L +LQ L    N +  S    L +  + L
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250

Query: 306 VELPLSYNNLQ 316
             L L+ N+  
Sbjct: 251 AFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 7e-21
 Identities = 54/251 (21%), Positives = 89/251 (35%), Gaps = 19/251 (7%)

Query: 118 SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK--VSIDFSSL 175
           S+P  I     +   L +  N             + L  L L+SN L  K   S      
Sbjct: 21  SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 176 KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSI-ANLSSTMT 234
            +L +L+L  N +   ++N             L+ +    +        S+  +L + + 
Sbjct: 78  TSLKYLDLSFNGVITMSSN-------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LI 129

Query: 235 DFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTI-PDTIGELKNLQQLSLYNNSLQ 292
              I           GI   L +L  L M  N       PD   EL+NL  L L    L+
Sbjct: 130 YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 293 GSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITT 352
              P++  +L+ L  L +S+NN              L++ + S N +      Q L    
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFP 247

Query: 353 LTLS-LDLSNN 362
            +L+ L+L+ N
Sbjct: 248 SSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 50/242 (20%), Positives = 94/242 (38%), Gaps = 12/242 (4%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQ-LPDFV-GNLSALKVFYIIG 64
           S+   L +  NKL+         L  L  L++  N L+ +          ++LK   +  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 65  NSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSI-CNISSLEWIYLPFNRFSGSLPLDI 123
           N +   + +    L  L  L+   +    M   S+  ++ +L ++ +            I
Sbjct: 88  NGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

Query: 124 AVNLPNLKALAIGGNNFFGSI-PNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN 182
              L +L+ L + GN+F  +  P+  +   NL  LDL+  QL+      F+SL +L  LN
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ 242
           +  NN        LD   +    +SL+V+    N         + +  S++    +  N 
Sbjct: 206 MSHNNF-----FSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 243 IS 244
            +
Sbjct: 260 FA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 11/220 (5%)

Query: 3   LSRYSNLIELRVSKNKLEGQ--IPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVF 60
             + + L +L +S N L  +    +      +L+ L + FN +   +      L  L+  
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106

Query: 61  YIIGNSLGGKIPT-TLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSL 119
               ++L           LRNL+ L++        F      +SSLE + +  N F  + 
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 120 PLDIAVNLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSIDFSSLKNL 178
             DI   L NL  L +        +   + ++ S+L++L+++ N      +  +  L +L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 179 SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF 218
             L+   N++                 SSL  ++L  N F
Sbjct: 226 QVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQNDF 260

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  107 bits (268), Expect = 2e-24
 Identities = 74/467 (15%), Positives = 156/467 (33%), Gaps = 22/467 (4%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFV-GNLSALKVFYIIGN 65
                L +S+N +      +I  L  L+ L +  N +   L   V      L+   +  N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 66  SLGGKIPTTLGLLRNLVDLNVGENRFSGM-FPRSICNISSLEWIYLPFNRFSGSLPLDIA 124
            L   I      + +L  L++  N F  +   +   N++ L ++ L   +F   L L   
Sbjct: 111 RLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPV 166

Query: 125 VNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLE 184
            +L     L    +              N  +L L  +           S+  L  L L 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 185 QNNLGMGTANDLD-FVTFLTNCSSLKVISLYANQFGGELPHSIANL--SSTMTDFRIGAN 241
              L       L  F++ LT   +L  ++L   +   +    +        +    I   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 242 QISGTIPPGI-----RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
            I+  I           L +L+   ++      +          +    L  +       
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 297 SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP---HQLLSITTL 353
               + +    L  + N    ++       + L+     RN L            ++++L
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSL 405

Query: 354 TLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH 413
                  N+L + +        ++++ L++S N  +G +   L     ++ L++  N   
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM 463

Query: 414 GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHF 460
             IP  ++ L++++E NV+SN L  +       L+ ++++ L  N +
Sbjct: 464 -SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 95.3 bits (237), Expect = 1e-20
 Identities = 67/446 (15%), Positives = 141/446 (31%), Gaps = 38/446 (8%)

Query: 1   ANLSRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKV 59
            ++S  S L  LR+S N++   +   +     +L+ L +  N L   +      +++L+ 
Sbjct: 70  PDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMASLRH 125

Query: 60  FYIIGNSLGG-KIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGS 118
             +  N      +    G L  L  L +   +F  +    + ++  L  I L    +   
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH-LSCILLDLVSYHIK 184

Query: 119 LPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNL 178
                ++ +PN   L +  +           + + L  L L++ +L  +      +  + 
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 179 SWLNLEQNNLGMGTANDLDFVTF----LTNCSSLKVISLYANQFGGELPHSIANLSSTMT 234
                   N+ +         +           ++ +++Y       +       S T  
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 235 DF----RIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNS 290
                  +       +          +    + I+              +   L+   N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 291 LQGSIPSSLGNLTKLVELPLSYNNLQ--GNIPSSLGNCQILRMFNASRNKLTGALPHQLL 348
              S+      L +L  L L  N L+    +     N   L   + S N L      +  
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 349 SITTLTLSLDLSNNLLNG---------------------SLPLQVGNLKNLVKLDISGNQ 387
           +     L L+LS+N+L G                     S+P  V +L+ L +L+++ NQ
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ 484

Query: 388 FSGVIPVTLSACVSLEYLNISRNFFH 413
              V         SL+Y+ +  N + 
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 7e-17
 Identities = 59/381 (15%), Positives = 118/381 (30%), Gaps = 24/381 (6%)

Query: 103 SSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSL-SNASNLEILDLTS 161
              + + L  N  S  L +     L  L+ L +  N    S+   +     +LE LD++ 
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSH 109

Query: 162 NQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGE 221
           N+L+   +I    + +L  L+L  N+      + L       N + L  + L A +F   
Sbjct: 110 NRLQ---NISCCPMASLRHLDLSFNDF-----DVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 222 LPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNL 281
               +A+L  +     + +  I G        + N   L +  +            +  L
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKG-GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG 341
             L L N  L       L      +    +  N+      +   C  +++F         
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC-SVKLFQ-------- 271

Query: 342 ALPHQLLSITTLTLS-LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV 400
                   +  L +  L ++  +           LK+L+   +    F        S   
Sbjct: 272 --FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329

Query: 401 SLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHF 460
            +    +S +    I  +   S  S    N + N  +  + +    L  ++ L L  N  
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 461 EGEVPKKGVFSNKTKISLQGN 481
           +       +  N + +     
Sbjct: 390 KNFFKVALMTKNMSSLETLDV 410

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 350 ITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNIS 408
           +   T +L LS N ++  L +     L  L  L +S N+   +          LEYL++S
Sbjct: 50  LPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108

Query: 409 RNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL-IPEFLKNLSFMEFLDLSYN 458
            N       +S   + S++  ++S N+   L + +   NL+ + FL LS  
Sbjct: 109 HNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (253), Expect = 5e-23
 Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 12/237 (5%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
             +S+      +  NQI   I     ++L +L  L +  N +          L NL  L 
Sbjct: 60  DGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 286 LYNNSLQGSIPS-SLGNLTKLVELPLSYNNL---QGNIPSSLGNCQILRMFNASRNKLTG 341
           L++N L  +IP+ +   L+KL EL L  N +        + + + + L +      +L+ 
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE--LKRLSY 175

Query: 342 ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVS 401
                   ++ L   L+L+   L   +P  +  L  L +LD+SGN  S + P +    + 
Sbjct: 176 ISEGAFEGLSNLR-YLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 402 LEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458
           L+ L + ++    I   +  +L+S+ E N++ NNL+ L  +    L  +E + L +N
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.1 bits (229), Expect = 6e-20
 Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 29/255 (11%)

Query: 71  IPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNL 130
           +P   G+  N   LN+ EN+   +   S  ++  LE + L  N    ++ +     L NL
Sbjct: 58  VPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANL 114

Query: 131 KALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSID---FSSLKNLSWLNLEQN 186
             L +  N    +IP  +    S L+ L L +N ++   SI    F+ + +L  L+L + 
Sbjct: 115 NTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIE---SIPSYAFNRIPSLRRLDLGEL 170

Query: 187 N----LGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ 242
                +  G              S+L+ ++L       E+P+ +  L   + +  +  N 
Sbjct: 171 KRLSYISEGA---------FEGLSNLRYLNLAMCNLR-EIPN-LTPLIK-LDELDLSGNH 218

Query: 243 ISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN 301
           +S  I PG  + L++L  L M  +++     +    L++L +++L +N+L          
Sbjct: 219 LS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 302 LTKLVELPLSYNNLQ 316
           L  L  + L +N   
Sbjct: 278 LHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 11/235 (4%)

Query: 206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEI 264
           ++ ++++L+ NQ      +S  +L   +   ++  N I  TI  G    L NL  L +  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 265 NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIPS-S 322
           N+L          L  L++L L NN ++ SIPS     +  L  L L        I   +
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 323 LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKL 381
                 LR  N +   L   +P+ L  +  L   LDLS N L+ ++       L +L KL
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLD-ELDLSGNHLS-AIRPGSFQGLMHLQKL 236

Query: 382 DISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
            +  +Q   +         SL  +N++ N    +     + L  ++  ++  N  
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 53/290 (18%), Positives = 105/290 (36%), Gaps = 42/290 (14%)

Query: 6   YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGN 65
            +   ++   +  L  ++P+ I +  N + L +  N +     +   +L  L++  +  N
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 66  SLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125
            +          L NL  L + +NR + +   +   +S L+ ++L  N    S+P     
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN 157

Query: 126 NLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSI-DFSSLKNLSWLNL 183
            +P+L+ L +G       I   +    SNL  L+L    L+    I + + L  L  L+L
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDL 214

Query: 184 EQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQI 243
             N+L                   L+ + +                           +QI
Sbjct: 215 SGNHLSAIRPGS------FQGLMHLQKLWMI-------------------------QSQI 243

Query: 244 SGTIPPG-IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ 292
              I      NL +L+ + +  N L     D    L +L+++ L++N   
Sbjct: 244 Q-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 5e-17
 Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 11/207 (5%)

Query: 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKL 339
           N + L+L+ N +Q    +S  +L  L  L LS N+++     +      L       N+L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 340 TGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISG-NQFSGVIPVTLS 397
           T  +P+      +    L L NN +  S+P      + +L +LD+    + S +      
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 398 ACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSY 457
              +L YLN++      I   +L+ L  + E ++S N+LS + P   + L  ++ L +  
Sbjct: 183 GLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 458 NHFEGEVPKKGVFSNKTK---ISLQGN 481
           +  +  +  +  F N      I+L  N
Sbjct: 241 SQIQ-VIE-RNAFDNLQSLVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 14/217 (6%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
                +L  L++S+N +   I       L NL TL +  N LT         LS LK  +
Sbjct: 84  FKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142

Query: 62  IIGNSLGGKIPT-TLGLLRNLVDLNVGE-NRFSGMFPRSICNISSLEWIYLPFNRFSGSL 119
           +  N +   IP+     + +L  L++GE  R S +   +   +S+L ++ L        +
Sbjct: 143 LRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200

Query: 120 PLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLS 179
           P      L  L  L + GN+     P S     +L+ L +  +Q++      F +L++L 
Sbjct: 201 PNL--TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN 216
            +NL  NNL +   +        T    L+ I L+ N
Sbjct: 259 EINLAHNNLTLLPHD------LFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 335 SRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV 394
            R  L   +P  + + T     L+L  N +         +L++L  L +S N    +   
Sbjct: 51  VRKNLR-EVPDGISTNTR---LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106

Query: 395 TLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLD 454
             +   +L  L +  N    I   +   L  +KE  + +N +  +       +  +  LD
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166

Query: 455 LSYN 458
           L   
Sbjct: 167 LGEL 170

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  101 bits (253), Expect = 6e-23
 Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 12/237 (5%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
             + S      +  N I   I     R+L +L  L +  N +          L +L  L 
Sbjct: 71  QGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 286 LYNNSLQGSIPS-SLGNLTKLVELPLSYNNL---QGNIPSSLGNCQILRMFNASRNKLTG 341
           L++N L   IPS +   L+KL EL L  N +        + + +   L +      KL  
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL--KKLE- 185

Query: 342 ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVS 401
            +             L+L    +   +P  +  L  L +L++SGN F  + P +     S
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 402 LEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458
           L+ L +  +    I   +   L S+ E N++ NNLS L  +    L ++  L L +N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.9 bits (231), Expect = 4e-20
 Identities = 46/234 (19%), Positives = 85/234 (36%), Gaps = 9/234 (3%)

Query: 206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEI 264
           S+ + ++L  N        +  +L   +   ++G N I   I  G    L +L  L +  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHH-LEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 265 NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS-SL 323
           N L          L  L++L L NN ++     +   +  L+ L L        I   + 
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 324 GNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLD 382
                L+  N     +   +P+ L  +  L   L++S N     +       L +L KL 
Sbjct: 193 EGLFNLKYLNLGMCNIK-DMPN-LTPLVGLE-ELEMSGNHFP-EIRPGSFHGLSSLKKLW 248

Query: 383 ISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
           +  +Q S +         SL  LN++ N    +     + L+ + E ++  N  
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.4 bits (222), Expect = 5e-19
 Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 25/253 (9%)

Query: 71  IPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNL 130
           +P   G+  N   LN+ EN    +   +  ++  LE + L  N     + +     L +L
Sbjct: 69  VPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASL 125

Query: 131 KALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSID---FSSLKNLSWLNLEQN 186
             L +  N     IP  +    S L  L L +N ++   SI    F+ + +L  L+L + 
Sbjct: 126 NTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIE---SIPSYAFNRVPSLMRLDLGEL 181

Query: 187 NLGMGTANDLDFVT--FLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
                    L++++        +LK ++L       ++P+ +  L   + +  +  N   
Sbjct: 182 K-------KLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVG-LEELEMSGNHFP 231

Query: 245 GTIPPG-IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLT 303
             I PG    L +L  L +  +++     +    L +L +L+L +N+L          L 
Sbjct: 232 -EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 304 KLVELPLSYNNLQ 316
            LVEL L +N   
Sbjct: 291 YLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 10/205 (4%)

Query: 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQIL 329
            +P  I    N + L+L  N++Q     +  +L  L  L L  N+++     +      L
Sbjct: 68  EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 330 RMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISG-NQ 387
                  N LT  +P       +    L L NN +  S+P      + +L++LD+    +
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 388 FSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447
              +         +L+YLN+       +   +L+ L  ++E  +S N+   + P     L
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 448 SFMEFLDLSYNHFEGEVPKKGVFSN 472
           S ++ L +  +     +  +  F  
Sbjct: 242 SSLKKLWVMNSQVS-LIE-RNAFDG 264

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 50/289 (17%), Positives = 88/289 (30%), Gaps = 63/289 (21%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           SN   L + +N ++    +    L +L+ L +  N +          L++L    +  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L          L  L +L +  N                            S+P      
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIE-------------------------SIPSYAFNR 169

Query: 127 LPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSI-DFSSLKNLSWLNLE 184
           +P+L  L +G       I   +     NL+ L+L    +K    + + + L  L  L + 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMS 226

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
            N+                  SSLK + +                           +Q+S
Sbjct: 227 GNHFPEIRPGS------FHGLSSLKKLWVM-------------------------NSQVS 255

Query: 245 GTIPPG-IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ 292
             I       L +L+ L +  N L     D    L+ L +L L++N   
Sbjct: 256 -LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 12/218 (5%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
                +L  L++ +N +  QI       L +L TL +  N+LT         LS L+  +
Sbjct: 95  FRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGE-NRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
           +  N +          + +L+ L++GE  +   +   +   + +L+++ L        +P
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
                 L  L+ L + GN+F    P S    S+L+ L + ++Q+       F  L +L  
Sbjct: 213 NL--TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF 218
           LNL  NNL       L    F T    L  + L+ N +
Sbjct: 271 LNLAHNNLSS-----LPHDLF-TPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 335 SRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV 394
           +R  L+  +P  + S T     L+L  N +         +L +L  L +  N    +   
Sbjct: 62  TRRGLS-EVPQGIPSNTR---YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG 117

Query: 395 TLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLD 454
             +   SL  L +  N+   I   +   L  ++E  + +N +  +       +  +  LD
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177

Query: 455 LSYN 458
           L   
Sbjct: 178 LGEL 181

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 52/215 (24%), Positives = 85/215 (39%), Gaps = 6/215 (2%)

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKL 305
            +P GI        + +  N++      +    +NL  L L++N L     ++   L  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 306 VELPLSYNNLQGNIPSS-LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLL 364
            +L LS N    ++  +       L   +  R  L   L   L         L L +N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 365 NGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSL 423
             +LP     +L NL  L + GN+ S V         SL+ L + +N    + P +   L
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 424 KSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458
             +    + +NNLS L  E L  L  +++L L+ N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 45/252 (17%)

Query: 71  IPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNL 130
           +P   G+      + +  NR S +   S     +L  ++L  N  +  +       L  L
Sbjct: 26  VPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 131 KALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSID---FSSLKNLSWLNLEQN 186
           + L +  N    S+   +      L  L L    L+    +    F  L  L +L L+ N
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDN 139

Query: 187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246
            L       L   TF  +  +L  + L+ N+                            +
Sbjct: 140 AL-----QALPDDTF-RDLGNLTHLFLHGNRIS--------------------------S 167

Query: 247 IPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSS-LGNLTK 304
           +P    R L +L  L +  N++    P    +L  L  L L+ N+L  ++P+  L  L  
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRA 226

Query: 305 LVELPLSYNNLQ 316
           L  L L+ N   
Sbjct: 227 LQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 46/214 (21%), Positives = 79/214 (36%), Gaps = 8/214 (3%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
             + +      +  N+IS  +P    R   NL  L +  N L          L  L+QL 
Sbjct: 28  VGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 286 LYNNSLQGSIPSS-LGNLTKLVELPLSYNNLQGNIPS-SLGNCQILRMFNASRNKLTGAL 343
           L +N+   S+  +    L +L  L L    LQ  +          L+      N L  AL
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-AL 144

Query: 344 PHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSL 402
           P            L L  N ++ S+P +    L +L +L +  N+ + V P        L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 403 EYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
             L +  N    +   +L+ L++++   ++ N  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 35/240 (14%)

Query: 55  SALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNR 114
           +A +  ++ GN +      +    RNL  L +  N  + +   +   ++ LE + L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 115 FSGSLPLDIAVNLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSIDFS 173
              S+       L  L  L +        +        + L+ L L  N L+      F 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 174 SLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTM 233
            L NL+ L L  N +     + +    F     SL  + L+ N+                
Sbjct: 151 DLGNLTHLFLHGNRI-----SSVPERAF-RGLHSLDRLLLHQNRV--------------- 189

Query: 234 TDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ 292
                        + P   R+L  L+ L +  N L     + +  L+ LQ L L +N   
Sbjct: 190 -----------AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 43/213 (20%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           +    + +  N++         +  NL  L +  N L          L+ L+   +  N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 67  LGGKIP-TTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125
               +   T   L  L  L++       + P     +++L+++YL  N    +LP D   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
           +L NL  L + GN        +     +L+ L L  N++       F  L  L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQF 218
           NNL       L          +L+ + L  N +
Sbjct: 211 NNLSA-----LPTEAL-APLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 39/216 (18%), Positives = 67/216 (31%), Gaps = 33/216 (15%)

Query: 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQIL 329
            +P  I      Q++ L+ N +     +S      L  L L  N L   I +        
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDA-------- 73

Query: 330 RMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQF 388
                       A    L  +  L    DLS+N    S+       L  L  L +     
Sbjct: 74  -----------AAF-TGLALLEQL----DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 389 SGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLS 448
             + P       +L+YL +  N    +   +   L ++    +  N +S +     + L 
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 449 FMEFLDLSYNHFEGEVPKKGVFSNKTK---ISLQGN 481
            ++ L L  N     V     F +  +   + L  N
Sbjct: 178 SLDRLLLHQNRVA-HVH-PHAFRDLGRLMTLYLFAN 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 4/188 (2%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFV-GNLSALKVF 60
                NL  L +  N L  +I       L  L+ L +  N     +       L  L   
Sbjct: 52  FRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLP 120
           ++    L    P     L  L  L + +N    +   +  ++ +L  ++L  NR S S+P
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVP 169

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
                 L +L  L +  N      P++  +   L  L L +N L    +   + L+ L +
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 181 LNLEQNNL 188
           L L  N  
Sbjct: 230 LRLNDNPW 237

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 53/293 (18%), Positives = 101/293 (34%), Gaps = 23/293 (7%)

Query: 103 SSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSN 162
                + L  N  S  L  D    L +L AL +  N        + S    L+ L ++ N
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 163 QLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGEL 222
            L     I  +   +L  L +  N +       +    F +   ++  I +  N      
Sbjct: 113 HLV---EIPPNLPSSLVELRIHDNRI-----RKVPKGVF-SGLRNMNCIEMGGNPLENSG 163

Query: 223 PHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQ 282
               A     +   RI   +++  IP  +     L  L ++ NK+     + +     L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 283 QLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT-- 340
           +L L +N ++     SL  L  L EL L  N L   +P+ L + ++L++     N +T  
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279

Query: 341 --GALPHQLLSITTLTLS-LDLSNNLLNGSLPLQVG---NLKNLVKLDISGNQ 387
                      +     + + L NN +     +Q      + + + +     +
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVP-YWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 11/237 (4%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPG-IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
             +S   T   +  N IS  +     + L +L AL +  NK+          L+ LQ+L 
Sbjct: 50  KEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108

Query: 286 LYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT-GALP 344
           +  N L   IP +L   + LVEL +  N ++          + +       N L      
Sbjct: 109 ISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 345 HQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEY 404
                   L   L +S   L G   +     + L +L +  N+   +    L     L  
Sbjct: 166 PGAFDGLKLNY-LRISEAKLTG---IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221

Query: 405 LNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461
           L +  N    I   SLS L +++E ++ +N LS  +P  L +L  ++ + L  N+  
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 52/276 (18%), Positives = 95/276 (34%), Gaps = 20/276 (7%)

Query: 206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEI 264
               ++ L  N            L   +    +  N+IS  I       L  L  L +  
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQH-LYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111

Query: 265 NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ-GNIPSSL 323
           N L   IP       +L +L +++N ++         L  +  + +  N L+        
Sbjct: 112 NHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 324 GNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLD 382
            +   L     S  KLT  +P  L    TL   L L +N +  ++ L+       L +L 
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPKDLPE--TLN-ELHLDHNKIQ-AIELEDLLRYSKLYRLG 223

Query: 383 ISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPE 442
           +  NQ   +   +LS   +L  L++  N     +P  L  LK ++   + +NN++ +   
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 443 ------FLKNLSFMEFLDLSYNHFEGEVPKKGVFSN 472
                 F    ++   + L  N       +   F  
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 50/292 (17%), Positives = 97/292 (33%), Gaps = 24/292 (8%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
            +   L +  N +     ++   L +L  L +  N ++         L  L+  YI  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L  +IP    L  +LV+L + +NR   +       + ++  I +  N    S     A +
Sbjct: 114 L-VEIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
              L  L I        IP  L     L  L L  N+++     D      L  L L  N
Sbjct: 171 GLKLNYLRISEAK-LTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227

Query: 187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT 246
            +       ++  +  +   +L+ + L  N+    +P  + +L   +    +  N I+  
Sbjct: 228 QI-----RMIENGSL-SFLPTLRELHLDNNKL-SRVPAGLPDLKL-LQVVYLHTNNIT-K 278

Query: 247 IPPGI-------RNLVNLIALTMEINKLHGTI--PDTIGELKNLQQLSLYNN 289
           +                   +++  N +      P T   + +   +   N 
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 8/109 (7%)

Query: 376 KNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN 435
            +   LD+  N  S +          L  L +  N    I   + S L+ +++  +S N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTK---ISLQGN 481
           L  + P    +L     L +  N    +VP KGVFS       I + GN
Sbjct: 114 LVEIPPNLPSSL---VELRIHDNRIR-KVP-KGVFSGLRNMNCIEMGGN 157

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 55/321 (17%), Positives = 112/321 (34%), Gaps = 50/321 (15%)

Query: 76  GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAI 135
            L  +   L++  N+ + +      N+ +L  + L  N+ S  +       L  L+ L +
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL 107

Query: 136 GGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTAND 195
             N     +P  +     L+ L +  N++       F+ L  +  + L  N L    ++ 
Sbjct: 108 SKNQL-KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL---KSSG 161

Query: 196 LDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLV 255
           ++   F      L  I +              N+++               IP G+    
Sbjct: 162 IENGAF-QGMKKLSYIRIADT-----------NITT---------------IPQGL--PP 192

Query: 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNL 315
           +L  L ++ NK+      ++  L NL +L L  NS+      SL N   L EL L+ N L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 316 QGNIPSSLGNCQILRMFNASRNKLT---------GALPHQLLSITTLTLSLDLSNNLLNG 366
              +P  L + + +++     N ++              +  S + ++L    SN +   
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF---SNPVQYW 308

Query: 367 SLPLQV-GNLKNLVKLDISGN 386
            +       +     + +   
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 30/292 (10%)

Query: 206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEI 264
               ++ L  N+          NL + +    +  N+IS  I PG    LV L  L +  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 265 NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ-GNIP--- 320
           N+L   +P+     K LQ+L ++ N +     S    L +++ + L  N L+   I    
Sbjct: 110 NQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 321 -SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNL 378
              +     +R+   +   +T  +P  L    +LT  L L  N +   +       L NL
Sbjct: 167 FQGMKKLSYIRI---ADTNIT-TIPQGLPP--SLT-ELHLDGNKIT-KVDAASLKGLNNL 218

Query: 379 VKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSG 438
            KL +S N  S V   +L+    L  L+++ N     +P  L+  K I+   + +NN+S 
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277

Query: 439 L------IPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTK---ISLQGN 481
           +       P +    +    + L  N  +    +   F        + L   
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 56/293 (19%), Positives = 107/293 (36%), Gaps = 25/293 (8%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
            +   L +  NK+      +  +L NL TL +  N ++   P     L  L+  Y+  N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRF-SGSLPLDIAV 125
           L  ++P    + + L +L V EN  + +       ++ +  + L  N   S  +      
Sbjct: 112 L-KELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
            +  L  + I   N   +IP  L    +L  L L  N++    +     L NL+ L L  
Sbjct: 169 GMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245
           N++     + +D  +   N   L+ + L  N+   ++P  +A+    +    +  N IS 
Sbjct: 226 NSI-----SAVDNGSL-ANTPHLRELHLNNNKL-VKVPGGLADHKY-IQVVYLHNNNIS- 276

Query: 246 TIPPG-------IRNLVNLIALTMEINKLHGTI--PDTIGELKNLQQLSLYNN 289
            I               +   +++  N +      P T   +     + L N 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 93.0 bits (231), Expect = 1e-20
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 14/245 (5%)

Query: 71  IPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNL 130
           IP+   L RN ++L     +   +   +      LE I +  N     +  D+  NLP L
Sbjct: 24  IPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 131 KALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLG 189
             + I   N    I   +  N  NL+ L +++  +K    +          L+++ N   
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-- 139

Query: 190 MGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPP 249
               + ++  +F+       ++ L  N    E+ +S  N +          N +   +P 
Sbjct: 140 --NIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLE-ELPN 195

Query: 250 GI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVEL 308
            +       + L +   ++H      +  LK L+  S YN      +P +L  L  L+E 
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEA 251

Query: 309 PLSYN 313
            L+Y 
Sbjct: 252 SLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.4 bits (188), Expect = 3e-15
 Identities = 40/244 (16%), Positives = 73/244 (29%), Gaps = 10/244 (4%)

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSS-LGNLTK 304
            IP  +    N I L   + KL            +L+++ +  N +   I +    NL K
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 305 LVELPLSYNNLQGNIPSS-LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNL 363
           L E+ +   N    I      N   L+    S   +   LP      +   + LD+ +N+
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNI 139

Query: 364 LNGSLPLQV--GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS 421
              ++      G     V L ++ N    +     +     E      N    +      
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
                   ++S   +  L    L+NL  +            ++P         + SL   
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALMEASLTYP 256

Query: 482 VKLC 485
              C
Sbjct: 257 SHCC 260

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 9/190 (4%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAI-DFNYLTGQLPDFVGNLSALKVF 60
            S + +L ++ +S+N +   I  ++  +L  L  + I   N L    P+   NL  L+  
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 61  YIIGNSLGGKIPTTLGL-LRNLVDLNVGENRFSGMFP-RSICNISS-LEWIYLPFNRFSG 117
            I    +   +P    +     V L++ +N         S   +S     ++L  N    
Sbjct: 110 LISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167

Query: 118 SLPLDIAVNLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSIDFSSLK 176
            +    A N   L  L +  NN    +P +    AS   ILD++  ++    S    +LK
Sbjct: 168 EIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

Query: 177 NLSWLNLEQN 186
            L   +    
Sbjct: 227 KLRARSTYNL 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.3 bits (227), Expect = 5e-20
 Identities = 46/289 (15%), Positives = 96/289 (33%), Gaps = 29/289 (10%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
             +  L +S N++      ++   +NLQ L +  N +     D   +L +L+   +  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSI-CNISSLEWIYLPFNRFSGSLPLDIAV 125
           L     +    L +L  LN+  N +  +   S+  +++ L+ + +        +      
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
            L  L+ L I  ++     P SL +  N+  L L   Q    + I      ++  L L  
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 186 NNLGMGTANDLDFVTF--LTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQI 243
            +L     ++L       L    + + + +                              
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL------------------------- 266

Query: 244 SGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ 292
              +   +  +  L+ L    N+L          L +LQ++ L+ N   
Sbjct: 267 -FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.9 bits (226), Expect = 6e-20
 Identities = 53/270 (19%), Positives = 104/270 (38%), Gaps = 21/270 (7%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
           + L+  +    +  N+I+  I     +  VNL AL +  N ++    D+   L +L+ L 
Sbjct: 48  SGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106

Query: 286 LYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIPSSL-GNCQILRMFNASRNKLTGAL 343
           L  N L  ++ SS    L+ L  L L  N  +    +SL  +   L++           +
Sbjct: 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 344 PHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSL 402
             +  +  T    L++  + L  S   +   +++N+  L +   Q   ++ + +    S+
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 403 EYLNISRNFFHG--------IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLD 454
           E L +                   SL    + +   ++  +L   + + L  +S +  L+
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELE 283

Query: 455 LSYNHFEGEVPKKGVFSNKTK---ISLQGN 481
            S N  +  VP  G+F   T    I L  N
Sbjct: 284 FSRNQLKS-VP-DGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.8 bits (223), Expect = 1e-19
 Identities = 62/327 (18%), Positives = 117/327 (35%), Gaps = 57/327 (17%)

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLD 197
           +    SIP+ L+    ++ LDL++N++    + D     NL  L L  N +     N ++
Sbjct: 40  SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-----NTIE 92

Query: 198 FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVN 256
             +F ++  SL+ + L  N            LS+               +     + L +
Sbjct: 93  EDSF-SSLGSLEHLDLSYNY-----------LSN---------------LSSSWFKPLSS 125

Query: 257 LIALTMEINKLHGTIPDTI--GELKNLQQLSLYNNSLQGSIPS-SLGNLTKLVELPLSYN 313
           L  L +  N    T+ +T     L  LQ L + N      I       LT L EL +  +
Sbjct: 126 LTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 314 NLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVG 373
           +LQ   P SL + Q +        +    L    + +T+    L+L +  L+        
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT------- 236

Query: 374 NLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSS 433
                       ++ S     +L    +   + I+      ++ L L+ +  + E   S 
Sbjct: 237 ---------FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSR 286

Query: 434 NNLSGLIPEFLKNLSFMEFLDLSYNHF 460
           N L  +       L+ ++ + L  N +
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.3 bits (219), Expect = 4e-19
 Identities = 50/296 (16%), Positives = 104/296 (35%), Gaps = 29/296 (9%)

Query: 23  IPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLV 82
           IP  +     +++L +  N +T      +     L+   +  N +      +   L +L 
Sbjct: 46  IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 83  DLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFG 142
            L++  N  S +       +SSL ++ L  N +       +  +L  L+ L +G  + F 
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 143 SIP-NSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTF 201
            I     +  + LE L++ ++ L+        S++N+S L L      +     +D  + 
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 202 LTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALT 261
           +  C  L+   L    F                      +++S      +        + 
Sbjct: 224 VE-CLELRDTDLDTFHF----------------------SELSTGETNSLIKKFTFRNVK 260

Query: 262 MEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSS-LGNLTKLVELPLSYNNLQ 316
           +    L   +   + ++  L +L    N L+ S+P      LT L ++ L  N   
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 45/250 (18%), Positives = 81/250 (32%), Gaps = 21/250 (8%)

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS-SLGNLTK 304
           +IP G+     + +L +  N++       +    NLQ L L +N +  +I   S  +L  
Sbjct: 45  SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS 101

Query: 305 LVELPLSYNNLQGNIPS----SLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS 360
           L  L LSYN L  N+ S     L +   L +     N         L S  T    L + 
Sbjct: 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL---LGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 361 NNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN--------F 411
           N      +  +    L  L +L+I  +      P +L +  ++ +L +           F
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 412 FHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFS 471
                 +    L+         + LS      L        + ++       +      S
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277

Query: 472 NKTKISLQGN 481
              ++    N
Sbjct: 278 GLLELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
            +  LD+S N+ + +    L  CV+L+ L ++ N  + I   S SSL S++  ++S N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 437 SGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTK---ISLQGNVKL 484
           S L   + K LS + FL+L  N ++  + +  +FS+ TK   + +      
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTF 162

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 51/286 (17%), Positives = 88/286 (30%), Gaps = 25/286 (8%)

Query: 195 DLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG---I 251
               V       SL+ +    +        +    S ++    + A +I   I  G   +
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 252 RNLVNLIALTMEINKLHGTIPDTIGEL--KNLQQLSLYNNSLQG--SIPSSLGNL--TKL 305
             +  L  LT+E  ++ GT P  + E    +L  L+L N S     +  + L       L
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 306 VELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG-------ALPHQLLSITTLTLSLD 358
             L ++  +        +     L   + S N   G         P +  ++  L L  +
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR-N 210

Query: 359 LSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTL-SACVSLEYLNISRNFFHGIIP 417
                 +G           L  LD+S N                L  LN+S      +  
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 418 LSLSSLKSIKEFNVSSNNLSGL-IPEFLKNLSFMEFLDLSYNHFEG 462
              + L  +   ++S N L     P+ L  +     L L  N F  
Sbjct: 271 GLPAKLSVL---DLSYNRLDRNPSPDELPQV---GNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 1e-16
 Identities = 49/274 (17%), Positives = 85/274 (31%), Gaps = 22/274 (8%)

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANL--SSTMTDFRI 238
            +LE     + T  DL   T +    SLK +++ A +    +      +   S + +  +
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 239 GANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTI------GELKNLQQLSLYNNSLQ 292
              +++GT PP +          + +  +     D             L+ LS+      
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 293 GSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNC-------QILRMFNASRNKLTGALPH 345
                 +     L  L LS N   G        C       Q+L + NA     +G    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 346 QLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSACVSLEY 404
              +   L   LDLS+N L  +           L  L++S      V     +    L  
Sbjct: 223 LAAARVQLQ-GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSV 278

Query: 405 LNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSG 438
           L++S N        S   L  +   ++  N    
Sbjct: 279 LDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 38/249 (15%), Positives = 70/249 (28%), Gaps = 30/249 (12%)

Query: 228 NLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDT-IGELKNLQQLSL 286
           N S    D+    N +            +L  L   ++        T I +  +L++L++
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 287 YNNSLQGSIPSS---LGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGAL 343
               +   I      +  ++ L EL L    + G  P  L                    
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT---------------- 119

Query: 344 PHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE 403
                 +  L L              LQ      L  L I+           +    +L 
Sbjct: 120 ---GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 404 YLNISRNFFHGIIPLSLS----SLKSIKEFNVSSNN---LSGLIPEFLKNLSFMEFLDLS 456
            L++S N   G   L  +       +++   + +      SG+          ++ LDLS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 457 YNHFEGEVP 465
           +N       
Sbjct: 237 HNSLRDAAG 245

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 48/284 (16%), Positives = 82/284 (28%), Gaps = 23/284 (8%)

Query: 25  EEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLR----- 79
           E  G   +L+ L    +        F   + +L +  +   +         G LR     
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQ-FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 80  NLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNL-----PNLKALA 134
            L +L +     +G  P  +   +  +   L     S +        L     P LK L+
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 135 IGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFS----SLKNLSWLNLEQNNLGM 190
           I   +        +     L  LDL+ N   G+  +  +        L  L L    +  
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-- 213

Query: 191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG 250
                            L+ + L  N           +  S +    +    +   +P G
Sbjct: 214 -ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271

Query: 251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS 294
           +     L  L +  N+L    P    EL  +  LSL  N    S
Sbjct: 272 L--PAKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 22/182 (12%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
             L  L +++        E++     L TL +  N   G+                + ++
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--------------LISA 194

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L    P     L+ L   N G    SG+          L+ + L  N    +        
Sbjct: 195 L---CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
              L +L +        +P  L   + L +LDL+ N+L    S D   L  +  L+L+ N
Sbjct: 252 PSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGN 306

Query: 187 NL 188
             
Sbjct: 307 PF 308

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 62/271 (22%), Positives = 95/271 (35%), Gaps = 60/271 (22%)

Query: 143 SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFL 202
            IP++L    + + LDL+ N L+   S  F S   L  L+L +  +       ++   + 
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-----QTIEDGAY- 72

Query: 203 TNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALT 261
            + S L  + L  N            + S               +  G    L +L  L 
Sbjct: 73  QSLSHLSTLILTGNP-----------IQS---------------LALGAFSGLSSLQKLV 106

Query: 262 MEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSS--LGNLTKLVELPLSYNNLQGNI 319
                L       IG LK L++L++ +N +Q S        NLT L  L LS N +Q +I
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SI 164

Query: 320 PSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLV 379
                                  L   L  +  L LSLDLS N +N  +         L 
Sbjct: 165 YC-------------------TDLRV-LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 380 KLDISGNQFSGVIPVTLSACVSLEYLNISRN 410
           +L +  NQ   V         SL+ + +  N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 22/215 (10%)

Query: 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIP----SSLGNCQILRMFNAS 335
           + + L L  N L+     S  +  +L  L LS   +Q  I      SL +   L +    
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG-- 85

Query: 336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVI-P 393
            N +  +L     S  +    L      L  SL     G+LK L +L+++ N       P
Sbjct: 86  -NPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 394 VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNV----SSNNLSGLIPEFLKNLSF 449
              S   +LE+L++S N    I    L  L  +   N+    S N ++ + P   K +  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 450 MEFLDLSYNHFEGEVPKKGVF---SNKTKISLQGN 481
            E L L  N  +  VP  G+F   ++  KI L  N
Sbjct: 203 KE-LALDTNQLK-SVP-DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 15/192 (7%)

Query: 4   SRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
             +  L  L +S+ +++  I +    SL +L TL +  N +          LS+L+    
Sbjct: 49  FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRFS-----GMFPRSICNISSLEWIYLPFNRFSG 117
           +  +L       +G L+ L +LNV  N          F     N+++LE + L  N+   
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS----NLTNLEHLDLSSNKIQ- 162

Query: 118 SLPLDIAVNLPNLKALAIG---GNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSS 174
           S+       L  +  L +      N    I         L+ L L +NQLK      F  
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 175 LKNLSWLNLEQN 186
           L +L  + L  N
Sbjct: 223 LTSLQKIWLHTN 234

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 52/313 (16%), Positives = 112/313 (35%), Gaps = 56/313 (17%)

Query: 148 LSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSS 207
               +N   +    + +   V+   + L  ++ L+     +          +  +   ++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--------IEGVQYLNN 64

Query: 208 LKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKL 267
           L  + L  NQ        I +L+                    ++NL  +  L +  N L
Sbjct: 65  LIGLELKDNQ--------ITDLA-------------------PLKNLTKITELELSGNPL 97

Query: 268 HGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQ 327
                  I  L++++ L L +  +    P  L  L+ L  L L  N +  NI S L    
Sbjct: 98  --KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NI-SPLAGLT 151

Query: 328 ILRMFNASRNKLTGALPHQLLSITTLTL--SLDLSNNLLNGSLPLQVGNLKNLVKLDISG 385
            L+  +    +++      L  +  L+   +L   +N ++   PL   +L NL+++ +  
Sbjct: 152 NLQYLSIGNAQVS-----DLTPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKN 204

Query: 386 NQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLK 445
           NQ S V P  L+   +L  + ++            ++L       V   + + + P  + 
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPN--VVKGPSGAPIAPATIS 260

Query: 446 NLSFMEFLDLSYN 458
           +       +L++N
Sbjct: 261 DNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 16/205 (7%)

Query: 277 ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR 336
            L N  +++   +++      +  +L  +  L      +   I   +     L       
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKD 72

Query: 337 NKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTL 396
           N++T   P  L ++T +T  L+LS N L     +    L+++  LD++  Q + V P  L
Sbjct: 73  NQITDLAP--LKNLTKIT-ELELSGNPLKNVSAI--AGLQSIKTLDLTSTQITDVTP--L 125

Query: 397 SACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLS 456
           +   +L+ L +  N    I P  L+ L +++  ++ +  +S L P  L NLS +  L   
Sbjct: 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181

Query: 457 YNHFEGEVPKKGVFSNKTKISLQGN 481
            N    ++       N  ++ L+ N
Sbjct: 182 DNKIS-DISPLASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 63/322 (19%), Positives = 122/322 (37%), Gaps = 44/322 (13%)

Query: 78  LRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGG 137
           L N + +  G++  +        ++  +  +       +    +     L NL  L +  
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ---YLNNLIGLELKD 72

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNLGMGTANDL 196
           N     +   L N + +  L+L+ N LK   ++   + L+++  L+L    +        
Sbjct: 73  NQI-TDLAP-LKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD------ 121

Query: 197 DFVTFLTNCSSLKVISLYANQFGGELPHSIANLS--STMTDFRIGANQISGTIPPGIRNL 254
             VT L   S+L+V+ L  NQ       +I+ L+  + +    IG  Q+S      + NL
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQI-----TNISPLAGLTNLQYLSIGNAQVSDL--TPLANL 172

Query: 255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNN 314
             L  L  + NK+    P  +  L NL ++ L NN +  S  S L N + L  + L+   
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQT 228

Query: 315 LQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGN 374
           +         N   L + N  +           ++  T++ +   ++  L  +L   + N
Sbjct: 229 ITNQPVFYNNN---LVVPNVVKGPSG-----APIAPATISDNGTYASPNLTWNLTSFINN 280

Query: 375 L----KNLVKLDISGNQFSGVI 392
           +       V    +   FSG +
Sbjct: 281 VSYTFNQSVTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 53/277 (19%), Positives = 110/277 (39%), Gaps = 36/277 (12%)

Query: 53  NLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPF 112
            L+         +++      T   L  +  L+      + +    +  +++L  + L  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 113 NRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDF 172
           N+ +   PL    NL  +  L + GN       ++++   +++ LDLTS Q+        
Sbjct: 73  NQITDLAPLK---NLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD--VTPL 125

Query: 173 SSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLS-- 230
           + L NL  L L+ N +          ++ L   ++L+ +S+   Q        +  L+  
Sbjct: 126 AGLSNLQVLYLDLNQITN--------ISPLAGLTNLQYLSIGNAQV-----SDLTPLANL 172

Query: 231 STMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNS 290
           S +T  +   N+IS  I P + +L NLI + ++ N++    P  +    NL  ++L N +
Sbjct: 173 SKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228

Query: 291 LQGSIPSSLGNLTKLVELPLSYNNLQGNI--PSSLGN 325
           +         NL     +P       G    P+++ +
Sbjct: 229 ITNQPVFYNNNLV----VPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 51/315 (16%), Positives = 108/315 (34%), Gaps = 54/315 (17%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
                +N I++   K+ +          L  + TL+     +T    + V  L+ L    
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLE 69

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           +  N +       L  L  + +L +  N    +    I  + S++ + L   + +   PL
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPL 125

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSW 180
                L NL+ L +  N    +I   L+  +NL+ L + + Q+     +   ++L  L+ 
Sbjct: 126 A---GLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS---DLTPLANLSKLTT 177

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
           L  + N +          ++ L +  +L  + L  NQ        I+++S          
Sbjct: 178 LKADDNKISD--------ISPLASLPNLIEVHLKNNQ--------ISDVS---------- 211

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
                     + N  NL  +T+    +  T          +    +   S     P+++ 
Sbjct: 212 ---------PLANTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

Query: 301 NLTKLVELPLSYNNL 315
           +        L++N  
Sbjct: 261 DNGTYASPNLTWNLT 275

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 4e-18
 Identities = 59/354 (16%), Positives = 124/354 (35%), Gaps = 61/354 (17%)

Query: 148 LSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSS 207
               +     +L    +   V+   + L ++  +    +++       +  + +L N   
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDI-----KSVQGIQYLPN--- 66

Query: 208 LKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKL 267
           +  + L  N+        + ++                     + NL NL  L ++ NK+
Sbjct: 67  VTKLFLNGNK--------LTDIK-------------------PLTNLKNLGWLFLDENKI 99

Query: 268 HGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQ 327
                  + +LK L+ LSL +N +   I + L +L +L  L L  N +     + L    
Sbjct: 100 KDLSS--LKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLT 153

Query: 328 ILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ 387
            L   +   N+++  +P  L  +T L  +L LS N ++    L    LKNL  L++   +
Sbjct: 154 KLDTLSLEDNQISDIVP--LAGLTKLQ-NLYLSKNHISDLRALA--GLKNLDVLELFSQE 208

Query: 388 FSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447
                    S  V    +  +         +S        + +    N+   +PEF   +
Sbjct: 209 CLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS-------DDGDYEKPNVKWHLPEFTNEV 261

Query: 448 SFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGS 501
           SF+ +  ++          K  F  +    L+    +   +D   + +    G+
Sbjct: 262 SFIFYQPVTIG------KAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGT 309

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.0 bits (207), Expect = 4e-17
 Identities = 52/280 (18%), Positives = 97/280 (34%), Gaps = 28/280 (10%)

Query: 78  LRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGG 137
               +  N+ +   +         ++S++ I    +       +     LPN+  L + G
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFLNG 74

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNLGMGTANDL 196
           N     I   L+N  NL  L L  N++K    +     LK L  L+LE N +        
Sbjct: 75  NKL-TDIKP-LTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISD------ 123

Query: 197 DFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVN 256
             +  L +   L+ + L  N+        ++ L+  +    +  NQIS  I P +  L  
Sbjct: 124 --INGLVHLPQLESLYLGNNKI--TDITVLSRLTK-LDTLSLEDNQIS-DIVP-LAGLTK 176

Query: 257 LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ 316
           L  L +  N +  +    +  LKNL  L L++        +   NL     +  +  +L 
Sbjct: 177 LQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 317 GNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356
              P  + +       N   +          +    +T+ 
Sbjct: 235 --TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.7 bits (201), Expect = 2e-16
 Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 25/230 (10%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
               ++  I+  + K  +   +      L ++  +  + + +   +   +  L  +   +
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 71

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           + GN L   I   L  L+NL  L + EN+   +    + ++  L+ + L  N  S    L
Sbjct: 72  LNGNKL-TDI-KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDINGL 127

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSW 180
               +LP L++L +G N    +    LS  + L+ L L  NQ+     I   + L  L  
Sbjct: 128 V---HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQN 179

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLS 230
           L L +N++     +DL     L    +L V+ L++ +   +  +  +NL 
Sbjct: 180 LYLSKNHI-----SDLR---ALAGLKNLDVLELFSQECLNKPINHQSNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.3 bits (187), Expect = 1e-14
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 15/178 (8%)

Query: 281 LQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT 340
           + +    +  ++  I        + ++  L   ++   +         +    A+ + + 
Sbjct: 1   MGETITVSTPIK-QI-FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 341 GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV 400
                Q L    +T  L L+ N L    PL   NLKNL  L +  N+   +    L    
Sbjct: 57  SVQGIQYL--PNVT-KLFLNGNKLTDIKPL--TNLKNLGWLFLDENKIKDLSS--LKDLK 109

Query: 401 SLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458
            L+ L++  N    I    L  L  ++   + +N ++ +    L  L+ ++ L L  N
Sbjct: 110 KLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.7 bits (157), Expect = 5e-11
 Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 13/187 (6%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
            +    N+ +L ++ NKL   I + + +L NL  L +D N +   L     +L  LK   
Sbjct: 60  GIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-DLSSL-KDLKKLKSLS 115

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           +  N +       L  L  L  L +G N+ + +    +  ++ L+ + L  N+ S  +PL
Sbjct: 116 LEHNGI--SDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL 171

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
                L  L+ L +  N+   S   +L+   NL++L+L S +   K     S+L   + +
Sbjct: 172 A---GLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 182 NLEQNNL 188
                +L
Sbjct: 227 KNTDGSL 233

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 13/200 (6%)

Query: 240 ANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL 299
           A+Q +  IP          A    +     T   T  ++ +L  ++L N ++   + + +
Sbjct: 10  ASQDNVNIP-----DSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DL-TGI 62

Query: 300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDL 359
                + +L ++  +      + +     L         +T      L  +T+LT  LD+
Sbjct: 63  EYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT-LLDI 119

Query: 360 SNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLS 419
           S++  + S+  ++  L  +  +D+S N     I   L     L+ LNI  +  H      
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG-- 176

Query: 420 LSSLKSIKEFNVSSNNLSGL 439
           +     + +    S  + G 
Sbjct: 177 IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 28/190 (14%), Positives = 65/190 (34%), Gaps = 13/190 (6%)

Query: 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQIL 329
            IPD+    K      L  +S       +   +  L  + L+  N+  ++ + +     +
Sbjct: 16  NIPDS--TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNI 68

Query: 330 RMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS 389
           +    +    T   P  +  ++ L   L +    +       +  L +L  LDIS +   
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLE-RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 390 GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF 449
             I   ++    +  +++S N     I   L +L  +K  N+  + +       +++   
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 450 MEFLDLSYNH 459
           +  L      
Sbjct: 183 LNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 238 IGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS 297
           +G +  +      + +L  +    + +  L G     I    N++ L++ N     +  +
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHA--TNYN 82

Query: 298 SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSL 357
            +  L+ L  L +   ++  +   +L     L + + S +    ++  ++ ++  +  S+
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN-SI 141

Query: 358 DLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN 410
           DLS N     +   +  L  L  L+I  +         +     L  L     
Sbjct: 142 DLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 63/240 (26%)

Query: 152 SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVI 211
           S  +             +I  + + +L+++ L   N+      DL  + +  N   +K +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV-----TDLTGIEYAHN---IKDL 71

Query: 212 SLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTI 271
           ++              N +                    I  L NL  L +    +    
Sbjct: 72  TINNIH--------ATNYN-------------------PISGLSNLERLRIMGKDVTSDK 104

Query: 272 PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRM 331
              +  L +L  L + +++   SI + +  L K+  + LSYN    +I   L     L+ 
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKS 163

Query: 332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391
            N   + +                  D             + +   L +L        G 
Sbjct: 164 LNIQFDGVH-----------------DYRG----------IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 24/172 (13%), Positives = 62/172 (36%), Gaps = 15/172 (8%)

Query: 74  TLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKAL 133
           T   + +L  + +     + +    I    +++ + +     +   P+     L NL+ L
Sbjct: 39  TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPIS---GLSNLERL 93

Query: 134 AIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTA 193
            I G +       +LS  ++L +LD++ +     +    ++L  ++ ++L  N       
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA----- 148

Query: 194 NDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245
             +  +  L     LK +++  +         I +    +      +  I G
Sbjct: 149 --ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPK-LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
            +    N+ +L ++           I  L NL+ L I    +T      +  L++L +  
Sbjct: 61  GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           I  ++    I T +  L  +  +++  N         +  +  L+ + + F+       +
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDYRGI 177

Query: 122 DIAVNLPNLKALAIGGNN 139
           +   + P L  L      
Sbjct: 178 E---DFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 15/121 (12%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 365 NGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK 424
           + +  +    + +L  + ++    + +    +    +++ L I+        P+S   L 
Sbjct: 33  SSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPIS--GLS 88

Query: 425 SIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVK 483
           +++   +   +++      L  L+ +  LD+S++  +  +  K         I L  N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 484 L 484
           +
Sbjct: 149 I 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
            +S  SNL  LR+    +       +  L +L  L I  +     +   +  L  +    
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSG 117
           +  N     I   L  L  L  LN+  +       R I +   L  +Y       G
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.5 bits (189), Expect = 7e-15
 Identities = 71/412 (17%), Positives = 130/412 (31%), Gaps = 56/412 (13%)

Query: 103 SSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNF----FGSIPNSLSNASNLEILD 158
             ++ + +     S +   ++   L   + + +            I ++L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 159 LTSNQLKGK-VSIDFSSLKN----LSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISL 213
           L SN+L    V      L+     +  L+L+   L       L   + L    +L+ + L
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL--SSTLRTLPTLQELHL 120

Query: 214 YANQFGGE----LPHSIANLSSTMTDFRIGANQISGT----IPPGIRNLVNLIALTMEIN 265
             N  G      L   + +    +   ++    +S      +   +R   +   LT+  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 266 KLHGTIPDTIGE-LK----NLQQLSLYNNSLQ----GSIPSSLGNLTKLVELPLSYNNLQ 316
            ++      + + LK     L+ L L +  +       +   + +   L EL L  N L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 317 GN-----IPSSLGNCQILRMFNASRNKLT----GALPHQLLSITTLTLSLDLSNNLL--N 365
                   P  L     LR        +T    G L   L +  +L   L L+ N L   
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK-ELSLAGNELGDE 299

Query: 366 GSLPLQVG---NLKNLVKLDISGNQFSGV----IPVTLSACVSLEYLNISRNFFH--GII 416
           G+  L          L  L +    F+          L+    L  L IS N     G+ 
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 417 PLS---LSSLKSIKEFNVSSNNLS----GLIPEFLKNLSFMEFLDLSYNHFE 461
            L          ++   ++  ++S      +   L     +  LDLS N   
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 70/410 (17%), Positives = 122/410 (29%), Gaps = 58/410 (14%)

Query: 57  LKVFYIIGNSLGGK-IPTTLGLLRNLVDLNVGENRFSGMFPRSICNI----SSLEWIYLP 111
           ++   I    L        L LL+    + + +   +    + I +      +L  + L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 112 FNRFSGSLPLDIAVNL----PNLKALAIGGNNF----FGSIPNSLSNASNLEILDLTSNQ 163
            N         +   L      ++ L++          G + ++L     L+ L L+ N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 164 LKGKVSIDFSSL-----KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF 218
           L                  L  L LE  +L   +   L  V  L      K +++  N  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV--LRAKPDFKELTVSNNDI 182

Query: 219 GGE----LPHSIANLSSTMTDFRIGANQIS----GTIPPGIRNLVNLIALTMEINKLHGT 270
                  L   + +    +   ++ +  ++      +   + +  +L  L +  NKL   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 271 -----IPDTIGELKNLQQLSLYNNSLQ----GSIPSSLGNLTKLVELPLSYNNLQGNIPS 321
                 P  +     L+ L ++   +     G +   L     L EL L+ N L      
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 322 SLG------NCQILRMFNASRNKLTG----ALPHQLLSITTLTLSLDLSNNLL--NGSLP 369
            L        CQ L          T          L     L   L +SNN L   G   
Sbjct: 303 LLCETLLEPGCQ-LESLWVKSCSFTAACCSHFSSVLAQNRFLL-ELQISNNRLEDAGVRE 360

Query: 370 LQVG---NLKNLVKLDISGNQFS--GVIPVT--LSACVSLEYLNISRNFF 412
           L  G       L  L ++    S      +   L A  SL  L++S N  
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 69/374 (18%), Positives = 116/374 (31%), Gaps = 60/374 (16%)

Query: 129 NLKALAIGGNNF-FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSL----KNLSWLNL 183
           ++++L I             L      +++ L    L      D SS       L+ LNL
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 184 EQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANL---SSTMTDFRIGA 240
             N LG    + +      T    ++ +SL      G     +++      T+ +  +  
Sbjct: 64  RSNELGDVGVHCV-LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ----GSIP 296
           N +      G++ L   +                      L++L L   SL       + 
Sbjct: 123 NLLG---DAGLQLLCEGLLDPQ----------------CRLEKLQLEYCSLSAASCEPLA 163

Query: 297 SSLGNLTKLVELPLSYNNLQG----NIPSSLGNCQI-LRMFNASRNKLT----GALPHQL 347
           S L       EL +S N++       +   L +    L         +T      L   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 348 LSITTLTLSLDLSNNLL--NGSLPLQVGNLK---NLVKLDISGNQFS--GVIPVT--LSA 398
            S  +L   L L +N L   G   L  G L     L  L I     +  G   +   L A
Sbjct: 224 ASKASLR-ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 399 CVSLEYLNISRNFFH--GIIPLS---LSSLKSIKEFNVSSNNLSGL----IPEFLKNLSF 449
             SL+ L+++ N     G   L    L     ++   V S + +          L    F
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 450 MEFLDLSYNHFEGE 463
           +  L +S N  E  
Sbjct: 343 LLELQISNNRLEDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 81/451 (17%), Positives = 142/451 (31%), Gaps = 88/451 (19%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
           L     L EL +  N+L       +   L   +                     ++   +
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPS-------------------CKIQKLSL 92

Query: 63  IGNSLGGK----IPTTLGLLRNLVDLNVGENRFSGMFPRSICNI-----SSLEWIYLPFN 113
               L G     + +TL  L  L +L++ +N       + +C         LE + L + 
Sbjct: 93  QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152

Query: 114 RFSGSLPLDIA---VNLPNLKALAIGGNNF----FGSIPNSL-SNASNLEILDLTSNQLK 165
             S +    +A      P+ K L +  N+        +   L  +   LE L L S  + 
Sbjct: 153 SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212

Query: 166 GKVSIDFSSL----KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGE 221
                D   +     +L  L L  N LG     +L     L   S L+ + ++      +
Sbjct: 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL-CPGLLHPSSRLRTLWIWECGITAK 271

Query: 222 LPHSIANL---SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEL 278
               +  +     ++ +  +  N++      G R L   +                    
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNELGDE---GARLLCETLLEP----------------G 312

Query: 279 KNLQQLSLYNNSLQG----SIPSSLGNLTKLVELPLSYNNLQGNIPSSLG------NCQI 328
             L+ L + + S          S L     L+EL +S N L+      L           
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV- 371

Query: 329 LRMFNASRNKLT----GALPHQLLSITTLTLSLDLSNNLLN--GSLPLQVG---NLKNLV 379
           LR+   +   ++     +L   LL+  +L   LDLSNN L   G L L          L 
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLR-ELDLSNNCLGDAGILQLVESVRQPGCLLE 430

Query: 380 KLDISGNQFSGVIPVTLSACV----SLEYLN 406
           +L +    +S  +   L A      SL  ++
Sbjct: 431 QLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 9e-15
 Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 20/204 (9%)

Query: 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNL 315
             I +   I ++               + +L   S+      +   L  + ++  + +++
Sbjct: 6   ETITVPTPIKQIFS-----DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI 58

Query: 316 QGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNL 375
           + ++   +     +     + NKLT   P  L ++  L   L L  N +     L+  +L
Sbjct: 59  K-SV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLG-WLFLDENKVKDLSSLK--DL 111

Query: 376 KNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN 435
           K L  L +  N  S +    L     LE L +  N    I  LS   L  +   ++  N 
Sbjct: 112 KKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQ 167

Query: 436 LSGLIPEFLKNLSFMEFLDLSYNH 459
           +S +    L  L+ ++ L LS NH
Sbjct: 168 ISDI--VPLAGLTKLQNLYLSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 46/223 (20%), Positives = 84/223 (37%), Gaps = 21/223 (9%)

Query: 238 IGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS 297
           +    ++  +      L ++  +    + +       I  L N+ +L L  N L   I  
Sbjct: 31  LKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLT-DI-K 84

Query: 298 SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTL-- 355
            L NL  L  L L  N ++ ++ SSL + + L+  +   N ++      +  +  L    
Sbjct: 85  PLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-----DINGLVHLPQLE 137

Query: 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI 415
           SL L NN +     L    L  L  L +  NQ S ++P  L+    L+ L +S+N    +
Sbjct: 138 SLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193

Query: 416 IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN 458
             L+   LK++    + S            NL     +  +  
Sbjct: 194 RALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 47/311 (15%), Positives = 104/311 (33%), Gaps = 74/311 (23%)

Query: 148 LSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSS 207
               +     +L    +   V+   + L ++  +    +++       +  + +L N   
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDI-----KSVQGIQYLPN--- 69

Query: 208 LKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKL 267
           +  + L  N+        + ++                     + NL NL  L ++ NK+
Sbjct: 70  VTKLFLNGNK--------LTDIK-------------------PLANLKNLGWLFLDENKV 102

Query: 268 HGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQ 327
                 ++ +LK L+ LSL +N +  S  + L +L +L  L L  N +     + L    
Sbjct: 103 --KDLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLSRLT 156

Query: 328 ILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ 387
            L   +   N+++                 D+            +  L  L  L +S N 
Sbjct: 157 KLDTLSLEDNQIS-----------------DIVP----------LAGLTKLQNLYLSKNH 189

Query: 388 FSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL 447
            S +    L+   +L+ L +             S+L        +  +L  + PE + + 
Sbjct: 190 ISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDD 245

Query: 448 SFMEFLDLSYN 458
              E  ++ ++
Sbjct: 246 GDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 51/241 (21%), Positives = 88/241 (36%), Gaps = 30/241 (12%)

Query: 78  LRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGG 137
               +  N+ +   +         ++S++ I    +       +     LPN+  L + G
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFLNG 77

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNLGMGTANDL 196
           N     I   L+N  NL  L L  N++K    +     LK L  L+LE N +        
Sbjct: 78  NKL-TDIKP-LANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISD------ 126

Query: 197 DFVTFLTNCSSLKVISLYANQFGGELPHSIANLS--STMTDFRIGANQISGTIPPGIRNL 254
             +  L +   L+ + L  N+        I  LS  + +    +  NQIS  I P +  L
Sbjct: 127 --INGLVHLPQLESLYLGNNKI-----TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGL 177

Query: 255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNN 314
             L  L +  N +  +    +  LKNL  L L++        +   NL     +  +  +
Sbjct: 178 TKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 315 L 315
           L
Sbjct: 236 L 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 25/231 (10%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           +   ++  I+  + K  +   +      L ++  +  + + +   +      L  +   +
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI-QYLPNVTKLF 74

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           + GN L       L  L+NL  L + EN+   +    + ++  L+ + L  N  S    L
Sbjct: 75  LNGNKL--TDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDINGL 130

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSW 180
               +LP L++L +G N    +    LS  + L+ L L  NQ+     I   + L  L  
Sbjct: 131 V---HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQN 182

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSS 231
           L L +N++          +  L    +L V+ L++ +   +  +  +NL  
Sbjct: 183 LYLSKNHISD--------LRALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 13/187 (6%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
            +    N+ +L ++ NKL   I + + +L NL  L +D N +       + +L  LK   
Sbjct: 63  GIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLS 118

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
           +  N +       L  L  L  L +G N+ + +    +  ++ L+ + L  N+ S  +PL
Sbjct: 119 LEHNGI--SDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL 174

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL 181
                L  L+ L +  N+   S   +L+   NL++L+L S +   K     S+L   + +
Sbjct: 175 A---GLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 182 NLEQNNL 188
                +L
Sbjct: 230 KNTDGSL 236

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 21/205 (10%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTI-GELKNLQQL 284
           +N+ +      + +N++S ++P      L  L  L +  NKL  T+P  I  ELKNL+ L
Sbjct: 33  SNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90

Query: 285 SLYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQ---GNIPSSLGNCQILRMFNASRNKLT 340
            + +N LQ ++P  +   L  L EL L  N L+     +  SL     L +     N+L 
Sbjct: 91  WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY---NELQ 146

Query: 341 GALPHQLL-SITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLSA 398
            +LP  +   +T+L   L L NN L   +P      L  L  L +  NQ   V      +
Sbjct: 147 -SLPKGVFDKLTSLK-ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 399 CVSLEYLNISRNFF----HGIIPLS 419
              L+ L +  N +    +GII ++
Sbjct: 204 LEKLKMLQLQENPWDCTCNGIIYMA 228

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 17/190 (8%)

Query: 129 NLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID---FSSLKNLSWLNLEQ 185
           + K L +  N        +    + L +L L  N+L+   ++    F  LKNL  L +  
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTD 94

Query: 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSI-ANLSSTMTDFRIGANQIS 244
           N L    A  +     L N   L  + L  NQ    LP  +  +L+  +T   +G N++ 
Sbjct: 95  NKL---QALPIGVFDQLVN---LAELRLDRNQLK-SLPPRVFDSLTK-LTYLSLGYNELQ 146

Query: 245 GTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLT 303
            ++P G+   L +L  L +  N+L         +L  L+ L L NN L+     +  +L 
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

Query: 304 KLVELPLSYN 313
           KL  L L  N
Sbjct: 206 KLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 9/183 (4%)

Query: 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ---GNIPSSLGNCQILRMFNASR 336
           + ++L L +N L      +   LTKL  L L+ N LQ     I   L N + L + +   
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD--- 94

Query: 337 NKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVT 395
           NKL  ALP  +         L L  N L  SLP +V  +L  L  L +  N+   +    
Sbjct: 95  NKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152

Query: 396 LSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDL 455
                SL+ L +  N    +   +   L  +K   + +N L  +      +L  ++ L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 456 SYN 458
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 15/163 (9%)

Query: 7   SNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFV-GNLSALKVFYIIG 64
           + L  L ++ NKL+  +P  I   L NL+TL +  N L   LP  V   L  L    +  
Sbjct: 61  TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDR 118

Query: 65  NSLGGKIPTTL-GLLRNLVDLNVGENRF----SGMFPRSICNISSLEWIYLPFNRFSGSL 119
           N L   +P  +   L  L  L++G N       G+F +    ++SL+ + L  N+    +
Sbjct: 119 NQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK----LTSLKELRLYNNQLK-RV 172

Query: 120 PLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSN 162
           P      L  LK L +  N        +  +   L++L L  N
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 50/230 (21%), Positives = 74/230 (32%), Gaps = 48/230 (20%)

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLD 197
                ++P  L    +  IL L+ N L             L+ LNL++  L     +   
Sbjct: 19  KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-- 74

Query: 198 FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNL 257
                     L  + L  NQ           L S               +P   + L  L
Sbjct: 75  ------TLPVLGTLDLSHNQ-----------LQS---------------LPLLGQTLPAL 102

Query: 258 IALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQ 316
             L +  N+L       +  L  LQ+L L  N L+ ++P  L     KL +L L+ NNL 
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161

Query: 317 GNIPS----SLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNN 362
             +P+     L N   L +     N L   +P        L     L  N
Sbjct: 162 -ELPAGLLNGLENLDTLLL---QENSLY-TIPKGFFGSHLLP-FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 45/203 (22%)

Query: 118 SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLK 176
           +LP D+     +   L +  N  +     +L   + L  L+L   +L     +    +L 
Sbjct: 24  ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLP 77

Query: 177 NLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF 236
            L  L+L  N L                                 LP     L +  T  
Sbjct: 78  VLGTLDLSHNQL-------------------------------QSLPLLGQTLPAL-TVL 105

Query: 237 RIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTI-GELKNLQQLSLYNNSLQGS 294
            +  N+++ ++P G  R L  L  L ++ N+L  T+P  +      L++LSL NN+L   
Sbjct: 106 DVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-E 162

Query: 295 IPSSL-GNLTKLVELPLSYNNLQ 316
           +P+ L   L  L  L L  N+L 
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 11/204 (5%)

Query: 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKL 339
           +  +++    +L  ++P  L        L LS N L     ++L     L   N  R +L
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 340 TGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSAC 399
           T       L    L  +LDLS+N L  SLPL    L  L  LD+S N+ + +    L   
Sbjct: 68  TKLQVDGTL--PVLG-TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 400 VSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNH 459
             L+ L +  N    + P  L+    +++ ++++NNL+ L    L  L  ++ L L  N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 460 FEGEVPKKGVFSNK--TKISLQGN 481
               +P KG F +       L GN
Sbjct: 184 LYT-IP-KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
            +   L +S+N L       +     L  L +D   LT +L    G L  L    +  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ 88

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L   +P     L  L  L+V  NR + +   ++  +  L+ +YL  N    +LP  +   
Sbjct: 89  L-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 127 LPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
            P L+ L++  NN    +P   L+   NL+ L L  N L   +   F     L +  L  
Sbjct: 147 TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 186 N 186
           N
Sbjct: 205 N 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 16/234 (6%)

Query: 205 CSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTME 263
           C   +   +            I +L  +    ++    +  TIP     NL N+  + + 
Sbjct: 10  CHQEEDFRVTCKDI-----QRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 264 INKLHGTIP-DTIGELKNLQQLSLYNNSLQGSIPSS-LGNLTKLVELPLSYNNLQGNIP- 320
           I+     +   +   L  +  + + N      I    L  L  L  L +    L+   P 
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD 122

Query: 321 -SSLGNCQILRMFNASRNKLTGALPHQLLS-ITTLTLSLDLSNNLLNGSLPLQVGNLKNL 378
            + + +  I  +   + N    ++P      +   TL+L L NN    S+     N   L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181

Query: 379 VKLDISGNQFSGVIPVTL--SACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFN 430
             + ++ N++  VI              L++S+     +    L  LK +   N
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 34/237 (14%)

Query: 76  GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAI 135
            L  +   L + E     +   +  N+ ++  IY+  +     L      NL  +  + I
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 136 GGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTAND 195
                   I                              L  L +L +    L       
Sbjct: 88  RNTRNLTYIDPDA-----------------------LKELPLLKFLGIFNTGL-----KM 119

Query: 196 LDFVTFLTNCSSLKVISLYANQFGGELP-HSIANLSSTMTDFRIGANQISGTIPPGIRNL 254
              +T + +     ++ +  N +   +P ++   L +     ++  N  + ++     N 
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178

Query: 255 VNLIALTMEINKLHGTIPDTI--GELKNLQQLSLYNNSLQGSIPS-SLGNLTKLVEL 308
             L A+ +  NK    I      G       L +   S+  ++PS  L +L +L+  
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIAR 234

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.9 bits (173), Expect = 6e-13
 Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 17/218 (7%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
           + +    L    +S  K    +  E+ S   LQ L  +  +    +   +  L  L   Y
Sbjct: 344 DSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL--Y 400

Query: 62  IIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPL 121
                        +  +R     ++                + +  ++L     +    L
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN-SVLKMEYADVRVLHLAHKDLTVLCHL 459

Query: 122 DIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSW 180
           +    L  +  L +  N    ++P +L+    LE+L  + N L+   ++D  ++L  L  
Sbjct: 460 E---QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQE 512

Query: 181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF 218
           L L  N L          +  L +C  L +++L  N  
Sbjct: 513 LLLCNNRL-----QQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.8 bits (157), Expect = 5e-11
 Identities = 41/205 (20%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
            + S  +   + +   L  L  E      TI   I  ++ L  L     +LQ        
Sbjct: 358 VEKSTVLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETLQ-----YFS 409

Query: 301 NLTKLVELPLSY-----NNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTL 355
            L  +  +  +Y     +               +R+ + +   LT      L  +  L L
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-----VLCHLEQLLL 464

Query: 356 --SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH 413
              LDLS+N L  +LP  +  L+ L  L  S N    V    ++    L+ L +  N   
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ 521

Query: 414 GI-IPLSLSSLKSIKEFNVSSNNLS 437
                  L S   +   N+  N+L 
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 8e-11
 Identities = 35/237 (14%), Positives = 77/237 (32%), Gaps = 19/237 (8%)

Query: 106 EWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLK 165
                   +         +     L    +        + + L +   L+ L+  +    
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL 385

Query: 166 GKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHS 225
             + +   +L  L +             + L  V  +       + S +  +        
Sbjct: 386 LTIILLMRALDPLLYEKETLQYF-----STLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 226 IANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
                + +    +    +  T+   +  L+ +  L +  N+L   +P  +  L+ L+ L 
Sbjct: 441 -----ADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ 492

Query: 286 LYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS--SLGNCQILRMFNASRNKLT 340
             +N+L+ ++   + NL +L EL L  N LQ    +   L +C  L + N   N L 
Sbjct: 493 ASDNALE-NVD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 3e-10
 Identities = 29/227 (12%), Positives = 71/227 (31%), Gaps = 29/227 (12%)

Query: 277 ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR 336
              + ++  L  +  +           +L    LS       + S L +C+ L+      
Sbjct: 324 GSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPEN 381

Query: 337 NKLTGALPHQLLSITTLTLSLDLSNNLLN--------------------GSLPLQVGNLK 376
                 +   + ++  L    +                               +      
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
           ++  L ++    + +    L   + + +L++S N    + P +L++L+ ++    S N L
Sbjct: 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNAL 498

Query: 437 SGLIPEFLKNLSFMEFLDLSYNHFEG--EVPKKGVFSNKTKISLQGN 481
             +    + NL  ++ L L  N  +    +           ++LQGN
Sbjct: 499 ENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 53/163 (32%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 155 EILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLY 214
           E LDL S  L       F  L  L+WLNL+ N L   +A   D +T L        + L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT------LGLA 91

Query: 215 ANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPD 273
            NQ    LP  + +  + +    +G NQ+  ++P G+   L  L  L +  N+L  +IP 
Sbjct: 92  NNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPA 148

Query: 274 TI-GELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELPLSYNN 314
               +L NLQ LSL  N LQ S+P  +   L KL  + L + N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTI-GELKNLQQLS 285
           + + +      + +  ++       R L  L  L ++ N+L  T+   +  +L  L  L 
Sbjct: 31  SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLG 89

Query: 286 LYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIPS----SLGNCQILRMFNASRNKLT 340
           L NN L  S+P  +  +LT+L +L L  N L+  +PS     L   + LR+     N+L 
Sbjct: 90  LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNT---NQLQ 144

Query: 341 GALPHQLL-SITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF 388
            ++P      +T L  +L LS N L          L  L  + + GNQF
Sbjct: 145 -SIPAGAFDKLTNLQ-TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 9/157 (5%)

Query: 282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ---GNIPSSLGNCQILRMFNASRNK 338
           ++L L +  L     ++   LTKL  L L YN LQ     +   L     L +   + N+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL---ANNQ 94

Query: 339 LTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIPVTLS 397
           L  +LP  +    T    L L  N L  SLP  V   L  L +L ++ NQ   +      
Sbjct: 95  LA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 398 ACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN 434
              +L+ L++S N    +   +   L  ++   +  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 3/154 (1%)

Query: 34  QTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSG 93
           + L +    L          L+ L    +  N L          L  L  L +  N+ + 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 94  MFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNA-S 152
           +      +++ L+ +YL  N+   SLP  +   L  LK L +   N   SIP    +  +
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLT 155

Query: 153 NLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
           NL+ L L++NQL+      F  L  L  + L  N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 17/139 (12%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
            NL  T+T+ R+  N I   IPPG       L  + +  N++    PD    L++L  L 
Sbjct: 28  TNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86

Query: 286 LYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIP----SSLGNCQILRMFNASRNKLT 340
           LY N +   +P SL   L  L  L L+ N +   +       L N  +L +++   NKL 
Sbjct: 87  LYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD---NKLQ 141

Query: 341 GALPH----QLLSITTLTL 355
             +       L +I T+ L
Sbjct: 142 -TIAKGTFSPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 13/137 (9%)

Query: 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS----SLGNCQILRMFNAS 335
            + ++ L  N+++   P +     KL  + LS N +   +       L +   L +    
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVL---Y 88

Query: 336 RNKLTGALPHQLL-SITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIP 393
            NK+T  LP  L   + +L L L L+ N +N  L +    +L NL  L +  N+   +  
Sbjct: 89  GNKIT-ELPKSLFEGLFSLQL-LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 394 VTLSACVSLEYLNISRN 410
            T S   +++ +++++N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 40/175 (22%)

Query: 143 SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTF- 201
            IP +L     +  + L  N +K      FS  K L  ++L  N +     ++L    F 
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-----SELAPDAFQ 77

Query: 202 -LTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIA 259
            L +   L  + LY N+           ++                +P  +   L +L  
Sbjct: 78  GLRS---LNSLVLYGNK-----------ITE---------------LPKSLFEGLFSLQL 108

Query: 260 LTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNN 314
           L +  NK++    D   +L NL  LSLY+N LQ     +   L  +  + L   N
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 32  NLQTLAIDFNYLTGQLPDFV-GNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENR 90
            +  + ++ N +   +P         L+   +  N +    P     LR+L  L +  N+
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 91  FSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPN-SLS 149
            + +       + SL+ + L  N+ +  L +D   +L NL  L++  +N   +I   + S
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLY-DNKLQTIAKGTFS 149

Query: 150 NASNLEILDLTSN 162
               ++ + L  N
Sbjct: 150 PLRAIQTMHLAQN 162

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 24/212 (11%)

Query: 101 NIS-SLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDL 159
           +         L     +        +N  +        N+   S+   +    N+  L L
Sbjct: 16  DAFAETIKANLKKKSVT-DAVTQNELNSIDQIIA---NNSDIKSVQ-GIQYLPNVRYLAL 70

Query: 160 TSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG 219
             N+L   +S     L NL++L L  N L        D +T L        + L  NQ  
Sbjct: 71  GGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE------LVLVENQLQ 122

Query: 220 GELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTI-GE 277
             LP  + +  + +T   +  NQ+  ++P G+   L NL  L +  N+L  ++P+ +  +
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK 179

Query: 278 LKNLQQLSLYNNSLQGSIPS----SLGNLTKL 305
           L  L+ L LY N L+ S+P      L +L  +
Sbjct: 180 LTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYI 210

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 36/212 (16%)

Query: 157 LDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN 216
            +L    +   V+   + L ++  +    +++             L N   ++ ++L  N
Sbjct: 24  ANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY-----LPN---VRYLALGGN 73

Query: 217 QFGGELP--HSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPD 273
           +   ++     + NL    T   +  NQ+  ++P G+   L NL  L +  N+L  ++PD
Sbjct: 74  KLH-DISALKELTNL----TYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPD 126

Query: 274 TI-GELKNLQQLSLYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIPS----SLGNCQ 327
            +  +L NL  L+L +N LQ S+P  +   LT L EL LSYN LQ ++P      L   +
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLK 184

Query: 328 ILRMFNASRNKLTGALPH----QLLSITTLTL 355
            LR++    N+L  ++P     +L S+  + L
Sbjct: 185 DLRLYQ---NQLK-SVPDGVFDRLTSLQYIWL 212

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 50/308 (16%), Positives = 107/308 (34%), Gaps = 65/308 (21%)

Query: 126 NLPNLKALAIGGNNF----FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLK----- 176
              ++K + + GN         +  ++++  +LEI + +             +L+     
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 177 -----NLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGE---------- 221
                 L  + L  N  G      L  + FL+  + L+ + L+ N  G +          
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPL--IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 222 --LPHSIANLSSTMTDFRIGANQISG----TIPPGIRNLVNLIALTMEINKLH-----GT 270
               +  A  +  +     G N++            ++   L  + M  N +        
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 271 IPDTIGELKNLQQLSLYNNSL--QG--SIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNC 326
           + + +   + L+ L L +N+    G  ++  +L +   L EL L+   L     S+ G  
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-----SARGAA 262

Query: 327 QILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN--GSLPLQ---VGNLKNLVKL 381
            ++  F+   N               L  +L L  N +       L+      + +L+ L
Sbjct: 263 AVVDAFSKLEN-------------IGLQ-TLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 382 DISGNQFS 389
           +++GN+FS
Sbjct: 309 ELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 54/334 (16%), Positives = 99/334 (29%), Gaps = 75/334 (22%)

Query: 178 LSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFR 237
           +   +L+ + +       +     L    S+K I L  N  G E    ++   ++  D  
Sbjct: 6   IEGKSLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 238 ------IGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSL 291
                 I   ++   IP  +R L+  +                  +   L  + L +N+ 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALL-----------------KCPKLHTVRLSDNAF 106

Query: 292 QG----SIPSSLGNLTKLVELPLSYNNL-------------QGNIPSSLGNCQILRMFNA 334
                  +   L   T L  L L  N L             +  +     N   LR    
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166

Query: 335 SRNKLTG----ALPHQLLSITTLTLSLDLSNN---------LLNGSLPLQVGNLKNLVKL 381
            RN+L             S   L  ++ +  N         LL   L       + L  L
Sbjct: 167 GRNRLENGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLLEGL----AYCQELKVL 221

Query: 382 DISGNQFS--GVIPV--TLSACVSLEYLNISRNFF--HGIIP----LSLSSLKSIKEFNV 431
           D+  N F+  G   +   L +  +L  L ++       G        S      ++   +
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 432 SSNNLSG----LIPEFLK-NLSFMEFLDLSYNHF 460
             N +       +   +   +  + FL+L+ N F
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 241 NQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS-S 298
           N ++  I       + NL  L +  N LH        +L+ L+ L LYNN +   +   +
Sbjct: 74  NHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131

Query: 299 LGNLTKLVELPLSYNNLQGNIP----SSLGNCQILRMFNASRNKLTGALPHQLLSITTLT 354
             ++ +L +L LS N +    P            L + + S NKL       L  +    
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 355 -LSLDLSNN 362
              L L NN
Sbjct: 191 KNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 49/203 (24%)

Query: 126 NLP-NLKALAIGGNNFFGSIPN--SLSNASNLEILDLTSNQLKGKVSID---FSSLKNLS 179
           +LP     L +  NN    +    + +  +NL  L L+ N L     I    F  + NL 
Sbjct: 36  SLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLR 91

Query: 180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIG 239
           +L+L  N+L     + LD   F ++  +L+V+ LY N            +          
Sbjct: 92  YLDLSSNHL-----HTLDEFLF-SDLQALEVLLLYNNH-----------IVV-------- 126

Query: 240 ANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIG---ELKNLQQLSLYNNSLQGSI 295
                  +      ++  L  L +  N++     + I    +L  L  L L +N L+   
Sbjct: 127 -------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

Query: 296 PSSLGNLTKLVELPLSYNNLQGN 318
            + L  L   V+  L    L  N
Sbjct: 180 LTDLQKLPAWVKNGLY---LHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 9/145 (6%)

Query: 335 SRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV--GNLKNLVKLDISGNQFSGVI 392
           S+ +L   +P    S+ + T  LDLS+N L   L  +     L NL  L +S N  + + 
Sbjct: 26  SKQQLP-NVPQ---SLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 393 PVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEF 452
                   +L YL++S N  H +     S L++++   + +N++  +     ++++ ++ 
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140

Query: 453 LDLSYNHFEGEVPKKGVFSNKTKIS 477
           L LS N      P   +  +  K+ 
Sbjct: 141 LYLSQNQIS-RFP-VELIKDGNKLP 163

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 18/173 (10%)

Query: 318 NIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLK 376
           ++PS      +L +   S N L+        +  T   SL LS+N LN  +  +    + 
Sbjct: 36  SLPSYT---ALLDL---SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
           NL  LD+S N    +     S   +LE L +  N    +   +   +  +++  +S N +
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 437 SGLIPE---FLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTK-----ISLQGN 481
           S    E       L  +  LDLS N  + ++P               + L  N
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLK-KLP-LTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 12/172 (6%)

Query: 23  IPEEIGSLLNLQTLAIDFNYLTGQLPDFV-GNLSALKVFYIIGNSLGGKIPT-TLGLLRN 80
           +P+ + S      L +  N L+    ++    L+ L    +  N L   I +     + N
Sbjct: 33  VPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN 89

Query: 81  LVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNF 140
           L  L++  N    +      ++ +LE + L  N     +  +   ++  L+ L +  N  
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI 148

Query: 141 FGSIPN----SLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLE-QNN 187
               P       +    L +LDL+SN+LK     D   L       L   NN
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFV-GNLSALKVF 60
            +R +NL  L +S N L   I  E    + NL+ L +  N+L   L +F+  +L AL+V 
Sbjct: 60  PTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL 117

Query: 61  YIIGNSLGGKIPTTLGLLRNLVDLNVGENRFS----GMFPRSICNISSLEWIYLPFNRFS 116
            +  N +          +  L  L + +N+ S     +  +    +  L  + L  N+  
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI-KDGNKLPKLMLLDLSSNKLK 176

Query: 117 GSLPLDIAVNLPNLKA--LAIGGNNF 140
             LPL     LP      L +  N  
Sbjct: 177 -KLPLTDLQKLPAWVKNGLYLHNNPL 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 14/163 (8%)

Query: 297 SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356
                L   V+  L   ++      S      ++ FN   + +       +   T L   
Sbjct: 13  FPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLK-E 67

Query: 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416
           L LS+N ++   PL+  +L  L +L ++ N+   +  +  +    L  L +  N      
Sbjct: 68  LHLSHNQISDLSPLK--DLTKLEELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRDTD 122

Query: 417 PLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNH 459
              L  LK+++  ++ +N L  +    L  LS +E LDL  N 
Sbjct: 123 S--LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 54/293 (18%), Positives = 92/293 (31%), Gaps = 75/293 (25%)

Query: 148 LSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSS 207
               +N    +L    +   VS     L  +   N + +N+       L  + F TN   
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNI-----QSLAGMQFFTN--- 64

Query: 208 LKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKL 267
           LK + L  NQ        I++LS                    +++L  L  L++  N+L
Sbjct: 65  LKELHLSHNQ--------ISDLS-------------------PLKDLTKLEELSVNRNRL 97

Query: 268 HGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQ 327
                        L +L L NN L      SL +L  L  L +  N L+ +I   LG   
Sbjct: 98  KNLNG---IPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLS 150

Query: 328 ILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ 387
            L + +   N++T                 +             +  LK +  +D++G +
Sbjct: 151 KLEVLDLHGNEIT-----------------NTGG----------LTRLKKVNWIDLTGQK 183

Query: 388 FSGVIPVTLSACVSLEYLNISRNFFHGII-PLSLSSLKSIKEFNVSSNNLSGL 439
                         L   N  ++     I P  +S+  S  +  V        
Sbjct: 184 CVNEPVKYQP---ELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 24/194 (12%)

Query: 25  EEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDL 84
                L N     +    +T  +      LS ++ F    +++  +    +    NL +L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKEL 68

Query: 85  NVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSI 144
           ++  N+ S + P  + +++ LE + +  NR      +        L  L +  N      
Sbjct: 69  HLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI----PSACLSRLFLDNNEL--RD 120

Query: 145 PNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNLGMGTANDLDFVTFLT 203
            +SL +  NLEIL + +N+LK   SI     L  L  L+L  N         +     LT
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNE--------ITNTGGLT 169

Query: 204 NCSSLKVISLYANQ 217
               +  I L   +
Sbjct: 170 RLKKVNWIDLTGQK 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 5e-10
 Identities = 58/382 (15%), Positives = 122/382 (31%), Gaps = 83/382 (21%)

Query: 305 LVELPLSYNNLQGNIPSSLGNCQILRMFNASR--NKLTGALPHQLLSITTLTLSLDLSNN 362
           L+  P+     Q ++ + +   Q  R++N ++   K   +     L +    L L  + N
Sbjct: 94  LMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 363 L-LNG-------SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE-YLNISRNFFH 413
           + ++G        + L V    +     +       +  + L  C S E  L + +   +
Sbjct: 153 VLIDGVLGSGKTWVALDV--CLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 414 GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFL----DL-SYNHFEGEVPKKG 468
            I P   S         +  +++   +   LK+  +   L    ++ +   +        
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN------- 260

Query: 469 VFSNKTKISL----QGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLIPVVVSCLILSS 524
            F+   KI L    +            H+       ++ P                +L  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----------LLLK 309

Query: 525 CLTIIYARRRRFAHNSVDTSPMEKQFPMVSYAELSKATSEFASSNMIEGLTLHEYAKMAL 584
            L        R     + T+P                 S  A S + +GL   +  K   
Sbjct: 310 YLDCRPQDLPREV---LTTNPR--------------RLSIIAES-IRDGLATWDNWKHVN 351

Query: 585 QEKVMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAI------IRTGVLCSM--ESPFE 636
            +K+  II+ SL  +V+E       + R   +    ++      I T +L  +  +    
Sbjct: 352 CDKLTTIIESSL--NVLEPA-----EYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKS 402

Query: 637 RMDMRDIVAKLCHTRESFLGRR 658
             D+  +V KL   + S + ++
Sbjct: 403 --DVMVVVNKLH--KYSLVEKQ 420

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 9e-07
 Identities = 65/428 (15%), Positives = 129/428 (30%), Gaps = 124/428 (28%)

Query: 313 NNLQGNIPS-SLGNCQILRMFNASRNKLTGALPHQLLSI--------TTLTLSLDLSNNL 363
           + L  +    +  N   L+ +   R  L    P + + I        T + L +   +  
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYK 175

Query: 364 LNGSLP-----LQVGN-------LKNLVKL--DISGNQFSGV-----IPVTL-SACVSLE 403
           +   +      L + N       L+ L KL   I  N  S       I + + S    L 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 404 YLNISRNFFHGIIPLS-LSSLKSIKEFNVS---------SNNLSGLIPEFLKNLSFMEFL 453
            L  S+ + + ++ L  + + K+   FN+S               L      ++S ++  
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHH 294

Query: 454 DLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELHLPSCPSKGSIKPKITLLRVLI 513
            ++    E +     +         Q             LP      +            
Sbjct: 295 SMTLTPDEVK----SLLLKYLDCRPQD------------LPREVLTTN------------ 326

Query: 514 PVVVSCLILSSCLTIIYARRRRFAHNSVDT------------SPMEKQ--------FP-- 551
           P  +S  I++  +    A    + H + D              P E +        FP  
Sbjct: 327 PRRLS--IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 552 -MVSYAELS---KATSEFASSNMIEGLTLHEYAKMALQEKVMEIIDPSLLMDV---IEN- 603
             +    LS       +     ++    LH+Y+ +  Q K   I  PS+ +++   +EN 
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 604 ---NSKIREDRRAKLEECLNAIIRTGV-----------LCSME-----SPFER--MDMRD 642
              +  I +          + +I   +           L ++E     + F    +D R 
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 643 IVAKLCHT 650
           +  K+ H 
Sbjct: 503 LEQKIRHD 510

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 81/689 (11%), Positives = 190/689 (27%), Gaps = 202/689 (29%)

Query: 31  LNLQTLAIDFNY---LTGQLPDFVGNLSALKVFYIIGNSLGG-----------KIPTTLG 76
           ++ +T    + Y   L+     FV N         + +                    + 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFD----CKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 77  LLRNLVD--LNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALA 134
               L    L+  E      F   +  I+  +++  P                P++    
Sbjct: 63  GTLRLFWTLLSKQEEMVQ-KFVEEVLRIN-YKFLMSPIKTEQ---------RQPSMM--- 108

Query: 135 IGGNNFFGSIPNSLSNASNLEI-LDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTA 193
                 +    + L N + +    +++  Q   K+      L+    + ++    G+  +
Sbjct: 109 ---TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----GVLGS 161

Query: 194 NDLDFVTFLTN--CSSLKVISLYANQFGGELPH--SIANLSSTMTDFRIGANQISGTIPP 249
                 T++    C S KV      +   ++    ++ N +S  T   +    +    P 
Sbjct: 162 GK----TWVALDVCLSYKVQC----KMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 250 GIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSL------------------ 291
                 +   + + I+           EL+ L +   Y N L                  
Sbjct: 213 WTSRSDHSSNIKLRIH-------SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 292 --------QGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGAL 343
                      +   L   T    + L       +   +L   ++  +     +     L
Sbjct: 266 CKILLTTRFKQVTDFLSAATT-THISLD------HHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 344 PHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE 403
           P ++L+     LS+                                  I  ++      +
Sbjct: 319 PREVLTTNPRRLSI----------------------------------IAESIR-----D 339

Query: 404 YLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGE 463
            L    N+ H                 V+ + L+ +I   L  L   E+  + ++     
Sbjct: 340 GLATWDNWKH-----------------VNCDKLTTIIESSLNVLEPAEYRKM-FDRL--- 378

Query: 464 VPKKGVFSNKTKISLQGNVKLCGG---------IDELHLPSCPSKGSIKPKITLLRVLIP 514
                VF     I       +            +++LH  S   K   +  I++  + + 
Sbjct: 379 ----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 515 VVVSCLILSSCL--TII--YARRRRFAHNSVDTSPMEK---QFPMVSY----AELSKATS 563
           + V      + L  +I+  Y   + F  + +    +++       + +     E  +  +
Sbjct: 435 LKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMT 491

Query: 564 EFASSNMIEGLTLHEYAKMA-LQEKV----MEIIDPSLLMDVIENNSKIRE---DRRAKL 615
            F    M+       +     L++K+            +++ ++     +    D   K 
Sbjct: 492 LF---RMV-------FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 616 EECLNAIIRTGVLCSMESPFERMDMRDIV 644
           E  +NAI+    L  +E         D++
Sbjct: 542 ERLVNAILD--FLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 67/446 (15%), Positives = 126/446 (28%), Gaps = 150/446 (33%)

Query: 22  QIPEEIGSLLNLQTL--AIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLR 79
             PE +  L  LQ L   ID N+      D   N+          +S+  +       LR
Sbjct: 193 NSPETV--LEMLQKLLYQIDPNWT--SRSDHSSNIKLRI------HSIQAE-------LR 235

Query: 80  NLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNN 139
            L+         S  +   +                   L L    N+ N KA     N 
Sbjct: 236 RLL--------KSKPYENCL-------------------LVLL---NVQNAKAW----NA 261

Query: 140 F-FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDF 198
           F               +IL  T      K   DF S    + ++L+ +++          
Sbjct: 262 FNLSC-----------KILLTTRF----KQVTDFLSAATTTHISLDHHSMT--------- 297

Query: 199 VTFLTNCSSLKVISLYANQFGGELPH---SIANLSSTMTDFRIGANQISGTIPPGIRNLV 255
              LT      ++  Y +    +LP    +      ++    I  +         IR+ +
Sbjct: 298 ---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI----IAES---------IRDGL 341

Query: 256 NLIA--LTMEINKLHGTIPDTIGEL------KNLQQLSLYNNSLQGSIPSSLGNLTKLVE 307
                   +  +KL   I  ++  L      K   +LS++  S    IP+ L        
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTIL-------- 391

Query: 308 LPLSYNNLQGNIPSSLGN-CQILRMFNASRNKLTGALPHQLLSITTLTLSL-DLSNNLLN 365
           L L + ++  +    + N      +      + T ++P   L +     +   L  ++++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 366 GSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKS 425
                     K     D+                    Y      + H  I   L +++ 
Sbjct: 452 -----HYNIPKTFDSDDLIPPYLDQ-------------YF-----YSH--IGHHLKNIEH 486

Query: 426 IKEFNVSSNNLSGLIPEFLKNLSFME 451
            +           L      +  F+E
Sbjct: 487 PERMT--------LFRMVFLDFRFLE 504

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
            ++     + R+  N+ +     GI + L  L  +    NK+             + ++ 
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 286 LYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIPS----SLGNCQILRMFNASRNKLT 340
           L +N L+ ++   +   L  L  L L  N +   + +     L + ++L +++   N++T
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD---NQIT 142

Query: 341 GALPH----QLLSITTLTL 355
             +       L S++TL L
Sbjct: 143 -TVAPGAFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 45/171 (26%)

Query: 143 SIPNSLSNASNLEILDLTSNQLKG-KVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTF 201
            IP  +        L L +N+    + +  F  L  L  +N   N +      D++   F
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-----TDIEEGAF 77

Query: 202 --LTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLI 258
              +    +  I L +N+           L +               +   + + L +L 
Sbjct: 78  EGASG---VNEILLTSNR-----------LEN---------------VQHKMFKGLESLK 108

Query: 259 ALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP----SSLGNLTKL 305
            L +  N++     D+   L +++ LSLY+N +  ++      +L +L+ L
Sbjct: 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 108 IYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK 167
           + L  N F+      I   LP L+ +    N        +   AS +  + LTSN+L+  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 168 VSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF 218
               F  L++L  L L  N +       +   +F    SS++++SLY NQ 
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITC-----VGNDSF-IGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 8/144 (5%)

Query: 318 NIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLK 376
           +IP        LR+   + N+ T      +         ++ SNN +   +         
Sbjct: 29  HIPQYT---AELRL---NNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 377 NLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
            + ++ ++ N+   V         SL+ L +  N    +   S   L S++  ++  N +
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 437 SGLIPEFLKNLSFMEFLDLSYNHF 460
           + + P     L  +  L+L  N F
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLANPF 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 35/164 (21%)

Query: 152 SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVI 211
           +N +IL L  NQ+       F SL NL  L L  N L                       
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL----------------------- 76

Query: 212 SLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGT 270
                   G LP  + +  + +T   +G NQ++  +P  +   LV+L  L M  NKL   
Sbjct: 77  --------GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-E 126

Query: 271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNN 314
           +P  I  L +L  L+L  N L+     +   L+ L    L + N
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL-FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ---GNIPSSLGNCQILRMFNASRNK 338
           Q L L++N +    P    +L  L EL L  N L      +  SL    +L +     N+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL---GTNQ 99

Query: 339 LTGALPHQLL-SITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391
           LT  LP  +   +  L   L +  N L   LP  +  L +L  L +  NQ   +
Sbjct: 100 LT-VLPSAVFDRLVHLKE-LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTI-GELKNLQQLS 285
           A + +      +  NQI+   P    +L+NL  L +  N+L   +P  +   L  L  L 
Sbjct: 36  AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94

Query: 286 LYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP 344
           L  N L   +PS++   L  L EL +  N L   +P  +     L      +N+L  ++P
Sbjct: 95  LGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151

Query: 345 H----QLLSITTLTL 355
           H    +L S+T   L
Sbjct: 152 HGAFDRLSSLTHAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 10/126 (7%)

Query: 65  NSLGGKIPTTLGLLRNLVDLNVGENRF----SGMFPRSICNISSLEWIYLPFNRFSGSLP 120
           N +    P     L NL +L +G N+      G+F      ++ L  + L  N+ +  LP
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----LTQLTVLDLGTNQLT-VLP 104

Query: 121 LDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW 180
             +   L +LK L +  N     +P  +   ++L  L L  NQLK      F  L +L+ 
Sbjct: 105 SAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 181 LNLEQN 186
             L  N
Sbjct: 164 AYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 38/161 (23%), Positives = 56/161 (34%), Gaps = 36/161 (22%)

Query: 131 KALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM 190
           + L +  N      P    +  NL+ L L SNQL       F SL  L+ L+L  N L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-- 100

Query: 191 GTANDLDFVTF--LTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIP 248
                L    F  L +   LK + +  N+           L+                +P
Sbjct: 101 ---TVLPSAVFDRLVH---LKELFMCCNK-----------LTE---------------LP 128

Query: 249 PGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNN 289
            GI  L +L  L ++ N+L          L +L    L+ N
Sbjct: 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 54/328 (16%), Positives = 114/328 (34%), Gaps = 61/328 (18%)

Query: 149 SNASNLEILDLTSNQLKGKVSIDFSSL-----KNLSWLNLEQNNLGMGTANDLDFVTFLT 203
           +  +++  L+L+ N L  K S +   +      N++ LNL  N L   ++++L   T   
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL-VKTLAA 106

Query: 204 NCSSLKVISLYANQFGGE----LPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIA 259
              ++ V+ L  N F  +       + +NL +++T   +  N +          L+ ++A
Sbjct: 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG---IKSSDELIQILA 163

Query: 260 LTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ----GSIPSSLGNL-TKLVELPLSYNN 314
                               N+  L+L  N+L       +   L ++   +  L LS N 
Sbjct: 164 ----------------AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207

Query: 315 LQGN----IPSSLGNCQI-LRMFNASRNKLTG----ALPHQLLSITTLTLSLDLSNNLLN 365
           L       +     +    +   N   N L G     L     S+  L  ++ L  +++ 
Sbjct: 208 LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ-TVYLDYDIVK 266

Query: 366 G-------SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV----------SLEYLNIS 408
                   +L     N++ ++ +D +G +      + +S  +          SL    + 
Sbjct: 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLI 326

Query: 409 RNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
               H      L+    ++E   +   L
Sbjct: 327 FAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 54/358 (15%), Positives = 112/358 (31%), Gaps = 64/358 (17%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLL-----NLQTLAIDFNYLTGQLPDFVGNLSAL 57
            S    +  L +S N L      E+         ++ +L +  N L  +  D +     L
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV--QIL 75

Query: 58  KVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNI-----SSLEWIYLPF 112
                              +  N+  LN+  N  S      +         ++  + L +
Sbjct: 76  AA-----------------IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118

Query: 113 NRFSGSLPLDIAVNL----PNLKALAIGGNNFFGSIPNSLSNA-----SNLEILDLTSNQ 163
           N FS     +          ++ +L + GN+      + L        +N+  L+L  N 
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 164 LKGKVSIDFSSL-----KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF 218
           L  K   + +        +++ L+L  N LG+ +  +L ++ F +  + +  ++L  N  
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-FSSIPNHVVSLNLCLNCL 237

Query: 219 GGELPHSIANL---SSTMTDFRIGANQISGTIPPGIRNLV-------NLIALTMEINKLH 268
            G    ++  L      +    +  + +        + L         +I +     ++H
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

Query: 269 GTIPDTIGEL-----KNLQQLSLYNNSL-----QGSIPSSLGNLTKLVELPLSYNNLQ 316
            +    I  L           SL N  L       +    L    +L E   +   L 
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416
           + L+  L+  +      N     +LD+ G +   VI    +     + ++ S N    I 
Sbjct: 2   VKLTAELIEQAAQYT--NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN---EIR 55

Query: 417 PLS-LSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE--GEVPKKGVFSNK 473
            L     L+ +K   V++N +  +     + L  +  L L+ N     G++       + 
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 474 TKISLQGN 481
           T + +  N
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 101 NISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLT 160
           N      + L   +      L     L    A+    +N    +         L+ L + 
Sbjct: 17  NAVRDRELDLRGYKIPVIENLG--ATLDQFDAIDFS-DNEIRKLDG-FPLLRRLKTLLVN 72

Query: 161 SNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN 216
           +N++         +L +L+ L L  N+L      +L  +  L +  SL  + +  N
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSL-----VELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 321 SSLGNCQILRMFNASRNKLT--GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNL 378
           +   N    R  +    K+     L   L     +    D S+N +          L+ L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAI----DFSDNEIRKLDGFP--LLRRL 66

Query: 379 VKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLS-LSSLKSIKEFNVSSN 434
             L ++ N+   +      A   L  L ++ N    +  L  L+SLKS+    +  N
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 25  EEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDL 84
            +  + +  + L +    +   + +    L          N +  K+     LLR L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 85  NVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGN 138
            V  NR   +       +  L  + L  N       LD   +L +L  L I  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 101 NISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLT 160
             S ++ + L  +R +      +      L+ L+        SI N L   + L+ L+L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIAN-LPKLNKLKKLELS 72

Query: 161 SNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN 216
            N++ G + +      NL+ LNL  N +      DL  +  L    +LK + L+  
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI-----KDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 370 LQVGNLKNLVKLDISGNQFS-GVIPVTLSACVSLEYLNISRNFFHGIIPLS-LSSLKSIK 427
           L+     ++ +L +  ++ + G +         LE+L+       G+  ++ L  L  +K
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV---GLTSIANLPKLNKLK 67

Query: 428 EFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE--GEVPKKGVFSNKTKISLQGN 481
           +  +S N +SG +    +    +  L+LS N  +    +       N   + L   
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 251 IRNLVNLIALTMEINKLHGT------IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
                +++A   E  +LHG       +  T+  LK  + L+L  N+++  I SSL  +  
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMEN 71

Query: 305 LVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTL--SLDLSNN 362
           L  L L  N ++  I +       L     S N++       L  I  L     L +SNN
Sbjct: 72  LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-----SLSGIEKLVNLRVLYMSNN 125

Query: 363 LLNGSLPLQV-GNLKNLVKLDISGNQFS 389
            +     +     L  L  L ++GN   
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 12/138 (8%)

Query: 81  LVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNF 140
            V+L+        M   ++  + + + + L  N       L     + NL+ L++G N  
Sbjct: 27  KVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISSLS---GMENLRILSLGRNLI 82

Query: 141 FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVT 200
              I N  + A  LE L ++ NQ+   +S     L NL  L +  N +      +   + 
Sbjct: 83  -KKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKI-----TNWGEID 134

Query: 201 FLTNCSSLKVISLYANQF 218
            L     L+ + L  N  
Sbjct: 135 KLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 14/155 (9%)

Query: 261 TMEINKLHGTIPDTIGELKNLQQLSLYN--NSLQGSIPSSLGNLTKLVELPLSYNNLQGN 318
           T   + +              +++ L+     ++  + ++L  L     L LS NN++  
Sbjct: 5   TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-K 62

Query: 319 IPSSLGNCQILRMFNASRNKLT--GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLK 376
           I SSL   + LR+ +  RN +     L     ++      L +S N +     ++   L 
Sbjct: 63  I-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEE----LWISYNQIASLSGIE--KLV 115

Query: 377 NLVKLDISGNQFSGVIPV-TLSACVSLEYLNISRN 410
           NL  L +S N+ +    +  L+A   LE L ++ N
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 345 HQLLSITTLT-LSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE 403
            + +  T    + L      +   +   +  LK    L +S N    +    LS   +L 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS--LSGMENLR 73

Query: 404 YLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE-- 461
            L++ RN    I  L  +   +++E  +S N ++ L    ++ L  +  L +S N     
Sbjct: 74  ILSLGRNLIKKIENLD-AVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNW 130

Query: 462 GEVPKKGVFSNKTKISLQGN 481
           GE+ K         + L GN
Sbjct: 131 GEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 39/151 (25%)

Query: 144 IPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNLGMGTANDLDFVTFL 202
           +  +LS     + L L++N ++    I   S ++NL  L+L +N +              
Sbjct: 40  MDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIK-------KIENLD 89

Query: 203 TNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTM 262
               +L+ + +  NQ        IA+LS                   GI  LVNL  L M
Sbjct: 90  AVADTLEELWISYNQ--------IASLS-------------------GIEKLVNLRVLYM 122

Query: 263 EINKLHG-TIPDTIGELKNLQQLSLYNNSLQ 292
             NK+      D +  L  L+ L L  N L 
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 38/163 (23%)

Query: 155 EILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLY 214
             LDL +N LK   +  F  L +L+ L L  N L                          
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-------------------------- 64

Query: 215 ANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPD 273
                  LP+ + N  +++T   +  NQ+  ++P G+   L  L  L +  N+L  ++PD
Sbjct: 65  -----QSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPD 117

Query: 274 TI-GELKNLQQLSLYNNSLQGSIPS-SLGNLTKLVELPLSYNN 314
            +  +L  L+ L LY N L+ S+P      LT L  + L ++N
Sbjct: 118 GVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL-HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 15/138 (10%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSL 286
             + +  T   +  N +          L +L  L +  NKL         +L +L  L+L
Sbjct: 24  TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83

Query: 287 YNNSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIPS----SLGNCQILRMFNASRNKLTG 341
             N LQ S+P+ +   LT+L EL L+ N LQ ++P      L   + LR++    N+L  
Sbjct: 84  STNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQ---NQLK- 137

Query: 342 ALPH----QLLSITTLTL 355
           ++P     +L S+  + L
Sbjct: 138 SVPDGVFDRLTSLQYIWL 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 13/132 (9%)

Query: 265 NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ---GNIPS 321
           ++   ++P  I        L L  NSL+         LT L +L L  N LQ     + +
Sbjct: 16  SQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73

Query: 322 SLGNCQILRMFNASRNKLTGALPHQLL-SITTLTLSLDLSNNLLNGSLPLQV-GNLKNLV 379
            L +   L +   S N+L  +LP+ +   +T L   L L+ N L  SLP  V   L  L 
Sbjct: 74  KLTSLTYLNL---STNQLQ-SLPNGVFDKLTQLKE-LALNTNQLQ-SLPDGVFDKLTQLK 127

Query: 380 KLDISGNQFSGV 391
            L +  NQ   V
Sbjct: 128 DLRLYQNQLKSV 139

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 58/420 (13%), Positives = 121/420 (28%), Gaps = 72/420 (17%)

Query: 97  RSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFG-------------- 142
           +S   I       +         P  +    P ++++ + G   F               
Sbjct: 35  KSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVY 94

Query: 143 -SIPNSLSNASNLEILDLTSNQL--KGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFV 199
             I    S+ + LE + L    +       I   S KN   L L          +     
Sbjct: 95  PWIEAMSSSYTWLEEIRLKRMVVTDDCLELI-AKSFKNFKVLVLS----SCEGFSTDGLA 149

Query: 200 TFLTNCSSLKVISLYANQFGGELPHSIANLSSTMT-----DFRIGANQISG----TIPPG 250
                C +LK + L  +       H +++   T T     +    A+++S      +   
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209

Query: 251 IRNLVNLIALTMEINKLHGTIPDT-----IGELKNLQQLSLY------NNSLQGSIPSSL 299
             NL +L        KL+  +P       +     L++L            +   +  +L
Sbjct: 210 CPNLKSL--------KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261

Query: 300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDL 359
               +L  L   ++ +   +P+    C  L   N S   +      +LL        L +
Sbjct: 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321

Query: 360 SNNLLNGSLPLQVGNLKNLVKLDISGNQ---FSGVIPVT-------LSACVSLEYLNISR 409
            + + +  L +     K+L +L +  ++       + +T          C  LE +    
Sbjct: 322 LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381

Query: 410 NFF------------HGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSY 457
                            +    L  ++      ++   L       +++   +  L LS 
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 62/393 (15%), Positives = 122/393 (31%), Gaps = 45/393 (11%)

Query: 78  LRNLVDLNVGENRFSGMFPRSICNIS----SLEWIYLP--FNRFSGSLPLDIAVNLPNLK 131
            RNL +L++ E+    +    + +      SL  + +    +  S S    +    PNLK
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 132 ALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMG 191
           +L +        +   L  A  LE L       + +  +       LS     +   G  
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 192 TANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI 251
            A         + CS L  ++L            +      +    +  + I      G+
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDA---GL 330

Query: 252 RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311
             L +                      K+L++L ++ +      P+       LV + + 
Sbjct: 331 EVLAST--------------------CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370

Query: 312 YNNLQGNIPSSLGNCQI----LRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS 367
              L+  +       Q+    L     +R  +T       L I        L+   L+  
Sbjct: 371 CPKLESVL---YFCRQMTNAALITIARNRPNMT----RFRLCIIEPKAPDYLTLEPLDIG 423

Query: 368 LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFF--HGIIPLSLSSLKS 425
               V + K+L +L +SG     V     +    +E L+++       G+  + LS   S
Sbjct: 424 FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-LSGCDS 482

Query: 426 IKEFNVSSNNLSGL-IPEFLKNLSFMEFLDLSY 457
           +++  +         +      L  M  L +S 
Sbjct: 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 101 NISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLT 160
             +++  + L   + +      +     NL+ L++       S+ N L     L+ L+L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSN-LPKLPKLKKLELS 79

Query: 161 SNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN 216
            N++ G + +    L NL+ LNL  N L      D+  +  L     LK + L+  
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 370 LQVGNLKNLVKLDISGNQFS-GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKE 428
           L+      + +L +   + + G I    +  V+LE+L++       +  L    L  +K+
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP--KLPKLKK 75

Query: 429 FNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE--GEVPKKGVFSNKTKISLQGN 481
             +S N + G +    + L  +  L+LS N  +    +           + L   
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS 285
             + S+ T   + +N++  ++P G+   L  L  L++  N++         +L  L  L 
Sbjct: 24  TGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82

Query: 286 LYNNSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIPS----SLGNCQILRMFN 333
           L+ N LQ S+P+ +   LT+L EL L  N L+ ++P      L + Q + +  
Sbjct: 83  LHENKLQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 133

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 17/118 (14%)

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL-GNLTKL 305
           +P GI    +   L +E NKL         +L  L +LSL  N +Q S+P  +   LTKL
Sbjct: 22  VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKL 78

Query: 306 VELPLSYNNLQGNIPS----SLGNCQILRMFNASRNKLTGALPH----QLLSITTLTL 355
             L L  N LQ ++P+     L   + L +     N+L  ++P     +L S+  + L
Sbjct: 79  TILYLHENKLQ-SLPNGVFDKLTQLKELALDT---NQLK-SVPDGIFDRLTSLQKIWL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 39/142 (27%)

Query: 152 SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTF--LTNCSSLK 209
           S+   L+L SN+L+      F  L  L+ L+L QN +       L    F  LT    L 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-----QSLPDGVFDKLTK---LT 79

Query: 210 VISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLH 268
           ++ L+ N+           L S               +P G+   L  L  L ++ N+L 
Sbjct: 80  ILYLHENK-----------LQS---------------LPNGVFDKLTQLKELALDTNQLK 113

Query: 269 GTIPDTI-GELKNLQQLSLYNN 289
            ++PD I   L +LQ++ L+ N
Sbjct: 114 -SVPDGIFDRLTSLQKIWLHTN 134

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 9e-07
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 264 INKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS-SLGNLTKLVELPLSYNNLQGNIPSS 322
                      +   +NL +L + N      +    L  L +L  L +  + L+   P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 323 LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN 365
                 L   N S N L  +L  + +   +L   L LS N L+
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQ-ELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 326 CQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDIS 384
                    +R+       H L     LT  L + N      L L+    L  L  L I 
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLT-ELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 385 GNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
            +    V P        L  LN+S N    +   ++  L S++E  +S N L
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIP-VTLSACVSLEYLNISRNFFHGIIPLS 419
                      +   +NL +L I   Q    +    L     L  L I ++    + P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 420 LSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHF 460
                 +   N+S N L  L  + ++ LS ++ L LS N  
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 96  PRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLE 155
              +    +L  +Y+   +    L L     L  L+ L I  +      P++      L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 156 ILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL 188
            L+L+ N L+         L +L  L L  N L
Sbjct: 84  RLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPD-TIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
                +    NL  L +E  +    +    +  L  L+ L++  + L+   P +     +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 305 LVELPLSYNNLQ 316
           L  L LS+N L+
Sbjct: 82  LSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 221 ELPHSIANLSSTMTDFRIGANQISGTIPPG-IRNLVNLIALTMEINKLHGTIPDTIGELK 279
           +  H +    +  T+  I   Q    +    +R L  L  LT+  + L    PD      
Sbjct: 22  DSLHHLPGAENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ 316
            L +L+L  N+L+ S+         L EL LS N L 
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 294 SIPSSLGNLTKLVELPLSYNNLQGNIPS-SLGNCQILRMFNASRNKLTGALPHQLLSITT 352
                L     L EL +       ++    L     LR     ++ L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 353 LTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF 388
           L+  L+LS N L  SL  +     +L +L +SGN  
Sbjct: 82  LS-RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 209 KVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKL 267
             + L  N+ G      +      +    +  NQ++  I P       ++  L +  NK+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 268 HGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELPLSYNN 314
                     L  L+ L+LY+N +   +   S  +L  L  L L  +N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNL-ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 18/119 (15%)

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTI-GELKNLQQLSLYNNSLQGSIPSSL-GNLTK 304
           IP  I   ++   L +  N+L     D + G L +L +L L  N L   I  +     + 
Sbjct: 23  IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79

Query: 305 LVELPLSYNNLQGNIPS----SLGNCQILRMFNASRNKLTGALPH----QLLSITTLTL 355
           + EL L  N ++  I +     L   + L +++   N+++  +       L S+T+L L
Sbjct: 80  IQELQLGENKIK-EISNKMFLGLHQLKTLNLYD---NQIS-CVMPGSFEHLNSLTSLNL 133

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 16/121 (13%)

Query: 71  IPTTLGLLRNLVDLNVGENRFSGMFPRSI-CNISSLEWIYLPFNRFSGSLPLDIAVNLPN 129
           IP     L     LN   N    +    +   +  L  + L  N+ +  +  +      +
Sbjct: 27  IPLHTTELL----LND--NELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79

Query: 130 LKALAIGGNNFFGSIPNSL-SNASNLEILDLTSNQLKGKVSI---DFSSLKNLSWLNLEQ 185
           ++ L +G N     I N +      L+ L+L  NQ+     +    F  L +L+ LNL  
Sbjct: 80  IQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQIS---CVMPGSFEHLNSLTSLNLAS 135

Query: 186 N 186
           N
Sbjct: 136 N 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 20/118 (16%)

Query: 108 IYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSL-SNASNLEILDLTSNQLKG 166
           + L  N         +   LP+L  L +   N    I  +    AS+++ L L  N++K 
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 167 KVSID---FSSLKNLSWLNLEQNNLG---MGTANDLDFVTFLTNCSSLKVISLYANQF 218
              I    F  L  L  LNL  N +     G+   L         +SL  ++L +N F
Sbjct: 92  --EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL---------NSLTSLNLASNPF 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 16/117 (13%)

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLV 306
           +P GI    ++  L ++ N+    +P  +   K+L  + L NN +      S  N+T+L+
Sbjct: 25  LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 307 ELPLSYNNLQGNIPS----SLGNCQILRMFNASRNKLTGALPH----QLLSITTLTL 355
            L LSYN L+  IP      L + ++L +     N ++  +P      L +++ L +
Sbjct: 82  TLILSYNRLR-CIPPRTFDGLKSLRLLSLHG---NDIS-VVPEGAFNDLSALSHLAI 133

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLD 197
            N F  +P  LSN  +L ++DL++N++    +  FS++  L  L L  N L        D
Sbjct: 40  GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99

Query: 198 FVTFLTNCSSLKVISLYANQFGGELPHSI-ANLSSTMTDFRIGAN 241
            +       SL+++SL+ N     +P     +LS+ ++   IGAN
Sbjct: 100 GLK------SLRLLSLHGNDI-SVVPEGAFNDLSA-LSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 36/140 (25%)

Query: 152 SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVI 211
            ++  L L  NQ    V  + S+ K+L+ ++L  N +   +         +T    L  +
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN---MTQ---LLTL 83

Query: 212 SLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGT 270
            L  N+           L                 IPP     L +L  L++  N +   
Sbjct: 84  ILSYNR-----------LRC---------------IPPRTFDGLKSLRLLSLHGNDIS-V 116

Query: 271 IPDTI-GELKNLQQLSLYNN 289
           +P+    +L  L  L++  N
Sbjct: 117 VPEGAFNDLSALSHLAIGAN 136

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 16/234 (6%)

Query: 229 LSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH-GTIPDTIGELKNLQQLSLY 287
           LS  +  FR   + +   +         +  + +  + +   T+   + +   LQ LSL 
Sbjct: 68  LSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126

Query: 288 NNSLQGSIPSSLGNLTKLVELPLSY-NNLQGNIPSSLG-NCQILRMFNASRNK------L 339
              L   I ++L   + LV L LS  +        +L  +C  L   N S         +
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186

Query: 340 TGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISG-NQFSGVIPVTLSA 398
             A+ H   +IT L LS     NL    L   V    NLV LD+S               
Sbjct: 187 QVAVAHVSETITQLNLS-GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245

Query: 399 CVSLEYLNISRNFF---HGIIPLS-LSSLKSIKEFNVSSNNLSGLIPEFLKNLS 448
              L++L++SR +      ++ L  + +LK+++ F +  +    L+ E L +L 
Sbjct: 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 63/371 (16%), Positives = 118/371 (31%), Gaps = 54/371 (14%)

Query: 79  RNLVDLNVGENRFSGMFPRSICNIS-------SLEWIYLPFNRFSGSLPLDIAVNLPNLK 131
           R +  L + E+ FS    + +  ++        L +    F + S      IA N  +L 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 132 ALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMG 191
           ++ +G       +      A+NLE     S      +   + +L     L      LG+ 
Sbjct: 224 SVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR----LGLS 278

Query: 192 TANDLDFVTFLTNCSSLKVISL-YANQFGGELPHSIA--------NLSSTMTDFRIGANQ 242
                +        + ++ + L YA     +    I            + + D  +    
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-- 336

Query: 243 ISGTIPPGIRNLVNL----IALTMEINKLHGTIPDT----IGE-LKNLQQLSLY-----N 288
               +    + L  L     A    +    G +       + +  + L+ +++Y     N
Sbjct: 337 ----LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392

Query: 289 NSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLG------NCQILRMFNASRN--KLT 340
            SL+ SI + L NL     + L       ++P   G       C+ LR F        LT
Sbjct: 393 ESLE-SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451

Query: 341 GALPHQLLSITTLTLSLDLSN-NLLNGSLPLQVGNLKNLVKLDISGNQFS--GVIPVTLS 397
                 +   +     + L      +  L        NL KL++ G  FS   +    ++
Sbjct: 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA-VT 510

Query: 398 ACVSLEYLNIS 408
              SL YL + 
Sbjct: 511 KLPSLRYLWVQ 521

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGI-RNLVNLIALTMEINKLHGTIPDTI-GELKNLQQL 284
             + +T     +  NQI+  + PG+   L  L  L ++ N+L   +P  +  +L  L QL
Sbjct: 26  TGIPTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQL 83

Query: 285 SLYNNSLQGSIPS-SLGNLTKLVELPLSYNN 314
           SL +N L+ SIP  +  NL  L  + L  NN
Sbjct: 84  SLNDNQLK-SIPRGAFDNLKSLTHIWL-LNN 112

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 8e-05
 Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 40/232 (17%)

Query: 94  MFPRSICNISSLEWIYLPF-----NRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSL 148
               +    +  E ++           S    +D++  L  +  L         ++    
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK 189

Query: 149 SNASNLEILDLTSNQLKGKV--SIDFSSLKNLSWLNL---EQNNLGMGTANDLDFVTFLT 203
               NL+ L++ S  L   V   I  S L NL  L L    ++    G  N    +    
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249

Query: 204 NCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTME 263
              +LK + +   +    +                               L  L  + + 
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESD----------------------ILPQLETMDIS 287

Query: 264 INKLHGT----IPDTIGELKNLQQLSLYNNSLQG----SIPSSLGNLTKLVE 307
              L       + D + ++K+L+ +++  N L       +  SL     + +
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSD 339

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 32/183 (17%)

Query: 292 QGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNA--SRNKLTGALPHQLLS 349
           Q  +   L  +  L  L +   N          N + L + +     + +   L   L +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN 220

Query: 350 ITTLTLSLDLSNNLLNGSLP-----LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEY 404
           +  L L + + +   +G +             NL  L I   +   V+            
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES----- 275

Query: 405 LNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSG----LIPEFLKNLSFMEFLDLSYNHF 460
                             L  ++  ++S+  L+     L+ + +  +  ++F+++ YN+ 
Sbjct: 276 ----------------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

Query: 461 EGE 463
             E
Sbjct: 320 SDE 322

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 42/277 (15%), Positives = 87/277 (31%), Gaps = 40/277 (14%)

Query: 148 LSNASNLEILDLTSNQLKGKVSIDFSS-LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCS 206
            S    L+ ++L S QL                 L L+ N+LG     DL  +  L +  
Sbjct: 97  GSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-LLHDQC 155

Query: 207 SLKVISLYANQFGGELPHSIANL---SSTMTDFRIGANQISGTIPPGIRNLVNLIALTME 263
            +  + L  N         +      ++++T   +    +      G    + L+A  ++
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG---DEG----LELLAAQLD 208

Query: 264 INKLHGTIPDTIGELKNLQQLSLYNNSLQGS----IPSSLGNLTKLVELPLSYNNLQGNI 319
            N             + LQ+L++  N    +    +  +      L  L L +N L    
Sbjct: 209 RN-------------RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL---- 251

Query: 320 PSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKN-- 377
            SS G   +  +  A+       +     +  +   S+ LS    N +   +    ++  
Sbjct: 252 -SSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE 310

Query: 378 LVKLDISGNQFS----GVIPVTLSACVSLEYLNISRN 410
           L+  D+  ++ +          L     +  L     
Sbjct: 311 LLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSL-GNLTKL 305
           +P GI    +   L +  N++    P     L NLQQL   +N L  +IP+ +   LT+L
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQL 83

Query: 306 VELPLSYNNLQGNIPS----SLGNCQILRMFN 333
            +L L+ N+L+ +IP     +L +   + ++N
Sbjct: 84  TQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYN 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	659
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.93
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.31
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	95.65
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	95.58
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	95.44
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	94.03
4aoj_A	329	High affinity nerve growth factor receptor; transf	93.78
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	92.43
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	91.52
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	91.18
3soc_A	322	Activin receptor type-2A; structural genomics cons	90.9
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	90.56
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	90.42
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	89.48
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	89.35
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	89.23
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	89.21
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	88.47
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	88.42
3q4u_A	301	Activin receptor type-1; structural genomics conso	88.4
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	87.34
3pls_A	298	Macrophage-stimulating protein receptor; protein k	86.83
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	86.77
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	86.75
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	86.71
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	86.57
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	86.49
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	86.04
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	85.95
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	85.92
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	84.6
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	84.42
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	84.23
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	83.94
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	83.68
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	83.34
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	83.34
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	83.01
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	82.98
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	82.64
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	82.53
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	82.51
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	82.43
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	82.35
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	82.32
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	82.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	81.37
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	81.33
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	81.3
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	80.94
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	80.82
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	80.74
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	80.39
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	80.36

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.1e-62  Score=546.70  Aligned_cols=485  Identities=33%  Similarity=0.512  Sum_probs=319.4

Q ss_pred             CCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcc-------------
Q 038552            4 SRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGK-------------   70 (659)
Q Consensus         4 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------   70 (659)
                      .++++|++|++++|.+++.+|. +.++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.             
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            4566666666666666655554 66666666666666666666666666666666666666655444             


Q ss_pred             ---------cccccCCC-CCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcC
Q 038552           71 ---------IPTTLGLL-RNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNF  140 (659)
Q Consensus        71 ---------~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  140 (659)
                               +|..+... ++|++|++++|.+++.+|..++++++|++|++++|.+++.+|......+++|++|++++|.+
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence                     44444332 45555555555554445555555555555555555554445444223455555555555555


Q ss_pred             CcccChhccCCC-CCCEEEccCCCCccccccccCC--CCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCc
Q 038552          141 FGSIPNSLSNAS-NLEILDLTSNQLKGKVSIDFSS--LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQ  217 (659)
Q Consensus       141 ~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~  217 (659)
                      ++.+|..+.+++ +|++|++++|.+++.++..+..  +++|++|++++|.+++      .++..+..+++|++|++++|.
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~N~  429 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG------KIPPTLSNCSELVSLHLSFNY  429 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE------ECCGGGGGCTTCCEEECCSSE
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc------ccCHHHhcCCCCCEEECcCCc
Confidence            444455444444 4555555555555444444443  4455555555555443      334455556666666666666


Q ss_pred             cccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCc
Q 038552          218 FGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS  297 (659)
Q Consensus       218 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  297 (659)
                      +.+.+|..+..+. +|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|++.+.+|.
T Consensus       430 l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  508 (768)
T 3rgz_A          430 LSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK  508 (768)
T ss_dssp             EESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             ccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence            6666666655554 566666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccc----------------------
Q 038552          298 SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTL----------------------  355 (659)
Q Consensus       298 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~----------------------  355 (659)
                      .++.+++|++|++++|.+.+.+|..+..+++|+.|++++|+++|.+|..++....+..                      
T Consensus       509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (768)
T 3rgz_A          509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH  588 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence            6666666666666666666666666666666666666666666666655544322210                      


Q ss_pred             -----------------------eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCC
Q 038552          356 -----------------------SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFF  412 (659)
Q Consensus       356 -----------------------~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  412 (659)
                                             .++++.|.+.|.+|..+..+++|++|+|++|+++|.+|..+++++.|++|+|++|.+
T Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  668 (768)
T 3rgz_A          589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI  668 (768)
T ss_dssp             SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence                                   122333445555566667788999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccCCCCC
Q 038552          413 HGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDELH  492 (659)
Q Consensus       413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~  492 (659)
                      +|.+|..++++++|+.|||++|+++|.+|..+..+++|+.||+++|+++|.+|..+.+.++...++.|||++||.+    
T Consensus       669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----  744 (768)
T 3rgz_A          669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----  744 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----
T ss_pred             CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999864    


Q ss_pred             CCCCCCCC
Q 038552          493 LPSCPSKG  500 (659)
Q Consensus       493 ~~~c~~~~  500 (659)
                      .++|....
T Consensus       745 l~~C~~~~  752 (768)
T 3rgz_A          745 LPRCDPSN  752 (768)
T ss_dssp             SCCCCSCC
T ss_pred             CcCCCCCc
Confidence            23676443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-58  Score=517.53  Aligned_cols=475  Identities=32%  Similarity=0.543  Sum_probs=336.6

Q ss_pred             CCCCCCCEEEccCCcccccCchh---hcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCC
Q 038552            4 SRYSNLIELRVSKNKLEGQIPEE---IGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRN   80 (659)
Q Consensus         4 ~~~~~L~~L~ls~n~~~~~~~~~---~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   80 (659)
                      .++++|++|++++|.+++..+..   +.++++|++|++++|.+.+..+  +..+++|++|++++|.+.+.+|. ++++++
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~  224 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSA  224 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCS
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCC
Confidence            56777777777777777666655   5555555555555555554333  24555555555555555444444 555555


Q ss_pred             CCEEEeecCcCCccCcccccCCCCCCEEeccCcccc----------------------ccChHHHhcCCCCCcEEEccCC
Q 038552           81 LVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFS----------------------GSLPLDIAVNLPNLKALAIGGN  138 (659)
Q Consensus        81 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~----------------------~~~~~~~~~~l~~L~~L~l~~n  138 (659)
                      |++|++++|.+++.+|..++++++|++|++++|.++                      +.+|..++..+++|++|++++|
T Consensus       225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n  304 (768)
T 3rgz_A          225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN  304 (768)
T ss_dssp             CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred             CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence            555555555555555555555555555555555554                      4444444322355555555555


Q ss_pred             cCCcccChhccCCCCCCEEEccCCCCccccccc-cCCCCCCCEEECCCCCCCCCCCCCccccccccCCC-CCcEEEccCC
Q 038552          139 NFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCS-SLKVISLYAN  216 (659)
Q Consensus       139 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~n  216 (659)
                      .+++.+|..++++++|++|++++|.+.+.+|.. +..+++|++|++++|.+++      .++..+..++ +|++|++++|
T Consensus       305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~~L~~L~Ls~N  378 (768)
T 3rgz_A          305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG------ELPESLTNLSASLLTLDLSSN  378 (768)
T ss_dssp             EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE------CCCTTHHHHTTTCSEEECCSS
T ss_pred             cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc------cccHHHHhhhcCCcEEEccCC
Confidence            555455555555555555555555554444433 4555555555555554443      2233333333 5555555555


Q ss_pred             ccccccChhHHhc-cccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCC
Q 038552          217 QFGGELPHSIANL-SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSI  295 (659)
Q Consensus       217 ~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  295 (659)
                      .+.+.+|..+... ..+|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|.+.+.+
T Consensus       379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  458 (768)
T 3rgz_A          379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI  458 (768)
T ss_dssp             EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC
Confidence            5555554444331 225777777777777778888888888888888888888888888888888888888888888888


Q ss_pred             CccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccC
Q 038552          296 PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNL  375 (659)
Q Consensus       296 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l  375 (659)
                      |..+..+++|++|++++|.+++.+|..+.++++|++|++++|++++.+|..+..++.++ .|++++|.+.+.+|..+..+
T Consensus       459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l  537 (768)
T 3rgz_A          459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNSFSGNIPAELGDC  537 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGGC
T ss_pred             CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-EEECCCCcccCcCCHHHcCC
Confidence            88888888899999999888888888888888999999999998888888888888888 89999999988888888889


Q ss_pred             CCCceeecCCCcccccCCcc------------------------------------------------------------
Q 038552          376 KNLVKLDISGNQFSGVIPVT------------------------------------------------------------  395 (659)
Q Consensus       376 ~~L~~L~L~~n~l~~~~~~~------------------------------------------------------------  395 (659)
                      ++|++|+|++|+++|.+|..                                                            
T Consensus       538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  617 (768)
T 3rgz_A          538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS  617 (768)
T ss_dssp             TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred             CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            99999999988887766643                                                            


Q ss_pred             ----------ccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          396 ----------LSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       396 ----------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                                +..+++|++|+|++|+++|.+|..++++++|+.|++++|.++|.+|..++.+++|+.||+++|+++|.+|
T Consensus       618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred             ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence                      3345789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CccCCcccccccCCCCCcccCC
Q 038552          466 KK-GVFSNKTKISLQGNVKLCGGID  489 (659)
Q Consensus       466 ~~-~~~~~~~~~~~~~n~~lc~~~~  489 (659)
                      .. +.+..++.+++++|+ +.|.+|
T Consensus       698 ~~l~~l~~L~~L~ls~N~-l~g~iP  721 (768)
T 3rgz_A          698 QAMSALTMLTEIDLSNNN-LSGPIP  721 (768)
T ss_dssp             GGGGGCCCCSEEECCSSE-EEEECC
T ss_pred             hHHhCCCCCCEEECcCCc-ccccCC
Confidence            65 567788999999885 445444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.8e-53  Score=464.12  Aligned_cols=469  Identities=23%  Similarity=0.238  Sum_probs=405.0

Q ss_pred             CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552            7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV   86 (659)
Q Consensus         7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   86 (659)
                      +++++|++++|.+++..|.+|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            37899999999999888889999999999999999999888999999999999999999998888899999999999999


Q ss_pred             ecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCC--EEEccCCCC
Q 038552           87 GENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLE--ILDLTSNQL  164 (659)
Q Consensus        87 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~l~~n~l  164 (659)
                      ++|.+++..+..++++++|++|++++|.+++....... .+++|+.|++++|.+++..+..++.+++|+  .|++++|.+
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            99999877678899999999999999998842222333 589999999999999988888899999999  899999998


Q ss_pred             ccccccccCCC---------------------------------------------------CCCCEEECCCCCCCCCCC
Q 038552          165 KGKVSIDFSSL---------------------------------------------------KNLSWLNLEQNNLGMGTA  193 (659)
Q Consensus       165 ~~~~~~~l~~l---------------------------------------------------~~L~~L~l~~n~l~~~~~  193 (659)
                      .+..+..+...                                                   .+|+.|++++|.++..  
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~--  269 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI--  269 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC--
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc--
Confidence            87776655431                                                   0455666666666542  


Q ss_pred             CCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCc
Q 038552          194 NDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPD  273 (659)
Q Consensus       194 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  273 (659)
                          .+..+..+++|++|++++|.++ .+|..+..+. +|+.|++++|.+++..|..+..+++|++|++++|.+.+.++.
T Consensus       270 ----~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  343 (606)
T 3t6q_A          270 ----SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT  343 (606)
T ss_dssp             ----CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred             ----CHHHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence                2334778899999999999988 7787777765 899999999999988788899999999999999998876664


Q ss_pred             -cccCCCCCcEEEccCCCCCCCC--CccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchh-hhh
Q 038552          274 -TIGELKNLQQLSLYNNSLQGSI--PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQ-LLS  349 (659)
Q Consensus       274 -~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~  349 (659)
                       .+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. +..
T Consensus       344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (606)
T 3t6q_A          344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN  423 (606)
T ss_dssp             STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred             hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence             4889999999999999998665  778899999999999999999888889999999999999999998776554 778


Q ss_pred             cccccceeccccccccCCCccccccCCCCceeecCCCccccc---CCccccCCCCCCeEECCCCCCCCCCcccccCCCCC
Q 038552          350 ITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV---IPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI  426 (659)
Q Consensus       350 ~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  426 (659)
                      ++.++ .|++++|.+.+..|..+..+++|++|+|++|++++.   .+..+..+++|++|++++|.+.+..|..|..+++|
T Consensus       424 l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          424 LHLLK-VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM  502 (606)
T ss_dssp             CTTCC-EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccCC-EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence            88898 899999999988899999999999999999999863   33678999999999999999999889999999999


Q ss_pred             CEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-CccCCcccccccCCCCCcc
Q 038552          427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       427 ~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~  486 (659)
                      +.|++++|.+++..|..+..++.| .|++++|++++..|.. ..+++++.+++++||+.|.
T Consensus       503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            999999999999999999999999 9999999999877653 4567889999999999985

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.2e-52  Score=456.63  Aligned_cols=454  Identities=22%  Similarity=0.242  Sum_probs=409.9

Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC
Q 038552            2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL   81 (659)
Q Consensus         2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   81 (659)
                      +|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..+..|+++++|
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence            68899999999999999998889999999999999999999998889999999999999999999988778889999999


Q ss_pred             CEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCc--EEEccCCcCCcccChhccCC--------
Q 038552           82 VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLK--ALAIGGNNFFGSIPNSLSNA--------  151 (659)
Q Consensus        82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~--~L~l~~n~~~~~~~~~l~~l--------  151 (659)
                      ++|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|+  .|++++|.+++..|..+...        
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~  210 (606)
T 3t6q_A          132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG  210 (606)
T ss_dssp             CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred             cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence            9999999999875545555699999999999999955565555 899999  89999999987766554321        


Q ss_pred             -------------------------------------------CCCCEEEccCCCCccccccccCCCCCCCEEECCCCCC
Q 038552          152 -------------------------------------------SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL  188 (659)
Q Consensus       152 -------------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  188 (659)
                                                                 .+|+.|++++|.+++..+..|+.+++|++|++++|.+
T Consensus       211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  290 (606)
T 3t6q_A          211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL  290 (606)
T ss_dssp             TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred             CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence                                                       1678889999999888888899999999999999988


Q ss_pred             CCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcc-cccCCCcCeeecccccC
Q 038552          189 GMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG-IRNLVNLIALTMEINKL  267 (659)
Q Consensus       189 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l  267 (659)
                      +       .++..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+.+.+|.. +..+++|++|++++|.+
T Consensus       291 ~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  362 (606)
T 3t6q_A          291 S-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI  362 (606)
T ss_dssp             S-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred             C-------CCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence            7       3556788999999999999999987787888876 8999999999998777654 89999999999999999


Q ss_pred             CCCC--CccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCc-cCcCCCCCCEEeCCCcccccccc
Q 038552          268 HGTI--PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS-SLGNCQILRMFNASRNKLTGALP  344 (659)
Q Consensus       268 ~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~  344 (659)
                      .+..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..|
T Consensus       363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  442 (606)
T 3t6q_A          363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE  442 (606)
T ss_dssp             CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred             ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence            8765  77899999999999999999988899999999999999999999877655 48999999999999999998889


Q ss_pred             hhhhhcccccceeccccccccCC---CccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCccccc
Q 038552          345 HQLLSITTLTLSLDLSNNLLNGS---LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS  421 (659)
Q Consensus       345 ~~~~~~~~l~~~L~l~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  421 (659)
                      ..+..++.++ +|++++|.+.+.   .+..+..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..+.
T Consensus       443 ~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  521 (606)
T 3t6q_A          443 QLFDGLPALQ-HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS  521 (606)
T ss_dssp             TTTTTCTTCC-EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred             HHHhCCCCCC-EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence            9999999998 999999999863   336789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      ++++| .|++++|.+++..|..+..+++|+.+++++|++.|.++.
T Consensus       522 ~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            99999 999999999999999999999999999999999998874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.5e-51  Score=458.34  Aligned_cols=478  Identities=24%  Similarity=0.267  Sum_probs=335.9

Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC
Q 038552            2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL   81 (659)
Q Consensus         2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   81 (659)
                      +|+++++|++|++++|.+++..|..|.++++|++|++++|.+++..+.+|+++++|++|++++|.+.+..|..|+++++|
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence            46778888888888888888788888888888888888888886555578888888888888888877667788888889


Q ss_pred             CEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHh-cCCCCCcEEEccCCcCCcccChhccCC---------
Q 038552           82 VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIA-VNLPNLKALAIGGNNFFGSIPNSLSNA---------  151 (659)
Q Consensus        82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~l---------  151 (659)
                      ++|++++|.+++..|..++++++|++|++++|.+++..+..+. ..+++|+.|++++|.+++..|..+..+         
T Consensus       124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  203 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN  203 (680)
T ss_dssp             CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred             CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence            9999888888877788888888888888888888754444332 135677777777777765555433322         


Q ss_pred             ------------------CC--------------------------CCEEEccCCCCccccccccCCCCCCCEEECCCCC
Q 038552          152 ------------------SN--------------------------LEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN  187 (659)
Q Consensus       152 ------------------~~--------------------------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (659)
                                        ++                          |++|++++|.+.+..+..|+.+++|++|++++|.
T Consensus       204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (680)
T 1ziw_A          204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN  283 (680)
T ss_dssp             TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred             ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence                              22                          5555555555554444555555555555555555


Q ss_pred             CCCCCCCCccccccccCCCCCcEEEccCCcccc-----ccCh----hHHhccccCCEEEcccCcccccCCcccccCCC--
Q 038552          188 LGMGTANDLDFVTFLTNCSSLKVISLYANQFGG-----ELPH----SIANLSSTMTDFRIGANQISGTIPPGIRNLVN--  256 (659)
Q Consensus       188 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-----~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~--  256 (659)
                      +.+..      +..+..+++|+.|++++|...+     .+|.    .+..+ ++|+.|++++|.+++..+..+..+++  
T Consensus       284 l~~~~------~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~  356 (680)
T 1ziw_A          284 IQHLF------SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLK  356 (680)
T ss_dssp             BSEEC------TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTTCC
T ss_pred             cCccC------hhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHhccccCCc
Confidence            44321      1122222222222222221111     0010    11111 13444444444444444444444444  


Q ss_pred             --------------------------cCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcEEE
Q 038552          257 --------------------------LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELP  309 (659)
Q Consensus       257 --------------------------L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~  309 (659)
                                                |+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+| ..+..+++|++|+
T Consensus       357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~  436 (680)
T 1ziw_A          357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY  436 (680)
T ss_dssp             EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred             EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence                                      4444445555555556666677777777777777765444 5667777777777


Q ss_pred             ccCCccccccCccCcCCCCCCEEeCCCcccc--cccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCc
Q 038552          310 LSYNNLQGNIPSSLGNCQILRMFNASRNKLT--GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ  387 (659)
Q Consensus       310 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  387 (659)
                      +++|.+.+..+..|..+++|+.|++++|.+.  +.+|..+..++.++ .|++++|.+.+..+..+..+++|++|+|++|+
T Consensus       437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~-~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT-ILDLSNNNIANINDDMLEGLEKLEILDLQHNN  515 (680)
T ss_dssp             CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC-EEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence            7777777666667777777777887777765  56778888888888 89999999998878889999999999999999


Q ss_pred             ccccCC--------ccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCc
Q 038552          388 FSGVIP--------VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNH  459 (659)
Q Consensus       388 l~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~  459 (659)
                      +++..+        ..+.++++|++|+|++|.+....+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|.
T Consensus       516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence            886522        237889999999999999996666679999999999999999998777888999999999999999


Q ss_pred             CcccCCCC-C-ccCCcccccccCCCCCccc
Q 038552          460 FEGEVPKK-G-VFSNKTKISLQGNVKLCGG  487 (659)
Q Consensus       460 l~~~~p~~-~-~~~~~~~~~~~~n~~lc~~  487 (659)
                      +++..|.. + .+++++.+++++||+.|..
T Consensus       596 l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             CCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             CCccChhHhcccccccCEEEccCCCcccCC
Confidence            98866542 2 4688999999999999964

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-51  Score=452.03  Aligned_cols=469  Identities=21%  Similarity=0.189  Sum_probs=397.6

Q ss_pred             CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552            7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV   86 (659)
Q Consensus         7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   86 (659)
                      +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            67999999999999888888999999999999999999888889999999999999999998888999999999999999


Q ss_pred             ecCcCCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCC----EEEccC
Q 038552           87 GENRFSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLE----ILDLTS  161 (659)
Q Consensus        87 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~  161 (659)
                      ++|.+++..+..++++++|++|++++|.+++ .+|..+. .+++|++|++++|.+++..+..++.+++|+    +|++++
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            9999987777889999999999999999874 5677776 899999999999999887777777766654    899999


Q ss_pred             CCCccccccccCCCCCCCEEECCCCCCCCC--------------------------------------------------
Q 038552          162 NQLKGKVSIDFSSLKNLSWLNLEQNNLGMG--------------------------------------------------  191 (659)
Q Consensus       162 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--------------------------------------------------  191 (659)
                      |.+++..+..+... +|+.|++++|.+.+.                                                  
T Consensus       191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  269 (606)
T 3vq2_A          191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT  269 (606)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred             CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence            99887666666554 788888888865410                                                  


Q ss_pred             -CCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC
Q 038552          192 -TANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT  270 (659)
Q Consensus       192 -~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  270 (659)
                       ...-......+..+++|+.|++++|.+. .+| .+..+. +++.|++++|.+ +.+| .+ .+++|+.|++++|...+.
T Consensus       270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~-~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~  343 (606)
T 3vq2_A          270 YTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHF-KWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS  343 (606)
T ss_dssp             CCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTC-CCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred             ccccccccccccccCCCCCEEEecCccch-hhh-hccccc-cCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence             0000011122566788999999988875 455 455544 799999999998 5777 44 889999999999965544


Q ss_pred             CCccccCCCCCcEEEccCCCCCCC--CCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccc-hhh
Q 038552          271 IPDTIGELKNLQQLSLYNNSLQGS--IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP-HQL  347 (659)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~  347 (659)
                      .  .+..+++|++|++++|.+.+.  .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+
T Consensus       344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  420 (606)
T 3vq2_A          344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF  420 (606)
T ss_dssp             C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred             h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence            4  567899999999999999865  47888999999999999999884 66889999999999999999998777 678


Q ss_pred             hhcccccceeccccccccCCCccccccCCCCceeecCCCcccc-cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCC
Q 038552          348 LSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG-VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI  426 (659)
Q Consensus       348 ~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  426 (659)
                      ..++.++ .|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+.++++|
T Consensus       421 ~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          421 LSLEKLL-YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TTCTTCC-EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hccccCC-EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            8899998 99999999999999999999999999999999997 478899999999999999999999999999999999


Q ss_pred             CEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccC-CcccccccCCCCCccc
Q 038552          427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFS-NKTKISLQGNVKLCGG  487 (659)
Q Consensus       427 ~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~-~~~~~~~~~n~~lc~~  487 (659)
                      +.|++++|.+++.+|..+..+++|+.|++++|+++...+....++ +++.+++++||+.|..
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCC
Confidence            999999999999999999999999999999999985433334444 5899999999999954

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.2e-51  Score=461.03  Aligned_cols=471  Identities=19%  Similarity=0.204  Sum_probs=378.5

Q ss_pred             CCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccc-cccccCCCCCcEEEccCCccCcccccccCCCCCCCEE
Q 038552            6 YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQL-PDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDL   84 (659)
Q Consensus         6 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   84 (659)
                      .+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|..|+++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            468999999999999888999999999999999999665555 7889999999999999999988889999999999999


Q ss_pred             EeecCcCCccCccc--ccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCC--CCCCEEEcc
Q 038552           85 NVGENRFSGMFPRS--ICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNA--SNLEILDLT  160 (659)
Q Consensus        85 ~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~  160 (659)
                      ++++|.+++.+|..  ++++++|++|++++|.+++..+...+..+++|++|++++|.+++..+..+..+  ++|+.|+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            99999998766665  89999999999999999855443333489999999999999998888888877  899999999


Q ss_pred             CCCCccccccccCCCCC------CCEEECCCCCCCCCCCCCcc------------------------------ccccccC
Q 038552          161 SNQLKGKVSIDFSSLKN------LSWLNLEQNNLGMGTANDLD------------------------------FVTFLTN  204 (659)
Q Consensus       161 ~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~~------------------------------~~~~l~~  204 (659)
                      +|.+.+..+..++.+.+      |+.|++++|.+++.....+.                              ....+..
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence            99998888877776665      99999999876543221110                              0011111


Q ss_pred             --CCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCc
Q 038552          205 --CSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQ  282 (659)
Q Consensus       205 --~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  282 (659)
                        +++|+.|++++|.+.+..|..+..+. +|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA  341 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred             cccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence              36788999998888877677676665 788999999988888888888889999999999988888888888899999


Q ss_pred             EEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEE--------------------eCCCcccccc
Q 038552          283 QLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMF--------------------NASRNKLTGA  342 (659)
Q Consensus       283 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L--------------------~l~~n~l~~~  342 (659)
                      .|++++|.+.+..+..|..+++|++|++++|.+++. +    .+++|+.|                    ++++|++.+.
T Consensus       342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL  416 (844)
T ss_dssp             EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred             EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence            999999988877777888888999999988887732 1    13444444                    4444444422


Q ss_pred             -cchhhhhcccccceeccccccccCCCcc-ccccCCCCceeecCCCccc-----ccCCccccCCCCCCeEECCCCCCCCC
Q 038552          343 -LPHQLLSITTLTLSLDLSNNLLNGSLPL-QVGNLKNLVKLDISGNQFS-----GVIPVTLSACVSLEYLNISRNFFHGI  415 (659)
Q Consensus       343 -~~~~~~~~~~l~~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~  415 (659)
                       .+..+..++.++ .|++++|.+.+..+. .+..+++|++|+|++|.++     +..+..|.++++|++|+|++|.+++.
T Consensus       417 ~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  495 (844)
T 3j0a_A          417 DILYFLLRVPHLQ-ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL  495 (844)
T ss_dssp             TTHHHHTTCTTCC-EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred             chhhhhhcCCccc-eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc
Confidence             112244677777 888888888765433 3566788999999999886     34456688899999999999999988


Q ss_pred             CcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCccc
Q 038552          416 IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGG  487 (659)
Q Consensus       416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  487 (659)
                      .|..|.++++|+.|+|++|.+++..|..+.  ++|+.|++++|++++..|..  +.++..+++++||+.|..
T Consensus       496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICEC  563 (844)
T ss_dssp             CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred             ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccc
Confidence            888899999999999999999987766665  78999999999999888753  678899999999999954

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.2e-50  Score=438.01  Aligned_cols=446  Identities=20%  Similarity=0.200  Sum_probs=389.1

Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC
Q 038552            2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL   81 (659)
Q Consensus         2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   81 (659)
                      +|+++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..|+++++|
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence            58899999999999999998889999999999999999999998889999999999999999999987777889999999


Q ss_pred             CEEEeecCcCCc-cCcccccCCCCCCEEeccCccccccChHHHhcCCCC----CcEEEccCCcCCcccChhccCCCCCCE
Q 038552           82 VDLNVGENRFSG-MFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPN----LKALAIGGNNFFGSIPNSLSNASNLEI  156 (659)
Q Consensus        82 ~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~----L~~L~l~~n~~~~~~~~~l~~l~~L~~  156 (659)
                      ++|++++|.+++ .+|..++++++|++|++++|.+++..|..+. .+.+    ++++++++|.+++..+..+... +|+.
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~  208 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHE  208 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEE
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccccccceeeccCCCcceeCcccccCc-eeee
Confidence            999999999986 5799999999999999999999855554443 3443    4478888888876555544443 7888


Q ss_pred             EEccCCCCc----------------------------------------------------------cccccccCCCCCC
Q 038552          157 LDLTSNQLK----------------------------------------------------------GKVSIDFSSLKNL  178 (659)
Q Consensus       157 L~l~~n~l~----------------------------------------------------------~~~~~~l~~l~~L  178 (659)
                      |++++|.+.                                                          +..+. +..+++|
T Consensus       209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L  287 (606)
T 3vq2_A          209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANV  287 (606)
T ss_dssp             EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTC
T ss_pred             eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCC
Confidence            888777553                                                          22333 6677889


Q ss_pred             CEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcC
Q 038552          179 SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLI  258 (659)
Q Consensus       179 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  258 (659)
                      +.|++++|.+..       ++ .+..+++|++|++++|.+ +.+|..  .+. +|+.|++++|...+.+  .+..+++|+
T Consensus       288 ~~L~l~~~~~~~-------l~-~l~~~~~L~~L~l~~n~l-~~lp~~--~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~  353 (606)
T 3vq2_A          288 SAMSLAGVSIKY-------LE-DVPKHFKWQSLSIIRCQL-KQFPTL--DLP-FLKSLTLTMNKGSISF--KKVALPSLS  353 (606)
T ss_dssp             SEEEEESCCCCC-------CC-CCCTTCCCSEEEEESCCC-SSCCCC--CCS-SCCEEEEESCSSCEEC--CCCCCTTCC
T ss_pred             CEEEecCccchh-------hh-hccccccCCEEEcccccC-cccccC--CCC-ccceeeccCCcCccch--hhccCCCCC
Confidence            999999988753       22 678899999999999999 688844  444 8999999999666544  567999999


Q ss_pred             eeecccccCCCC--CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccC-ccCcCCCCCCEEeCC
Q 038552          259 ALTMEINKLHGT--IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIP-SSLGNCQILRMFNAS  335 (659)
Q Consensus       259 ~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~  335 (659)
                      .|++++|.+++.  .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|+.|+++
T Consensus       354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  432 (606)
T 3vq2_A          354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS  432 (606)
T ss_dssp             EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred             EEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence            999999999876  47889999999999999999884 66889999999999999999998777 689999999999999


Q ss_pred             CcccccccchhhhhcccccceeccccccccC-CCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCC
Q 038552          336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNG-SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG  414 (659)
Q Consensus       336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  414 (659)
                      +|.+.+..|..+..++.++ .|++++|.+.+ .+|..+..+++|++|+|++|++++..|..+..+++|++|++++|++.+
T Consensus       433 ~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  511 (606)
T 3vq2_A          433 YTNTKIDFDGIFLGLTSLN-TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF  511 (606)
T ss_dssp             TSCCEECCTTTTTTCTTCC-EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCCccchhhhcCCCCCC-EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence            9999999999999999998 99999999997 478889999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCCEEECCCCcccccchhhhcCCC-CCCeeeCcCCcCcccCCCC
Q 038552          415 IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLS-FMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~l~l~~n~l~~~~p~~  467 (659)
                      ..|..+.++++|+.|++++|+++ .+|..+..++ +|+.+++++|++.+.++..
T Consensus       512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            99999999999999999999998 5666688887 5999999999999988853

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.1e-49  Score=437.29  Aligned_cols=466  Identities=22%  Similarity=0.256  Sum_probs=344.6

Q ss_pred             CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552            7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV   86 (659)
Q Consensus         7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   86 (659)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..+..|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            58999999999999887888999999999999999999888999999999999999999997665567999999999999


Q ss_pred             ecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhcc--CCCCCCEEEccCCCC
Q 038552           87 GENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLS--NASNLEILDLTSNQL  164 (659)
Q Consensus        87 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l  164 (659)
                      ++|.+++..|..|+++++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+.  .+++|+.|++++|.+
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhc-ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            99999977778999999999999999999865555554 799999999999999987776654  568999999999999


Q ss_pred             ccccccccCCCC---------------------------CCCEEECCCCCCCCCCCCCccccccccCCC--CCcEEEccC
Q 038552          165 KGKVSIDFSSLK---------------------------NLSWLNLEQNNLGMGTANDLDFVTFLTNCS--SLKVISLYA  215 (659)
Q Consensus       165 ~~~~~~~l~~l~---------------------------~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~  215 (659)
                      ++..+..+..++                           +|+.|++++|.+.+.      .+..+..++  +|++|++++
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~------~~~~~~~l~~~~L~~L~Ls~  257 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT------SNTTFLGLKWTNLTMLDLSY  257 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE------CTTTTGGGGGSCCCEEECTT
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc------ChhHhhccCcCCCCEEECCC
Confidence            887777665543                           455555555555442      122333332  377777777


Q ss_pred             CccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC-----CCCc----cccCCCCCcEEEc
Q 038552          216 NQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG-----TIPD----TIGELKNLQQLSL  286 (659)
Q Consensus       216 n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~----~~~~~~~L~~L~l  286 (659)
                      |.+.+..|..+..+. +|+.|++++|.+++..|..+..+++|+.|++++|...+     .+|.    .|..+++|++|++
T Consensus       258 n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l  336 (680)
T 1ziw_A          258 NNLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM  336 (680)
T ss_dssp             SCCCEECTTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred             CCcCccCcccccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence            766655555555554 67777777776666666555555555555555443322     1111    3445555556666


Q ss_pred             cCCCCCCCCCccccCCCCCcEEE----------------------------ccCCccccccCccCcCCCCCCEEeCCCcc
Q 038552          287 YNNSLQGSIPSSLGNLTKLVELP----------------------------LSYNNLQGNIPSSLGNCQILRMFNASRNK  338 (659)
Q Consensus       287 ~~n~l~~~~~~~~~~l~~L~~L~----------------------------l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  338 (659)
                      ++|.+.+..+..|..+++|++|+                            +++|.+++..|..+..+++|+.|++++|.
T Consensus       337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  416 (680)
T 1ziw_A          337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE  416 (680)
T ss_dssp             CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence            66655555555555554444444                            44555555667778888899999999998


Q ss_pred             cccccc-hhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccc--ccCCccccCCCCCCeEECCCCCCCCC
Q 038552          339 LTGALP-HQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS--GVIPVTLSACVSLEYLNISRNFFHGI  415 (659)
Q Consensus       339 l~~~~~-~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~  415 (659)
                      +.+.+| ..+..++.++ +|++++|.+.+..+..+..+++|++|++++|.+.  +..|..+..+++|++|++++|.+++.
T Consensus       417 l~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i  495 (680)
T 1ziw_A          417 IGQELTGQEWRGLENIF-EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI  495 (680)
T ss_dssp             CEEECCSGGGTTCTTCC-EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred             CccccCcccccCccccc-EEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence            887666 5677788887 8888888888777777888888888888888775  45677778888888888888888877


Q ss_pred             CcccccCCCCCCEEECCCCcccccch--------hhhcCCCCCCeeeCcCCcCcccCCC--CCccCCcccccccCCC
Q 038552          416 IPLSLSSLKSIKEFNVSSNNLSGLIP--------EFLKNLSFMEFLDLSYNHFEGEVPK--KGVFSNKTKISLQGNV  482 (659)
Q Consensus       416 ~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~l~~L~~l~l~~n~l~~~~p~--~~~~~~~~~~~~~~n~  482 (659)
                      .+..|.++++|+.|++++|.+++..+        ..+..+++|+.|++++|.+. .+|.  .....+++.+++++|.
T Consensus       496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~  571 (680)
T 1ziw_A          496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNN  571 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCC
Confidence            77777888888888888888775422        23567778888888888777 3443  3455677777777764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-49  Score=429.56  Aligned_cols=448  Identities=21%  Similarity=0.226  Sum_probs=290.6

Q ss_pred             CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552            7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV   86 (659)
Q Consensus         7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   86 (659)
                      +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+.+|+++++|++|++++|.+.+..|..|+++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            47999999999999888889999999999999999999888888999999999999999998877889999999999999


Q ss_pred             ecCcCCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCC----CEEEccC
Q 038552           87 GENRFSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNL----EILDLTS  161 (659)
Q Consensus        87 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~  161 (659)
                      ++|.+++..+..++++++|++|++++|.+++ .+|..+. .+++|++|++++|.+++..+..++.+++|    +.+++++
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            9999986666679999999999999999875 4677776 79999999999999998878888888888    8999999


Q ss_pred             CCCccccccccCCCCCCCEEECCCCCCCCC-------------------------------CCCC---------------
Q 038552          162 NQLKGKVSIDFSSLKNLSWLNLEQNNLGMG-------------------------------TAND---------------  195 (659)
Q Consensus       162 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-------------------------------~~~~---------------  195 (659)
                      |.+.+..+..+... +|+.|++++|.....                               ....               
T Consensus       187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            99998888777765 789998887632210                               0000               


Q ss_pred             ------ccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC
Q 038552          196 ------LDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG  269 (659)
Q Consensus       196 ------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  269 (659)
                            ...+..+..+++|+.|++++|.+. .+|..+...  +++.|++++|.+. .+|.  ..+++|+.|++++|.+.+
T Consensus       266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred             cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence                  001122333445555555555444 344443333  4555555555544 3332  244455555555555444


Q ss_pred             CCCccccCCCCCcEEEccCCCCCCCC--CccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccc-hh
Q 038552          270 TIPDTIGELKNLQQLSLYNNSLQGSI--PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP-HQ  346 (659)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~  346 (659)
                      ..+.  ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+..+ ..
T Consensus       340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCT
T ss_pred             cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhh
Confidence            3332  34555555555555554322  3444555555555555555543222 25555555555555555554333 23


Q ss_pred             hhhcccccceeccccccccCCCccccccCCCCceeecCCCccc-ccCCccccCCCCCCeEECCCCCCCCCCcccccCCCC
Q 038552          347 LLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS-GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKS  425 (659)
Q Consensus       347 ~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  425 (659)
                      +..++.++ .|++++|.+.+..|..+..+++|++|+|++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++
T Consensus       417 ~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          417 FLSLRNLI-YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTCTTCC-EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhcCCCCC-EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            44455554 5555555555555555555555555555555554 344555555555555555555555555555555555


Q ss_pred             CCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          426 IKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       426 L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      |+.|++++|.+++..|..+..+++|+.|++++|++.|.+|.
T Consensus       496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            55555555555555445555555555555555555555553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.7e-47  Score=411.29  Aligned_cols=457  Identities=21%  Similarity=0.238  Sum_probs=382.4

Q ss_pred             CCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552            9 LIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE   88 (659)
Q Consensus         9 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   88 (659)
                      .+.++-++..++ .+|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            456777777777 5676554  5799999999999988888999999999999999999888788999999999999999


Q ss_pred             CcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCc-ccChhccCCCCCCEEEccCCCCccc
Q 038552           89 NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFG-SIPNSLSNASNLEILDLTSNQLKGK  167 (659)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~  167 (659)
                      |.+++..|..|+++++|++|++++|.++ .++......+++|++|++++|.+++ .+|..++++++|++|++++|.+++.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             CcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            9999888899999999999999999998 5554333489999999999999987 4689999999999999999999988


Q ss_pred             cccccCCCCCC----CEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCC---------------------------
Q 038552          168 VSIDFSSLKNL----SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN---------------------------  216 (659)
Q Consensus       168 ~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n---------------------------  216 (659)
                      .+..++.+.+|    +.+++++|.+.....      ..+..+ +|+.|++++|                           
T Consensus       165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~------~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  237 (570)
T 2z63_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP------GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  237 (570)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECT------TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred             cHHHccchhccchhhhhcccCCCCceecCH------HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence            88888888888    899999999876432      222222 5667766665                           


Q ss_pred             -------------------------------ccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccc
Q 038552          217 -------------------------------QFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEIN  265 (659)
Q Consensus       217 -------------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  265 (659)
                                                     .+.+..|..+..+. +++.+++++|.++ .+|..+..+ +|+.|++++|
T Consensus       238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n  314 (570)
T 2z63_A          238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNC  314 (570)
T ss_dssp             CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESC
T ss_pred             cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccC
Confidence                                           22333444444444 7888888888777 477777777 8888888888


Q ss_pred             cCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCcccccc--CccCcCCCCCCEEeCCCccccccc
Q 038552          266 KLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNI--PSSLGNCQILRMFNASRNKLTGAL  343 (659)
Q Consensus       266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~  343 (659)
                      .+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..
T Consensus       315 ~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  389 (570)
T 2z63_A          315 KFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS  389 (570)
T ss_dssp             BCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred             ccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence            877 4444  4678888888888887765554  67899999999999988654  677888999999999999998544


Q ss_pred             chhhhhcccccceeccccccccCCCc-cccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCC-CCCccccc
Q 038552          344 PHQLLSITTLTLSLDLSNNLLNGSLP-LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH-GIIPLSLS  421 (659)
Q Consensus       344 ~~~~~~~~~l~~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~  421 (659)
                      + .+..++.++ .|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. +.+|..+.
T Consensus       390 ~-~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~  467 (570)
T 2z63_A          390 S-NFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  467 (570)
T ss_dssp             E-EEETCTTCC-EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             c-cccccCCCC-EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence            4 488889998 89999999987766 56889999999999999999989999999999999999999997 57888999


Q ss_pred             CCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-CccCCcccccccCCCCCcc
Q 038552          422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~  486 (659)
                      .+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|.. ..+++++.+++++|++.|.
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            9999999999999999988999999999999999999999876653 5678889999999999885

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-47  Score=430.32  Aligned_cols=446  Identities=19%  Similarity=0.217  Sum_probs=374.3

Q ss_pred             CCCCCCCCCEEEccCCcccccC-chhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccc--cCCC
Q 038552            2 NLSRYSNLIELRVSKNKLEGQI-PEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTT--LGLL   78 (659)
Q Consensus         2 ~~~~~~~L~~L~ls~n~~~~~~-~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l   78 (659)
                      +|+++++|++|+|++|...+.+ |.+|.++++|++|++++|.+.+..|.+|.++++|++|+|++|.+.+.+|..  |+++
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            5889999999999999665555 888999999999999999999888999999999999999999998766665  8999


Q ss_pred             CCCCEEEeecCcCCccCc-ccccCCCCCCEEeccCccccccChHHHhcCC--CCCcEEEccCCcCCcccChhccCCCC--
Q 038552           79 RNLVDLNVGENRFSGMFP-RSICNISSLEWIYLPFNRFSGSLPLDIAVNL--PNLKALAIGGNNFFGSIPNSLSNASN--  153 (659)
Q Consensus        79 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~--  153 (659)
                      ++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+. .+  ++|+.|++++|.+.+..|..+..+++  
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCcc
Confidence            999999999999987655 5799999999999999999876676665 45  78999999999998888877777665  


Q ss_pred             ----CCEEEccCCCCccccccccC------------------------------------C--CCCCCEEECCCCCCCCC
Q 038552          154 ----LEILDLTSNQLKGKVSIDFS------------------------------------S--LKNLSWLNLEQNNLGMG  191 (659)
Q Consensus       154 ----L~~L~l~~n~l~~~~~~~l~------------------------------------~--l~~L~~L~l~~n~l~~~  191 (659)
                          |+.|++++|.+.+..+..+.                                    .  .++|+.|++++|.+.. 
T Consensus       202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-  280 (844)
T 3j0a_A          202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-  280 (844)
T ss_dssp             TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-
T ss_pred             ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-
Confidence                99999999977654443322                                    1  2678999999988865 


Q ss_pred             CCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCC
Q 038552          192 TANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTI  271 (659)
Q Consensus       192 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  271 (659)
                           ..+..+..+++|+.|++++|.+.+..|..+..+. +|+.|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus       281 -----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~  354 (844)
T 3j0a_A          281 -----LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ  354 (844)
T ss_dssp             -----ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred             -----cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence                 3345677889999999999999887787777776 8999999999999888889999999999999999998888


Q ss_pred             CccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCc----------------------cCcCCCCC
Q 038552          272 PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS----------------------SLGNCQIL  329 (659)
Q Consensus       272 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~~~~L  329 (659)
                      +..|..+++|++|++++|.+.+. +    .+++|+.|++++|.+. .+|.                      .+..+++|
T Consensus       355 ~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L  428 (844)
T 3j0a_A          355 DQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHL  428 (844)
T ss_dssp             SSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred             hhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCcc
Confidence            88899999999999999988742 2    2566666666666655 2222                      23478999


Q ss_pred             CEEeCCCcccccccch-hhhhcccccceecccccccc-----CCCccccccCCCCceeecCCCcccccCCccccCCCCCC
Q 038552          330 RMFNASRNKLTGALPH-QLLSITTLTLSLDLSNNLLN-----GSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE  403 (659)
Q Consensus       330 ~~L~l~~n~l~~~~~~-~~~~~~~l~~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  403 (659)
                      +.|++++|++++..+. .+..++.++ .|++++|.+.     +..+..+..+++|++|+|++|++++..|..|..+++|+
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  507 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLE-QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR  507 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCC-BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred             ceeeCCCCcccccccccccccCCccc-cccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh
Confidence            9999999999865443 344567787 8999999997     44456788999999999999999999999999999999


Q ss_pred             eEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552          404 YLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       404 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~  467 (659)
                      +|+|++|++++..+..+.  ++|+.|++++|.+++.+|..+   ++|+.+++++|++.|.++..
T Consensus       508 ~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          508 GLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             EEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred             eeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence            999999999987777665  899999999999999988765   47899999999999988753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.1e-48  Score=426.25  Aligned_cols=433  Identities=21%  Similarity=0.291  Sum_probs=252.3

Q ss_pred             CCCEEEccCCcccccCchhhcCCCCCcEEeccccCC------Cc------cccccccCCCCCcEEEccCCccCccccccc
Q 038552            8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYL------TG------QLPDFVGNLSALKVFYIIGNSLGGKIPTTL   75 (659)
Q Consensus         8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~------~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~   75 (659)
                      +++.|+|+++.+.|.+|.+++++++|++|++++|.+      .+      .+|...  +..|+ ++++++.+.+..|..+
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~  158 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDF  158 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGS
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhH
Confidence            566667777766666666677777777777766654      11      222222  33344 4444444444444333


Q ss_pred             CC-------------------CCCCCEEEee--cCcCCccCcccccCCCCCCEEeccCcccccc----------------
Q 038552           76 GL-------------------LRNLVDLNVG--ENRFSGMFPRSICNISSLEWIYLPFNRFSGS----------------  118 (659)
Q Consensus        76 ~~-------------------l~~L~~L~l~--~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~----------------  118 (659)
                      ..                   ...++.+.+.  .|.+++ +|..++++++|++|++++|.+++.                
T Consensus       159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence            31                   0111111111  345555 566666666666666666666643                


Q ss_pred             -ChHHHh-cCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCC-Ccc-ccccccCCC------CCCCEEECCCCCC
Q 038552          119 -LPLDIA-VNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ-LKG-KVSIDFSSL------KNLSWLNLEQNNL  188 (659)
Q Consensus       119 -~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l  188 (659)
                       +|..++ ..+++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+      ++|++|++++|.+
T Consensus       238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence             555442 145666666666666666666666666666666666665 665 555555544      6666666666665


Q ss_pred             CCCCCCCccccc--cccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCC-cCeeecccc
Q 038552          189 GMGTANDLDFVT--FLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVN-LIALTMEIN  265 (659)
Q Consensus       189 ~~~~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n  265 (659)
                      +       .++.  .+..+++|++|++++|.+.|.+| .+..+. +|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus       318 ~-------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          318 K-------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             S-------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred             C-------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence            4       2333  45566666666666666666666 444444 5666666666666 56666666666 666666666


Q ss_pred             cCCCCCCccccCCC--CCcEEEccCCCCCCCCCcccc-------CCCCCcEEEccCCccccccCccCcCCCCCCEEeCCC
Q 038552          266 KLHGTIPDTIGELK--NLQQLSLYNNSLQGSIPSSLG-------NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR  336 (659)
Q Consensus       266 ~l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  336 (659)
                      .++ .+|..+..+.  +|++|++++|.+.+..|..+.       .+++|++|++++|.++...+..+..+++|+.|++++
T Consensus       388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence            666 5555555433  666666666666666666665       556666666666666632222344566666666666


Q ss_pred             cccccccchhhhhcc--------cccceeccccccccCCCccccc--cCCCCceeecCCCcccccCCccccCCCCCCeEE
Q 038552          337 NKLTGALPHQLLSIT--------TLTLSLDLSNNLLNGSLPLQVG--NLKNLVKLDISGNQFSGVIPVTLSACVSLEYLN  406 (659)
Q Consensus       337 n~l~~~~~~~~~~~~--------~l~~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  406 (659)
                      |.++ .+|.......        .++ .|++++|.+. .+|..+.  .+++|++|+|++|++++ +|..+..+++|++|+
T Consensus       467 N~l~-~i~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~  542 (636)
T 4eco_A          467 NMLT-EIPKNSLKDENENFKNTYLLT-SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG  542 (636)
T ss_dssp             SCCS-BCCSSSSEETTEECTTGGGCC-EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred             CCCC-CcCHHHhccccccccccCCcc-EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence            6666 4554433322        454 5666666666 4555554  66666666666666665 566666666666666


Q ss_pred             C------CCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc
Q 038552          407 I------SRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       407 l------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~  462 (659)
                      |      ++|.+.+.+|..+..+++|+.|++++|.+ +.+|..+.  ++|+.|++++|++..
T Consensus       543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            6      34555566666666666666666666666 34454433  566666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.5e-46  Score=404.64  Aligned_cols=465  Identities=19%  Similarity=0.197  Sum_probs=383.4

Q ss_pred             CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552            7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV   86 (659)
Q Consensus         7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   86 (659)
                      ++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            58999999999999888899999999999999999999888899999999999999999998877778999999999999


Q ss_pred             ecCcCCc-cCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCc
Q 038552           87 GENRFSG-MFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLK  165 (659)
Q Consensus        87 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  165 (659)
                      ++|.+++ ..|..++++++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..++++++|++|++++|.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            9999986 357789999999999999998555777544458999999999999999989999999999999999999887


Q ss_pred             cccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhc---cccCCEEEcccCc
Q 038552          166 GKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANL---SSTMTDFRIGANQ  242 (659)
Q Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~~~  242 (659)
                      ......+..+++|++|++++|.+++....   .......+++|+.|++++|.+.+..+..+...   ...++.+++++|.
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARFQFS---PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTCCCC---CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             ccchhhHhhcccccEEEccCCcccccccc---ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            54444456789999999999998764321   11233467899999999999887666555432   2378999999998


Q ss_pred             ccccC------CcccccCCCcCeeecccccCCCC-----CCccccCCCCCcEEEccCCCCCCCCCccc-cCCCCCcEEEc
Q 038552          243 ISGTI------PPGIRNLVNLIALTMEINKLHGT-----IPDTIGELKNLQQLSLYNNSLQGSIPSSL-GNLTKLVELPL  310 (659)
Q Consensus       243 ~~~~~------~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l  310 (659)
                      +.+..      ...+..+++|+.+++.++.+...     ++..+...++|+.|++++|.+. .+|..+ ..+++|++|++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~L  341 (549)
T 2z81_A          263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL  341 (549)
T ss_dssp             EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEEC
T ss_pred             ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEc
Confidence            77531      12356778899999988876532     1222344678999999999987 666655 57999999999


Q ss_pred             cCCccccccC---ccCcCCCCCCEEeCCCcccccccc--hhhhhcccccceeccccccccCCCccccccCCCCceeecCC
Q 038552          311 SYNNLQGNIP---SSLGNCQILRMFNASRNKLTGALP--HQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISG  385 (659)
Q Consensus       311 ~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  385 (659)
                      ++|.+.+.+|   ..++.+++|+.|++++|++++..+  ..+..++.++ .|++++|++. .+|..+..+++|++|++++
T Consensus       342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~-~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~  419 (549)
T 2z81_A          342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT-SLDISRNTFH-PMPDSCQWPEKMRFLNLSS  419 (549)
T ss_dssp             CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC-EEECTTCCCC-CCCSCCCCCTTCCEEECTT
T ss_pred             cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC-EEECCCCCCc-cCChhhcccccccEEECCC
Confidence            9999997664   347889999999999999985432  4578889998 9999999998 6788899999999999999


Q ss_pred             CcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          386 NQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       386 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      |.+++ +|..+  .++|++|++++|++++.+    ..+++|+.|++++|+++ .+|. ...+++|+.|++++|++++..|
T Consensus       420 N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          420 TGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             SCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred             CCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence            99974 34333  268999999999998653    57899999999999998 4565 4678999999999999998777


Q ss_pred             C-CCccCCcccccccCCCCCcc
Q 038552          466 K-KGVFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       466 ~-~~~~~~~~~~~~~~n~~lc~  486 (659)
                      . ...+.+++.+++++|++.|.
T Consensus       491 ~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          491 GIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             TGGGGCTTCCEEECCSSCBCCC
T ss_pred             HHHhcCcccCEEEecCCCccCC
Confidence            5 35678899999999999884

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.8e-46  Score=399.30  Aligned_cols=437  Identities=19%  Similarity=0.235  Sum_probs=258.8

Q ss_pred             EEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCc
Q 038552           11 ELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENR   90 (659)
Q Consensus        11 ~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   90 (659)
                      +||+++|.++ .+|..+.  ++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..|+++++|++|++++|.
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            4555555554 3444433  455555555555554444455555555555555555544445555555555555555555


Q ss_pred             CCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCC--CEEEccCCCC--c
Q 038552           91 FSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNL--EILDLTSNQL--K  165 (659)
Q Consensus        91 l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~  165 (659)
                      ++ .+|..  .+++|++|++++|.+++ .+|..+. .+++|++|++++|.+++   ..+..+++|  +.|++++|.+  .
T Consensus        81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ee-ecCcc--ccCCccEEeccCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            54 23333  45555555555555543 2333333 45555555555555443   233444444  5555555554  3


Q ss_pred             cccccc--------------------------cCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccc
Q 038552          166 GKVSID--------------------------FSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG  219 (659)
Q Consensus       166 ~~~~~~--------------------------l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  219 (659)
                      +..|..                          +..+++|+.+++++|.............+.+..+++|+.|++++|.+.
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  233 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT  233 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence            333333                          344555555555555310000000011224556667777777766665


Q ss_pred             cccChhHHhc--cccCCEEEcccCcccccCCccc-----ccCCCcCeeecccccCCCCCC-ccccCC---CCCcEEEccC
Q 038552          220 GELPHSIANL--SSTMTDFRIGANQISGTIPPGI-----RNLVNLIALTMEINKLHGTIP-DTIGEL---KNLQQLSLYN  288 (659)
Q Consensus       220 ~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~~---~~L~~L~l~~  288 (659)
                      +..+..+...  ..+++.|++++|.+++.+|..+     ..++.|+.+++++|.+  .+| ..+..+   .+|+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~  311 (520)
T 2z7x_B          234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG  311 (520)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred             HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence            4333222211  1267777777777777777776     7777777777777777  344 334333   5677777777


Q ss_pred             CCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCccccc--ccchhhhhcccccceeccccccccC
Q 038552          289 NSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG--ALPHQLLSITTLTLSLDLSNNLLNG  366 (659)
Q Consensus       289 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~L~l~~n~l~~  366 (659)
                      |.+....  .+..+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|..+..++.++ .|++++|.+.+
T Consensus       312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~-~L~Ls~N~l~~  388 (520)
T 2z7x_B          312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ-QLDISQNSVSY  388 (520)
T ss_dssp             SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC-EEECCSSCCBC
T ss_pred             Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCC-EEECCCCcCCc
Confidence            7765332  12567777888888887777777777777778888888877775  4556677777777 77777777776


Q ss_pred             CCcc-ccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhc
Q 038552          367 SLPL-QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLK  445 (659)
Q Consensus       367 ~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  445 (659)
                      .+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus       389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~  465 (520)
T 2z7x_B          389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD  465 (520)
T ss_dssp             CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence            4554 366777777777777777766665544  67777777777777 5666666777777777777777744333467


Q ss_pred             CCCCCCeeeCcCCcCcccCC
Q 038552          446 NLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       446 ~l~~L~~l~l~~n~l~~~~p  465 (659)
                      .+++|+.|++++|++.|.++
T Consensus       466 ~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          466 RLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcccEEECcCCCCcccCC
Confidence            77777777777777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.3e-46  Score=412.15  Aligned_cols=411  Identities=21%  Similarity=0.246  Sum_probs=225.6

Q ss_pred             CCCCEEEccCCcccccCchhhcCCCCCcEEec-cccCCCccccccc----------------------------------
Q 038552            7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAI-DFNYLTGQLPDFV----------------------------------   51 (659)
Q Consensus         7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l-s~~~~~~~~~~~~----------------------------------   51 (659)
                      .+++.|+|+++.+.|.+|.+|+++++|++|+| ++|.+.|..|-..                                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            35777888888888888888888888888888 6666554422110                                  


Q ss_pred             -----------------cCCCCCcEEEccC--CccCcccccccCCCCCCCEEEeecCcCCc-----------------cC
Q 038552           52 -----------------GNLSALKVFYIIG--NSLGGKIPTTLGLLRNLVDLNVGENRFSG-----------------MF   95 (659)
Q Consensus        52 -----------------~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~   95 (659)
                                       .....++.+.+..  |.+.+ +|..|+++++|++|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                             0111222222222  44444 55556666666666666666655                 25


Q ss_pred             ccccc--CCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCc-CCc-ccChhccCCC-------CCCEEEccCCCC
Q 038552           96 PRSIC--NISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNN-FFG-SIPNSLSNAS-------NLEILDLTSNQL  164 (659)
Q Consensus        96 ~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~l  164 (659)
                      |..++  ++++|++|++++|.+.+.+|..+. .+++|+.|++++|+ +++ .+|..+++++       +|+.|++++|.+
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            55544  555555555555555555554444 45555555555554 544 4444443333       555555555555


Q ss_pred             cccccc--ccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCc
Q 038552          165 KGKVSI--DFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ  242 (659)
Q Consensus       165 ~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~  242 (659)
                      + .+|.  .++++++|+.|++++|.++.       ++ .+..+++|+.|++++|.+.                       
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-------lp-~~~~L~~L~~L~Ls~N~l~-----------------------  608 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVRH-------LE-AFGTNVKLTDLKLDYNQIE-----------------------  608 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCCB-------CC-CCCTTSEESEEECCSSCCS-----------------------
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCccc-------ch-hhcCCCcceEEECcCCccc-----------------------
Confidence            5 4444  45555555555555555431       11 3444455555555555444                       


Q ss_pred             ccccCCcccccCCC-cCeeecccccCCCCCCccccCCCC--CcEEEccCCCCCCCCCccc---c--CCCCCcEEEccCCc
Q 038552          243 ISGTIPPGIRNLVN-LIALTMEINKLHGTIPDTIGELKN--LQQLSLYNNSLQGSIPSSL---G--NLTKLVELPLSYNN  314 (659)
Q Consensus       243 ~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~  314 (659)
                         .+|..+..+++ |+.|++++|.+. .+|..+..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.
T Consensus       609 ---~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~  684 (876)
T 4ecn_A          609 ---EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE  684 (876)
T ss_dssp             ---CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred             ---cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence               44444555555 555555555554 44444443322  5555555555554433211   1  22355555555555


Q ss_pred             cccccCccC-cCCCCCCEEeCCCcccccccchhhhhc--------ccccceeccccccccCCCccccc--cCCCCceeec
Q 038552          315 LQGNIPSSL-GNCQILRMFNASRNKLTGALPHQLLSI--------TTLTLSLDLSNNLLNGSLPLQVG--NLKNLVKLDI  383 (659)
Q Consensus       315 l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~--------~~l~~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L  383 (659)
                      +. .+|..+ ..+++|+.|++++|.+. .+|..++..        +.++ .|+|++|++. .+|..+.  .+++|+.|+|
T Consensus       685 L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~-~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~L  760 (876)
T 4ecn_A          685 IQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT-TIDLRFNKLT-SLSDDFRATTLPYLSNMDV  760 (876)
T ss_dssp             CC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCC-EEECCSSCCC-CCCGGGSTTTCTTCCEEEC
T ss_pred             CC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCcc-EEECCCCCCc-cchHHhhhccCCCcCEEEe
Confidence            55 333332 34555555555555555 444433322        2454 5666666665 4555554  6666666666


Q ss_pred             CCCcccccCCccccCCCCCCeEECCC------CCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcC
Q 038552          384 SGNQFSGVIPVTLSACVSLEYLNISR------NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSY  457 (659)
Q Consensus       384 ~~n~l~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~  457 (659)
                      ++|++++ +|..+..+++|++|+|++      |.+.+.+|..+.++++|+.|+|++|.+ +.+|..+.  ++|+.|++++
T Consensus       761 s~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~  836 (876)
T 4ecn_A          761 SYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIAD  836 (876)
T ss_dssp             CSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCS
T ss_pred             CCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCC
Confidence            6666665 566666666666666654      666667777777777777777777777 55666544  5777777777


Q ss_pred             CcCccc
Q 038552          458 NHFEGE  463 (659)
Q Consensus       458 n~l~~~  463 (659)
                      |++...
T Consensus       837 N~l~~i  842 (876)
T 4ecn_A          837 NPNISI  842 (876)
T ss_dssp             CTTCEE
T ss_pred             CCCCcc
Confidence            776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.8e-46  Score=410.83  Aligned_cols=435  Identities=17%  Similarity=0.260  Sum_probs=369.0

Q ss_pred             CCCcEEeccccCCCccccccccCCCCCcEEEccCCcc------Cc------ccccccCCCCCCCEEEeecCcCCccCccc
Q 038552           31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSL------GG------KIPTTLGLLRNLVDLNVGENRFSGMFPRS   98 (659)
Q Consensus        31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l------~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~   98 (659)
                      .+++.|+|+++.+.|.+|.+++++++|++|+|++|.+      .+      .+|...  +..|+ ++++.+.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            4788999999999999999999999999999998865      12      233322  44566 777777777666665


Q ss_pred             ccC-------------------CCCCCEEecc--CccccccChHHHhcCCCCCcEEEccCCcCCcc--------------
Q 038552           99 ICN-------------------ISSLEWIYLP--FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGS--------------  143 (659)
Q Consensus        99 ~~~-------------------l~~L~~L~l~--~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------  143 (659)
                      +..                   ...++.+.+.  .|.+++ +|..+. .+++|++|++++|.+++.              
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchh
Confidence            552                   1122333332  578886 998877 899999999999999985              


Q ss_pred             ---cChhcc--CCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCC-CCCCCCCCccccccccC------CCCCcEE
Q 038552          144 ---IPNSLS--NASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN-LGMGTANDLDFVTFLTN------CSSLKVI  211 (659)
Q Consensus       144 ---~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~------~~~L~~L  211 (659)
                         +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++.     .++..+..      +++|++|
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~-----~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE-----QLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH-----HHHHHHHHHHHSGGGGTCCEE
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc-----cchHHHHhhhccccCCCCCEE
Confidence               899999  99999999999999999999999999999999999998 7641     24444444      4899999


Q ss_pred             EccCCccccccCh--hHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCC-CcEEEccC
Q 038552          212 SLYANQFGGELPH--SIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKN-LQQLSLYN  288 (659)
Q Consensus       212 ~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~  288 (659)
                      ++++|.++ .+|.  .+..+. +|+.|++++|.++|.+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++++
T Consensus       311 ~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          311 YIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             ECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred             ECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence            99999999 8888  888876 89999999999999999 9999999999999999998 78888999999 99999999


Q ss_pred             CCCCCCCCccccCCC--CCcEEEccCCccccccCccCc-------CCCCCCEEeCCCcccccccchhhh-hcccccceec
Q 038552          289 NSLQGSIPSSLGNLT--KLVELPLSYNNLQGNIPSSLG-------NCQILRMFNASRNKLTGALPHQLL-SITTLTLSLD  358 (659)
Q Consensus       289 n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~~L~  358 (659)
                      |.+. .+|..+..++  +|++|++++|.+.+..|..+.       .+++|+.|++++|.++ .+|..+. .++.++ .|+
T Consensus       387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~-~L~  463 (636)
T 4eco_A          387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLS-SIN  463 (636)
T ss_dssp             SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCS-EEE
T ss_pred             CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCC-EEE
Confidence            9999 7888887755  899999999999999998888       7889999999999999 5676655 488898 999


Q ss_pred             cccccccCCCcccc-ccC-------CCCceeecCCCcccccCCcccc--CCCCCCeEECCCCCCCCCCcccccCCCCCCE
Q 038552          359 LSNNLLNGSLPLQV-GNL-------KNLVKLDISGNQFSGVIPVTLS--ACVSLEYLNISRNFFHGIIPLSLSSLKSIKE  428 (659)
Q Consensus       359 l~~n~l~~~~~~~l-~~l-------~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  428 (659)
                      +++|.+. .+|..+ ...       ++|++|+|++|+++ .+|..+.  .+++|++|+|++|.+.+ +|..+..+++|+.
T Consensus       464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~  540 (636)
T 4eco_A          464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG  540 (636)
T ss_dssp             CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred             CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence            9999999 555443 322       39999999999999 6787776  99999999999999997 8889999999999


Q ss_pred             EEC------CCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCccc
Q 038552          429 FNV------SSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGG  487 (659)
Q Consensus       429 L~l------~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  487 (659)
                      |++      ++|.+.+.+|..+..+++|+.|++++|++ +.+|.. .+++++.+++++|+..|-.
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred             EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence            999      56788999999999999999999999999 678865 4489999999999988844

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.1e-45  Score=396.27  Aligned_cols=449  Identities=19%  Similarity=0.199  Sum_probs=369.4

Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCc-ccccccCCCCC
Q 038552            2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGG-KIPTTLGLLRN   80 (659)
Q Consensus         2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~   80 (659)
                      +|+++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+ ..|..++++++
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            58899999999999999998888999999999999999999998888889999999999999999976 45788999999


Q ss_pred             CCEEEeecCcCCccCc-ccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEc
Q 038552           81 LVDLNVGENRFSGMFP-RSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDL  159 (659)
Q Consensus        81 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  159 (659)
                      |++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+. .+++|+.|++++|.+.......+..+++|++|++
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL  203 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecccCcccccchhhHhhcccccEEEc
Confidence            9999999998544554 6899999999999999999977888776 7999999999999987443333467999999999


Q ss_pred             cCCCCcccc--c-cccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCcccccc--C----hhHHhcc
Q 038552          160 TSNQLKGKV--S-IDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGEL--P----HSIANLS  230 (659)
Q Consensus       160 ~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~--~----~~~~~~~  230 (659)
                      ++|.+++..  + .....+++|+.|++++|.+++....  .+...+..+++|+.+++++|.+.+..  +    ..+..+ 
T Consensus       204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l-  280 (549)
T 2z81_A          204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN--ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL-  280 (549)
T ss_dssp             ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH--HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC-
T ss_pred             cCCccccccccccchhhhhhcccceeccccccchhHHH--HHHHHhhhhccccccccccccccccccccccchhhhhhh-
Confidence            999998752  1 2235678999999999987652221  23345577889999999999876421  1    111222 


Q ss_pred             ccCCEEEcccCccccc-----CCcccccCCCcCeeecccccCCCCCCccc-cCCCCCcEEEccCCCCCCCCC---ccccC
Q 038552          231 STMTDFRIGANQISGT-----IPPGIRNLVNLIALTMEINKLHGTIPDTI-GELKNLQQLSLYNNSLQGSIP---SSLGN  301 (659)
Q Consensus       231 ~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~---~~~~~  301 (659)
                      .+++.+.+.++.+...     ++..+....+|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..|   ..++.
T Consensus       281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  359 (549)
T 2z81_A          281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA  359 (549)
T ss_dssp             TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred             cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence            3788999988876532     2222345678999999999987 566555 579999999999999987654   34788


Q ss_pred             CCCCcEEEccCCccccccC--ccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCc
Q 038552          302 LTKLVELPLSYNNLQGNIP--SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLV  379 (659)
Q Consensus       302 l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~  379 (659)
                      +++|++|++++|.+++..+  ..+..+++|++|++++|+++ .+|..+..++.++ .|++++|.+.+ +|..+  .++|+
T Consensus       360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~-~L~Ls~N~l~~-l~~~~--~~~L~  434 (549)
T 2z81_A          360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR-FLNLSSTGIRV-VKTCI--PQTLE  434 (549)
T ss_dssp             STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC-EEECTTSCCSC-CCTTS--CTTCS
T ss_pred             cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc-EEECCCCCccc-ccchh--cCCce
Confidence            9999999999999985432  45888999999999999998 6888888888998 89999999874 34333  26999


Q ss_pred             eeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCc
Q 038552          380 KLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNH  459 (659)
Q Consensus       380 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~  459 (659)
                      +|+|++|++++.+    ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|..+..+++|+.|++++|+
T Consensus       435 ~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          435 VLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             EEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence            9999999998653    57899999999999998 5664 5679999999999999999999999999999999999999


Q ss_pred             CcccCCC
Q 038552          460 FEGEVPK  466 (659)
Q Consensus       460 l~~~~p~  466 (659)
                      +.|.+|.
T Consensus       509 ~~~~~~~  515 (549)
T 2z81_A          509 WDCSCPR  515 (549)
T ss_dssp             BCCCHHH
T ss_pred             ccCCCcc
Confidence            9998874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.1e-45  Score=404.90  Aligned_cols=440  Identities=18%  Similarity=0.228  Sum_probs=340.0

Q ss_pred             CCCcEEeccccCCCccccccccCCCCCcEEEc-cCCccCcccccccCCC-CCCCE-----E---------Ee-ecCcCCc
Q 038552           31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI-IGNSLGGKIPTTLGLL-RNLVD-----L---------NV-GENRFSG   93 (659)
Q Consensus        31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~l-~~L~~-----L---------~l-~~n~l~~   93 (659)
                      .++..|+|+++.+.|.+|.+++++++|++|+| ++|.+.+..|...... ..+..     +         .. ....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            56888999999999899999999999999999 7777766533221111 00000     0         00 0000000


Q ss_pred             c-----------CcccccCCCCCCEEeccC--ccccccChHHHhcCCCCCcEEEccCCcCCc-----------------c
Q 038552           94 M-----------FPRSICNISSLEWIYLPF--NRFSGSLPLDIAVNLPNLKALAIGGNNFFG-----------------S  143 (659)
Q Consensus        94 ~-----------~~~~~~~l~~L~~L~l~~--n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------~  143 (659)
                      .           .+........++.+.+..  |.+++ +|..+. .+++|+.|++++|.+++                 .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence            0           011112223344444433  66765 777665 67788888888887776                 3


Q ss_pred             cChhcc--CCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCC-CCC-CCCCCcccc-ccccCCCCCcEEEccCCcc
Q 038552          144 IPNSLS--NASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN-LGM-GTANDLDFV-TFLTNCSSLKVISLYANQF  218 (659)
Q Consensus       144 ~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~-~~l~~~~~L~~L~l~~n~~  218 (659)
                      +|..++  ++++|++|++++|.+.+.+|..|+++++|+.|++++|+ +++ .-+..+.-. ..+..+++|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            788877  88999999999998888888888889999999999887 653 111000000 1344566999999999999


Q ss_pred             ccccCh--hHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCC-CcEEEccCCCCCCCC
Q 038552          219 GGELPH--SIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKN-LQQLSLYNNSLQGSI  295 (659)
Q Consensus       219 ~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~  295 (659)
                      . .+|.  .+..+. +|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+
T Consensus       561 ~-~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          561 E-EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             C-BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             C-ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            8 8888  788876 8999999999998 788 8999999999999999999 88888999999 999999999999 78


Q ss_pred             CccccCCCC--CcEEEccCCccccccCcc---Cc--CCCCCCEEeCCCcccccccchhhh-hcccccceeccccccccCC
Q 038552          296 PSSLGNLTK--LVELPLSYNNLQGNIPSS---LG--NCQILRMFNASRNKLTGALPHQLL-SITTLTLSLDLSNNLLNGS  367 (659)
Q Consensus       296 ~~~~~~l~~--L~~L~l~~n~l~~~~~~~---~~--~~~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~~L~l~~n~l~~~  367 (659)
                      |..+..++.  |+.|++++|.+.+.+|..   +.  .+++|+.|++++|.++ .+|..++ .++.++ .|++++|.+. .
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~-~L~Ls~N~L~-~  711 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPIS-TIILSNNLMT-S  711 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCS-EEECCSCCCS-C
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCC-EEECCCCcCC-c
Confidence            888877654  999999999999866532   22  3458999999999999 6777765 788888 9999999998 5


Q ss_pred             Ccccccc--------CCCCceeecCCCcccccCCcccc--CCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCC----
Q 038552          368 LPLQVGN--------LKNLVKLDISGNQFSGVIPVTLS--ACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSS----  433 (659)
Q Consensus       368 ~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----  433 (659)
                      +|..+..        +++|++|+|++|+++ .+|..+.  .+++|+.|+|++|.+.+ +|..+..+++|+.|++++    
T Consensus       712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l  789 (876)
T 4ecn_A          712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA  789 (876)
T ss_dssp             CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred             cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence            6654433        349999999999999 6788887  99999999999999997 788999999999999977    


Q ss_pred             --CcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCc
Q 038552          434 --NNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLC  485 (659)
Q Consensus       434 --n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc  485 (659)
                        |.+.+.+|..+..+++|+.|++++|++ +.+|.. .+++++.+++++|+...
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS  841 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence              788999999999999999999999999 788875 45789999999998754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-44  Score=387.11  Aligned_cols=432  Identities=20%  Similarity=0.192  Sum_probs=359.1

Q ss_pred             cEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCc
Q 038552           34 QTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFN  113 (659)
Q Consensus        34 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  113 (659)
                      ++|++++|.++ .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            58999999999 6787665  89999999999998888889999999999999999999888999999999999999999


Q ss_pred             cccccChHHHhcCCCCCcEEEccCCcCCc-ccChhccCCCCCCEEEccCCCCccccccccCCCCCC--CEEECCCCCC--
Q 038552          114 RFSGSLPLDIAVNLPNLKALAIGGNNFFG-SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNL--SWLNLEQNNL--  188 (659)
Q Consensus       114 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--  188 (659)
                      .++ .+|..   .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  +.|++++|.+  
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            998 78876   69999999999999987 478899999999999999999986   356777788  9999999988  


Q ss_pred             CCCCCCCccc--------------------cccccCCCCCcEEEccCCc-------cccccChhHHhccccCCEEEcccC
Q 038552          189 GMGTANDLDF--------------------VTFLTNCSSLKVISLYANQ-------FGGELPHSIANLSSTMTDFRIGAN  241 (659)
Q Consensus       189 ~~~~~~~~~~--------------------~~~l~~~~~L~~L~l~~n~-------~~~~~~~~~~~~~~~L~~L~l~~~  241 (659)
                      .+..+..+..                    ...+..+++|+.|++++|.       +.+.+| .+..+. +++.|++++|
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~-~L~~L~l~~~  230 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP-KLSNLTLNNI  230 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT-TCCEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc-chhhcccccc
Confidence            4322221111                    1134457788888888876       554444 455554 7888888888


Q ss_pred             cccccCCcccc---cCCCcCeeecccccCCCCCCccc-----cCCCCCcEEEccCCCCCCCCC-ccccCC---CCCcEEE
Q 038552          242 QISGTIPPGIR---NLVNLIALTMEINKLHGTIPDTI-----GELKNLQQLSLYNNSLQGSIP-SSLGNL---TKLVELP  309 (659)
Q Consensus       242 ~~~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~  309 (659)
                      .+++..+..+.   ..++|++|++++|.+.+.+|..+     +.+++|+.+++++|.+  .+| ..+..+   ++|+.|+
T Consensus       231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred             ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence            77754322221   24689999999999998888888     8899999999999998  445 444443   6799999


Q ss_pred             ccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccC--CCccccccCCCCceeecCCCc
Q 038552          310 LSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG--SLPLQVGNLKNLVKLDISGNQ  387 (659)
Q Consensus       310 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~  387 (659)
                      +++|.+....  .+..+++|++|++++|.+++.+|..+..++.++ .|++++|.+.+  .+|..+..+++|++|+|++|.
T Consensus       309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELE-TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS  385 (520)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC-EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred             cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCC-EEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence            9999886432  136889999999999999998999999999998 99999999987  566789999999999999999


Q ss_pred             ccccCCc-cccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          388 FSGVIPV-TLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       388 l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      +++.+|. .+..+++|++|++++|.+++..|..+.  ++|+.|++++|.++ .+|..+..+++|+.|++++|+++. +|.
T Consensus       386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~  461 (520)
T 2z7x_B          386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPD  461 (520)
T ss_dssp             CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCT
T ss_pred             CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCH
Confidence            9985554 588999999999999999988877664  79999999999998 677777799999999999999995 554


Q ss_pred             --CCccCCcccccccCCCCCcc
Q 038552          467 --KGVFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       467 --~~~~~~~~~~~~~~n~~lc~  486 (659)
                        ...+++++.+++++|++.|.
T Consensus       462 ~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          462 GIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCC
T ss_pred             HHhccCCcccEEECcCCCCccc
Confidence              35577899999999999884

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.7e-43  Score=379.46  Aligned_cols=437  Identities=18%  Similarity=0.208  Sum_probs=307.7

Q ss_pred             CCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEE
Q 038552            6 YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLN   85 (659)
Q Consensus         6 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   85 (659)
                      |...+++++++|.++ .+|..+.  ++|++|++++|.+++..+.+|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            445578999999988 4777664  7899999999999877778899999999999999999888888899999999999


Q ss_pred             eecCcCCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCC--CEEEccCC
Q 038552           86 VGENRFSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNL--EILDLTSN  162 (659)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n  162 (659)
                      +++|.++ .+|..  .+++|++|++++|.+++ .+|..+. .+++|++|++++|.+++.   .+..+++|  ++|++++|
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence            9999988 56655  78999999999998874 2345555 789999999999988753   35555566  99999999


Q ss_pred             CC--ccccccccCCCC--CCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCC----------------------
Q 038552          163 QL--KGKVSIDFSSLK--NLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYAN----------------------  216 (659)
Q Consensus       163 ~l--~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n----------------------  216 (659)
                      .+  ++..+..+..+.  .+ .++++.|.+.+.     .....+..+++|+.+++++|                      
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~  253 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSV-----QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN  253 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCC-----CCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred             cccccccCcccccccCcceE-EEEecCccchhh-----hhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence            88  666666665543  12 334444544321     11122334444555555444                      


Q ss_pred             ------ccccccChhHHh--ccccCCEEEcccCcccccCCccc-----ccCCCcCeeecccccCCCCCC-ccccC---CC
Q 038552          217 ------QFGGELPHSIAN--LSSTMTDFRIGANQISGTIPPGI-----RNLVNLIALTMEINKLHGTIP-DTIGE---LK  279 (659)
Q Consensus       217 ------~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---~~  279 (659)
                            .+.+.....+..  ...++++|++++|.+++.+|..+     ..++.|+.+++..+.+  .+| ..+..   ..
T Consensus       254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~  331 (562)
T 3a79_B          254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEM  331 (562)
T ss_dssp             EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTC
T ss_pred             EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccC
Confidence                  333221111110  01267777777777777777665     5555555556655555  333 22221   25


Q ss_pred             CCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCccccc--ccchhhhhccccccee
Q 038552          280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG--ALPHQLLSITTLTLSL  357 (659)
Q Consensus       280 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~L  357 (659)
                      +|++|++++|.+....  ....+++|++|++++|.+++..|..+..+++|+.|++++|++++  .+|..+..++.++ .|
T Consensus       332 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~-~L  408 (562)
T 3a79_B          332 NIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE-TL  408 (562)
T ss_dssp             CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC-EE
T ss_pred             cceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC-EE
Confidence            6888888888775322  12577888888888888887778888888888888888888875  3345677778887 78


Q ss_pred             ccccccccCCCcc-ccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552          358 DLSNNLLNGSLPL-QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL  436 (659)
Q Consensus       358 ~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  436 (659)
                      ++++|.+.+.+|. .+..+++|++|+|++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|.+
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred             ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence            8888888874544 477788888888888888776665544  67888888888887 5666666888888888888888


Q ss_pred             cccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          437 SGLIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       437 ~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      ++..+..+..+++|+.|++++|++.|.++.
T Consensus       486 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            854333477888888888888888877764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.9e-41  Score=374.81  Aligned_cols=468  Identities=21%  Similarity=0.190  Sum_probs=358.3

Q ss_pred             CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552            8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG   87 (659)
Q Consensus         8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   87 (659)
                      ++++|||++|.+++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.+.+..+..|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            78999999999997777889999999999999999998778889999999999999999977777889999999999999


Q ss_pred             cCcCCccCcccccCCCCCCEEeccCccccc-cChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCC----CEEEccCC
Q 038552           88 ENRFSGMFPRSICNISSLEWIYLPFNRFSG-SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNL----EILDLTSN  162 (659)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~n  162 (659)
                      +|++++..+..|+++++|++|++++|.+++ .+|..+. .+++|++|++++|++++..+..+..++++    ..++++.|
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            999997777789999999999999998874 3455554 78999999999999988877777655443    46777877


Q ss_pred             CCccccccccCCCCCCCEEECCCCCCC-------------------------C------CCCCC----------------
Q 038552          163 QLKGKVSIDFSSLKNLSWLNLEQNNLG-------------------------M------GTAND----------------  195 (659)
Q Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-------------------------~------~~~~~----------------  195 (659)
                      .+....+..+.. ..++.+++.+|...                         .      .....                
T Consensus       212 ~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            776544332222 22233333332111                         0      00000                


Q ss_pred             -----ccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC
Q 038552          196 -----LDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT  270 (659)
Q Consensus       196 -----~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  270 (659)
                           ......+..+.+++.+.+..+.+....+  +.. ...++.+++.+|.+.+..+   ..+..|+.+++..|.....
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~-~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~  364 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSY-NFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA  364 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGS-CCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB
T ss_pred             hcccccchhhhhhhhcccccccccccccccccc--ccc-chhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC
Confidence                 0011223445677788887776653222  222 2378999999998875433   3456788888888877643


Q ss_pred             CCccccCCCCCcEEEccCCCCCC--CCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccc-hhh
Q 038552          271 IPDTIGELKNLQQLSLYNNSLQG--SIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALP-HQL  347 (659)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~  347 (659)
                      .  ....+++|+.+++++|.+..  ..+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+......+ ..+
T Consensus       365 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  441 (635)
T 4g8a_A          365 F--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF  441 (635)
T ss_dssp             C--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred             c--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccc
Confidence            3  34578899999999998763  355566778899999999888764 55678888999999998887765554 345


Q ss_pred             hhcccccceeccccccccCCCccccccCCCCceeecCCCcc-cccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCC
Q 038552          348 LSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF-SGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSI  426 (659)
Q Consensus       348 ~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  426 (659)
                      ..+..+. .+++++|.+.+..+..+..++.|++|+|++|.+ .+..|..|..+++|++|+|++|++.+..|..|.++++|
T Consensus       442 ~~l~~l~-~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          442 LSLRNLI-YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTCTTCC-EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccccccc-cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            6677777 899999999888888888999999999999875 44577888999999999999999998888889999999


Q ss_pred             CEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-Cc-cCCcccccccCCCCCccc
Q 038552          427 KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GV-FSNKTKISLQGNVKLCGG  487 (659)
Q Consensus       427 ~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~-~~~~~~~~~~~n~~lc~~  487 (659)
                      +.|+|++|++++..|..+..+++|+.|++++|++++..|.. .. ..+++.+++++||+.|..
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999999888888899999999999999999887754 22 357888999999999853

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.2e-40  Score=366.35  Aligned_cols=453  Identities=21%  Similarity=0.203  Sum_probs=348.1

Q ss_pred             EEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCc
Q 038552           11 ELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENR   90 (659)
Q Consensus        11 ~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   90 (659)
                      +.+-++..++ .+|..+.  .++++|+|++|.+++..+.+|.++++|++|+|++|.+.+..+.+|.++++|++|+|++|+
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            4455555666 5676653  479999999999998778899999999999999999988778889999999999999999


Q ss_pred             CCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcc-cChhccCCCCCCEEEccCCCCccccc
Q 038552           91 FSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGS-IPNSLSNASNLEILDLTSNQLKGKVS  169 (659)
Q Consensus        91 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~  169 (659)
                      +++..+..|.++++|++|++++|.++ .+|...+..+++|++|++++|.+++. .|..++.+++|++|++++|.+++..+
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            99777788999999999999999998 67665555899999999999999764 67888999999999999999998888


Q ss_pred             cccCCCCCC----CEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccCh-hHHhc---------------
Q 038552          170 IDFSSLKNL----SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPH-SIANL---------------  229 (659)
Q Consensus       170 ~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~---------------  229 (659)
                      ..|..+.++    ..++++.|.+......       ......+..+++..|......+. .+..+               
T Consensus       191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-------~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  263 (635)
T 4g8a_A          191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPG-------AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  263 (635)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECTT-------TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             ccccchhhhhhhhhhhhcccCcccccCcc-------cccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence            877665544    4688888887653321       11222334444444322211110 01100               


Q ss_pred             -----------------------------------------cccCCEEEcccCcccccCCcccccCCCcCeeecccccCC
Q 038552          230 -----------------------------------------SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH  268 (659)
Q Consensus       230 -----------------------------------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  268 (659)
                                                               ...++.+.+..+.+...  ..+.....++.|++.+|.+.
T Consensus       264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~  341 (635)
T 4g8a_A          264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG  341 (635)
T ss_dssp             SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEES
T ss_pred             ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhccccccc
Confidence                                                     01233333333333321  12344556777777777665


Q ss_pred             CCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCcccc--ccCccCcCCCCCCEEeCCCcccccccchh
Q 038552          269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQG--NIPSSLGNCQILRMFNASRNKLTGALPHQ  346 (659)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  346 (659)
                      +..+.   .+..|+.+++.+|.....  .....+++|+.|++++|.+..  ..+..+..+.+|+.+++..+... ..+..
T Consensus       342 ~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~  415 (635)
T 4g8a_A          342 QFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN  415 (635)
T ss_dssp             SCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC
T ss_pred             CcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccc
Confidence            44332   456777788877776533  234578999999999998763  45666778899999999999887 45566


Q ss_pred             hhhcccccceeccccccccCCCc-cccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCC-CCCcccccCCC
Q 038552          347 LLSITTLTLSLDLSNNLLNGSLP-LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH-GIIPLSLSSLK  424 (659)
Q Consensus       347 ~~~~~~l~~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~  424 (659)
                      +..++.+. .++++++......+ ..+..+++++.+++++|.+.+..+..+..+++|++|++++|.+. +..|..|..++
T Consensus       416 ~~~l~~L~-~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          416 FLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             CTTCTTCC-EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cccccccc-chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence            77888888 89999888765544 46788999999999999999999999999999999999999854 45788899999


Q ss_pred             CCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-CccCCcccccccCCCC
Q 038552          425 SIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVK  483 (659)
Q Consensus       425 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~  483 (659)
                      +|+.|++++|.+++..|..|..+++|+.|++++|++++..|.. ..+++++.+++++|.-
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  554 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  554 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence            9999999999999999999999999999999999999876643 5567899999999954

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.6e-41  Score=363.82  Aligned_cols=433  Identities=18%  Similarity=0.159  Sum_probs=334.1

Q ss_pred             CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038552           29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWI  108 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  108 (659)
                      .|...+++++++|.++ .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.+|.++++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            3455689999999999 4777654  899999999999988888899999999999999999998889999999999999


Q ss_pred             eccCccccccChHHHhcCCCCCcEEEccCCcCCcc-cChhccCCCCCCEEEccCCCCccccccccCCCCCC--CEEECCC
Q 038552          109 YLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGS-IPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNL--SWLNLEQ  185 (659)
Q Consensus       109 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~  185 (659)
                      ++++|.++ .+|..   .+++|++|++++|.+++. +|..++++++|++|++++|.+++.   .+..+++|  +.|++++
T Consensus       106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            99999998 78876   699999999999999873 468899999999999999998864   35555555  9999999


Q ss_pred             CCC--CCCCCCCccccccccCCC-CCcEEEccCCccccccChhHHhccccCCEEEcccCcc-----cccCCcccccC---
Q 038552          186 NNL--GMGTANDLDFVTFLTNCS-SLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQI-----SGTIPPGIRNL---  254 (659)
Q Consensus       186 n~l--~~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~l~~l---  254 (659)
                      |.+  ++..      +..+..+. ..-.++++.|.+.+.++........+|+.+++++|..     .+. ...+..+   
T Consensus       179 n~l~~~~~~------~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L  251 (562)
T 3a79_B          179 VSYHIKGGE------TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTL  251 (562)
T ss_dssp             SSCCCCSSS------CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSC
T ss_pred             ccccccccC------cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcc
Confidence            988  5432      23333332 1225678888877766554333334677777777631     110 1112222   


Q ss_pred             ------------------------CCcCeeecccccCCCCCCccc-----cCCCCCcEEEccCCCCCCCCC-ccccC---
Q 038552          255 ------------------------VNLIALTMEINKLHGTIPDTI-----GELKNLQQLSLYNNSLQGSIP-SSLGN---  301 (659)
Q Consensus       255 ------------------------~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~---  301 (659)
                                              ++|++|++++|.+.+.+|..+     ..++.|+.+++..+.+  .+| ..+..   
T Consensus       252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~  329 (562)
T 3a79_B          252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA  329 (562)
T ss_dssp             EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred             eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence                                    366666666666666666555     4555555555555554  223 11111   


Q ss_pred             CCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCC--CccccccCCCCc
Q 038552          302 LTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS--LPLQVGNLKNLV  379 (659)
Q Consensus       302 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~--~~~~l~~l~~L~  379 (659)
                      .++|++|++++|.+....  ....+++|++|++++|.+++..|..+..++.++ .|++++|.+.+.  +|..+..+++|+
T Consensus       330 ~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          330 EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ-TLILQRNGLKNFFKVALMTKNMSSLE  406 (562)
T ss_dssp             TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC-EEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred             cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCC-EEECCCCCcCCcccchhhhcCCCCCC
Confidence            256888888888875322  126889999999999999998999999999998 999999999874  356789999999


Q ss_pred             eeecCCCcccccCC-ccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCC
Q 038552          380 KLDISGNQFSGVIP-VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN  458 (659)
Q Consensus       380 ~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n  458 (659)
                      +|+|++|.+++.+| ..+..+++|++|++++|.+++..|..+.  ++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus       407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS
T ss_pred             EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC
Confidence            99999999998455 4588999999999999999987776554  79999999999998 56766679999999999999


Q ss_pred             cCcccCCC-CCccCCcccccccCCCCCcc
Q 038552          459 HFEGEVPK-KGVFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       459 ~l~~~~p~-~~~~~~~~~~~~~~n~~lc~  486 (659)
                      +++...+. ...++.++.+++++|++.|.
T Consensus       484 ~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          484 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            99954333 45678899999999999984

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-39  Score=343.96  Aligned_cols=393  Identities=18%  Similarity=0.205  Sum_probs=269.9

Q ss_pred             CEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCccc-ccccCCCCCCCEEEeec
Q 038552           10 IELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKI-PTTLGLLRNLVDLNVGE   88 (659)
Q Consensus        10 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~   88 (659)
                      +.++.+++.++ .+|. +.  ++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            46777888777 5565 32  68999999999999888889999999999999999886555 56789999999999999


Q ss_pred             CcCCccCcccccCCCCCCEEeccCccccccChHH-HhcCCCCCcEEEccCCcCCcccChh-ccCCCCCCEEEccCCCCcc
Q 038552           89 NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD-IAVNLPNLKALAIGGNNFFGSIPNS-LSNASNLEILDLTSNQLKG  166 (659)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~  166 (659)
                      |.+++..|..++++++|++|++++|.+++.++.. ....+++|++|++++|.+++..|.. +.++++|++|++++|.+++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            9998888889999999999999999988655543 2337889999999999988777765 7888999999999998888


Q ss_pred             ccccccCCC--CCCCEEECCCCCCCCCCCCCcc--ccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCc
Q 038552          167 KVSIDFSSL--KNLSWLNLEQNNLGMGTANDLD--FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ  242 (659)
Q Consensus       167 ~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~  242 (659)
                      ..+..+..+  .+|+.|++++|.+.........  ....+..+++|++|++++|.+.+..|..+....            
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~------------  236 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI------------  236 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT------------
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc------------
Confidence            777777665  6778888888877654322111  111233445666666666666655555444321            


Q ss_pred             ccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCcccc--CCCCCcEEEccCCccccccC
Q 038552          243 ISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG--NLTKLVELPLSYNNLQGNIP  320 (659)
Q Consensus       243 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~  320 (659)
                                ..++|+.|++++|...+...              ..+.+.+..+..+.  ..++|++|++++|.+.+..|
T Consensus       237 ----------~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  292 (455)
T 3v47_A          237 ----------AGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK  292 (455)
T ss_dssp             ----------TTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred             ----------cccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccch
Confidence                      11333444444443322100              01111111111111  12445555555555555455


Q ss_pred             ccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCC
Q 038552          321 SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV  400 (659)
Q Consensus       321 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  400 (659)
                      ..+..+++|+.|++++|.+.                         +..|..+..+++|++|+|++|.+++..+..+..++
T Consensus       293 ~~~~~l~~L~~L~Ls~n~l~-------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  347 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQNEIN-------------------------KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD  347 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred             hhcccCCCCCEEECCCCccc-------------------------ccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence            55555555555555444443                         34445566677777777777777777777777788


Q ss_pred             CCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552          401 SLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~  467 (659)
                      +|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|..
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            8888888888887777777888888888888888888766667778888888888888888888754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.9e-40  Score=346.54  Aligned_cols=383  Identities=19%  Similarity=0.184  Sum_probs=241.5

Q ss_pred             cEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccC-cccccCCCCCCEEeccC
Q 038552           34 QTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMF-PRSICNISSLEWIYLPF  112 (659)
Q Consensus        34 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~  112 (659)
                      +.++.+++.++ .+|. +  .++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            34566666665 4454 2  256777777777776666666777777777777777665333 44566666666666666


Q ss_pred             ccccccChHHHhcCCCCCcEEEccCCcCCcccChh--ccCCCCCCEEEccCCCCccccccc-cCCCCCCCEEECCCCCCC
Q 038552          113 NRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNS--LSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLEQNNLG  189 (659)
Q Consensus       113 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~  189 (659)
                      |.+++..|..+. .+++|++|++++|.+++.++..  +.++++|++|++++|.+++..|.. +..+++|++|++++|.++
T Consensus        89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            666643344443 5666666666666665433333  555666666666666655554443 455555555555555554


Q ss_pred             CCCCCCccccccccCCCCCcEEEccCCccccccChhHHhcc-ccCCEEEcccCcccccCCcc--------cccCCCcCee
Q 038552          190 MGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLS-STMTDFRIGANQISGTIPPG--------IRNLVNLIAL  260 (659)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L  260 (659)
                      +                              ..+..+..+. ..++.+++++|.+.+..+..        +..+++|+.|
T Consensus       168 ~------------------------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L  217 (455)
T 3v47_A          168 S------------------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL  217 (455)
T ss_dssp             C------------------------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE
T ss_pred             c------------------------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeE
Confidence            3                              2222222210 13333333333333221111        1233444444


Q ss_pred             ecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccc
Q 038552          261 TMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT  340 (659)
Q Consensus       261 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  340 (659)
                      ++++|.+.+..|..+...                     ...++|+.|++++|...+.... ...             +.
T Consensus       218 ~Ls~n~l~~~~~~~~~~~---------------------~~~~~L~~L~l~~~~~~~~~~~-~~~-------------~~  262 (455)
T 3v47_A          218 DLSGNGFKESMAKRFFDA---------------------IAGTKIQSLILSNSYNMGSSFG-HTN-------------FK  262 (455)
T ss_dssp             ECTTSCCCHHHHHHHHHH---------------------TTTCCEEEEECTTCTTTSCCTT-CCS-------------SC
T ss_pred             ecCCCcccccchhhhhcc---------------------ccccceeeEeeccccccccccc-hhh-------------hc
Confidence            554444444433333221                     0114555555555544322110 000             11


Q ss_pred             cccchhhh--hcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcc
Q 038552          341 GALPHQLL--SITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL  418 (659)
Q Consensus       341 ~~~~~~~~--~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  418 (659)
                      ...+..+.  ..+.++ .|++++|.+.+..|..+..+++|++|+|++|++++..|..|.++++|++|++++|.+.+..|.
T Consensus       263 ~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  341 (455)
T 3v47_A          263 DPDNFTFKGLEASGVK-TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR  341 (455)
T ss_dssp             CCCTTTTGGGTTSCCC-EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred             cCcccccccccccCce-EEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence            01111111  123454 677778887777788899999999999999999999999999999999999999999988899


Q ss_pred             cccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-CccCCcccccccCCCCCccc
Q 038552          419 SLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GVFSNKTKISLQGNVKLCGG  487 (659)
Q Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~  487 (659)
                      .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+..+.. ..+++++.+++++|+..|..
T Consensus       342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            9999999999999999999998999999999999999999999755543 56788999999999998853

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.7e-39  Score=334.13  Aligned_cols=404  Identities=23%  Similarity=0.278  Sum_probs=243.9

Q ss_pred             CCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCC-------------cEEEccCCccCccc
Q 038552            5 RYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSAL-------------KVFYIIGNSLGGKI   71 (659)
Q Consensus         5 ~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~   71 (659)
                      +.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++|             ++|++++|.+.+ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            468899999999999 6999999999999999999999999999999998875             889999888854 4


Q ss_pred             ccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCC
Q 038552           72 PTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNA  151 (659)
Q Consensus        72 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l  151 (659)
                      |.   -.++|++|++++|.+++ +|..   +++|++|++++|.++ .+|.    ..++|++|++++|.+++ +| .++++
T Consensus        87 p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l  152 (454)
T 1jl5_A           87 PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNS  152 (454)
T ss_dssp             CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCC
Confidence            43   23688999999998886 6643   478899999998887 4442    23688999999998886 66 58889


Q ss_pred             CCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccc
Q 038552          152 SNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSS  231 (659)
Q Consensus       152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  231 (659)
                      ++|++|++++|.+++ +|..   ..+|++|++++|.+++.       + .+..+++|++|++++|.+.+ +|..    ..
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-------~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~  215 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-------P-ELQNLPFLTAIYADNNSLKK-LPDL----PL  215 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-------C-CCTTCTTCCEEECCSSCCSS-CCCC----CT
T ss_pred             CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-------c-cccCCCCCCEEECCCCcCCc-CCCC----cC
Confidence            999999999998875 4433   35889999998888642       2 46788889999999888874 4432    23


Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      +|+.|++++|.++ .+| .++.+++|++|++++|.+.+ +|.   .+++|++|++++|.+.+ +|..   +++|++|+++
T Consensus       216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls  285 (454)
T 1jl5_A          216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS  285 (454)
T ss_dssp             TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred             cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence            7888888888887 566 47788888888888888875 343   24788888888888875 4442   3678888888


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhc-ccccceeccccccccCCCccccccCCCCceeecCCCcccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSI-TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG  390 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  390 (659)
                      +|.+++ +|..   .++|+.|++++|.+++ ++    .+ +.++ .|++++|++.+ +|..   +++|++|++++|++++
T Consensus       286 ~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~-~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~  351 (454)
T 1jl5_A          286 ENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLE-ELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE  351 (454)
T ss_dssp             SSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCC-EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred             CCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCC-EEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence            888775 2211   1578888888888774 22    22 3455 77777777775 4433   4677778888777773


Q ss_pred             cCCccccCCCCCCeEECCCCCCCC--CCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc--cCCC
Q 038552          391 VIPVTLSACVSLEYLNISRNFFHG--IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG--EVPK  466 (659)
Q Consensus       391 ~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~--~~p~  466 (659)
                       +|.   .+++|++|++++|.+.+  .+|..+..        ++.|.+.+.+|..   +++|+.|++++|++++  .+| 
T Consensus       352 -lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP-  415 (454)
T 1jl5_A          352 -VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP-  415 (454)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------------
T ss_pred             -ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccch-
Confidence             444   35777788888877776  45544332        2335555555543   4788999999999987  555 


Q ss_pred             CCccCCcccccccCCCCCc
Q 038552          467 KGVFSNKTKISLQGNVKLC  485 (659)
Q Consensus       467 ~~~~~~~~~~~~~~n~~lc  485 (659)
                          ..+..+.+.+|...|
T Consensus       416 ----~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          416 ----ESVEDLRMNSERVVD  430 (454)
T ss_dssp             -------------------
T ss_pred             ----hhHhheeCcCcccCC
Confidence                335566666665444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.1e-37  Score=326.10  Aligned_cols=385  Identities=25%  Similarity=0.305  Sum_probs=233.6

Q ss_pred             CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC-------------CEEEeecCcCCccC
Q 038552           29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL-------------VDLNVGENRFSGMF   95 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~   95 (659)
                      ...+|++|++++|.+ +.+|++++++++|++|++++|.+.+.+|..++++++|             ++|++++|.+++ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            357899999999999 6999999999999999999999989999999998875             888888888874 4


Q ss_pred             cccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCC
Q 038552           96 PRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSL  175 (659)
Q Consensus        96 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  175 (659)
                      |..   .++|++|++++|.+++ +|.    ..++|+.|++++|.+++. +..   .++|++|++++|.+++ +| +|+.+
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l  152 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNS  152 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             CCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence            432   3678888888888874 664    347888888888888742 221   2678888888888876 55 58888


Q ss_pred             CCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCC
Q 038552          176 KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLV  255 (659)
Q Consensus       176 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  255 (659)
                      ++|++|++++|++++..       ..   ..+|++|++++|.+.+ +| .+..+. +|+.|++++|.+++ +|..   .+
T Consensus       153 ~~L~~L~l~~N~l~~lp-------~~---~~~L~~L~L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~  215 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKKLP-------DL---PPSLEFIAAGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PL  215 (454)
T ss_dssp             TTCCEEECCSSCCSCCC-------CC---CTTCCEEECCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CT
T ss_pred             CCCCEEECCCCcCcccC-------CC---cccccEEECcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cC
Confidence            88888888888776421       11   2478888888888775 55 355554 78888888887775 3432   24


Q ss_pred             CcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCC
Q 038552          256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS  335 (659)
Q Consensus       256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  335 (659)
                      +|+.|++++|.+. .+| .++.+++|++|++++|++.+ +|.   .+++|++|++++|.+.+ +|..   .++|+.|+++
T Consensus       216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls  285 (454)
T 1jl5_A          216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS  285 (454)
T ss_dssp             TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred             cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence            7778888888777 455 37778888888888887774 443   23678888888887774 4443   3677888888


Q ss_pred             CcccccccchhhhhcccccceeccccccccCCCccccccC-CCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCC
Q 038552          336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNL-KNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG  414 (659)
Q Consensus       336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  414 (659)
                      +|.+++ +|..   .+.++ .|++++|.+.+.     ..+ ++|++|++++|++++ +|..   +++|++|++++|.+++
T Consensus       286 ~N~l~~-l~~~---~~~L~-~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~  351 (454)
T 1jl5_A          286 ENIFSG-LSEL---PPNLY-YLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE  351 (454)
T ss_dssp             SSCCSE-ESCC---CTTCC-EEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred             CCccCc-ccCc---CCcCC-EEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence            887775 2211   13454 677777777641     122 477788888887775 4433   4677788888887773


Q ss_pred             CCcccccCCCCCCEEECCCCcccc--cchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCC
Q 038552          415 IIPLSLSSLKSIKEFNVSSNNLSG--LIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKL  484 (659)
Q Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~l  484 (659)
                       +|.   .+++|+.|++++|.+++  .+|..+..        ++.|.+.+.+|.  .+.+++.+++++|+..
T Consensus       352 -lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~--~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          352 -VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPE--LPQNLKQLHVETNPLR  409 (454)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------------
T ss_pred             -ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccccccc--ccCcCCEEECCCCcCC
Confidence             444   36777888888887776  44544332        234666666665  2578899999998754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.7e-37  Score=324.45  Aligned_cols=348  Identities=22%  Similarity=0.233  Sum_probs=272.1

Q ss_pred             CEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCC
Q 038552          106 EWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ  185 (659)
Q Consensus       106 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (659)
                      +.++.+++.++ .+|..+   .++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            56777777777 777654   35788999999988887778888889999999998888888788888888888888888


Q ss_pred             CCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccc
Q 038552          186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEIN  265 (659)
Q Consensus       186 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  265 (659)
                      |.++...      ...+..+++|++|++++|.+.                         +..+..+..+++|++|++++|
T Consensus        90 n~l~~~~------~~~~~~l~~L~~L~Ls~n~i~-------------------------~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A           90 NRLKLIP------LGVFTGLSNLTKLDISENKIV-------------------------ILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             SCCCSCC------TTSSTTCTTCCEEECTTSCCC-------------------------EECTTTTTTCTTCCEEEECCT
T ss_pred             CcCCccC------cccccCCCCCCEEECCCCccc-------------------------cCChhHccccccCCEEECCCC
Confidence            8876422      123455666666666666554                         334455666777777777777


Q ss_pred             cCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccch
Q 038552          266 KLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPH  345 (659)
Q Consensus       266 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  345 (659)
                      .+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|.
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP  218 (477)
T ss_dssp             TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred             ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence            77776677777777888888888877766666677788888888888887776666777888888888888777777777


Q ss_pred             hhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCC
Q 038552          346 QLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKS  425 (659)
Q Consensus       346 ~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  425 (659)
                      .......++ .|++++|.+.+..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++
T Consensus       219 ~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          219 NCLYGLNLT-SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             TTTTTCCCS-EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             ccccCcccc-EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence            776666777 7888888888655567888999999999999998888888899999999999999999888888999999


Q ss_pred             CCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccCC
Q 038552          426 IKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGID  489 (659)
Q Consensus       426 L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~  489 (659)
                      |+.|++++|.+++..+..|..+++|+.|++++|++.+.++..+.+.......+.++...|..+.
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence            9999999999988877888888999999999999988776544444444566677777886543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.5e-36  Score=316.21  Aligned_cols=360  Identities=18%  Similarity=0.211  Sum_probs=224.5

Q ss_pred             CchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCC
Q 038552           23 IPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNI  102 (659)
Q Consensus        23 ~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  102 (659)
                      .+..++++++|++|++++|.+++. | .+..+++|++|++++|.+.+. |  ++.+++|++|++++|.+++. +  ++++
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l  105 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL  105 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence            344455566666666666666642 3 466666666666666666442 2  56666666666666666543 2  5666


Q ss_pred             CCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEE
Q 038552          103 SSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN  182 (659)
Q Consensus       103 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (659)
                      ++|++|++++|.++ .+|  +. .+++|++|++++|.+++. +  ++.+++|++|++++|...+.+  .++.+++|+.|+
T Consensus       106 ~~L~~L~L~~N~l~-~l~--~~-~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          106 TKLTYLNCDTNKLT-KLD--VS-QNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             TTCCEEECCSSCCS-CCC--CT-TCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCC-eec--CC-CCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            66666666666665 343  22 566666666666666542 2  556666666666666433333  355666666666


Q ss_pred             CCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeec
Q 038552          183 LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTM  262 (659)
Q Consensus       183 l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  262 (659)
                      +++|++++.       +  +..+++|+.|++++|.+++. +  +..+. +|+.|++++|.+++ +|  ++.+++|+.|++
T Consensus       177 ls~n~l~~l-------~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~-~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l  240 (457)
T 3bz5_A          177 CSFNKITEL-------D--VSQNKLLNRLNCDTNNITKL-D--LNQNI-QLTFLDCSSNKLTE-ID--VTPLTQLTYFDC  240 (457)
T ss_dssp             CCSSCCCCC-------C--CTTCTTCCEEECCSSCCSCC-C--CTTCT-TCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred             CCCCcccee-------c--cccCCCCCEEECcCCcCCee-c--cccCC-CCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence            666665531       1  44555666666666655532 1  22222 45555555555554 33  455566666666


Q ss_pred             ccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccc
Q 038552          263 EINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGA  342 (659)
Q Consensus       263 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  342 (659)
                      ++|.+++..   ++.+++|+.|++++|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.
T Consensus       241 ~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~  301 (457)
T 3bz5_A          241 SVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL  301 (457)
T ss_dssp             CSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred             eCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence            666665532   334556666665543              34556677777666665  46778888888888877766


Q ss_pred             cchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccC
Q 038552          343 LPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSS  422 (659)
Q Consensus       343 ~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  422 (659)
                      +|..   ...+. .+++             +.+++|++|++++|++++.   .+..+++|++|++++|++.+        
T Consensus       302 l~~~---~~~L~-~L~l-------------~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------  353 (457)
T 3bz5_A          302 LDCQ---AAGIT-ELDL-------------SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------  353 (457)
T ss_dssp             EECT---TCCCS-CCCC-------------TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------
T ss_pred             eccC---CCcce-Eech-------------hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------
Confidence            6642   23333 3443             3447899999999999874   38889999999999999885        


Q ss_pred             CCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552          423 LKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       423 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~  467 (659)
                      ++.|..|++++|.+.|.     ..+..|..+++++|.++|.+|..
T Consensus       354 l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          354 FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            24666778899988876     34556788899999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-35  Score=313.58  Aligned_cols=346  Identities=27%  Similarity=0.370  Sum_probs=206.4

Q ss_pred             CCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEe
Q 038552           30 LLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIY  109 (659)
Q Consensus        30 ~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  109 (659)
                      +.+++.|+++++.+. .+| .+..+++|++|++++|.+.+..+  +.++++|++|++++|.+++..+  ++++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            345666666666655 233 25566666666666666644332  6666666666666666654332  66666666666


Q ss_pred             ccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCC
Q 038552          110 LPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLG  189 (659)
Q Consensus       110 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  189 (659)
                      +++|.++ .++. + ..+++|++|++++|.+.+. + .+..+++|++|+++ +.+.+..  .+..+++|+.|++++|.++
T Consensus       119 L~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          119 LFNNQIT-DIDP-L-KNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             CCSSCCC-CCGG-G-TTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCC-CChH-H-cCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence            6666665 3333 2 2566666666666665532 2 35666666666664 2333222  2556666666666666554


Q ss_pred             CCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC
Q 038552          190 MGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG  269 (659)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  269 (659)
                      ..        ..+..+++|++|++++|.+.+..|                           ++.+++|+.|++++|.+.+
T Consensus       191 ~~--------~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~l~~L~~L~l~~n~l~~  235 (466)
T 1o6v_A          191 DI--------SVLAKLTNLESLIATNNQISDITP---------------------------LGILTNLDELSLNGNQLKD  235 (466)
T ss_dssp             CC--------GGGGGCTTCSEEECCSSCCCCCGG---------------------------GGGCTTCCEEECCSSCCCC
T ss_pred             CC--------hhhccCCCCCEEEecCCccccccc---------------------------ccccCCCCEEECCCCCccc
Confidence            31        224445555555555555443222                           3344555555555555543


Q ss_pred             CCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhh
Q 038552          270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLS  349 (659)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  349 (659)
                      .  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|++.+..+  +..
T Consensus       236 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~  307 (466)
T 1o6v_A          236 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN  307 (466)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred             c--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence            2  235555666666666666654333  5556666666666666654322  5566666666666666654332  555


Q ss_pred             cccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEE
Q 038552          350 ITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEF  429 (659)
Q Consensus       350 ~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  429 (659)
                      ++.++ .|++++|.+.+..|  +..+++|++|++++|.+++.  ..+..+++|++|++++|++.+..|  +..+++|+.|
T Consensus       308 l~~L~-~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  380 (466)
T 1o6v_A          308 LKNLT-YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL  380 (466)
T ss_dssp             CTTCS-EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred             CCCCC-EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence            66666 66777776665544  66778888888888888764  467788888888888888887766  7788888888


Q ss_pred             ECCCCccccc
Q 038552          430 NVSSNNLSGL  439 (659)
Q Consensus       430 ~l~~n~l~~~  439 (659)
                      ++++|.+++.
T Consensus       381 ~l~~n~~~~~  390 (466)
T 1o6v_A          381 GLNDQAWTNA  390 (466)
T ss_dssp             ECCCEEEECC
T ss_pred             eccCCcccCC
Confidence            8888888763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.7e-36  Score=317.50  Aligned_cols=358  Identities=18%  Similarity=0.191  Sum_probs=300.9

Q ss_pred             CCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCC
Q 038552            3 LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLV   82 (659)
Q Consensus         3 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   82 (659)
                      ++++++|++|++++|.+++. | .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+.+. +  ++++++|+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            55789999999999999964 5 799999999999999999964 4  89999999999999999764 3  89999999


Q ss_pred             EEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCC
Q 038552           83 DLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSN  162 (659)
Q Consensus        83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  162 (659)
                      +|++++|.+++ ++  ++.+++|++|++++|.+++ ++  +. .+++|++|++++|...+.+  .+..+++|++|++++|
T Consensus       110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            99999999986 44  8999999999999999984 54  33 7899999999999766555  4789999999999999


Q ss_pred             CCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCc
Q 038552          163 QLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQ  242 (659)
Q Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~  242 (659)
                      .+++. +  ++.+++|+.|++++|.+++.         .+..+++|++|++++|.+++ +|  +..+. +|+.|++++|.
T Consensus       181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~  244 (457)
T 3bz5_A          181 KITEL-D--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSNKLTE-ID--VTPLT-QLTYFDCSVNP  244 (457)
T ss_dssp             CCCCC-C--CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSC-CC--CTTCT-TCSEEECCSSC
T ss_pred             cccee-c--cccCCCCCEEECcCCcCCee---------ccccCCCCCEEECcCCcccc-cC--ccccC-CCCEEEeeCCc
Confidence            99874 3  88999999999999999763         36788999999999999997 56  55554 89999999999


Q ss_pred             ccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCcc
Q 038552          243 ISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSS  322 (659)
Q Consensus       243 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  322 (659)
                      +++..   ++.+++|+.|+++.|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|. 
T Consensus       245 l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~-  304 (457)
T 3bz5_A          245 LTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC-  304 (457)
T ss_dssp             CSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-
T ss_pred             CCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-
Confidence            99753   457788888888664              56778899998887776  57889999999999998877774 


Q ss_pred             CcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCC
Q 038552          323 LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSL  402 (659)
Q Consensus       323 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  402 (659)
                        ..++|+.|++++|             +.++ .|++++|++++.   .++.+++|+.|++++|++++        ++.|
T Consensus       305 --~~~~L~~L~l~~~-------------~~L~-~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L  357 (457)
T 3bz5_A          305 --QAAGITELDLSQN-------------PKLV-YLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSV  357 (457)
T ss_dssp             --TTCCCSCCCCTTC-------------TTCC-EEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTG
T ss_pred             --CCCcceEechhhc-------------ccCC-EEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccc
Confidence              3466777777766             3455 899999999874   38899999999999999985        3567


Q ss_pred             CeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhc
Q 038552          403 EYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLK  445 (659)
Q Consensus       403 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  445 (659)
                      +.|++++|.+.|.     ..+..|+.+++++|+++|.+|..+.
T Consensus       358 ~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          358 GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            8888999999876     3456788899999999999987653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3e-35  Score=310.94  Aligned_cols=348  Identities=29%  Similarity=0.409  Sum_probs=282.6

Q ss_pred             cCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCc
Q 038552           52 GNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLK  131 (659)
Q Consensus        52 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  131 (659)
                      ..+++++.|++.++.+. .+| .+..+++|++|++++|.+++..+  +.++++|++|++++|.++ .++. +. .+++|+
T Consensus        43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~  115 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT  115 (466)
T ss_dssp             HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCC
T ss_pred             hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCC
Confidence            34678888898888874 344 47788899999999888885433  888888999999888887 4444 43 788888


Q ss_pred             EEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEE
Q 038552          132 ALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVI  211 (659)
Q Consensus       132 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L  211 (659)
                      +|++++|.+++.. . +.++++|++|++++|.+.+. + .++.+++|+.|++. +.+..        ...+..+++|++|
T Consensus       116 ~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~--------~~~~~~l~~L~~L  182 (466)
T 1o6v_A          116 GLTLFNNQITDID-P-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTD--------LKPLANLTTLERL  182 (466)
T ss_dssp             EEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCC--------CGGGTTCTTCCEE
T ss_pred             EEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccC--------chhhccCCCCCEE
Confidence            8888888887653 2 78888888888888887753 2 47788888888885 33321        1236666777777


Q ss_pred             EccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCC
Q 038552          212 SLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSL  291 (659)
Q Consensus       212 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  291 (659)
                      ++++|.+.+                          + ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+
T Consensus       183 ~l~~n~l~~--------------------------~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          183 DISSNKVSD--------------------------I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL  233 (466)
T ss_dssp             ECCSSCCCC--------------------------C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             ECcCCcCCC--------------------------C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc
Confidence            776665542                          1 236778899999999999987655  77899999999999999


Q ss_pred             CCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccc
Q 038552          292 QGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQ  371 (659)
Q Consensus       292 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~  371 (659)
                      .+.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..++.++ .|++++|.+.+..+  
T Consensus       234 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~-~L~L~~n~l~~~~~--  304 (466)
T 1o6v_A          234 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT-NLELNENQLEDISP--  304 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS-EEECCSSCCSCCGG--
T ss_pred             ccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccC-eEEcCCCcccCchh--
Confidence            854  458899999999999999986554  8899999999999999986544  78889998 99999999987654  


Q ss_pred             cccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCC
Q 038552          372 VGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFME  451 (659)
Q Consensus       372 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  451 (659)
                      +..+++|++|+|++|++++..|  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++..|  +..+++|+
T Consensus       305 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  378 (466)
T 1o6v_A          305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT  378 (466)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred             hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence            8899999999999999997765  78999999999999999976  478999999999999999998877  88999999


Q ss_pred             eeeCcCCcCccc
Q 038552          452 FLDLSYNHFEGE  463 (659)
Q Consensus       452 ~l~l~~n~l~~~  463 (659)
                      .|++++|++++.
T Consensus       379 ~L~l~~n~~~~~  390 (466)
T 1o6v_A          379 QLGLNDQAWTNA  390 (466)
T ss_dssp             EEECCCEEEECC
T ss_pred             EEeccCCcccCC
Confidence            999999999873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=308.56  Aligned_cols=322  Identities=20%  Similarity=0.180  Sum_probs=259.8

Q ss_pred             CCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552            9 LIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE   88 (659)
Q Consensus         9 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   88 (659)
                      -+.++.+++.++ .+|..+.  .++++|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            357888888887 6677664  5899999999999988888999999999999999999888889999999999999999


Q ss_pred             CcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcccc
Q 038552           89 NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKV  168 (659)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  168 (659)
                      |.+++..+..|.++++|++|++++|.+++..+..+. .+++|+.|++++|.+++..+..+.++++|++|++++|.+++..
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHcc-ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            999866666789999999999999999855555444 8899999999999998888888999999999999999998877


Q ss_pred             ccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCC
Q 038552          169 SIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIP  248 (659)
Q Consensus       169 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  248 (659)
                      +..|..+++|+.|++++|.+...      ....+..+++|+.|++++|...+.+|....... +|+.|++++|.+++..+
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~  241 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAI------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPY  241 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEE------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCH
T ss_pred             hhHhcccCCCcEEeCCCCcCcEe------ChhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCCcccccCH
Confidence            77889999999999999988753      234567788899999998887777776655544 67788888887775443


Q ss_pred             cccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCC
Q 038552          249 PGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQI  328 (659)
Q Consensus       249 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  328 (659)
                      ..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++
T Consensus       242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  321 (477)
T 2id5_A          242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN  321 (477)
T ss_dssp             HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred             HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence            56777777888888877777666667777777888888777777777777777777777777777777655556777777


Q ss_pred             CCEEeCCCccccc
Q 038552          329 LRMFNASRNKLTG  341 (659)
Q Consensus       329 L~~L~l~~n~l~~  341 (659)
                      |+.|++++|++..
T Consensus       322 L~~L~l~~N~l~c  334 (477)
T 2id5_A          322 LETLILDSNPLAC  334 (477)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             cCEEEccCCCccC
Confidence            7777777777763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.3e-34  Score=285.66  Aligned_cols=254  Identities=27%  Similarity=0.459  Sum_probs=217.4

Q ss_pred             cCCEEEcccCcccc--cCCcccccCCCcCeeeccc-ccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEE
Q 038552          232 TMTDFRIGANQISG--TIPPGIRNLVNLIALTMEI-NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVEL  308 (659)
Q Consensus       232 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  308 (659)
                      .++.|++++|.+++  .+|..++.+++|++|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            45666666666666  6677777778888888874 77777778778888888888888888877778778888888888


Q ss_pred             EccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcc-cccceeccccccccCCCccccccCCCCceeecCCCc
Q 038552          309 PLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSIT-TLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ  387 (659)
Q Consensus       309 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  387 (659)
                      ++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ .++ .|++++|.+.+.+|..+..++ |++|+|++|.
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~-~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT-SMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC-EEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc-EEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            8888888877888888888888888888888878888888877 666 788888888888888888887 9999999999


Q ss_pred             ccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552          388 FSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       388 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~  467 (659)
                      +++..|..+..+++|++|++++|.+.+.+|. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9988999999999999999999999977765 888999999999999999999999999999999999999999999998


Q ss_pred             CccCCcccccccCCCCCcccC
Q 038552          468 GVFSNKTKISLQGNVKLCGGI  488 (659)
Q Consensus       468 ~~~~~~~~~~~~~n~~lc~~~  488 (659)
                      +.+++++.+++.+|+++|+.+
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTT
T ss_pred             ccccccChHHhcCCCCccCCC
Confidence            888999999999999999853

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.2e-33  Score=287.79  Aligned_cols=309  Identities=22%  Similarity=0.225  Sum_probs=146.7

Q ss_pred             CCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEec
Q 038552           31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYL  110 (659)
Q Consensus        31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  110 (659)
                      .++++|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            45555555555555333333455555555555555554444445555555555555555555444445555555555555


Q ss_pred             cCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCC
Q 038552          111 PFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM  190 (659)
Q Consensus       111 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  190 (659)
                      ++|.++ .+|..+                        +.++++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus       125 ~~n~l~-~l~~~~------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          125 ERNDLS-SLPRGI------------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CSSCCC-CCCTTT------------------------TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCccC-cCCHHH------------------------hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            555554 444443                        3444444444444444444444444445555555555444432


Q ss_pred             CCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC
Q 038552          191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT  270 (659)
Q Consensus       191 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  270 (659)
                      .         .+..+++|+.|++++|.+.+                              +...+.|+.|++++|.+...
T Consensus       180 ~---------~~~~l~~L~~L~l~~n~l~~------------------------------~~~~~~L~~L~l~~n~l~~~  220 (390)
T 3o6n_A          180 V---------DLSLIPSLFHANVSYNLLST------------------------------LAIPIAVEELDASHNSINVV  220 (390)
T ss_dssp             C---------CGGGCTTCSEEECCSSCCSE------------------------------EECCSSCSEEECCSSCCCEE
T ss_pred             c---------ccccccccceeecccccccc------------------------------cCCCCcceEEECCCCeeeec
Confidence            1         12223334444444333221                              11112344444444444322


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhc
Q 038552          271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSI  350 (659)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  350 (659)
                       |.  ...++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++         
T Consensus       221 -~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------  286 (390)
T 3o6n_A          221 -RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA---------  286 (390)
T ss_dssp             -EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE---------
T ss_pred             -cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc---------
Confidence             11  1124555666666655532  345555555555555555555555555555555555555554431         


Q ss_pred             ccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEE
Q 038552          351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFN  430 (659)
Q Consensus       351 ~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  430 (659)
                                       +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|.+... +  +..+++|+.|+
T Consensus       287 -----------------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~  345 (390)
T 3o6n_A          287 -----------------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT  345 (390)
T ss_dssp             -----------------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred             -----------------cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence                             1112233445555555555554 2333344455555555555555432 1  34444555555


Q ss_pred             CCCCcccc
Q 038552          431 VSSNNLSG  438 (659)
Q Consensus       431 l~~n~l~~  438 (659)
                      +++|++..
T Consensus       346 l~~N~~~~  353 (390)
T 3o6n_A          346 LSHNDWDC  353 (390)
T ss_dssp             CCSSCEEH
T ss_pred             cCCCCccc
Confidence            55555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.2e-33  Score=304.34  Aligned_cols=338  Identities=18%  Similarity=0.205  Sum_probs=254.5

Q ss_pred             CCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEE
Q 038552          102 ISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWL  181 (659)
Q Consensus       102 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  181 (659)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|+.+++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            567888888888887 6777666578888888888888887777788888888888888888887777777888888888


Q ss_pred             ECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeee
Q 038552          182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALT  261 (659)
Q Consensus       182 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  261 (659)
                      ++++|.++...      ...+..+++|++|++++|.+.                         +..|..++.+++|+.|+
T Consensus       129 ~L~~n~l~~l~------~~~~~~l~~L~~L~Ls~N~l~-------------------------~~~~~~~~~l~~L~~L~  177 (597)
T 3oja_B          129 VLERNDLSSLP------RGIFHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNLQ  177 (597)
T ss_dssp             ECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCC-------------------------BCCTTTTTTCTTCCEEE
T ss_pred             EeeCCCCCCCC------HHHhccCCCCCEEEeeCCcCC-------------------------CCChhhhhcCCcCcEEE
Confidence            88888776421      122355555666665555544                         44445566677777777


Q ss_pred             cccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCccccc
Q 038552          262 MEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG  341 (659)
Q Consensus       262 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  341 (659)
                      +++|.+++.   .++.+++|+.|++++|.+.+     +...++|+.|++++|.+....+. +  .++|+.|++++|.+++
T Consensus       178 L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~  246 (597)
T 3oja_B          178 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD  246 (597)
T ss_dssp             CTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC
T ss_pred             CcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC
Confidence            777777654   24556777888888777663     34456788888888887643322 2  2578888888888875


Q ss_pred             ccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCccccc
Q 038552          342 ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS  421 (659)
Q Consensus       342 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  421 (659)
                        +..+..++.+. .|++++|.+.+..|..+..+++|++|+|++|.+++ +|..+..+++|++|+|++|.+. .+|..+.
T Consensus       247 --~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~  321 (597)
T 3oja_B          247 --TAWLLNYPGLV-EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP  321 (597)
T ss_dssp             --CGGGGGCTTCS-EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             --ChhhccCCCCC-EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence              36677888887 88888888888888889999999999999999986 4666778999999999999998 5677788


Q ss_pred             CCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccCCCC
Q 038552          422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGIDEL  491 (659)
Q Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~  491 (659)
                      .+++|+.|++++|.+++..   +..+++|+.|++++|++.|.++. ..+..+....+.+++..|+.....
T Consensus       322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~~~  387 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDYQL  387 (597)
T ss_dssp             HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTCEE
T ss_pred             cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcchhc
Confidence            8999999999999998652   66788999999999999886532 345556666778888888764433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.9e-33  Score=286.15  Aligned_cols=335  Identities=18%  Similarity=0.209  Sum_probs=252.0

Q ss_pred             CCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCE
Q 038552          101 NISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW  180 (659)
Q Consensus       101 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  180 (659)
                      .+.++++|+++++.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|+.+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            3578888888888887 777776657888888888888888776777888888888888888888777777888888888


Q ss_pred             EECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCee
Q 038552          181 LNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIAL  260 (659)
Q Consensus       181 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  260 (659)
                      |++++|.++...      ...+..+++|++|++++|.+.                         +..+..+..+++|+.|
T Consensus       122 L~L~~n~l~~l~------~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L  170 (390)
T 3o6n_A          122 LVLERNDLSSLP------RGIFHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNL  170 (390)
T ss_dssp             EECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCC-------------------------BCCTTTTSSCTTCCEE
T ss_pred             EECCCCccCcCC------HHHhcCCCCCcEEECCCCccC-------------------------ccChhhccCCCCCCEE
Confidence            888888776321      112345566666666655544                         3344456677777777


Q ss_pred             ecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccc
Q 038552          261 TMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLT  340 (659)
Q Consensus       261 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  340 (659)
                      ++++|.+++.   .+..+++|+.|++++|.+.+     +...++|++|++++|.+... |..  ..++|+.|++++|.++
T Consensus       171 ~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~  239 (390)
T 3o6n_A          171 QLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLT  239 (390)
T ss_dssp             ECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCC
T ss_pred             ECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCc
Confidence            7777777654   24567788888888887763     33446788888888887744 322  2467888888888887


Q ss_pred             cccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccc
Q 038552          341 GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSL  420 (659)
Q Consensus       341 ~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  420 (659)
                      +.  ..+..++.++ +|++++|.+.+..|..+..+++|++|+|++|++++ +|..+..+++|++|++++|.+. .+|..+
T Consensus       240 ~~--~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~  314 (390)
T 3o6n_A          240 DT--AWLLNYPGLV-EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQ  314 (390)
T ss_dssp             CC--GGGGGCTTCS-EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred             cc--HHHcCCCCcc-EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccc
Confidence            53  5677788887 88888888888888889999999999999999985 4556678899999999999998 556678


Q ss_pred             cCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCccc
Q 038552          421 SSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGG  487 (659)
Q Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  487 (659)
                      ..+++|+.|++++|.++...   +..+++|+.|++++|++.+.... ..+..+....+.+++..|..
T Consensus       315 ~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          315 PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             cccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence            88999999999999998652   67788999999999999875432 33455556666777777753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.1e-32  Score=274.67  Aligned_cols=307  Identities=25%  Similarity=0.322  Sum_probs=201.7

Q ss_pred             ccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCC
Q 038552           99 ICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNL  178 (659)
Q Consensus        99 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  178 (659)
                      +..+++|++|+++++.+. .++. +. .+++|++|++++|.+++. +. +..+++|++|++++|.+++.  ..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             chhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            345666677777766665 4443 32 466666666666666643 22 66666666666666666542  246666666


Q ss_pred             CEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcC
Q 038552          179 SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLI  258 (659)
Q Consensus       179 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  258 (659)
                      ++|++++|.+...        ..+..+++|++|++++|...                         ..+ ..+..+++|+
T Consensus       113 ~~L~l~~n~i~~~--------~~~~~l~~L~~L~l~~n~~~-------------------------~~~-~~~~~l~~L~  158 (347)
T 4fmz_A          113 RELYLNEDNISDI--------SPLANLTKMYSLNLGANHNL-------------------------SDL-SPLSNMTGLN  158 (347)
T ss_dssp             SEEECTTSCCCCC--------GGGTTCTTCCEEECTTCTTC-------------------------CCC-GGGTTCTTCC
T ss_pred             CEEECcCCcccCc--------hhhccCCceeEEECCCCCCc-------------------------ccc-cchhhCCCCc
Confidence            6666666665431        11455555555555555332                         222 2255666666


Q ss_pred             eeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcc
Q 038552          259 ALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNK  338 (659)
Q Consensus       259 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  338 (659)
                      +|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK  232 (347)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             EEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence            66666666654333  5666777777777776664322  6666777777777776664333  6666777777777777


Q ss_pred             cccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcc
Q 038552          339 LTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL  418 (659)
Q Consensus       339 l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  418 (659)
                      +++..+  +..++.++ +|++++|.+.+.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.+.+..+.
T Consensus       233 l~~~~~--~~~l~~L~-~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          233 ITDLSP--LANLSQLT-WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCCCGG--GTTCTTCC-EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             cCCCcc--hhcCCCCC-EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence            664322  56666666 677777777643  4577888888899988888764  4578888899999999988888888


Q ss_pred             cccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552          419 SLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      .+..+++|+.|++++|++++..|  +..+++|+.|++++|+++
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            88888999999999998887765  778888999999988875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.9e-32  Score=296.85  Aligned_cols=309  Identities=20%  Similarity=0.208  Sum_probs=160.8

Q ss_pred             CCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEec
Q 038552           31 LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYL  110 (659)
Q Consensus        31 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  110 (659)
                      .+++.+++++|.+....+..|.++++|++|++++|.+.+..|..|+.+++|++|+|++|.+++..|..|+++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            45555666555555444444555556666666655555555555555666666666665555555555555555555555


Q ss_pred             cCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCC
Q 038552          111 PFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM  190 (659)
Q Consensus       111 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  190 (659)
                      ++|.++ .+|..++..+++|++|++++|.+++..|..+.++++|++|++++|.+++..   ++.+++|+.|++++|.+++
T Consensus       131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            555555 444444334555555555555555555555555555555555555554321   3334445555555444432


Q ss_pred             CCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC
Q 038552          191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT  270 (659)
Q Consensus       191 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  270 (659)
                                 +...++|+.|+++                         +|.++...+ .  ..++|+.|++++|.+++ 
T Consensus       207 -----------l~~~~~L~~L~ls-------------------------~n~l~~~~~-~--~~~~L~~L~L~~n~l~~-  246 (597)
T 3oja_B          207 -----------LAIPIAVEELDAS-------------------------HNSINVVRG-P--VNVELTILKLQHNNLTD-  246 (597)
T ss_dssp             -----------EECCTTCSEEECC-------------------------SSCCCEEEC-S--CCSCCCEEECCSSCCCC-
T ss_pred             -----------ccCCchhheeecc-------------------------CCccccccc-c--cCCCCCEEECCCCCCCC-
Confidence                       1112233333333                         333331111 1  11345555555555554 


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhc
Q 038552          271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSI  350 (659)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  350 (659)
                       +..+..+++|+.|++++|.+.+..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++          
T Consensus       247 -~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~----------  314 (597)
T 3oja_B          247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL----------  314 (597)
T ss_dssp             -CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC----------
T ss_pred             -ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC----------
Confidence             2445555556666666665555555555555566666666555553 3444444555555555555554          


Q ss_pred             ccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCC
Q 038552          351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG  414 (659)
Q Consensus       351 ~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  414 (659)
                                      .+|..+..+++|++|+|++|.+++..   +..+++|++|++++|.+.+
T Consensus       315 ----------------~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          315 ----------------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             ----------------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             ----------------ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence                            33444455556666666666655331   4455666666666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1e-31  Score=273.00  Aligned_cols=305  Identities=25%  Similarity=0.407  Sum_probs=174.4

Q ss_pred             CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038552           29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWI  108 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  108 (659)
                      .+++|+.|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++. + .++..+++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred             hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence            44455555555555542 22 245555555555555555332 22 5555555555555555542 2 235555555555


Q ss_pred             eccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCC
Q 038552          109 YLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL  188 (659)
Q Consensus       109 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  188 (659)
                      ++++|.+. .++. + ..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+
T Consensus       116 ~l~~n~i~-~~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          116 YLNEDNIS-DISP-L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             ECTTSCCC-CCGG-G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             ECcCCccc-Cchh-h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            55555554 3333 2 245555555555554333322 25555555555555555543332  45555555555555554


Q ss_pred             CCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCC
Q 038552          189 GMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH  268 (659)
Q Consensus       189 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  268 (659)
                      ...        ..+..+++|+.|++++|.+.+..+  +..+. +|+.|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       190 ~~~--------~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  256 (347)
T 4fmz_A          190 EDI--------SPLASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS  256 (347)
T ss_dssp             CCC--------GGGGGCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccc--------ccccCCCccceeecccCCCCCCch--hhcCC-cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence            321        114455555666666555553322  33332 56666666666654322  667777777777777776


Q ss_pred             CCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhh
Q 038552          269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLL  348 (659)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  348 (659)
                      +.  +.+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..|  +.
T Consensus       257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~  330 (347)
T 4fmz_A          257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA  330 (347)
T ss_dssp             CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred             CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence            53  4567777788888888777753  346777788888888887777777777777788888888887775544  66


Q ss_pred             hcccccceecccccccc
Q 038552          349 SITTLTLSLDLSNNLLN  365 (659)
Q Consensus       349 ~~~~l~~~L~l~~n~l~  365 (659)
                      .++.+. .|++++|.++
T Consensus       331 ~l~~L~-~L~l~~N~i~  346 (347)
T 4fmz_A          331 SLSKMD-SADFANQVIK  346 (347)
T ss_dssp             GCTTCS-EESSSCC---
T ss_pred             hhhccc-eeehhhhccc
Confidence            677777 7888877764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1e-32  Score=274.91  Aligned_cols=255  Identities=31%  Similarity=0.491  Sum_probs=235.3

Q ss_pred             CCCcEEEccCCcccc--ccChhHHhccccCCEEEccc-CcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCc
Q 038552          206 SSLKVISLYANQFGG--ELPHSIANLSSTMTDFRIGA-NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQ  282 (659)
Q Consensus       206 ~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  282 (659)
                      .+++.|++++|.+.+  .+|..+..+. +|+.|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            468888888888888  7888888876 899999995 889989999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCC-CCCEEeCCCcccccccchhhhhcccccceecccc
Q 038552          283 QLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQ-ILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN  361 (659)
Q Consensus       283 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~  361 (659)
                      +|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+..+. ++ .|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~-~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA-FVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS-EEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc-EEECcC
Confidence            999999999999999999999999999999999999999999998 999999999999999999999887 77 999999


Q ss_pred             ccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccch
Q 038552          362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIP  441 (659)
Q Consensus       362 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  441 (659)
                      |.+.+..|..+..+++|++|+|++|.+++.+|. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            999999999999999999999999999977665 8889999999999999999999999999999999999999999998


Q ss_pred             hhhcCCCCCCeeeCcCCcCcccCC
Q 038552          442 EFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       442 ~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      .. ..+++|+.+++++|+..+..|
T Consensus       286 ~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CC-ccccccChHHhcCCCCccCCC
Confidence            86 889999999999999554433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=4.5e-35  Score=310.26  Aligned_cols=386  Identities=15%  Similarity=0.129  Sum_probs=212.7

Q ss_pred             CCCcEEEccCCccCcccccc-cCCCCCCCEEEeecCcCCc----cCcccccCCCCCCEEeccCccccccChHHHhcCCC-
Q 038552           55 SALKVFYIIGNSLGGKIPTT-LGLLRNLVDLNVGENRFSG----MFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLP-  128 (659)
Q Consensus        55 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-  128 (659)
                      ++|++|++++|.+....... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+...+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            34555666655553322222 4556666666666666653    24455666677777777777666444444444454 


Q ss_pred             ---CCcEEEccCCcCCc----ccChhccCCCCCCEEEccCCCCcccccccc-----CCCCCCCEEECCCCCCCCCCCCCc
Q 038552          129 ---NLKALAIGGNNFFG----SIPNSLSNASNLEILDLTSNQLKGKVSIDF-----SSLKNLSWLNLEQNNLGMGTANDL  196 (659)
Q Consensus       129 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~  196 (659)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.++.....  
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--  160 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE--  160 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence               57777777777763    446677788888888888887765433322     2355788888888877642211  


Q ss_pred             cccccccCCCCCcEEEccCCccccccChhHHhc----cccCCEEEcccCccccc----CCcccccCCCcCeeecccccCC
Q 038552          197 DFVTFLTNCSSLKVISLYANQFGGELPHSIANL----SSTMTDFRIGANQISGT----IPPGIRNLVNLIALTMEINKLH  268 (659)
Q Consensus       197 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~  268 (659)
                      .+...+..+++|++|++++|.+.+..+..+...    ..+|+.|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence            234455667778888888877665433333321    12455555555555432    2333444455555555555443


Q ss_pred             CCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccc----cCccCcCCCCCCEEeCCCcccccccc
Q 038552          269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGN----IPSSLGNCQILRMFNASRNKLTGALP  344 (659)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~  344 (659)
                      +.....+.                   +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+
T Consensus       241 ~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          241 DVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             hHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence            22110000                   11112344455555555544432    33334444555555555555443322


Q ss_pred             hhhhhc-----ccccceeccccccccCC----CccccccCCCCceeecCCCcccccCCccccC-----CCCCCeEECCCC
Q 038552          345 HQLLSI-----TTLTLSLDLSNNLLNGS----LPLQVGNLKNLVKLDISGNQFSGVIPVTLSA-----CVSLEYLNISRN  410 (659)
Q Consensus       345 ~~~~~~-----~~l~~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~l~~n  410 (659)
                      ..+...     +.++ .|++++|.+++.    ++..+..+++|++|+|++|.+++..+..+..     .++|++|++++|
T Consensus       302 ~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          302 RLLCETLLEPGCQLE-SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             HHHHHHHTSTTCCCC-EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHhccCCccce-eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            222221     3444 555555555443    3445566677777777777776554433332     567777777777


Q ss_pred             CCCC----CCcccccCCCCCCEEECCCCcccccchhh----hc-CCCCCCeeeCcCCcCcc
Q 038552          411 FFHG----IIPLSLSSLKSIKEFNVSSNNLSGLIPEF----LK-NLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       411 ~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~-~l~~L~~l~l~~n~l~~  462 (659)
                      .+++    .+|..+..+++|+.|++++|++++.....    +. ...+|+.|++.++.+..
T Consensus       381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            7775    56666777777888888887776542222    21 23457777776666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.1e-34  Score=307.38  Aligned_cols=395  Identities=17%  Similarity=0.134  Sum_probs=257.7

Q ss_pred             CCCCCEEEccCCcccccCchh-hcCCCCCcEEeccccCCCc----cccccccCCCCCcEEEccCCccCccccccc-CCCC
Q 038552            6 YSNLIELRVSKNKLEGQIPEE-IGSLLNLQTLAIDFNYLTG----QLPDFVGNLSALKVFYIIGNSLGGKIPTTL-GLLR   79 (659)
Q Consensus         6 ~~~L~~L~ls~n~~~~~~~~~-~~~~~~L~~L~ls~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~   79 (659)
                      .++|++|++++|.+++..... +..+++|++|++++|.+.+    .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            367899999999988654444 7889999999999999885    356778899999999999999865444333 3454


Q ss_pred             ----CCCEEEeecCcCCc----cCcccccCCCCCCEEeccCccccccChHHHh----cCCCCCcEEEccCCcCCcc----
Q 038552           80 ----NLVDLNVGENRFSG----MFPRSICNISSLEWIYLPFNRFSGSLPLDIA----VNLPNLKALAIGGNNFFGS----  143 (659)
Q Consensus        80 ----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~~~~~----  143 (659)
                          +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.    ...++|++|++++|.+++.    
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                79999999999884    4688899999999999999998754444333    2356799999999988763    


Q ss_pred             cChhccCCCCCCEEEccCCCCccccccccC-----CCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCcc
Q 038552          144 IPNSLSNASNLEILDLTSNQLKGKVSIDFS-----SLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF  218 (659)
Q Consensus       144 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  218 (659)
                      ++..+..+++|++|++++|.+++.....+.     ..++|++|++++|.++.....  .++..+..+++|++|++++|.+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--DLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--HHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH--HHHHHHHhCCCccEEeccCCcC
Confidence            355677789999999999988765444443     356888888888877642110  1345566677777777777766


Q ss_pred             ccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC----CCccccCCCCCcEEEccCCCCCCC
Q 038552          219 GGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT----IPDTIGELKNLQQLSLYNNSLQGS  294 (659)
Q Consensus       219 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~  294 (659)
                      .+.....+..                    ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       240 ~~~~~~~l~~--------------------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          240 GDVGMAELCP--------------------GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHHHHHHH--------------------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             ChHHHHHHHH--------------------HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            5322211111                    1112355666666666666543    344455566666666666665432


Q ss_pred             CCcccc-----CCCCCcEEEccCCccccc----cCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccccccc
Q 038552          295 IPSSLG-----NLTKLVELPLSYNNLQGN----IPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN  365 (659)
Q Consensus       295 ~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~  365 (659)
                      .+..+.     ..++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..                
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~----------------  363 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ----------------  363 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH----------------
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH----------------
Confidence            222221     224666666666665543    3334445556666666666554332222211                


Q ss_pred             CCCccccc-cCCCCceeecCCCcccc----cCCccccCCCCCCeEECCCCCCCCCCccc----cc-CCCCCCEEECCCCc
Q 038552          366 GSLPLQVG-NLKNLVKLDISGNQFSG----VIPVTLSACVSLEYLNISRNFFHGIIPLS----LS-SLKSIKEFNVSSNN  435 (659)
Q Consensus       366 ~~~~~~l~-~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~  435 (659)
                           .+. ..++|++|+|++|.+++    .++..+..+++|++|++++|.+.+.....    +. ...+|+.|++.++.
T Consensus       364 -----~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          364 -----GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             -----HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             -----HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence                 111 14677778888877775    56666777788888888888776542222    21 23468888888877


Q ss_pred             ccccchhh
Q 038552          436 LSGLIPEF  443 (659)
Q Consensus       436 l~~~~~~~  443 (659)
                      .....++.
T Consensus       439 ~~~~~~~~  446 (461)
T 1z7x_W          439 WSEEMEDR  446 (461)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            76554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.5e-30  Score=259.47  Aligned_cols=288  Identities=19%  Similarity=0.254  Sum_probs=187.9

Q ss_pred             CCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEecc
Q 038552           32 NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLP  111 (659)
Q Consensus        32 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  111 (659)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..++++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            6888888888877 5665443  678888888888877666778888888888888888887778888888888888888


Q ss_pred             CccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcc--ccccccCCCCCCCEEECCCCCCC
Q 038552          112 FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG--KVSIDFSSLKNLSWLNLEQNNLG  189 (659)
Q Consensus       112 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~  189 (659)
                      +|.++ .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.++
T Consensus       109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            88887 6776543   678888888888887767778888888888888887753  55666777888888888887765


Q ss_pred             CCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC
Q 038552          190 MGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG  269 (659)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  269 (659)
                      ...       ..+.  ++|++|++++|.+.+                         ..+..+..+++|+.|++++|.+.+
T Consensus       185 ~l~-------~~~~--~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          185 TIP-------QGLP--PSLTELHLDGNKITK-------------------------VDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             SCC-------SSCC--TTCSEEECTTSCCCE-------------------------ECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             cCC-------cccc--ccCCEEECCCCcCCc-------------------------cCHHHhcCCCCCCEEECCCCcCce
Confidence            321       1111  455555555555443                         334445555555555555555555


Q ss_pred             CCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcC------CCCCCEEeCCCccccc--
Q 038552          270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGN------CQILRMFNASRNKLTG--  341 (659)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~~--  341 (659)
                      ..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..      .+.++.+++++|.+..  
T Consensus       231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence            44445555555555555555555 44555555555555555555555443333322      2455666666665542  


Q ss_pred             ccchhhhhcccccceeccccc
Q 038552          342 ALPHQLLSITTLTLSLDLSNN  362 (659)
Q Consensus       342 ~~~~~~~~~~~l~~~L~l~~n  362 (659)
                      ..|..+..+..+. .+++++|
T Consensus       310 i~~~~f~~~~~l~-~l~L~~N  329 (330)
T 1xku_A          310 IQPSTFRCVYVRA-AVQLGNY  329 (330)
T ss_dssp             SCGGGGTTCCCGG-GEEC---
T ss_pred             cCcccccccccee-EEEeccc
Confidence            2334444455555 5666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.7e-30  Score=258.62  Aligned_cols=288  Identities=21%  Similarity=0.255  Sum_probs=155.0

Q ss_pred             CCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEEC
Q 038552          104 SLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNL  183 (659)
Q Consensus       104 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (659)
                      +++.++++++.++ .+|..+   .++|+.|++++|.+++..+..+.++++|++|++++|.+++..+..|+.+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4666666666655 555443   245666666666665555555666666666666666665555555555566666655


Q ss_pred             CCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecc
Q 038552          184 EQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTME  263 (659)
Q Consensus       184 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  263 (659)
                      ++|.++.                               +|..+.   .+|++|++++|.+++..+..+..+++|+.|+++
T Consensus       110 ~~n~l~~-------------------------------l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  155 (332)
T 2ft3_A          110 SKNHLVE-------------------------------IPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG  155 (332)
T ss_dssp             CSSCCCS-------------------------------CCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred             CCCcCCc-------------------------------cCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence            5555432                               111111   134444444444443333344555555555555


Q ss_pred             cccCCC--CCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCccccc
Q 038552          264 INKLHG--TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG  341 (659)
Q Consensus       264 ~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  341 (659)
                      +|.+..  ..+..+..+ +|++|++++|.+.+ +|..+.  ++|++|++++|.+.+..                      
T Consensus       156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~----------------------  209 (332)
T 2ft3_A          156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIE----------------------  209 (332)
T ss_dssp             SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCC----------------------
T ss_pred             CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccC----------------------
Confidence            555532  334444444 55555555555543 222221  34444444444444333                      


Q ss_pred             ccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCccccc
Q 038552          342 ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLS  421 (659)
Q Consensus       342 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  421 (659)
                        +..+..++.++ .|++++|.+.+..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|.+++..+..|.
T Consensus       210 --~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          210 --LEDLLRYSKLY-RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             --TTSSTTCTTCS-CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             --HHHhcCCCCCC-EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence              34444444444 4555555555444555666666666777766666 4555666666777777777776655555554


Q ss_pred             C------CCCCCEEECCCCccc--ccchhhhcCCCCCCeeeCcCCc
Q 038552          422 S------LKSIKEFNVSSNNLS--GLIPEFLKNLSFMEFLDLSYNH  459 (659)
Q Consensus       422 ~------l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~l~l~~n~  459 (659)
                      .      .+.|+.|++++|++.  +..|..+..+++|+.+++++|.
T Consensus       286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            3      356777777777765  4556667777777777777663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.4e-30  Score=259.70  Aligned_cols=288  Identities=18%  Similarity=0.233  Sum_probs=209.6

Q ss_pred             CCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEecc
Q 038552           32 NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLP  111 (659)
Q Consensus        32 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  111 (659)
                      +++.++++++.++ .+|..+  .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..++++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            6888999888887 566655  3688999999988877777788899999999999998887778888889999999999


Q ss_pred             CccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcc--ccccccCCCCCCCEEECCCCCCC
Q 038552          112 FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG--KVSIDFSSLKNLSWLNLEQNNLG  189 (659)
Q Consensus       112 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~  189 (659)
                      +|.++ .+|..++   ++|++|++++|.+++..+..+.++++|+.|++++|.++.  ..+..+..+ +|+.|++++|.++
T Consensus       111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            88887 7776543   688888888888887666678888888888888888753  555666666 7777777777765


Q ss_pred             CCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCC
Q 038552          190 MGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG  269 (659)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  269 (659)
                      ...       ..+.  +                         +|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       186 ~l~-------~~~~--~-------------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          186 GIP-------KDLP--E-------------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             SCC-------SSSC--S-------------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             ccC-------cccc--C-------------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            421       1111  3                         45555555555555555667777777777777777777


Q ss_pred             CCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcC------CCCCCEEeCCCcccc--c
Q 038552          270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGN------CQILRMFNASRNKLT--G  341 (659)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~  341 (659)
                      ..+..+..+++|++|++++|++. .+|..+..+++|++|++++|.+++..+..|..      .+.|+.+++++|.+.  +
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence            66667777778888888877777 66666777778888888887777655555543      356777888888776  4


Q ss_pred             ccchhhhhcccccceecccccc
Q 038552          342 ALPHQLLSITTLTLSLDLSNNL  363 (659)
Q Consensus       342 ~~~~~~~~~~~l~~~L~l~~n~  363 (659)
                      ..|..+..++.++ .+++++|+
T Consensus       311 ~~~~~~~~l~~L~-~l~l~~n~  331 (332)
T 2ft3_A          311 VQPATFRCVTDRL-AIQFGNYK  331 (332)
T ss_dssp             SCGGGGTTBCCST-TEEC----
T ss_pred             cCcccccccchhh-hhhccccc
Confidence            5566666777776 67777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4e-29  Score=251.69  Aligned_cols=289  Identities=18%  Similarity=0.221  Sum_probs=219.7

Q ss_pred             CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552            8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG   87 (659)
Q Consensus         8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   87 (659)
                      +++.++++++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            7899999999987 5676664  689999999999998777789999999999999999988889999999999999999


Q ss_pred             cCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCc--ccChhccCCCCCCEEEccCCCCc
Q 038552           88 ENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFG--SIPNSLSNASNLEILDLTSNQLK  165 (659)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~  165 (659)
                      +|.++ .+|..+.  ++|++|++++|.++ .++...+..+++|+.|++++|.+..  ..+..+.++++|++|++++|.++
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            99998 5666554  79999999999998 5665555589999999999999864  66788999999999999999998


Q ss_pred             cccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccc
Q 038552          166 GKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG  245 (659)
Q Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  245 (659)
                      . +|..+.  ++|++|++++|.++.      ..+..+..+++|++|++++|.+.+..+.                     
T Consensus       185 ~-l~~~~~--~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------------------  234 (330)
T 1xku_A          185 T-IPQGLP--PSLTELHLDGNKITK------VDAASLKGLNNLAKLGLSFNSISAVDNG---------------------  234 (330)
T ss_dssp             S-CCSSCC--TTCSEEECTTSCCCE------ECTGGGTTCTTCCEEECCSSCCCEECTT---------------------
T ss_pred             c-CCcccc--ccCCEEECCCCcCCc------cCHHHhcCCCCCCEEECCCCcCceeChh---------------------
Confidence            5 444333  899999999999875      2345677788888888888877644333                     


Q ss_pred             cCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccC------CCCCcEEEccCCcccc--
Q 038552          246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGN------LTKLVELPLSYNNLQG--  317 (659)
Q Consensus       246 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--  317 (659)
                          .+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|..      .+.++.|++++|.+..  
T Consensus       235 ----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          235 ----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             ----TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             ----hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence                3445555666666666555 44555566666666666666666554444432      3567777777776652  


Q ss_pred             ccCccCcCCCCCCEEeCCCcc
Q 038552          318 NIPSSLGNCQILRMFNASRNK  338 (659)
Q Consensus       318 ~~~~~~~~~~~L~~L~l~~n~  338 (659)
                      ..|..|..+.+++.+++++|+
T Consensus       310 i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          310 IQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCGGGGTTCCCGGGEEC----
T ss_pred             cCccccccccceeEEEecccC
Confidence            345567777777777777663

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.2e-31  Score=289.96  Aligned_cols=427  Identities=14%  Similarity=0.070  Sum_probs=275.1

Q ss_pred             chhhcCCCCCcEEeccccCCC---ccccccc------------cCCCCCcEEEccCCccCcccccccCC-CC-CCCEEEe
Q 038552           24 PEEIGSLLNLQTLAIDFNYLT---GQLPDFV------------GNLSALKVFYIIGNSLGGKIPTTLGL-LR-NLVDLNV   86 (659)
Q Consensus        24 ~~~~~~~~~L~~L~ls~~~~~---~~~~~~~------------~~l~~L~~L~l~~n~l~~~~~~~~~~-l~-~L~~L~l   86 (659)
                      +..+..+++|+.|+++++...   +.+|..+            ..+++|++|+|++|.+.+..+..+.. ++ +|++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            344556677777777664321   1222222            26777888888877766555555554 33 4888888


Q ss_pred             ecCc-CCc-cCcccccCCCCCCEEeccCcccccc----ChHHHhcCCCCCcEEEccCCcCC----cccChhccCCCCCCE
Q 038552           87 GENR-FSG-MFPRSICNISSLEWIYLPFNRFSGS----LPLDIAVNLPNLKALAIGGNNFF----GSIPNSLSNASNLEI  156 (659)
Q Consensus        87 ~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~  156 (659)
                      ++|. ++. .++.....+++|++|++++|.+++.    ++. +...+++|++|++++|.++    +.++..+.++++|+.
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence            7775 211 1222334677888888887776543    222 2235778888888877776    233444567788888


Q ss_pred             EEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEE
Q 038552          157 LDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF  236 (659)
Q Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  236 (659)
                      |++++|.+.+ ++..+..+++|+.|+++......   ........+..+++|+.|+++.+. .+.+|..+.... +|++|
T Consensus       225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~-~L~~L  298 (592)
T 3ogk_B          225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDI---GMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAA-QIRKL  298 (592)
T ss_dssp             EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCT---TCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGG-GCCEE
T ss_pred             EeccCccHHH-HHHHHhhhhHHHhhccccccccc---chHHHHHHhhccccccccCccccc-hhHHHHHHhhcC-CCcEE
Confidence            8888877765 44567777888888876532211   001334556677788888887653 234555555544 78888


Q ss_pred             EcccCcccccCC-cccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccC-----------CCCCCC-CCccccCCC
Q 038552          237 RIGANQISGTIP-PGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYN-----------NSLQGS-IPSSLGNLT  303 (659)
Q Consensus       237 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~  303 (659)
                      ++++|.+++... ..+..+++|+.|+++++...+.++..+..+++|++|++++           +.+++. ++.....++
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  378 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ  378 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence            888887654433 3357788888888873322223333445678888888883           344432 222234588


Q ss_pred             CCcEEEccCCccccccCccCcC-CCCCCEEeCC----Ccccccc-----cchhhhhcccccceecccccc--ccCCCccc
Q 038552          304 KLVELPLSYNNLQGNIPSSLGN-CQILRMFNAS----RNKLTGA-----LPHQLLSITTLTLSLDLSNNL--LNGSLPLQ  371 (659)
Q Consensus       304 ~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~l~~~L~l~~n~--l~~~~~~~  371 (659)
                      +|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..++.++ .|++++|.  +++..+..
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~-~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR-RFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC-EEEEECCGGGCCHHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC-EEEEecCCCCccHHHHHH
Confidence            8999998888887766555554 7888999885    5666642     444466788887 88887543  55444444


Q ss_pred             cc-cCCCCceeecCCCccccc-CCccccCCCCCCeEECCCCCCCCC-CcccccCCCCCCEEECCCCcccccchhhh-cCC
Q 038552          372 VG-NLKNLVKLDISGNQFSGV-IPVTLSACVSLEYLNISRNFFHGI-IPLSLSSLKSIKEFNVSSNNLSGLIPEFL-KNL  447 (659)
Q Consensus       372 l~-~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l  447 (659)
                      +. .+++|++|+|++|++++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|+++......+ ..+
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~  537 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR  537 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCC
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhC
Confidence            44 488999999999998763 445567899999999999998654 34445678999999999999886543333 456


Q ss_pred             CCCCeeeCcCC
Q 038552          448 SFMEFLDLSYN  458 (659)
Q Consensus       448 ~~L~~l~l~~n  458 (659)
                      |.+....+..+
T Consensus       538 p~l~~~~~~~~  548 (592)
T 3ogk_B          538 PYWNIELIPSR  548 (592)
T ss_dssp             TTEEEEEECCC
T ss_pred             CCcEEEEecCc
Confidence            76665555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=4.8e-31  Score=288.58  Aligned_cols=408  Identities=12%  Similarity=0.089  Sum_probs=285.1

Q ss_pred             cccccccCCCCCcEEEccCCcc---CcccccccC------------CCCCCCEEEeecCcCCccCcccccC-CC-CCCEE
Q 038552           46 QLPDFVGNLSALKVFYIIGNSL---GGKIPTTLG------------LLRNLVDLNVGENRFSGMFPRSICN-IS-SLEWI  108 (659)
Q Consensus        46 ~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~------------~l~~L~~L~l~~n~l~~~~~~~~~~-l~-~L~~L  108 (659)
                      ..+..+..+++|++|+++++..   .+.+|..++            .+++|++|+|++|.+++..+..+.. ++ +|++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            3445567788999999987642   133343333            6889999999999887666666665 34 49999


Q ss_pred             eccCcc-ccccChHHHhcCCCCCcEEEccCCcCCcc----cChhccCCCCCCEEEccCCCCc----cccccccCCCCCCC
Q 038552          109 YLPFNR-FSGSLPLDIAVNLPNLKALAIGGNNFFGS----IPNSLSNASNLEILDLTSNQLK----GKVSIDFSSLKNLS  179 (659)
Q Consensus       109 ~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~  179 (659)
                      ++++|. ++..-...+...+++|++|++++|.+++.    ++..+..+++|++|++++|.++    +.++..+.++++|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            998876 22111122233688999999999987655    3445667889999999998886    23444456788999


Q ss_pred             EEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccc---cccChhHHhccccCCEEEcccCcccccCCcccccCCC
Q 038552          180 WLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG---GELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVN  256 (659)
Q Consensus       180 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  256 (659)
                      +|++++|.+.+       ++..+..+++|+.|+++.....   +..+..+.... +++.+.+.++. .+.+|..+..+++
T Consensus       224 ~L~L~~~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~~~l~~~~~~~~~  294 (592)
T 3ogk_B          224 SVKVGDFEILE-------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR-KLCRLGLSYMG-PNEMPILFPFAAQ  294 (592)
T ss_dssp             EEECSSCBGGG-------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT-TCCEEEETTCC-TTTGGGGGGGGGG
T ss_pred             EEeccCccHHH-------HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc-cccccCccccc-hhHHHHHHhhcCC
Confidence            99999887653       4566778889999998753222   12223333333 78888887753 3356777788889


Q ss_pred             cCeeecccccCCCCCC-ccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccC-----------Cccccc-cCccC
Q 038552          257 LIALTMEINKLHGTIP-DTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSY-----------NNLQGN-IPSSL  323 (659)
Q Consensus       257 L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~-~~~~~  323 (659)
                      |++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++++           +.+++. ++...
T Consensus       295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~  374 (592)
T 3ogk_B          295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA  374 (592)
T ss_dssp             CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred             CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence            9999999888664433 3457889999999984332223344446688899999983           455533 22234


Q ss_pred             cCCCCCCEEeCCCcccccccchhhhh-cccccceeccc----cccccCC-----CccccccCCCCceeecCCCc--cccc
Q 038552          324 GNCQILRMFNASRNKLTGALPHQLLS-ITTLTLSLDLS----NNLLNGS-----LPLQVGNLKNLVKLDISGNQ--FSGV  391 (659)
Q Consensus       324 ~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~l~~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~  391 (659)
                      ..+++|++|++..|.+++..+..+.. ++.++ .|+++    .|.+++.     ++..+..+++|++|+|++|.  +++.
T Consensus       375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~-~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITNESLESIGTYLKNLC-DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCC-EEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             hhCccCeEEEeecCCccHHHHHHHHhhCCCCc-EEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            56888999999888888777777765 77787 88886    5667653     33446778999999997543  5555


Q ss_pred             CCcccc-CCCCCCeEECCCCCCCCC-CcccccCCCCCCEEECCCCccccc-chhhhcCCCCCCeeeCcCCcCccc
Q 038552          392 IPVTLS-ACVSLEYLNISRNFFHGI-IPLSLSSLKSIKEFNVSSNNLSGL-IPEFLKNLSFMEFLDLSYNHFEGE  463 (659)
Q Consensus       392 ~~~~~~-~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~l~l~~n~l~~~  463 (659)
                      .+..+. .+++|++|++++|.+++. ++..+.++++|+.|++++|.+++. ++..+..+++|+.|++++|+++..
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            444443 488899999999998763 444567889999999999998655 344556789999999999987643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.9e-28  Score=244.02  Aligned_cols=256  Identities=20%  Similarity=0.255  Sum_probs=198.0

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC--CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEE
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT--IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELP  309 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  309 (659)
                      +++.|++++|.++...+..+..+++|++|++++|.+...  .+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence            566666666666643333467778888888888877632  2455667788888888888877 4566677888888888


Q ss_pred             ccCCccccccC-ccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccC-CCccccccCCCCceeecCCCc
Q 038552          310 LSYNNLQGNIP-SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG-SLPLQVGNLKNLVKLDISGNQ  387 (659)
Q Consensus       310 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~  387 (659)
                      +++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++.++ +|++++|.+.+ ..|..+..+++|++|+|++|.
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC-EEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC-EEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            88888875544 4677888888888888888877777777788887 78888888876 567788899999999999999


Q ss_pred             ccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCC-CCCeeeCcCCcCcccCCC
Q 038552          388 FSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLS-FMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       388 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~l~l~~n~l~~~~p~  466 (659)
                      +++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..++ +|+.|++++|++.+.++.
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            9988888999999999999999999988777889999999999999999998888888885 899999999999887653


Q ss_pred             CC---ccCCcccccccCCCCCcccCC
Q 038552          467 KG---VFSNKTKISLQGNVKLCGGID  489 (659)
Q Consensus       467 ~~---~~~~~~~~~~~~n~~lc~~~~  489 (659)
                      ..   .......+....+...|..+.
T Consensus       267 ~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          267 QSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             HHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             HHHHHHHHhhhhhhccccccccCCch
Confidence            21   122333444555666775543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.2e-27  Score=239.53  Aligned_cols=224  Identities=19%  Similarity=0.300  Sum_probs=189.4

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      .++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            5677777777776 56777777888888888888777 67777778888888888888877 667778888888888888


Q ss_pred             CCccccccCccCcC---------CCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceee
Q 038552          312 YNNLQGNIPSSLGN---------CQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD  382 (659)
Q Consensus       312 ~n~l~~~~~~~~~~---------~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~  382 (659)
                      +|.+.+.+|..+..         +++|++|++++|.++ .+|..+..++.++ .|++++|.+.+ +|..+..+++|++|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~-~L~L~~N~l~~-l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK-SLKIRNSPLSA-LGPAIHHLPKLEELD  235 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCC-EEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCC-EEEccCCCCCc-CchhhccCCCCCEEE
Confidence            87777777766554         888999999999888 7888888888888 89999999885 566789999999999


Q ss_pred             cCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552          383 ISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       383 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      |++|++.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|++.+.+|+.+..+++|+.+++..+.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=8.5e-28  Score=236.57  Aligned_cols=233  Identities=22%  Similarity=0.226  Sum_probs=149.3

Q ss_pred             CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCc-cccccCccCcCCCCCCEEe
Q 038552          255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNN-LQGNIPSSLGNCQILRMFN  333 (659)
Q Consensus       255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~  333 (659)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            345555555555554444455555555555555555554445555555555555555554 4433344555555555555


Q ss_pred             CCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCC
Q 038552          334 ASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH  413 (659)
Q Consensus       334 l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  413 (659)
                      +++|.+++..|..+..++.++ +|++++|.+.+..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQ-YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCEECHhHhhCCcCCC-EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            555555544455555555555 5666666665555556777788888888888887666666778888888888888888


Q ss_pred             CCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccC
Q 038552          414 GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGI  488 (659)
Q Consensus       414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  488 (659)
                      +..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.++.......+.......+...|..+
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence            777777888888888888888888776677788888888888888887766644333334444455566666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.5e-28  Score=245.70  Aligned_cols=282  Identities=18%  Similarity=0.166  Sum_probs=171.6

Q ss_pred             CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038552           29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWI  108 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  108 (659)
                      .|+.....+.+++.++ .+|..+.  ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            3455555666666666 4555443  467777777777765555567777777777777777776666667777777777


Q ss_pred             eccCccccccChHHHhcCCCCCcEEEccCCcCCcccC-hhccCCCCCCEEEccCC-CCccccccccCCCCCCCEEECCCC
Q 038552          109 YLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSN-QLKGKVSIDFSSLKNLSWLNLEQN  186 (659)
Q Consensus       109 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n  186 (659)
                      ++++|.++ .+|...+..+++|++|++++|+++...+ ..+.++++|++|++++| .+.+..+..|..+++|++|++++|
T Consensus       106 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             ECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            77777776 5555544467777777777777764333 35677777777777777 355555666777777777777777


Q ss_pred             CCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeeccccc
Q 038552          187 NLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINK  266 (659)
Q Consensus       187 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  266 (659)
                      .++.      ..+..+..+++|++|++++|.+. .+|..+....++|+.|++++|.+++..+..+..             
T Consensus       185 ~l~~------~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------  244 (353)
T 2z80_A          185 DLQS------YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------------  244 (353)
T ss_dssp             TCCE------ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------
T ss_pred             CcCc------cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccc-------------
Confidence            7654      23455667777777888777764 444443332335666666666665433222111             


Q ss_pred             CCCCCCccccCCCCCcEEEccCCCCCC----CCCccccCCCCCcEEEccCCccccccCcc-CcCCCCCCEEeCCCccccc
Q 038552          267 LHGTIPDTIGELKNLQQLSLYNNSLQG----SIPSSLGNLTKLVELPLSYNNLQGNIPSS-LGNCQILRMFNASRNKLTG  341 (659)
Q Consensus       267 l~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~  341 (659)
                              ......++.+++.++.+.+    .+|..+..+++|++|++++|.++ .+|.. |..+++|++|++++|++.+
T Consensus       245 --------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          245 --------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             --------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence                    1123334444444444443    24445556666666666666665 33333 4666666666666666664


Q ss_pred             cc
Q 038552          342 AL  343 (659)
Q Consensus       342 ~~  343 (659)
                      ..
T Consensus       316 ~~  317 (353)
T 2z80_A          316 SC  317 (353)
T ss_dssp             CH
T ss_pred             cC
Confidence            43

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.2e-27  Score=247.49  Aligned_cols=251  Identities=22%  Similarity=0.265  Sum_probs=206.9

Q ss_pred             cEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccC
Q 038552          209 KVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYN  288 (659)
Q Consensus       209 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  288 (659)
                      ..++.++..++ .+|..+   +.+++.|++++|.+++..+..+.++++|+.|++++|.+.+..+..|..+++|++|+|++
T Consensus        57 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             CEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            34444444444 344322   23677788888888777777888888899999988888887778888888999999999


Q ss_pred             CCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccch-hhhhcccccceeccccccccCC
Q 038552          289 NSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPH-QLLSITTLTLSLDLSNNLLNGS  367 (659)
Q Consensus       289 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~~L~l~~n~l~~~  367 (659)
                      |.+.+..+..|..+++|++|++++|.+....+..|..+++|+.|++++|...+.++. .+..++.++ .|++++|.+.+.
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-~L~L~~n~l~~~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK-YLNLGMCNIKDM  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC-EEECTTSCCSSC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC-EEECCCCccccc
Confidence            988877777788888999999999988866666788888999999988555445554 567788887 899999988754


Q ss_pred             CccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCC
Q 038552          368 LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL  447 (659)
Q Consensus       368 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  447 (659)
                       | .+..+++|++|+|++|++++..|..|.++++|++|++++|.+.+..+..|.++++|+.|+|++|.+++..+..+..+
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence             3 57889999999999999999889999999999999999999998888899999999999999999998888888999


Q ss_pred             CCCCeeeCcCCcCcccCCC
Q 038552          448 SFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       448 ~~L~~l~l~~n~l~~~~p~  466 (659)
                      ++|+.|++++|++.+.+..
T Consensus       290 ~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          290 RYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TTCCEEECCSSCEECSTTT
T ss_pred             cCCCEEEccCCCcCCCCCc
Confidence            9999999999999887764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=6.2e-27  Score=245.30  Aligned_cols=251  Identities=22%  Similarity=0.285  Sum_probs=208.2

Q ss_pred             cEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccC
Q 038552          209 KVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYN  288 (659)
Q Consensus       209 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  288 (659)
                      ..++..+..++ .+|..+.   ..++.|++++|.+++..+..+.++++|+.|+|++|.+.+..+..|..+++|++|+|++
T Consensus        46 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            34444444444 3444332   3677778888877777777888888899999999888877778888889999999999


Q ss_pred             CCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccch-hhhhcccccceeccccccccCC
Q 038552          289 NSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPH-QLLSITTLTLSLDLSNNLLNGS  367 (659)
Q Consensus       289 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~~L~l~~n~l~~~  367 (659)
                      |.+.+..+..|..+++|++|++++|.+....+..|..+++|+.|++++|...+.++. .+..++.++ .|++++|.+.. 
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~-~L~L~~n~l~~-  199 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR-YLNLAMCNLRE-  199 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC-EEECTTSCCSS-
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC-eecCCCCcCcc-
Confidence            988877777788889999999999988876677888889999999988654445544 577788887 89999998874 


Q ss_pred             CccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCC
Q 038552          368 LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL  447 (659)
Q Consensus       368 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  447 (659)
                      +| .+..+++|++|+|++|++++..|..|.++++|++|++++|.+.+..+..|.++++|+.|+|++|++++..+..+..+
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            44 58889999999999999999889999999999999999999999989999999999999999999998888888999


Q ss_pred             CCCCeeeCcCCcCcccCCC
Q 038552          448 SFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       448 ~~L~~l~l~~n~l~~~~p~  466 (659)
                      ++|+.|++++|++.+.+..
T Consensus       279 ~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          279 HHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             TTCCEEECCSSCEECSSTT
T ss_pred             cCCCEEEcCCCCccCCCCc
Confidence            9999999999999987764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=9.9e-28  Score=243.84  Aligned_cols=281  Identities=17%  Similarity=0.173  Sum_probs=179.1

Q ss_pred             CCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhcc
Q 038552          151 ASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLS  230 (659)
Q Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~  230 (659)
                      |+.....+.+++.++ .+|..+.  ++|++|++++|.++..      ....+..+++|++|++++|.++           
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~-----------   89 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYI------SNSDLQRCVNLQALVLTSNGIN-----------   89 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECTTSCCC-----------
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCccc------CHHHhccCCCCCEEECCCCccC-----------
Confidence            444455666666666 3333332  3666666666666531      1123445555555555555444           


Q ss_pred             ccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcEEE
Q 038552          231 STMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELP  309 (659)
Q Consensus       231 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~  309 (659)
                                    +..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++.+..+ ..+..+++|++|+
T Consensus        90 --------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           90 --------------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             --------------EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             --------------ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence                          3444455666666666666666665444446666677777777776664333 3566677777777


Q ss_pred             ccCCc-cccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcc
Q 038552          310 LSYNN-LQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF  388 (659)
Q Consensus       310 l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  388 (659)
                      +++|. +.+..+..+..+++|+.|++++|.+.+..|..+..++.++ +|++++|.+....+..+..+++|++|++++|.+
T Consensus       156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS-HLILHMKQHILLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE-EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred             CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC-eecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence            77663 4444455666667777777777777666666666666666 677777776533333345577788888888877


Q ss_pred             cccCCccc---cCCCCCCeEECCCCCCCC----CCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552          389 SGVIPVTL---SACVSLEYLNISRNFFHG----IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       389 ~~~~~~~~---~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      ++..+..+   ..++.++.++++++.+.+    .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus       235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            76544433   245677888888888775    35677888889999999999888544444688889999999999988


Q ss_pred             ccCCC
Q 038552          462 GEVPK  466 (659)
Q Consensus       462 ~~~p~  466 (659)
                      +.+|.
T Consensus       315 ~~~~~  319 (353)
T 2z80_A          315 CSCPR  319 (353)
T ss_dssp             CCHHH
T ss_pred             CcCCC
Confidence            87763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.4e-27  Score=234.84  Aligned_cols=226  Identities=21%  Similarity=0.306  Sum_probs=172.8

Q ss_pred             CCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEE
Q 038552          206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS  285 (659)
Q Consensus       206 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  285 (659)
                      ++++.|++++|.+. .+|..+..+. +|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..++.+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            34444444444444 4444444433 5556666666555 55666666667777777777666 5566666777777777


Q ss_pred             ccCCCCCCCCCcccc---------CCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccce
Q 038552          286 LYNNSLQGSIPSSLG---------NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS  356 (659)
Q Consensus       286 l~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~  356 (659)
                      +++|++.+.+|..+.         ++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..++.++ .
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~-~  233 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE-E  233 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC-E
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC-E
Confidence            777666666666554         3888888888888887 77778888888888888888888 4666788888887 8


Q ss_pred             eccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552          357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL  436 (659)
Q Consensus       357 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  436 (659)
                      |++++|.+.+.+|..+..+++|++|+|++|++.+.+|..+.++++|++|+|++|.+.+.+|..+.++++|+.+++..+.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            88888888888888999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             cc
Q 038552          437 SG  438 (659)
Q Consensus       437 ~~  438 (659)
                      ..
T Consensus       314 ~~  315 (328)
T 4fcg_A          314 AQ  315 (328)
T ss_dssp             CC
T ss_pred             HH
Confidence            53

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=5.7e-27  Score=230.64  Aligned_cols=252  Identities=19%  Similarity=0.192  Sum_probs=199.8

Q ss_pred             EEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCC
Q 038552          210 VISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNN  289 (659)
Q Consensus       210 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  289 (659)
                      .++.+++.++ .+|..+   ..+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4444444443 333322   236777777777777666667788888888888888888777888888888888888888


Q ss_pred             C-CCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCC
Q 038552          290 S-LQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSL  368 (659)
Q Consensus       290 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~  368 (659)
                      . +....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..++.++ .|++++|.+.+..
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT-HLFLHGNRISSVP  169 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCCEEC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc-EEECCCCcccccC
Confidence            7 7666677888888888888888888877777888888888888888888866666677888887 8899999888766


Q ss_pred             ccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCC
Q 038552          369 PLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLS  448 (659)
Q Consensus       369 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  448 (659)
                      +..+..+++|++|+|++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++....+.. ....
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~  248 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA  248 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence            667899999999999999999998999999999999999999999888888999999999999999998654321 1112


Q ss_pred             CCCeeeCcCCcCcccCCCC
Q 038552          449 FMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       449 ~L~~l~l~~n~l~~~~p~~  467 (659)
                      .++.+..+.+.+.+..|..
T Consensus       249 ~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHHHCCSEECCCBEEESGG
T ss_pred             HHHhcccccCccccCCchH
Confidence            3456667888888888754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.1e-27  Score=233.10  Aligned_cols=277  Identities=21%  Similarity=0.229  Sum_probs=178.0

Q ss_pred             CEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccc--cChhHHhcccc
Q 038552          155 EILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGE--LPHSIANLSST  232 (659)
Q Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~~  232 (659)
                      +.++.+++.++. +|..+  .++|++|++++|.++...      ...+..+++|++|++++|.+...  .+..+.     
T Consensus        10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-----   75 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLP------HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-----   75 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCC------TTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-----
T ss_pred             CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccC------HhHhhccccCCEEECCCCccCcccCcccccc-----
Confidence            467777777763 44333  257888888888776421      12356777888888887776521  233333     


Q ss_pred             CCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcEEEcc
Q 038552          233 MTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELPLS  311 (659)
Q Consensus       233 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~  311 (659)
                                          .+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus        76 --------------------~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  134 (306)
T 2z66_A           76 --------------------GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  134 (306)
T ss_dssp             --------------------SCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred             --------------------cccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence                                3444555555555444 233344555555555555555553332 345555555555555


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCccccc-ccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTG-ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG  390 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  390 (659)
                      +|.+.+..+..+..+++|++|++++|.+.+ ..|..+..++.++ .|++++|.+.+..|..+..+++|++|+|++|.+++
T Consensus       135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC-EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence            555555555555555556666666555554 3455555555555 56666666666666777888899999999999987


Q ss_pred             cCCccccCCCCCCeEECCCCCCCCCCcccccCCC-CCCEEECCCCcccccch--hhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552          391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK-SIKEFNVSSNNLSGLIP--EFLKNLSFMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~--~~l~~l~~L~~l~l~~n~l~~~~p~~  467 (659)
                      ..+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|++++..+  ....-+...+.+.+..+.+.+..|..
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence            7777888899999999999999988888888884 89999999999976532  22233344556677777787776643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.7e-26  Score=240.28  Aligned_cols=250  Identities=22%  Similarity=0.217  Sum_probs=220.2

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      ....++..+..++ .+|..+.  ++++.|++++|.+.+..+..|..+++|++|+|++|.+.+..+..|.++++|++|+|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3456777777776 4665543  689999999999999889999999999999999999998888999999999999999


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCC-ccccccCCCCceeecCCCcccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSL-PLQVGNLKNLVKLDISGNQFSG  390 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~  390 (659)
                      +|.+++..+..|..+++|++|++++|.+....+..+..++.++ .|++++|...+.+ +..+..+++|++|+|++|.+++
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM-RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc-EEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            9999977777899999999999999999976667888999998 9999995444444 4578999999999999999986


Q ss_pred             cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-Cc
Q 038552          391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GV  469 (659)
Q Consensus       391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~  469 (659)
                      . | .+..+++|++|+|++|.+.+..|..|.++++|+.|++++|.+++..|..+..+++|+.|++++|++++..+.. ..
T Consensus       211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            4 4 5889999999999999999999999999999999999999999999999999999999999999998655543 45


Q ss_pred             cCCcccccccCCCCCccc
Q 038552          470 FSNKTKISLQGNVKLCGG  487 (659)
Q Consensus       470 ~~~~~~~~~~~n~~lc~~  487 (659)
                      +++++.+++++||+.|..
T Consensus       289 l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CTTCCEEECCSSCEECST
T ss_pred             ccCCCEEEccCCCcCCCC
Confidence            678899999999999853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=5.9e-30  Score=280.14  Aligned_cols=397  Identities=18%  Similarity=0.154  Sum_probs=197.6

Q ss_pred             CCCCCcEEeccccCCCcccccccc-CCCCCcEEEccCC-ccCcc-cccccCCCCCCCEEEeecCcCCccCcccc----cC
Q 038552           29 SLLNLQTLAIDFNYLTGQLPDFVG-NLSALKVFYIIGN-SLGGK-IPTTLGLLRNLVDLNVGENRFSGMFPRSI----CN  101 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~  101 (659)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            445555555555555544444443 4555555555555 23211 22223345555555555555443322222    23


Q ss_pred             CCCCCEEeccCcc--ccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCC-------Ccccccccc
Q 038552          102 ISSLEWIYLPFNR--FSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ-------LKGKVSIDF  172 (659)
Q Consensus       102 l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~l  172 (659)
                      +++|++|++++|.  +.......+...+++|++|++++|.....++..+..+++|++|+++.+.       +.+ ++..+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence            4455555555553  1111111111234555555555552222244445555555555543332       111 12234


Q ss_pred             CCCCCCCEEE-CCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCccc
Q 038552          173 SSLKNLSWLN-LEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGI  251 (659)
Q Consensus       173 ~~l~~L~~L~-l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  251 (659)
                      .++++|+.+. +.....       ..++..+..+++|+.|++++|.+++.....                        .+
T Consensus       262 ~~~~~L~~Ls~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~------------------------~~  310 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVP-------AYLPAVYSVCSRLTTLNLSYATVQSYDLVK------------------------LL  310 (594)
T ss_dssp             HTCTTCCEEECCBTCCG-------GGGGGGHHHHTTCCEEECTTCCCCHHHHHH------------------------HH
T ss_pred             hcCCCcccccCCcccch-------hhHHHHHHhhCCCCEEEccCCCCCHHHHHH------------------------HH
Confidence            4445555442 211100       012222223444444444444433221111                        13


Q ss_pred             ccCCCcCeeecccccCCCC-CCccccCCCCCcEEEccC---------CCCCCCCCccc-cCCCCCcEEEccCCccccccC
Q 038552          252 RNLVNLIALTMEINKLHGT-IPDTIGELKNLQQLSLYN---------NSLQGSIPSSL-GNLTKLVELPLSYNNLQGNIP  320 (659)
Q Consensus       252 ~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~  320 (659)
                      ..+++|+.|++++| +.+. ++.....+++|++|++.+         +.+++.....+ ..+++|+.|.++.|.+++...
T Consensus       311 ~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~  389 (594)
T 2p1m_B          311 CQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL  389 (594)
T ss_dssp             TTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHH
T ss_pred             hcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHH
Confidence            34555555555555 2211 111122355566665532         22222111111 235666666666666654433


Q ss_pred             ccCc-CCCCCCEEeCC--C----ccccc-----ccchhhhhcccccceeccccccccCCCcccccc-CCCCceeecCCCc
Q 038552          321 SSLG-NCQILRMFNAS--R----NKLTG-----ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGN-LKNLVKLDISGNQ  387 (659)
Q Consensus       321 ~~~~-~~~~L~~L~l~--~----n~l~~-----~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~~n~  387 (659)
                      ..+. .+++|+.|+++  +    +.++.     .++..+..++.++ .|++++ .+++..+..+.. +++|++|+|++|.
T Consensus       390 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~-~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR-RLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC-EEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc-EEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence            3333 46667777766  2    33331     1222245566676 777766 555444444544 7889999999998


Q ss_pred             ccccCCccc-cCCCCCCeEECCCCCCCCCCcc-cccCCCCCCEEECCCCcccccchhhh-cCCCCCCeeeCcCCcC
Q 038552          388 FSGVIPVTL-SACVSLEYLNISRNFFHGIIPL-SLSSLKSIKEFNVSSNNLSGLIPEFL-KNLSFMEFLDLSYNHF  460 (659)
Q Consensus       388 l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~l~l~~n~l  460 (659)
                      +++..+..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..+|.|+...+..+..
T Consensus       468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            876555444 6688999999999998654433 33458899999999998865434444 5677776666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.4e-26  Score=238.16  Aligned_cols=250  Identities=19%  Similarity=0.205  Sum_probs=220.4

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      ....++..+..++ .+|..+.  ++++.|++++|.+.+..+..|..+++|++|+|++|.+.+..+..|.++++|++|+|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3456777777776 5676554  689999999999998888999999999999999999998888899999999999999


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCC-CccccccCCCCceeecCCCcccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS-LPLQVGNLKNLVKLDISGNQFSG  390 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~  390 (659)
                      +|.+++..+..|..+++|++|++++|.+....+..+..++.++ .|++++|+..+. .+..+.++++|++|+|++|.++.
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC-EeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            9999977677899999999999999999977777888999998 999999554444 44578999999999999999984


Q ss_pred             cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC-Cc
Q 038552          391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK-GV  469 (659)
Q Consensus       391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~-~~  469 (659)
                       +| .+..+++|++|+|++|.+.+..|..|.++++|+.|++++|.+++..+..|..+++|+.|++++|++++..+.. ..
T Consensus       200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             -cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence             44 5889999999999999999998999999999999999999999999999999999999999999999765543 45


Q ss_pred             cCCcccccccCCCCCccc
Q 038552          470 FSNKTKISLQGNVKLCGG  487 (659)
Q Consensus       470 ~~~~~~~~~~~n~~lc~~  487 (659)
                      +.+++.+++++||+.|..
T Consensus       278 l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          278 LHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CTTCCEEECCSSCEECSS
T ss_pred             ccCCCEEEcCCCCccCCC
Confidence            688899999999999954

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.8e-28  Score=241.28  Aligned_cols=246  Identities=22%  Similarity=0.201  Sum_probs=173.2

Q ss_pred             CCCCcEEEccCCccccccChhHHhccccCCEEEcccCccc-ccCCcccc-------cCCCcCeeecccccCCCCCCccc-
Q 038552          205 CSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS-GTIPPGIR-------NLVNLIALTMEINKLHGTIPDTI-  275 (659)
Q Consensus       205 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~~-  275 (659)
                      .++|+.|++++|.+  .+|..+..   .++.|++++|.+. ..+|..+.       ++++|++|++++|.+++.+|..+ 
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34455555666655  45554444   2555666666663 33444443       56777777777777777777665 


Q ss_pred             -cCCCCCcEEEccCCCCCCCCCccccCC-----CCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccc--cchhh
Q 038552          276 -GELKNLQQLSLYNNSLQGSIPSSLGNL-----TKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGA--LPHQL  347 (659)
Q Consensus       276 -~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~  347 (659)
                       ..+++|++|++++|.+.+. |..++.+     ++|++|++++|.+.+..|..+..+++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             6777777777777777765 6666655     7777777777777766667777777777777777776654  23333


Q ss_pred             --hhcccccceeccccccccCC--Cc-cccccCCCCceeecCCCcccccCC-ccccCCCCCCeEECCCCCCCCCCccccc
Q 038552          348 --LSITTLTLSLDLSNNLLNGS--LP-LQVGNLKNLVKLDISGNQFSGVIP-VTLSACVSLEYLNISRNFFHGIIPLSLS  421 (659)
Q Consensus       348 --~~~~~l~~~L~l~~n~l~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~  421 (659)
                        ..++.++ +|++++|.+.+.  ++ ..+..+++|++|+|++|++++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus       196 ~~~~l~~L~-~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          196 CPLKFPTLQ-VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             CTTSCTTCC-EEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             HhccCCCCC-EEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence              5666776 777777777631  22 234567889999999998887664 45667888999999999988 6666665


Q ss_pred             CCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc
Q 038552          422 SLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~  462 (659)
                        ++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus       274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence              7899999999999876 55 7888889999999998875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.1e-28  Score=270.23  Aligned_cols=373  Identities=14%  Similarity=0.107  Sum_probs=222.3

Q ss_pred             CCCCCCEEEeecCcCCccCccccc-CCCCCCEEeccCc-cccccChHHHhcCCCCCcEEEccCCcCCcccChhc----cC
Q 038552           77 LLRNLVDLNVGENRFSGMFPRSIC-NISSLEWIYLPFN-RFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSL----SN  150 (659)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l----~~  150 (659)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            344555555555555444333343 3555555555555 23211111222245555555555555443222222    24


Q ss_pred             CCCCCEEEccCCC--Cccc-cccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCc-------ccc
Q 038552          151 ASNLEILDLTSNQ--LKGK-VSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQ-------FGG  220 (659)
Q Consensus       151 l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~-------~~~  220 (659)
                      +++|+.|++++|.  +... +...+..+++|++|++++|....      .++..+..+++|+.|++..+.       +. 
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-  255 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE------KLATLLQRAPQLEELGTGGYTAEVRPDVYS-  255 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH------HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH------HHHHHHhcCCcceEcccccccCccchhhHH-
Confidence            4455555555554  1111 11111234556666665541110      233444455556666544332       22 


Q ss_pred             ccChhHHhccccCCEEE-cccCcccccCCcccccCCCcCeeecccccCCCCCC-ccccCCCCCcEEEccCCCCCCC-CCc
Q 038552          221 ELPHSIANLSSTMTDFR-IGANQISGTIPPGIRNLVNLIALTMEINKLHGTIP-DTIGELKNLQQLSLYNNSLQGS-IPS  297 (659)
Q Consensus       221 ~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~-~~~  297 (659)
                      .++..+.... +|+.+. +.... .+.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.
T Consensus       256 ~l~~~l~~~~-~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~  332 (594)
T 2p1m_B          256 GLSVALSGCK-ELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV  332 (594)
T ss_dssp             HHHHHHHTCT-TCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred             HHHHHHhcCC-CcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence            1223343333 566652 22211 12344455678899999999998764322 33568999999999998 4322 222


Q ss_pred             cccCCCCCcEEEccC---------CccccccCccC-cCCCCCCEEeCCCcccccccchhhh-hcccccceeccc--c---
Q 038552          298 SLGNLTKLVELPLSY---------NNLQGNIPSSL-GNCQILRMFNASRNKLTGALPHQLL-SITTLTLSLDLS--N---  361 (659)
Q Consensus       298 ~~~~l~~L~~L~l~~---------n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~~L~l~--~---  361 (659)
                      ....+++|++|++++         +.+++.....+ ..+++|+.|.+..|.+++..+..+. .++.++ .|+++  +   
T Consensus       333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~-~L~L~~~~~~~  411 (594)
T 2p1m_B          333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT-RFRLCIIEPKA  411 (594)
T ss_dssp             HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC-EEEEEESSTTC
T ss_pred             HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc-eeEeecccCCC
Confidence            334589999999944         34443322223 3489999999998998876666665 578888 89998  3   


Q ss_pred             -ccccCC-----CccccccCCCCceeecCCCcccccCCccccC-CCCCCeEECCCCCCCCCCcccc-cCCCCCCEEECCC
Q 038552          362 -NLLNGS-----LPLQVGNLKNLVKLDISGNQFSGVIPVTLSA-CVSLEYLNISRNFFHGIIPLSL-SSLKSIKEFNVSS  433 (659)
Q Consensus       362 -n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~  433 (659)
                       +.+++.     ++..+..+++|++|+|++ .+++..+..+.. +++|++|++++|.+++..+..+ .++++|+.|++++
T Consensus       412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~  490 (594)
T 2p1m_B          412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD  490 (594)
T ss_dssp             CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred             cccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence             455421     122367889999999988 676655555655 8999999999999976655555 6799999999999


Q ss_pred             Ccccccchh-hhcCCCCCCeeeCcCCcCc
Q 038552          434 NNLSGLIPE-FLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       434 n~l~~~~~~-~l~~l~~L~~l~l~~n~l~  461 (659)
                      |.+++.... ....+++|+.|++++|+++
T Consensus       491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          491 CPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            999665444 4456899999999999984

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.2e-26  Score=243.01  Aligned_cols=215  Identities=21%  Similarity=0.185  Sum_probs=123.9

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      +++.|++++|.+++..|..+..+++|+.|++++|.+++..|  +..+++|++|++++|.+.+..     ..++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence            45555555555554444555555666666666665554433  555566666666666555321     12556666666


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccc-cCCCCceeecCCCcccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVG-NLKNLVKLDISGNQFSG  390 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~  390 (659)
                      +|.+++..+.   .+++|+.|++++|.+++..|..+..++.+. .|++++|.+.+..|..+. .+++|++|+|++|.+++
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEE-EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCC-EEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            6666544332   235566666666666655555555566665 566666666655555554 56666666666666665


Q ss_pred             cCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552          391 VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       391 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      ..+  +..+++|++|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            422  2346666666666666665433 36666666666666666664 4555666666666666666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=8e-24  Score=227.68  Aligned_cols=268  Identities=26%  Similarity=0.276  Sum_probs=169.7

Q ss_pred             CCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEecc
Q 038552           32 NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLP  111 (659)
Q Consensus        32 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  111 (659)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.+. .+|.   .+++|++|++++|.++ .+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            4666666666665 4555443  56666666666664 3443   4566666666666665 3443   45666666666


Q ss_pred             CccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCC
Q 038552          112 FNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMG  191 (659)
Q Consensus       112 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  191 (659)
                      +|.++ .+|.    .+++|+.|++++|+++. +|..   +++|++|++++|.+++. +.   .+++|+.|++++|.++..
T Consensus       110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l  176 (622)
T 3g06_A          110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL  176 (622)
T ss_dssp             SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC
T ss_pred             CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC
Confidence            66665 4444    35566666666666664 3332   36677777777766642 22   245667777777766542


Q ss_pred             CCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCC
Q 038552          192 TANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTI  271 (659)
Q Consensus       192 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  271 (659)
                             +   ..+++|+.|++++|.+++ +|..    ..+|+.|++++|.++ .+|.   .+++|+.|++++|.+++ +
T Consensus       177 -------~---~~~~~L~~L~Ls~N~l~~-l~~~----~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-l  236 (622)
T 3g06_A          177 -------P---MLPSGLQELSVSDNQLAS-LPTL----PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-L  236 (622)
T ss_dssp             -------C---CCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-C
T ss_pred             -------c---ccCCCCcEEECCCCCCCC-CCCc----cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-C
Confidence                   1   234667777777776653 3321    236677777777666 3343   24678888888887775 3


Q ss_pred             CccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcc
Q 038552          272 PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSIT  351 (659)
Q Consensus       272 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  351 (659)
                      |   ..+++|+.|++++|.+. .+|.   .+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..|..+..++
T Consensus       237 p---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          237 P---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             C---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            4   45577888888888887 4444   5677888888888887 6677788888888888888888877776666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2e-26  Score=230.07  Aligned_cols=193  Identities=16%  Similarity=0.190  Sum_probs=100.8

Q ss_pred             cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552          251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR  330 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  330 (659)
                      +..+++|++|++++|.+++.     ...++|++|++++|.+.+..+.   .+++|++|++++|.+++..+..+..+++|+
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~  147 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQ  147 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred             hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCC
Confidence            44445555555555544421     1224555555555555433222   234455555555555544444455555555


Q ss_pred             EEeCCCcccccccchhhh-hcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCC
Q 038552          331 MFNASRNKLTGALPHQLL-SITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISR  409 (659)
Q Consensus       331 ~L~l~~n~l~~~~~~~~~-~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  409 (659)
                      +|++++|.+++..+..+. .++.++ .|++++|.+.+. + ....+++|++|+|++|++++. |..+..+++|++|++++
T Consensus       148 ~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~  223 (317)
T 3o53_A          148 YLDLKLNEIDTVNFAELAASSDTLE-HLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRN  223 (317)
T ss_dssp             EEECTTSCCCEEEGGGGGGGTTTCC-EEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTT
T ss_pred             EEECCCCCCCcccHHHHhhccCcCC-EEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcC
Confidence            555555555544444332 344444 555555555432 1 222356666666666666643 33356666666666666


Q ss_pred             CCCCCCCcccccCCCCCCEEECCCCccc-ccchhhhcCCCCCCeeeCc
Q 038552          410 NFFHGIIPLSLSSLKSIKEFNVSSNNLS-GLIPEFLKNLSFMEFLDLS  456 (659)
Q Consensus       410 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~l~l~  456 (659)
                      |.+. .+|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       224 N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             SCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             Cccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            6666 34555666666666666666665 4455555666666666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.2e-26  Score=231.16  Aligned_cols=224  Identities=20%  Similarity=0.231  Sum_probs=180.9

Q ss_pred             CcEEEccCCcc-ccccChhHH-------hccccCCEEEcccCcccccCCccc--ccCCCcCeeecccccCCCCCCccccC
Q 038552          208 LKVISLYANQF-GGELPHSIA-------NLSSTMTDFRIGANQISGTIPPGI--RNLVNLIALTMEINKLHGTIPDTIGE  277 (659)
Q Consensus       208 L~~L~l~~n~~-~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~  277 (659)
                      |+.|++++|.+ ...+|..+.       .+. +|++|++++|.+++.+|..+  ..+++|++|++++|.+++. |..++.
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            45555555555 234454443       333 78888888888888788776  8899999999999999877 777776


Q ss_pred             C-----CCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccc--cCccC--cCCCCCCEEeCCCccccc--ccchh
Q 038552          278 L-----KNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGN--IPSSL--GNCQILRMFNASRNKLTG--ALPHQ  346 (659)
Q Consensus       278 ~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--~~~~~L~~L~l~~n~l~~--~~~~~  346 (659)
                      +     ++|++|++++|++.+..+..++.+++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+++  .++..
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence            6     8999999999999988888999999999999999998765  23344  889999999999999983  23323


Q ss_pred             -hhhcccccceeccccccccCCCc-cccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCC
Q 038552          347 -LLSITTLTLSLDLSNNLLNGSLP-LQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK  424 (659)
Q Consensus       347 -~~~~~~l~~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  424 (659)
                       +..++.++ .|++++|.+.+..| ..+..+++|++|+|++|.++ .+|..+.  ++|++|++++|++++. |. +..++
T Consensus       223 ~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~  296 (312)
T 1wwl_A          223 LAAARVQLQ-GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP  296 (312)
T ss_dssp             HHHTTCCCS-EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred             HHhcCCCCC-EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence             34668888 89999999998775 45677899999999999998 6677666  8999999999999976 65 89999


Q ss_pred             CCCEEECCCCccccc
Q 038552          425 SIKEFNVSSNNLSGL  439 (659)
Q Consensus       425 ~L~~L~l~~n~l~~~  439 (659)
                      +|+.|++++|++++.
T Consensus       297 ~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          297 QVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEEEEECTTCTTTCC
T ss_pred             CCCEEeccCCCCCCC
Confidence            999999999999863

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=231.15  Aligned_cols=267  Identities=18%  Similarity=0.175  Sum_probs=189.4

Q ss_pred             CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552            8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG   87 (659)
Q Consensus         8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   87 (659)
                      +++..+++.+.+.......+..+++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34555666666664445556677788888888888887777788888888888888888865544  8888888888888


Q ss_pred             cCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccc
Q 038552           88 ENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK  167 (659)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  167 (659)
                      +|.+++.     ...++|++|++++|.++ .++..   .+++|+.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        89 ~n~l~~l-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQEL-----LVGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEE-----EECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CCccccc-----cCCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            8887732     23478888888888887 34332   467888888888888877777788888888888888888876


Q ss_pred             ccccc-CCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCccccc
Q 038552          168 VSIDF-SSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGT  246 (659)
Q Consensus       168 ~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  246 (659)
                      .+..+ ..+++|++|++++|.++..        .....+++|++|++++|.++                         + 
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~l~~L~~L~Ls~N~l~-------------------------~-  205 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV--------KGQVVFAKLKTLDLSSNKLA-------------------------F-  205 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE--------ECCCCCTTCCEEECCSSCCC-------------------------E-
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc--------ccccccccCCEEECCCCcCC-------------------------c-
Confidence            66665 3678888888888877542        22223556666666666554                         2 


Q ss_pred             CCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCC-CCCCccccCCCCCcEEEccCC-ccccccC
Q 038552          247 IPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ-GSIPSSLGNLTKLVELPLSYN-NLQGNIP  320 (659)
Q Consensus       247 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~  320 (659)
                      +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.++..+..+++|+.++++++ .+.+..|
T Consensus       206 l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          206 MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            2334566677777777777776 35666777777888888888777 566667777777777777744 3444433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=4e-24  Score=230.01  Aligned_cols=207  Identities=31%  Similarity=0.382  Sum_probs=125.8

Q ss_pred             CCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEE
Q 038552          206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS  285 (659)
Q Consensus       206 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  285 (659)
                      ++|++|++++|.+.+ +|.    ...+|+.|++++|.+++ +|..   +++|++|++++|.+++ +|.   .+++|+.|+
T Consensus       101 ~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~  167 (622)
T 3g06_A          101 PGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLW  167 (622)
T ss_dssp             TTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             CCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEE
Confidence            444455554444442 222    12245555555555553 3332   3667777777776664 232   345677777


Q ss_pred             ccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccccccc
Q 038552          286 LYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN  365 (659)
Q Consensus       286 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~  365 (659)
                      +++|.+.+ +|   ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++ .+|..   ++.+. .|++++|.+.
T Consensus       168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~-~L~Ls~N~L~  234 (622)
T 3g06_A          168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLK-ELIVSGNRLT  234 (622)
T ss_dssp             CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCC-EEECCSSCCS
T ss_pred             CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCC-EEEccCCccC
Confidence            77777764 44   345677777777777763 3432   356777777777766 34432   24454 6677777666


Q ss_pred             CCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhc
Q 038552          366 GSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLK  445 (659)
Q Consensus       366 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  445 (659)
                      + +|   ..+++|++|+|++|.++. +|.   .+++|++|+|++|.++ .+|..+.++++|+.|++++|++++.+|..+.
T Consensus       235 ~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          235 S-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             C-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             c-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            4 33   445677778888877773 443   5567778888888777 5566777778888888888887777776665


Q ss_pred             CC
Q 038552          446 NL  447 (659)
Q Consensus       446 ~l  447 (659)
                      .+
T Consensus       306 ~L  307 (622)
T 3g06_A          306 EI  307 (622)
T ss_dssp             HH
T ss_pred             hc
Confidence            44

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=9.7e-25  Score=213.60  Aligned_cols=211  Identities=22%  Similarity=0.257  Sum_probs=156.1

Q ss_pred             CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeC
Q 038552          255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNA  334 (659)
Q Consensus       255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  334 (659)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666666666666555556666667777777777666555556666777777777777766655566667777777777


Q ss_pred             CCcccccccchhhhhcccccceeccccccccCC-CccccccCCCCceeecCCCcccccCCccccCCCCCC----eEECCC
Q 038552          335 SRNKLTGALPHQLLSITTLTLSLDLSNNLLNGS-LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLE----YLNISR  409 (659)
Q Consensus       335 ~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~----~L~l~~  409 (659)
                      ++|.+.+..+..+..++.++ +|++++|.+.+. +|..+..+++|++|+|++|++++..+..+..+++|+    +|++++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLK-ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCC-EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCccccCchhcccCCCCC-EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            77776655554566666666 677777777653 577888888999999999998877777777777776    899999


Q ss_pred             CCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552          410 NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       410 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~  467 (659)
                      |.+.+..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|..
T Consensus       187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            999866665554 458999999999998877777888999999999999999888754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.6e-25  Score=232.26  Aligned_cols=222  Identities=22%  Similarity=0.250  Sum_probs=194.8

Q ss_pred             cCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEE
Q 038552          253 NLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMF  332 (659)
Q Consensus       253 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  332 (659)
                      .+++|+.|++++|.+++..|..|+.+++|++|+|++|.+.+..|  ++.+++|++|++++|.+++..     ..++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            45589999999999999888999999999999999999987665  899999999999999998543     23899999


Q ss_pred             eCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCcccc-CCCCCCeEECCCCC
Q 038552          333 NASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLS-ACVSLEYLNISRNF  411 (659)
Q Consensus       333 ~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n~  411 (659)
                      ++++|.+++..+..   ++.+. .|++++|.+.+..|..++.+++|++|+|++|.+++..|..+. .+++|++|+|++|.
T Consensus       105 ~L~~N~l~~~~~~~---l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          105 HAANNNISRVSCSR---GQGKK-NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             ECCSSCCCCEEECC---CSSCE-EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             ECcCCcCCCCCccc---cCCCC-EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            99999999766543   46676 899999999999899999999999999999999998888886 79999999999999


Q ss_pred             CCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccC
Q 038552          412 FHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGI  488 (659)
Q Consensus       412 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  488 (659)
                      +++..  .+..+++|+.|++++|.+++..|. +..+++|+.|++++|.+++..+....++++..+++++|+..|+..
T Consensus       181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             CCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             ccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence            99763  345699999999999999986554 889999999999999999755555667889999999999998654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2e-23  Score=203.31  Aligned_cols=206  Identities=21%  Similarity=0.239  Sum_probs=143.0

Q ss_pred             cCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCC
Q 038552          257 LIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR  336 (659)
Q Consensus       257 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  336 (659)
                      .+.++++++.++. +|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4455555555552 333222  4566666666666655555566666666666666666544444455666666666666


Q ss_pred             cccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCC
Q 038552          337 NKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII  416 (659)
Q Consensus       337 n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  416 (659)
                      |.+.+..+..+..++.++ .|++++|.+.+..+..+..+++|++|+|++|.+++..+..|..+++|++|++++|.+.+..
T Consensus        95 n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLA-ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcCCcCCHhHcccccCCC-EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            666544444445555665 6666666666666667788888888888888888776667888888999999998888777


Q ss_pred             cccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          417 PLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      +..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.++.
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            77788888999999999988877667788888899999998888877653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2e-23  Score=204.24  Aligned_cols=207  Identities=19%  Similarity=0.232  Sum_probs=168.1

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      +++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            57777777777776666677788888888888888877767778888888888888888887777778888888888888


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccc-cchhhhhcccccceeccccccccCCCccccccCCCCc----eeecCCC
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGA-LPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLV----KLDISGN  386 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~n  386 (659)
                      +|.+.+..+..+..+++|++|++++|.+.+. +|..+..++.++ .|++++|.+.+..+..+..+++|+    +|++++|
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC-EEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            8888866666788888888888888888753 578888888887 888888888877777777777777    8999999


Q ss_pred             cccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc
Q 038552          387 QFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI  440 (659)
Q Consensus       387 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (659)
                      .+++..+..+.. .+|++|++++|.+++..+..+..+++|+.|++++|++.+..
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            999766655544 58999999999999877777899999999999999998653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=5.3e-23  Score=201.81  Aligned_cols=206  Identities=23%  Similarity=0.264  Sum_probs=146.8

Q ss_pred             cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552          251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR  330 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  330 (659)
                      ++++++++.++++++.++. +|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            5566777777777777763 444332  577788888888776667777778888888888887775333  26677778


Q ss_pred             EEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCC
Q 038552          331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN  410 (659)
Q Consensus       331 ~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  410 (659)
                      .|++++|.+. .+|..+..++.++ .|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~-~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALT-VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCC-EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCC-cCchhhccCCCCC-EEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            8888877776 5666666666666 6777777777666666777777777777777777666666777777777777777


Q ss_pred             CCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccC
Q 038552          411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEV  464 (659)
Q Consensus       411 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~  464 (659)
                      ++.+..+..|..+++|+.|++++|.++ .+|..+...++|+.+++++|++.+.+
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            777665556677777777777777776 45666666667777777777776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=8.3e-23  Score=200.40  Aligned_cols=206  Identities=25%  Similarity=0.230  Sum_probs=182.0

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccc
Q 038552          274 TIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTL  353 (659)
Q Consensus       274 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l  353 (659)
                      .++.++++++++++++.+. .+|..+.  +.++.|++++|.+++..+..|..+++|+.|++++|.+++..+ . ..++.+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcC
Confidence            3677899999999999998 5665443  789999999999998888899999999999999999985433 2 678888


Q ss_pred             cceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCC
Q 038552          354 TLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSS  433 (659)
Q Consensus       354 ~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  433 (659)
                      + .|++++|.+. .+|..+..+++|++|+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus        80 ~-~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           80 G-TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             C-EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             C-EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            8 9999999998 6788899999999999999999988888999999999999999999988888889999999999999


Q ss_pred             CcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcc
Q 038552          434 NNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       434 n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~  486 (659)
                      |.+++..+..+..+++|+.|++++|++....+.......++.+.+.+||+.|.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence            99998777788999999999999999985444445556789999999999995

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.9e-22  Score=196.30  Aligned_cols=202  Identities=23%  Similarity=0.248  Sum_probs=145.1

Q ss_pred             CEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCC
Q 038552          234 TDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYN  313 (659)
Q Consensus       234 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  313 (659)
                      +.++++++.++ .+|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus        19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            34444444444 2333322  45666666666666555556666677777777777666555555666777777777777


Q ss_pred             ccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCC
Q 038552          314 NLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIP  393 (659)
Q Consensus       314 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  393 (659)
                      .+.+..+..|..+++|++|++++|.+++..+..+..++.++ .|++++|.+.+..+..+..+++|++|+|++|.+++..+
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT-YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC-EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            76655555566677777777777777655555566667776 67777777776666668889999999999999998777


Q ss_pred             ccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552          394 VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL  439 (659)
Q Consensus       394 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (659)
                      ..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            7889999999999999999987777788999999999999998654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.3e-23  Score=202.94  Aligned_cols=209  Identities=22%  Similarity=0.225  Sum_probs=104.1

Q ss_pred             cCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCE
Q 038552           28 GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEW  107 (659)
Q Consensus        28 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  107 (659)
                      ..+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+.++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            344455555555555442 2 2344555555555555554331  24455555555555555555444444555555555


Q ss_pred             EeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCC
Q 038552          108 IYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNN  187 (659)
Q Consensus       108 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (659)
                      |++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.
T Consensus       114 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          114 LVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            555555554 3333322245555555555555554444444555555555555555554444445555555555555555


Q ss_pred             CCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCC
Q 038552          188 LGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLV  255 (659)
Q Consensus       188 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  255 (659)
                      +++.      .+..+..+++|+.|++++|++.+..|        .++.+++..|.++|.+|.+++.+.
T Consensus       193 l~~~------~~~~~~~l~~L~~L~l~~N~~~~~~~--------~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          193 LKSV------PDGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CSCC------CTTTTTTCTTCCEEECCSSCBCCCTT--------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCcc------CHHHHhCCcCCCEEEccCCCccccCc--------HHHHHHHHHHhCCCcccCcccccC
Confidence            5431      12234445555555555555544332        344445555556666665555444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6.5e-23  Score=199.75  Aligned_cols=205  Identities=22%  Similarity=0.213  Sum_probs=156.3

Q ss_pred             cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552          251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR  330 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  330 (659)
                      ...+++|+.|++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            45666777777777766532  2466677777777777777642  3567777777777777777766666677777777


Q ss_pred             EEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCC
Q 038552          331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN  410 (659)
Q Consensus       331 ~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  410 (659)
                      +|++++|.+++..+..+..++.++ .|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLT-YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCC-EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            777777777765555566777776 7777777777666666788889999999999988777777888899999999999


Q ss_pred             CCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCC
Q 038552          411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       411 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~  467 (659)
                      .+.+..+..+..+++|+.|++++|++.+.       ++.|+.++++.|.++|.+|..
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            99888877788899999999999988754       557888889999999888854

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.4e-22  Score=201.67  Aligned_cols=227  Identities=18%  Similarity=0.173  Sum_probs=136.6

Q ss_pred             CCCcEEEccCCccccccChhH---HhccccCCEEEcccCcccccCCccc--ccCCCcCeeecccccCCCCCC----cccc
Q 038552          206 SSLKVISLYANQFGGELPHSI---ANLSSTMTDFRIGANQISGTIPPGI--RNLVNLIALTMEINKLHGTIP----DTIG  276 (659)
Q Consensus       206 ~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~  276 (659)
                      ..++.+.+..+.+.......+   ... .++++|++++|.+++..|..+  ..+++|++|++++|.+.+..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            357777877776643211111   111 247777777777776666666  667777777777777765443    2334


Q ss_pred             CCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccc--c--CccCcCCCCCCEEeCCCcccccccchhhhhccc
Q 038552          277 ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGN--I--PSSLGNCQILRMFNASRNKLTGALPHQLLSITT  352 (659)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  352 (659)
                      .+++|++|++++|.+.+..+..++.+++|++|++++|.+.+.  +  +..+..+++|++|++++|+++ .++..      
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~------  215 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGV------  215 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHH------
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHH------
Confidence            566677777777776666666666666677777766665431  1  122345566666666666554 11110      


Q ss_pred             ccceeccccccccCCCcc-ccccCCCCceeecCCCcccccCCccccCC---CCCCeEECCCCCCCCCCcccccCCCCCCE
Q 038552          353 LTLSLDLSNNLLNGSLPL-QVGNLKNLVKLDISGNQFSGVIPVTLSAC---VSLEYLNISRNFFHGIIPLSLSSLKSIKE  428 (659)
Q Consensus       353 l~~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  428 (659)
                                      +. .+..+++|++|+|++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.
T Consensus       216 ----------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~  276 (310)
T 4glp_A          216 ----------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRV  276 (310)
T ss_dssp             ----------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSC
T ss_pred             ----------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCE
Confidence                            11 13455667777777777766656555555   57777777777777 4455543  67777


Q ss_pred             EECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552          429 FNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       429 L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      |++++|++++. |. +..+++|+.|++++|+++
T Consensus       277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             EECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            77777777754 22 456677777777777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=6.1e-24  Score=218.69  Aligned_cols=212  Identities=19%  Similarity=0.260  Sum_probs=149.6

Q ss_pred             cccCCCcCeeeccccc---CCCCCCccc-------cCCCCCcEEEccCCCCCC----CCCccccCCCCCcEEEccCCccc
Q 038552          251 IRNLVNLIALTMEINK---LHGTIPDTI-------GELKNLQQLSLYNNSLQG----SIPSSLGNLTKLVELPLSYNNLQ  316 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~  316 (659)
                      +..+++|++|++++|.   +++.+|..+       ..+++|++|+|++|.+.+    .++..+..+++|++|+|++|.++
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            4456667777776653   333444433       567788888888887776    35566777788888888888776


Q ss_pred             cccCcc----CcCC---------CCCCEEeCCCcccc-cccc---hhhhhcccccceeccccccccC-----CCcccccc
Q 038552          317 GNIPSS----LGNC---------QILRMFNASRNKLT-GALP---HQLLSITTLTLSLDLSNNLLNG-----SLPLQVGN  374 (659)
Q Consensus       317 ~~~~~~----~~~~---------~~L~~L~l~~n~l~-~~~~---~~~~~~~~l~~~L~l~~n~l~~-----~~~~~l~~  374 (659)
                      +..+..    +..+         ++|++|++++|+++ +.++   ..+..++.++ .|++++|.+..     ..+..+..
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~L~~n~l~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC-EEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC-EEECcCCCCCHhHHHHHHHHHhhc
Confidence            433322    3333         77888888888876 3344   3556677777 78888887762     23336778


Q ss_pred             CCCCceeecCCCccc----ccCCccccCCCCCCeEECCCCCCCCC----Cccccc--CCCCCCEEECCCCcccc----cc
Q 038552          375 LKNLVKLDISGNQFS----GVIPVTLSACVSLEYLNISRNFFHGI----IPLSLS--SLKSIKEFNVSSNNLSG----LI  440 (659)
Q Consensus       375 l~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~  440 (659)
                      +++|++|+|++|.++    +.+|..+..+++|++|+|++|.+.+.    ++..+.  .+++|+.|++++|.+++    .+
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l  294 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  294 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence            888888888888885    45677788888888888888888765    455553  38888888888888887    46


Q ss_pred             hhhh-cCCCCCCeeeCcCCcCccc
Q 038552          441 PEFL-KNLSFMEFLDLSYNHFEGE  463 (659)
Q Consensus       441 ~~~l-~~l~~L~~l~l~~n~l~~~  463 (659)
                      |..+ .++++|+.|++++|++.+.
T Consensus       295 ~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          295 KTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHhcCCCceEEEccCCcCCcc
Confidence            7666 6678888888888887653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.2e-21  Score=194.93  Aligned_cols=231  Identities=14%  Similarity=0.110  Sum_probs=166.5

Q ss_pred             CCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhH--HhccccCCEEEcccCcccccCC----c
Q 038552          176 KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSI--ANLSSTMTDFRIGANQISGTIP----P  249 (659)
Q Consensus       176 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~----~  249 (659)
                      ..++.+.+.++.++....   ........+++|++|++++|.+.+..|..+  ..+. +|+.|++++|.+++..+    .
T Consensus        64 ~~l~~l~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLL---VGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             CCCCEEEECSCCCBHHHH---HHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHH
T ss_pred             cceeEEEEeCCcCCHHHH---HHHHHhcccCceeEEEeeCCEeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHH
Confidence            457888888776643111   111112234679999999999998888877  5554 89999999999997655    3


Q ss_pred             ccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCC--C--CccccCCCCCcEEEccCCccccccCc----
Q 038552          250 GIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS--I--PSSLGNLTKLVELPLSYNNLQGNIPS----  321 (659)
Q Consensus       250 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----  321 (659)
                      .+..+++|++|++++|.+.+..+..++.+++|++|++++|++.+.  +  +..++.+++|++|++++|.++. ++.    
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~  218 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA  218 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH
Confidence            445799999999999999988889999999999999999998642  1  2334789999999999999873 222    


Q ss_pred             cCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCC
Q 038552          322 SLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVS  401 (659)
Q Consensus       322 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  401 (659)
                      .+..+++|++|++++|.+++..|..+..+                      ..+++|++|+|++|+++ .+|..+.  ++
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~----------------------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~  273 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRC----------------------MWSSALNSLNLSFAGLE-QVPKGLP--AK  273 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSC----------------------CCCTTCCCEECCSSCCC-SCCSCCC--SC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhc----------------------cCcCcCCEEECCCCCCC-chhhhhc--CC
Confidence            24566777777777776664444333222                      11257777777777777 4555553  67


Q ss_pred             CCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccc
Q 038552          402 LEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSG  438 (659)
Q Consensus       402 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  438 (659)
                      |++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       274 L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          274 LRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            88888888888754 32 5677888888888887764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=2.7e-23  Score=211.51  Aligned_cols=231  Identities=19%  Similarity=0.224  Sum_probs=144.0

Q ss_pred             cCCEEEcccCcccccCC----cccccCC-CcCeeecccccCCCCCCccccCC-----CCCcEEEccCCCCCCCCCcc---
Q 038552          232 TMTDFRIGANQISGTIP----PGIRNLV-NLIALTMEINKLHGTIPDTIGEL-----KNLQQLSLYNNSLQGSIPSS---  298 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~---  298 (659)
                      +++.|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+.+..+..   
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            35555555555444333    3445555 66666666666665555544443     66777777777766554443   


Q ss_pred             -ccCC-CCCcEEEccCCccccccCccC----cC-CCCCCEEeCCCccccccc----chhhhhcc-cccceeccccccccC
Q 038552          299 -LGNL-TKLVELPLSYNNLQGNIPSSL----GN-CQILRMFNASRNKLTGAL----PHQLLSIT-TLTLSLDLSNNLLNG  366 (659)
Q Consensus       299 -~~~l-~~L~~L~l~~n~l~~~~~~~~----~~-~~~L~~L~l~~n~l~~~~----~~~~~~~~-~l~~~L~l~~n~l~~  366 (659)
                       +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.++...    +..+...+ .++ +|++++|.+++
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~-~L~Ls~n~l~~  181 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN-SLNLRGNNLAS  181 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC-EEECTTSCGGG
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc-EeeecCCCCch
Confidence             2333 677777777777665443332    23 246777777777776433    23333444 565 77777777776


Q ss_pred             CCccccc----cC-CCCceeecCCCccccc----CCccccC-CCCCCeEECCCCCCCCCCc----ccccCCCCCCEEECC
Q 038552          367 SLPLQVG----NL-KNLVKLDISGNQFSGV----IPVTLSA-CVSLEYLNISRNFFHGIIP----LSLSSLKSIKEFNVS  432 (659)
Q Consensus       367 ~~~~~l~----~l-~~L~~L~L~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~  432 (659)
                      ..+..+.    .+ ++|++|+|++|.+++.    ++..+.. .++|++|+|++|.+.+..+    ..+..+++|+.|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            6654433    34 5888888888888753    3344444 4588888888888876544    334677888899998


Q ss_pred             CCcccccch-------hhhcCCCCCCeeeCcCCcCccc
Q 038552          433 SNNLSGLIP-------EFLKNLSFMEFLDLSYNHFEGE  463 (659)
Q Consensus       433 ~n~l~~~~~-------~~l~~l~~L~~l~l~~n~l~~~  463 (659)
                      +|.+.+..+       ..+..+++|+.||+++|++...
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            888544332       3556777888888998887655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.6e-21  Score=186.09  Aligned_cols=180  Identities=21%  Similarity=0.270  Sum_probs=118.5

Q ss_pred             CcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCC
Q 038552          256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS  335 (659)
Q Consensus       256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  335 (659)
                      ..+.++++++.+. .+|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4556666666665 3343332  466666666666666666666666666666666666665555556666666666666


Q ss_pred             CcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCC
Q 038552          336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI  415 (659)
Q Consensus       336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  415 (659)
                      +|.++                         +..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|.+.+.
T Consensus        92 ~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  146 (251)
T 3m19_A           92 NNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI  146 (251)
T ss_dssp             TSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCccc-------------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence            65555                         33344556667777777777777766555667777777777777777766


Q ss_pred             CcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCccc
Q 038552          416 IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGE  463 (659)
Q Consensus       416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~  463 (659)
                      .+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            666677777777777777777766666677777777777777777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=4.8e-23  Score=208.06  Aligned_cols=251  Identities=21%  Similarity=0.255  Sum_probs=186.7

Q ss_pred             CcEEEccCCccccccChhHHhc-cccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC-CCccccCCCCCcEEE
Q 038552          208 LKVISLYANQFGGELPHSIANL-SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT-IPDTIGELKNLQQLS  285 (659)
Q Consensus       208 L~~L~l~~n~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~  285 (659)
                      ++.++++++.+.   +..+... ...++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            455566555544   2333332 13677888888877766554 55788899999998888765 677788889999999


Q ss_pred             ccCCCCCCCCCccccCCCCCcEEEccCC-cccc-ccCccCcCCCCCCEEeCCCc-ccccc-cchhhhhcc-cccceeccc
Q 038552          286 LYNNSLQGSIPSSLGNLTKLVELPLSYN-NLQG-NIPSSLGNCQILRMFNASRN-KLTGA-LPHQLLSIT-TLTLSLDLS  360 (659)
Q Consensus       286 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~-~l~~~L~l~  360 (659)
                      +++|.+.+..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ .++ +|+++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~-~L~l~  203 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT-QLNLS  203 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC-EEECC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC-EEEeC
Confidence            9999888777778888999999999998 5665 35666788889999999999 88754 567778888 887 89999


Q ss_pred             cc--ccc-CCCccccccCCCCceeecCCCc-ccccCCccccCCCCCCeEECCCCC-CCCCCcccccCCCCCCEEECCCCc
Q 038552          361 NN--LLN-GSLPLQVGNLKNLVKLDISGNQ-FSGVIPVTLSACVSLEYLNISRNF-FHGIIPLSLSSLKSIKEFNVSSNN  435 (659)
Q Consensus       361 ~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~  435 (659)
                      +|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| 
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            88  444 4556677889999999999998 777777788899999999999995 33222235788999999999998 


Q ss_pred             ccccchhhhcCC-CCCCeeeCcCCcCcccCCCC
Q 038552          436 LSGLIPEFLKNL-SFMEFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       436 l~~~~~~~l~~l-~~L~~l~l~~n~l~~~~p~~  467 (659)
                      ++..   .+..+ ..+..|++++|.+++..|..
T Consensus       283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          283 VPDG---TLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence            4432   23222 23566778999998877743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=5e-23  Score=211.86  Aligned_cols=251  Identities=16%  Similarity=0.208  Sum_probs=157.3

Q ss_pred             cCchhhcCCCCCcEEeccccCCCcccc----ccccCCCCCcEEEccCCc---cCccccccc-------CCCCCCCEEEee
Q 038552           22 QIPEEIGSLLNLQTLAIDFNYLTGQLP----DFVGNLSALKVFYIIGNS---LGGKIPTTL-------GLLRNLVDLNVG   87 (659)
Q Consensus        22 ~~~~~~~~~~~L~~L~ls~~~~~~~~~----~~~~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~l~   87 (659)
                      .++..+..+++|++|++++|.+.+..+    ..+..+++|++|+|++|.   +.+.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            456667778888888888888876533    346678888888888764   334445444       678888888888


Q ss_pred             cCcCCc----cCcccccCCCCCCEEeccCccccccChHHHhc---CC---------CCCcEEEccCCcCC-cccC---hh
Q 038552           88 ENRFSG----MFPRSICNISSLEWIYLPFNRFSGSLPLDIAV---NL---------PNLKALAIGGNNFF-GSIP---NS  147 (659)
Q Consensus        88 ~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~l---------~~L~~L~l~~n~~~-~~~~---~~  147 (659)
                      +|.+++    .+|..+..+++|++|++++|.+++..+..+..   .+         ++|++|++++|+++ ..++   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            888876    36667778888888888888776333333321   22         67777777777776 3333   34


Q ss_pred             ccCCCCCCEEEccCCCCcc-----ccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCcccccc
Q 038552          148 LSNASNLEILDLTSNQLKG-----KVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGEL  222 (659)
Q Consensus       148 l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  222 (659)
                      +..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++..+.  ..++..+..+++|++|++++|.+++..
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~--~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS--SALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH--HHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH--HHHHHHHccCCCcCEEECCCCCCchhh
Confidence            5667777777777777662     233356667777777777776642100  034445556666666666666655331


Q ss_pred             ChhHHhccccCCEEEcccCcccccCCccc--ccCCCcCeeecccccCCC----CCCccc-cCCCCCcEEEccCCCCCCCC
Q 038552          223 PHSIANLSSTMTDFRIGANQISGTIPPGI--RNLVNLIALTMEINKLHG----TIPDTI-GELKNLQQLSLYNNSLQGSI  295 (659)
Q Consensus       223 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~  295 (659)
                      ...                     ++..+  +.+++|+.|++++|.+++    .+|..+ ..+++|++|++++|++.+..
T Consensus       261 ~~~---------------------l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          261 AAA---------------------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHH---------------------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHH---------------------HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            111                     22233  225666666776666665    355555 44677777777777776554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.3e-22  Score=206.55  Aligned_cols=105  Identities=21%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             EEccCCcccccCchhhcCCCCCcEEeccccCCCcccc----ccccCCC-CCcEEEccCCccCcccccccCCC-----CCC
Q 038552           12 LRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLP----DFVGNLS-ALKVFYIIGNSLGGKIPTTLGLL-----RNL   81 (659)
Q Consensus        12 L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L   81 (659)
                      ++++.|.+++.+|..+....+|++|++++|.+.+..+    .++..++ +|++|++++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566666666666655555556666666666665444    5555666 66666666666655545444443     566


Q ss_pred             CEEEeecCcCCccCccccc----CC-CCCCEEeccCcccc
Q 038552           82 VDLNVGENRFSGMFPRSIC----NI-SSLEWIYLPFNRFS  116 (659)
Q Consensus        82 ~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~~~  116 (659)
                      ++|++++|.+++..+..+.    .+ ++|++|++++|.++
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            6666666666544444322    22 55666666665555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=3.8e-22  Score=201.39  Aligned_cols=254  Identities=17%  Similarity=0.179  Sum_probs=136.7

Q ss_pred             CCEEEccCCcccccCchhhcCC--CCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcc-cccccCCCCCCCEEE
Q 038552            9 LIELRVSKNKLEGQIPEEIGSL--LNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGK-IPTTLGLLRNLVDLN   85 (659)
Q Consensus         9 L~~L~ls~n~~~~~~~~~~~~~--~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~   85 (659)
                      +++++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            556666666554   3444444  5666666666666544443 34566666666666665443 555556666666666


Q ss_pred             eecCcCCccCcccccCCCCCCEEeccCc-ccccc-ChHHHhcCCCCCcEEEccCC-cCCcc-cChhccCCC-CCCEEEcc
Q 038552           86 VGENRFSGMFPRSICNISSLEWIYLPFN-RFSGS-LPLDIAVNLPNLKALAIGGN-NFFGS-IPNSLSNAS-NLEILDLT  160 (659)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~  160 (659)
                      +++|.+++..+..++.+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            6666665555556666666666666666 44432 333232 4566666666666 55432 344455555 66666666


Q ss_pred             CC--CCc-cccccccCCCCCCCEEECCCCC-CCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEE
Q 038552          161 SN--QLK-GKVSIDFSSLKNLSWLNLEQNN-LGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF  236 (659)
Q Consensus       161 ~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  236 (659)
                      +|  .++ +.++..+..+++|+.|++++|. ++.      ..+..+..+++|+.|++++|.                   
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~------~~~~~l~~l~~L~~L~l~~~~-------------------  258 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN------DCFQEFFQLNYLQHLSLSRCY-------------------  258 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG------GGGGGGGGCTTCCEEECTTCT-------------------
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH------HHHHHHhCCCCCCEeeCCCCC-------------------
Confidence            55  333 2333344455555555555554 332      223334444555555555442                   


Q ss_pred             EcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCC-CCCcEEEccCCCCCCCCCccccC
Q 038552          237 RIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGEL-KNLQQLSLYNNSLQGSIPSSLGN  301 (659)
Q Consensus       237 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~  301 (659)
                           .+.......+..+++|+.|++++| ++..   .+..+ .+++.|++++|.+++..|..++.
T Consensus       259 -----~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          259 -----DIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             -----TCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             -----CCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence                 111111124566777777777777 3322   22222 23555667788888777766554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.3e-21  Score=186.90  Aligned_cols=196  Identities=16%  Similarity=0.206  Sum_probs=108.8

Q ss_pred             CcCeeecccccCCCCCCccccCCCCCcEEEccCCC-CCCCCCccccCCCCCcEEEccC-CccccccCccCcCCCCCCEEe
Q 038552          256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNS-LQGSIPSSLGNLTKLVELPLSY-NNLQGNIPSSLGNCQILRMFN  333 (659)
Q Consensus       256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~  333 (659)
                      +|+.|++++|.+++..+..|..+++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55566666666555544455556666666666664 5444444555556666666655 555544444555555555555


Q ss_pred             CCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCc---eeecCCC-cccccCCccccCCCCCC-eEECC
Q 038552          334 ASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLV---KLDISGN-QFSGVIPVTLSACVSLE-YLNIS  408 (659)
Q Consensus       334 l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~L~-~L~l~  408 (659)
                      +++|.+++ +|                         . +..+++|+   +|++++| .+++..+..|.++++|+ +|+++
T Consensus       112 l~~n~l~~-lp-------------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          112 IFNTGLKM-FP-------------------------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEECCCS-CC-------------------------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred             CCCCCCcc-cc-------------------------c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence            55555542 33                         2 44444444   6666666 66555555566666666 66666


Q ss_pred             CCCCCCCCcccccCCCCCCEEECCCCc-ccccchhhhcCC-CCCCeeeCcCCcCcccCCCCCccCCcccccccCC
Q 038552          409 RNFFHGIIPLSLSSLKSIKEFNVSSNN-LSGLIPEFLKNL-SFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN  481 (659)
Q Consensus       409 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n  481 (659)
                      +|.+....+..+.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+..++.+.+.++
T Consensus       165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred             CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence            66666333333333 566666666663 655545556666 666666666666653 3322 4555555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=5.7e-21  Score=189.34  Aligned_cols=194  Identities=28%  Similarity=0.389  Sum_probs=118.9

Q ss_pred             ccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCE
Q 038552          252 RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRM  331 (659)
Q Consensus       252 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  331 (659)
                      ..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ + ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCE
Confidence            345555566666555543 22 35555666666666666553322  5556666666666666553 2 24555666666


Q ss_pred             EeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCC
Q 038552          332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNF  411 (659)
Q Consensus       332 L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  411 (659)
                      |++++|.+++ ++ .+..++.++ .|++++|.+.+..+  +..+++|++|+|++|.+++..+  +..+++|++|++++|.
T Consensus       112 L~l~~n~l~~-~~-~l~~l~~L~-~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          112 LDLTSTQITD-VT-PLAGLSNLQ-VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EECTTSCCCC-CG-GGTTCTTCC-EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCC-ch-hhcCCCCCC-EEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            6666666653 22 255555665 56666666654332  6667777777777777765433  6777777777777777


Q ss_pred             CCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcc
Q 038552          412 FHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       412 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~  462 (659)
                      +.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            765443  6677777777777777776542  6677777777777777754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.1e-20  Score=181.58  Aligned_cols=178  Identities=21%  Similarity=0.259  Sum_probs=119.2

Q ss_pred             CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552            8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG   87 (659)
Q Consensus         8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   87 (659)
                      ..++++++++.++ .+|..+.  ++++.|++++|.+.+..+.+|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4566777777776 5565554  467777777777776666667777777777777777766666667777777777777


Q ss_pred             cCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccc
Q 038552           88 ENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK  167 (659)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  167 (659)
                      +|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|++++..+..+..+++|++|++++|.+++.
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            77777555566677777777777777776 45544444566677777776666655555566666666666666666655


Q ss_pred             cccccCCCCCCCEEECCCCCCC
Q 038552          168 VSIDFSSLKNLSWLNLEQNNLG  189 (659)
Q Consensus       168 ~~~~l~~l~~L~~L~l~~n~l~  189 (659)
                      .+..|..+++|+.|++++|.+.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBC
T ss_pred             CHHHHhCCCCCCEEEeeCCcee
Confidence            5555666666666666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5e-21  Score=182.70  Aligned_cols=196  Identities=15%  Similarity=0.179  Sum_probs=99.3

Q ss_pred             CCcEEeccccCCCccccccccCCCCCcEEEccCCc-cCcccccccCCCCCCCEEEeec-CcCCccCcccccCCCCCCEEe
Q 038552           32 NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS-LGGKIPTTLGLLRNLVDLNVGE-NRFSGMFPRSICNISSLEWIY  109 (659)
Q Consensus        32 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~  109 (659)
                      +|++|++++|.+++..+.+|.++++|++|++++|. +....+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55555555555554444455555555555555554 4433334555555555555555 555544444555555555555


Q ss_pred             ccCccccccChHHHhcCCCCCc---EEEccCC-cCCcccChhccCCCCCC-EEEccCCCCccccccccCCCCCCCEEECC
Q 038552          110 LPFNRFSGSLPLDIAVNLPNLK---ALAIGGN-NFFGSIPNSLSNASNLE-ILDLTSNQLKGKVSIDFSSLKNLSWLNLE  184 (659)
Q Consensus       110 l~~n~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  184 (659)
                      +++|.++ .+|. + ..+++|+   .|++++| .+++..+..+.++++|+ +|++++|.++...+..|.. ++|+.|+++
T Consensus       112 l~~n~l~-~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLK-MFPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCC-SCCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCc-cccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            5555555 3443 2 2445555   5555555 55544444455555555 5555555555333333333 555555555


Q ss_pred             CCC-CCCCCCCCccccccccCC-CCCcEEEccCCccccccChhHHhccccCCEEEcccC
Q 038552          185 QNN-LGMGTANDLDFVTFLTNC-SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN  241 (659)
Q Consensus       185 ~n~-l~~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  241 (659)
                      +|. ++...      ...+..+ ++|+.|++++|.+++ +|..  .+ .+++.|++.++
T Consensus       188 ~n~~l~~i~------~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~-~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVID------KDAFGGVYSGPSLLDVSQTSVTA-LPSK--GL-EHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEEC------TTTTTTCSBCCSEEECTTCCCCC-CCCT--TC-TTCSEEECTTC
T ss_pred             CCCCcccCC------HHHhhccccCCcEEECCCCcccc-CChh--Hh-ccCceeeccCc
Confidence            552 44311      1233444 555566665555552 3322  11 24555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=6.4e-20  Score=181.78  Aligned_cols=191  Identities=21%  Similarity=0.382  Sum_probs=158.3

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      +++.|++++|.++. ++ .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+. + .+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence            67777777777764 34 57888899999999998886544  88899999999999998853 3 58889999999999


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV  391 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  391 (659)
                      +|.+++ ++ .+..+++|+.|++++|.+++..+  +..++.++ .|++++|.+.+..+  +..+++|++|++++|.+++.
T Consensus       116 ~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~-~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          116 STQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQ-YLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCC-EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCcc-EEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence            999885 33 38889999999999999885433  77888888 89999999986443  88999999999999999865


Q ss_pred             CCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552          392 IPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL  439 (659)
Q Consensus       392 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (659)
                      .+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|++++.
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            44  8899999999999999997653  88999999999999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=2.5e-19  Score=166.86  Aligned_cols=156  Identities=21%  Similarity=0.195  Sum_probs=93.0

Q ss_pred             CCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceec
Q 038552          279 KNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLD  358 (659)
Q Consensus       279 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~  358 (659)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++                  
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------   89 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ------------------   89 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC------------------
Confidence            35555666666555444444555555666666555555443444455555555555555444                  


Q ss_pred             cccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccc
Q 038552          359 LSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSG  438 (659)
Q Consensus       359 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  438 (659)
                             +..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus        90 -------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           90 -------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             -------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             -------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence                   2333334556666666666666665555556666677777777776665555556667777777777776553


Q ss_pred             cchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          439 LIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       439 ~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                             .++.|+.|+++.|.++|.+|.
T Consensus       163 -------~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          163 -------TCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             -------CTTTTHHHHHHHHHCTTTBBC
T ss_pred             -------CCCCHHHHHHHHHhCCceeec
Confidence                   345667777777777776664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.6e-19  Score=165.79  Aligned_cols=181  Identities=24%  Similarity=0.240  Sum_probs=123.3

Q ss_pred             CEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCC
Q 038552          234 TDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYN  313 (659)
Q Consensus       234 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  313 (659)
                      +.++.+++.++ .+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34445555444 234332  357888888888888766677788888888888888888766667788888999999888


Q ss_pred             ccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCC
Q 038552          314 NLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIP  393 (659)
Q Consensus       314 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  393 (659)
                      .+++..+..+..+++|++|++++|.+++..+                         ..+..+++|++|+|++|++++..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPD-------------------------GVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------------------TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCH-------------------------hHhccCCcCCEEECCCCccceeCH
Confidence            8886666667888888888887777663222                         234455666666666666665555


Q ss_pred             ccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCC
Q 038552          394 VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF  449 (659)
Q Consensus       394 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  449 (659)
                      ..+..+++|++|++++|.+.+       .+++|+.|+++.|.++|.+|..++.++.
T Consensus       142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            556666666667766665543       3456667777777777777766665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=5.4e-19  Score=178.76  Aligned_cols=104  Identities=14%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCC-ccccCCCCCcE-EEccCCCCCCCCCccccCCCCCcEEE
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIP-DTIGELKNLQQ-LSLYNNSLQGSIPSSLGNLTKLVELP  309 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~  309 (659)
                      ++++|++++|.++...+..|.++++|++|+|++|.+.+.++ ..|.+++++.+ +.+.+|++....|..|..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            45555555555553333345555555555555555544333 34455555443 33444555544455555555555555


Q ss_pred             ccCCccccccCccCcCCCCCCEEeCC
Q 038552          310 LSYNNLQGNIPSSLGNCQILRMFNAS  335 (659)
Q Consensus       310 l~~n~l~~~~~~~~~~~~~L~~L~l~  335 (659)
                      +++|.+....+..+.....+..+++.
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~  136 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQ  136 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred             ccccccccCCchhhcccchhhhhhhc
Confidence            55555554333334444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=4.2e-19  Score=179.54  Aligned_cols=244  Identities=17%  Similarity=0.138  Sum_probs=186.4

Q ss_pred             CEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcE-EEcc
Q 038552          234 TDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVE-LPLS  311 (659)
Q Consensus       234 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~  311 (659)
                      +.++.+++.++ .+|..+  .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| ..|.+++++.+ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            34566666666 566655  3689999999999997666789999999999999999876555 56889998876 5667


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccc-ccccCCCccccccCC-CCceeecCCCccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN-NLLNGSLPLQVGNLK-NLVKLDISGNQFS  389 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~  389 (659)
                      .|++....|..|..+++|++|++++|.+....+..+.....+. .+++.+ +.+....+..+..+. .++.|+|++|+++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE-EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhh-hhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            7899987788999999999999999999866666666666666 788865 556655555666664 6899999999998


Q ss_pred             ccCCccccCCCCCCeEECCC-CCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCC
Q 038552          390 GVIPVTLSACVSLEYLNISR-NFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKG  468 (659)
Q Consensus       390 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~  468 (659)
                      .+.+..| ..++|++|++++ |.+....+..|.++++|+.|++++|+++...+..+   .+|+.|.+.++.-...+|...
T Consensus       168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~  243 (350)
T 4ay9_X          168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLE  243 (350)
T ss_dssp             EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTT
T ss_pred             CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCch
Confidence            6544444 557899999986 56665555678999999999999999986654444   456666666665556778777


Q ss_pred             ccCCcccccccCCCCCcc
Q 038552          469 VFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       469 ~~~~~~~~~~~~n~~lc~  486 (659)
                      .+.+++.+.+. +++.|.
T Consensus       244 ~l~~L~~l~l~-~~~~c~  260 (350)
T 4ay9_X          244 KLVALMEASLT-YPSHCC  260 (350)
T ss_dssp             TCCSCCEEECS-CHHHHH
T ss_pred             hCcChhhCcCC-CCcccc
Confidence            78888888875 555553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=8.7e-19  Score=186.11  Aligned_cols=187  Identities=27%  Similarity=0.371  Sum_probs=121.0

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            67777777777765 55544  266777777777776 444   346777777777777775 555 444  77777777


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV  391 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  391 (659)
                      +|.+++ +|.   .+++|+.|++++|.+++ +|.   .++.+. .|++++|.+++ +|. +.  ++|++|+|++|.++ .
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~-~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLE-VLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCC-EEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcC-EEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            777775 554   56777777777777764 454   345555 67777777765 444 44  67777777777776 4


Q ss_pred             CCccccCCCCC-------CeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCC
Q 038552          392 IPVTLSACVSL-------EYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNL  447 (659)
Q Consensus       392 ~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  447 (659)
                      +|. +..  +|       ++|+|++|.++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            444 443  55       77777777776 455556667777777777777777666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=8.1e-19  Score=186.34  Aligned_cols=181  Identities=27%  Similarity=0.347  Sum_probs=112.1

Q ss_pred             CcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCC
Q 038552          256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS  335 (659)
Q Consensus       256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  335 (659)
                      +++.|++++|.+++ +|..+  +++|++|++++|.+. .+|   ..+++|++|++++|.+++ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            66777777776665 44433  256777777777766 444   345677777777777664 555 443  67777777


Q ss_pred             CcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCC
Q 038552          336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI  415 (659)
Q Consensus       336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  415 (659)
                      +|.+++ +|.   .++.+. .|++++|.+++ +|.   .+++|++|+|++|++++ +|. |.  ++|++|+|++|.++ .
T Consensus       129 ~N~l~~-lp~---~l~~L~-~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLE-YINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC---CCTTCC-EEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC---cCcccc-EEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            777664 444   455565 67777777664 443   45667777777777765 444 44  66777777777766 4


Q ss_pred             CcccccCCCCC-------CEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          416 IPLSLSSLKSI-------KEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       416 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      +|. +..  +|       +.|++++|.++. +|..+..+++|+.|++++|++++.+|
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            444 433  55       777777777763 45555557777777777777766544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=2.2e-19  Score=168.34  Aligned_cols=157  Identities=20%  Similarity=0.197  Sum_probs=108.3

Q ss_pred             cEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccC-ccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccc
Q 038552          282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIP-SSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS  360 (659)
Q Consensus       282 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~  360 (659)
                      +.+++++|.+. .+|..+  .+.+++|++++|.+++..+ ..|..+++|+.|++++|.++                    
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~--------------------   70 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--------------------   70 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence            46777777766 344433  2345667777776665433 33556666666666665555                    


Q ss_pred             cccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc
Q 038552          361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI  440 (659)
Q Consensus       361 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (659)
                           +..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+.+..|..|..+++|+.|++++|.+++..
T Consensus        71 -----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A           71 -----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             -----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred             -----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence                 334445666777777777777777766667777777788888888777777777777788888888888887777


Q ss_pred             hhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          441 PEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       441 ~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      |..+..+++|+.|++++|++.+.++.
T Consensus       146 ~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          146 PGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             HHHhcCCCCCCEEEecCcCCcCCCch
Confidence            77777788888888888888776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=3e-19  Score=167.43  Aligned_cols=156  Identities=19%  Similarity=0.274  Sum_probs=109.5

Q ss_pred             cEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccc
Q 038552          282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN  361 (659)
Q Consensus       282 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~  361 (659)
                      +.++.+++.+. .+|..+.  +.|++|++++|.+.+..+..|..+++|+.|++++|.+++                    
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--------------------   70 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--------------------   70 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence            46777777776 4454332  567777777777776555566777777766666666653                    


Q ss_pred             ccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccch
Q 038552          362 NLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIP  441 (659)
Q Consensus       362 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  441 (659)
                           ..|..|.++++|++|+|++|.++...+..|..+++|++|+|++|.+.+..|..|..+++|+.|++++|.+++..+
T Consensus        71 -----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           71 -----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             -----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             -----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence                 344556666777777777777776555566777777777777777777777777777777888888877777766


Q ss_pred             hhhcCCCCCCeeeCcCCcCcccCC
Q 038552          442 EFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       442 ~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      ..+..+++|+.|++++|++.+.+.
T Consensus       146 ~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          146 GTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCEECSGG
T ss_pred             HHHhCCCCCCEEEeCCCCcCCCCc
Confidence            677777778888888887776554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=1.3e-18  Score=176.55  Aligned_cols=180  Identities=23%  Similarity=0.174  Sum_probs=115.6

Q ss_pred             CeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCcccc-CCCCCcEEEccCCccccccCccCcCCCCCCEEeCCC
Q 038552          258 IALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG-NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR  336 (659)
Q Consensus       258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  336 (659)
                      +.++++++.+.. +|..+  .+.++.|+|++|.+.+..+..+. .+++|++|+|++|.+++..+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            345555555542 33322  13355555555555544444444 555555555555555544444455555555555555


Q ss_pred             cccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCC
Q 038552          337 NKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII  416 (659)
Q Consensus       337 n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  416 (659)
                      |                         .+.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+.+..
T Consensus        98 N-------------------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           98 N-------------------------HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             S-------------------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             C-------------------------cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            4                         444444456677788888888888888777778888888888888888888655


Q ss_pred             cccc---cCCCCCCEEECCCCcccccchhhhcCCCC--CCeeeCcCCcCcccCC
Q 038552          417 PLSL---SSLKSIKEFNVSSNNLSGLIPEFLKNLSF--MEFLDLSYNHFEGEVP  465 (659)
Q Consensus       417 ~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~l~l~~n~l~~~~p  465 (659)
                      +..|   ..+++|+.|+|++|.+++..+..+..++.  ++.|++++|++.+.+.
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            5555   56888888888888888776677777776  4788888888887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.6e-18  Score=167.53  Aligned_cols=172  Identities=24%  Similarity=0.329  Sum_probs=98.4

Q ss_pred             cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552          251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR  330 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  330 (659)
                      +..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            34566667777776666543 2 35666667777777666664333  6666666666666666653 22 356666666


Q ss_pred             EEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCC
Q 038552          331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN  410 (659)
Q Consensus       331 ~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  410 (659)
                      .|++++|.+.+.                           ..+..+++|++|++++|++++.  ..+..+++|++|++++|
T Consensus       116 ~L~L~~n~i~~~---------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          116 SLSLEHNGISDI---------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             EEECTTSCCCCC---------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             EEECCCCcCCCC---------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence            666666665531                           2344455555555555555543  34555555666666666


Q ss_pred             CCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552          411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       411 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      .+.+..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus       167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          167 QISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             ccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            5554433  55556666666666655543 2 2555556666666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.2e-18  Score=167.90  Aligned_cols=169  Identities=27%  Similarity=0.383  Sum_probs=137.1

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      .++.|++++|.+... + .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+ ++ .+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence            799999999999854 3 58899999999999999987654  8999999999999999985 33 48999999999999


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV  391 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  391 (659)
                      +|.+.+.  ..+..+++|+.|++++|.+++.                           ..+..+++|++|+|++|++++.
T Consensus       121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---------------------------~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          121 HNGISDI--NGLVHLPQLESLYLGNNKITDI---------------------------TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC---------------------------GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCcCCCC--hhhcCCCCCCEEEccCCcCCcc---------------------------hhhccCCCCCEEEccCCccccc
Confidence            9999853  4688889999998888877631                           2355667788888888877765


Q ss_pred             CCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552          392 IPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL  439 (659)
Q Consensus       392 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (659)
                      .+  +..+++|++|++++|.+++. + .+..+++|+.|++++|+++..
T Consensus       172 ~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          172 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence            44  77788888888888888753 3 477888888888888887653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=9.6e-18  Score=158.30  Aligned_cols=156  Identities=19%  Similarity=0.185  Sum_probs=113.0

Q ss_pred             CcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccc
Q 038552          281 LQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS  360 (659)
Q Consensus       281 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~  360 (659)
                      -+.++.+++.+. .+|..+  .++|++|++++|.+++..|..|..+++|+.|++++|.+.                    
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~--------------------   77 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG--------------------   77 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC--------------------
Confidence            456777777766 455433  267777777777777666666777777777666666654                    


Q ss_pred             cccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc
Q 038552          361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI  440 (659)
Q Consensus       361 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (659)
                           ...+..+..+++|++|+|++|++++..+..|..+++|++|+|++|.+. .+|..+..+++|+.|++++|.+++..
T Consensus        78 -----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A           78 -----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             -----CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence                 233344566777888888888887666666778888888888888887 56677788888888888888888776


Q ss_pred             hhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          441 PEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       441 ~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      +..+..+++|+.|++++|++.+.++
T Consensus       152 ~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          152 HGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             HHHHhCCCCCCEEEeeCCCccCCcc
Confidence            6777788888888888888887665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=155.79  Aligned_cols=156  Identities=18%  Similarity=0.203  Sum_probs=128.5

Q ss_pred             CeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCC-ccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCC
Q 038552          258 IALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP-SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASR  336 (659)
Q Consensus       258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  336 (659)
                      +.+++++|.++. +|..+  ...+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            589999999984 56544  3567899999999997754 4589999999999999999987777899999888888887


Q ss_pred             cccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCC
Q 038552          337 NKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII  416 (659)
Q Consensus       337 n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  416 (659)
                      |.+++                         ..+..+..+++|++|+|++|++++..|..|..+++|++|+|++|.+++..
T Consensus        91 N~l~~-------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A           91 NRLEN-------------------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             SCCCC-------------------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred             CccCc-------------------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence            77763                         33445667788888888888888887888888888999999999888888


Q ss_pred             cccccCCCCCCEEECCCCcccccch
Q 038552          417 PLSLSSLKSIKEFNVSSNNLSGLIP  441 (659)
Q Consensus       417 ~~~~~~l~~L~~L~l~~n~l~~~~~  441 (659)
                      |..|..+++|+.|++++|++.+..+
T Consensus       146 ~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          146 PGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             HHHhcCCCCCCEEEecCcCCcCCCc
Confidence            8888889999999999998876543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.8e-18  Score=184.49  Aligned_cols=188  Identities=23%  Similarity=0.335  Sum_probs=136.5

Q ss_pred             EEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCc
Q 038552          235 DFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNN  314 (659)
Q Consensus       235 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  314 (659)
                      .+.+..+.+....  .+..++.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.
T Consensus        25 ~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           25 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             HHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence            3445555555332  256788888999988888743 3 57888999999999998886544  7888899999999988


Q ss_pred             cccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCc
Q 038552          315 LQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPV  394 (659)
Q Consensus       315 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  394 (659)
                      +.+ +| .+..+++|+.|++++|.+.+ + ..+..++.|+ .|+|++|.+.+.  ..+..+++|+.|+|++|.+.+..| 
T Consensus        99 l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~-~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           99 IKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE-SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             CCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCS-EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccC-EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence            874 33 68888888888888888874 2 3466677776 777777777654  466777777777777777776554 


Q ss_pred             cccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552          395 TLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL  439 (659)
Q Consensus       395 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (659)
                       +..+++|++|+|++|.+.+. + .+..+++|+.|+|++|++++.
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             -hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence             67777777777777777653 2 567777777777777777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.7e-17  Score=155.47  Aligned_cols=154  Identities=19%  Similarity=0.227  Sum_probs=127.4

Q ss_pred             CeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCc
Q 038552          258 IALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRN  337 (659)
Q Consensus       258 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  337 (659)
                      +.++++++.++ .+|..+.  ++++.|++++|.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            57888888887 4555443  78999999999999888888999999999999999999888999999999999998888


Q ss_pred             ccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCc
Q 038552          338 KLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP  417 (659)
Q Consensus       338 ~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  417 (659)
                      .++. +                        .+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.+.+..+
T Consensus        91 ~l~~-l------------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           91 KITE-L------------------------PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             CCCC-C------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCc-c------------------------CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            8762 2                        22335667788888888888887777888888888888888888887777


Q ss_pred             ccccCCCCCCEEECCCCccccc
Q 038552          418 LSLSSLKSIKEFNVSSNNLSGL  439 (659)
Q Consensus       418 ~~~~~l~~L~~L~l~~n~l~~~  439 (659)
                      ..|..+++|+.|++++|++...
T Consensus       146 ~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          146 GTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCEECS
T ss_pred             HHHhCCCCCCEEEeCCCCcCCC
Confidence            7788888888888888888643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.3e-17  Score=179.24  Aligned_cols=167  Identities=28%  Similarity=0.384  Sum_probs=77.0

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      .|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|+
T Consensus        44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence            44444555444442 12 34444555555555554443322  4445555555555554442 22 34444555555555


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV  391 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  391 (659)
                      +|.+.+ + ..+..+++|+.|++++|.+.+.  ..+..++.|+ .|+|++|.+.+..|  +..+++|+.|+|++|++++.
T Consensus       118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~-~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          118 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD-TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             TSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS-EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC-EEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            554442 1 2344445555555555544432  3344444444 45555555544333  44445555555555554432


Q ss_pred             CCccccCCCCCCeEECCCCCCC
Q 038552          392 IPVTLSACVSLEYLNISRNFFH  413 (659)
Q Consensus       392 ~~~~~~~~~~L~~L~l~~n~l~  413 (659)
                        ..+..+++|+.|+|++|.+.
T Consensus       191 --~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          191 --RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             --GGGTTCTTCSEEECCSEEEE
T ss_pred             --hHHccCCCCCEEEccCCcCc
Confidence              23444455555555555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=3.7e-17  Score=154.30  Aligned_cols=153  Identities=22%  Similarity=0.276  Sum_probs=91.7

Q ss_pred             CcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccC
Q 038552           33 LQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPF  112 (659)
Q Consensus        33 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  112 (659)
                      -+.++.+++.+. .+|..+.  ++|++|++++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            345555555554 3443332  5566666666666555555566666666666666666544444456666666666666


Q ss_pred             ccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCC
Q 038552          113 NRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM  190 (659)
Q Consensus       113 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  190 (659)
                      |.++ .++...+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus        98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            6665 444444335666666666666666 455666666777777777776665555566667777777777776653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.2e-17  Score=169.43  Aligned_cols=178  Identities=20%  Similarity=0.165  Sum_probs=138.8

Q ss_pred             CCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCcccc-CCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          233 MTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIG-ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       233 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      -+.++++++.++ .+|..+.  ..++.|+|++|.+++..+..+. .+++|++|+|++|.+.+..+..|..+++|++|+|+
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            467889999888 4676543  4689999999999988888887 89999999999999998888889999999999999


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV  391 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  391 (659)
                      +|.+.+..+..|..+++|+.|++++|.+.+..                         +..|..+++|++|+|++|++++.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-------------------------~~~~~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD-------------------------RNAFEDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-------------------------TTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEEC-------------------------HHHhCCcccCCEEECCCCcCCee
Confidence            99999777778899999999888888877433                         34455666777777777777654


Q ss_pred             CCccc---cCCCCCCeEECCCCCCCCCCcccccCCCC--CCEEECCCCcccc
Q 038552          392 IPVTL---SACVSLEYLNISRNFFHGIIPLSLSSLKS--IKEFNVSSNNLSG  438 (659)
Q Consensus       392 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~  438 (659)
                      .+..|   ..+++|++|+|++|.+.+..+..+..++.  ++.|++++|++..
T Consensus       152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            44444   45777888888888877666666666666  3778888887754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=7e-18  Score=154.45  Aligned_cols=133  Identities=26%  Similarity=0.349  Sum_probs=91.7

Q ss_pred             eeccccccccCCCcc-ccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCC
Q 038552          356 SLDLSNNLLNGSLPL-QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN  434 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  434 (659)
                      .|++++|.+.+..+. .+..+++|++|+|++|++++..|..|.++++|++|+|++|++.+..+..|.++++|+.|++++|
T Consensus        33 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             EEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            455555555544443 3677777888888888887777777777888888888888887777777777888888888888


Q ss_pred             cccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCcccC
Q 038552          435 NLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGGI  488 (659)
Q Consensus       435 ~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  488 (659)
                      .+++..|..+..+++|+.|++++|++.+.++.......+....+.++...|+.+
T Consensus       113 ~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            888777777777888888888888887776643222222333444555566544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=2.3e-17  Score=151.91  Aligned_cols=154  Identities=15%  Similarity=0.166  Sum_probs=122.4

Q ss_pred             cCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCE
Q 038552           28 GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEW  107 (659)
Q Consensus        28 ~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  107 (659)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            55678888999888888 555 6888889999999888663  3457888899999999999888777888888999999


Q ss_pred             EeccCccccccChHHHhcCCCCCcEEEccCCc-CCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCC
Q 038552          108 IYLPFNRFSGSLPLDIAVNLPNLKALAIGGNN-FFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN  186 (659)
Q Consensus       108 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (659)
                      |++++|.+++..|..+. .+++|+.|++++|. ++ .++ .+..+++|+.|++++|.+++..  .+..+++|+.|++++|
T Consensus       117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred             EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence            99999988866676665 78899999999987 54 445 5888999999999999887643  6788899999999998


Q ss_pred             CCCC
Q 038552          187 NLGM  190 (659)
Q Consensus       187 ~l~~  190 (659)
                      ++..
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            8753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=3.8e-17  Score=150.46  Aligned_cols=154  Identities=15%  Similarity=0.231  Sum_probs=110.0

Q ss_pred             ccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCC
Q 038552           51 VGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNL  130 (659)
Q Consensus        51 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  130 (659)
                      ...+++|++|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+. .+++|
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L  114 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSL  114 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhc-CCCCC
Confidence            356777888888888775 445 5777888888888888654  234677788888888888877755555554 67888


Q ss_pred             cEEEccCCcCCcccChhccCCCCCCEEEccCCC-CccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCc
Q 038552          131 KALAIGGNNFFGSIPNSLSNASNLEILDLTSNQ-LKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLK  209 (659)
Q Consensus       131 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~  209 (659)
                      ++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.++..        ..+..+++|+
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~--------~~l~~l~~L~  184 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY--------RGIEDFPKLN  184 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC--------TTGGGCSSCC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh--------HHhccCCCCC
Confidence            888888888877667777888888888888887 54 344 577788888888888877542        1566677888


Q ss_pred             EEEccCCccc
Q 038552          210 VISLYANQFG  219 (659)
Q Consensus       210 ~L~l~~n~~~  219 (659)
                      .|++++|++.
T Consensus       185 ~L~l~~N~i~  194 (197)
T 4ezg_A          185 QLYAFSQTIG  194 (197)
T ss_dssp             EEEECBC---
T ss_pred             EEEeeCcccC
Confidence            8888888765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.6e-17  Score=158.67  Aligned_cols=169  Identities=25%  Similarity=0.302  Sum_probs=83.9

Q ss_pred             CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeC
Q 038552          255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNA  334 (659)
Q Consensus       255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  334 (659)
                      .++..++++++.+++..  .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++..+  +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            33444555555554322  3445555666666666555 233 35555666666666665553322  555566666666


Q ss_pred             CCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCC
Q 038552          335 SRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG  414 (659)
Q Consensus       335 ~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  414 (659)
                      ++|++++ +|... . +.++ .|++++|.+.+.  ..+..+++|++|+|++|++++. + .+..+++|++|++++|.+.+
T Consensus        93 ~~N~l~~-l~~~~-~-~~L~-~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           93 NRNRLKN-LNGIP-S-ACLS-RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CSSCCSC-CTTCC-C-SSCC-EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCccCC-cCccc-c-Cccc-EEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence            6555542 21111 1 2232 344444444321  1344555555555555555543 2 35555555555555555554


Q ss_pred             CCcccccCCCCCCEEECCCCccccc
Q 038552          415 IIPLSLSSLKSIKEFNVSSNNLSGL  439 (659)
Q Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~  439 (659)
                      .  ..+..+++|+.|++++|.+++.
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            4  3455555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=5.8e-19  Score=188.69  Aligned_cols=191  Identities=20%  Similarity=0.193  Sum_probs=108.5

Q ss_pred             ccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCC-------------CCCCCCccccCCCCCcEEE-ccCCcccc
Q 038552          252 RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNS-------------LQGSIPSSLGNLTKLVELP-LSYNNLQG  317 (659)
Q Consensus       252 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~  317 (659)
                      ..++.|+.|++++|.+. .+|+.++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            34556666666666664 456666666666666665443             2233344444444444444 3332211 


Q ss_pred             ccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCcccc
Q 038552          318 NIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLS  397 (659)
Q Consensus       318 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  397 (659)
                                .|+.+.+++|.+.. ++     ...+. .|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++
T Consensus       424 ----------~L~~l~l~~n~i~~-l~-----~~~L~-~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLK-ME-----YADVR-VLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             ----------HHHHHHHHHHHHHH-HH-----HTTCS-EEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred             ----------hhhhhhhhcccccc-cC-----ccCce-EEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence                      01111122222221 00     11233 56667776664 444 666777777777777776 5566677


Q ss_pred             CCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc-hhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          398 ACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI-PEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       398 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      .+++|++|+|++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|++++..|.
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            77777777777777765 45 6677777777777777777665 66777777777777777777665553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.2e-17  Score=158.10  Aligned_cols=171  Identities=21%  Similarity=0.262  Sum_probs=146.2

Q ss_pred             CCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccce
Q 038552          277 ELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS  356 (659)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~  356 (659)
                      .+.++..++++++.+.+. + .+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+++..+  +..++.++ .
T Consensus        17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~-~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLE-E   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCC-E
T ss_pred             HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCC-E
Confidence            456677888999998844 3 5788999999999999998 455 68899999999999999986544  88899998 9


Q ss_pred             eccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552          357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL  436 (659)
Q Consensus       357 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  436 (659)
                      |++++|.+.+. |. +.. ++|++|+|++|++++.  ..+..+++|++|++++|++++. + .+..+++|+.|++++|.+
T Consensus        90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence            99999999864 32 333 9999999999999864  3689999999999999999865 3 688999999999999999


Q ss_pred             cccchhhhcCCCCCCeeeCcCCcCccc
Q 038552          437 SGLIPEFLKNLSFMEFLDLSYNHFEGE  463 (659)
Q Consensus       437 ~~~~~~~l~~l~~L~~l~l~~n~l~~~  463 (659)
                      ++.  ..+..+++|+.|++++|++.+.
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cch--HHhccCCCCCEEeCCCCcccCC
Confidence            987  6788999999999999999865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=1.3e-18  Score=186.08  Aligned_cols=180  Identities=20%  Similarity=0.216  Sum_probs=97.3

Q ss_pred             CCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccC-------------CCccccccccCCCCCcEEE-ccCCccC
Q 038552            3 LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNY-------------LTGQLPDFVGNLSALKVFY-IIGNSLG   68 (659)
Q Consensus         3 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~-------------~~~~~~~~~~~l~~L~~L~-l~~n~l~   68 (659)
                      +..+++|+.|+|++|.++ .+|..+++|++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            355677777777777776 667777777777777776554             4445556666666666666 3433221


Q ss_pred             ccccc------ccCC--CCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcC
Q 038552           69 GKIPT------TLGL--LRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNF  140 (659)
Q Consensus        69 ~~~~~------~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  140 (659)
                      . ++.      .+..  ...|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+
T Consensus       424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNAL  498 (567)
T ss_dssp             H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCC
T ss_pred             h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCC
Confidence            0 000      0000  0135555555555553 343 555555555555555555 5555444 455555555555555


Q ss_pred             CcccChhccCCCCCCEEEccCCCCcccc-ccccCCCCCCCEEECCCCCCCC
Q 038552          141 FGSIPNSLSNASNLEILDLTSNQLKGKV-SIDFSSLKNLSWLNLEQNNLGM  190 (659)
Q Consensus       141 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~  190 (659)
                      ++ +| .++.+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++
T Consensus       499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            54 33 4555555555555555555444 4555555555555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=9.6e-17  Score=160.76  Aligned_cols=100  Identities=11%  Similarity=0.042  Sum_probs=47.8

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCc-EEEccCCCCCCCCCccccCCCCCcEEEc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQ-QLSLYNNSLQGSIPSSLGNLTKLVELPL  310 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l  310 (659)
                      +|+.+++.+|.++...+..|.++++|+.+++.+| +....+.+|.++.+|+ .+++.+ .+....+.+|.+|++|+.+++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            4455555544444333344455555555555444 3333334455555555 555544 343334444555555555555


Q ss_pred             cCCccccccCccCcCCCCCCEEe
Q 038552          311 SYNNLQGNIPSSLGNCQILRMFN  333 (659)
Q Consensus       311 ~~n~l~~~~~~~~~~~~~L~~L~  333 (659)
                      ++|.+....+.+|.++++|+.++
T Consensus       305 ~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          305 TGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCccCccchhhhcCCcchhhhc
Confidence            55554444444455555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=9e-17  Score=177.38  Aligned_cols=180  Identities=22%  Similarity=0.220  Sum_probs=120.0

Q ss_pred             ChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCC
Q 038552          223 PHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNL  302 (659)
Q Consensus       223 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  302 (659)
                      +..+..+. .|+.|++++|.+. .+|..+..+++|+.|+|++|.++ .+|..|+.+++|++|+|++|.+. .+|..++.+
T Consensus       217 ~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQ-LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -----CCC-CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhhhccCC-CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            33343333 6777777777766 56767778899999999999998 78888999999999999999999 779899999


Q ss_pred             CCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceee
Q 038552          303 TKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD  382 (659)
Q Consensus       303 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~  382 (659)
                      ++|++|+|++|.++ .+|..|..+++|+.|++++|.+++.+|..+.........+++++|.+.+.+|.      .|+.|+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~  365 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIE  365 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeE
Confidence            99999999999997 78888999999999999999999988888876654433588999999988875      456667


Q ss_pred             cCCC--------cccccCCccccCCCCCCeEECCCCCCC
Q 038552          383 ISGN--------QFSGVIPVTLSACVSLEYLNISRNFFH  413 (659)
Q Consensus       383 L~~n--------~l~~~~~~~~~~~~~L~~L~l~~n~l~  413 (659)
                      +++|        .+.+..+..+..+..+....+++|-+.
T Consensus       366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ------------------------------------CCC
T ss_pred             eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            7766        333333344455556666667777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=2.4e-16  Score=144.05  Aligned_cols=110  Identities=25%  Similarity=0.323  Sum_probs=93.6

Q ss_pred             eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN  435 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  435 (659)
                      +|++++|.+. .+|..+..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|+.|++++|.
T Consensus        35 ~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           35 ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             EEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence            5666666665 556778888899999999999988888889999999999999999998888889999999999999999


Q ss_pred             ccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       436 l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      +++..+..+..+++|+.|++++|++.+.+..
T Consensus       114 l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          114 ISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            9877777788899999999999999887653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=9.3e-16  Score=140.27  Aligned_cols=154  Identities=18%  Similarity=0.209  Sum_probs=98.6

Q ss_pred             CCCEEeCCCcccccccch-hhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEE
Q 038552          328 ILRMFNASRNKLTGALPH-QLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLN  406 (659)
Q Consensus       328 ~L~~L~l~~n~l~~~~~~-~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  406 (659)
                      +++.|++++|.+.+..+. .+..++.++ .|++++|.+.+..|..+..+++|++|+|++|++++..+..|.++++|++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLV-KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCC-EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCC-EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            344444444444332222 234444444 555555555556667788888888899999988888888888889999999


Q ss_pred             CCCCCCCCCCcccccCCCCCCEEECCCCcccccchh-hhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCc
Q 038552          407 ISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPE-FLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLC  485 (659)
Q Consensus       407 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc  485 (659)
                      |++|.+++..|..+..+++|+.|++++|++.+..+- .+..  .++...+..+...+..|..  +....-.++..+...|
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C  184 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCC
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCc
Confidence            999999888888888899999999999998876542 1111  1222234445555554532  3334444555565556


Q ss_pred             c
Q 038552          486 G  486 (659)
Q Consensus       486 ~  486 (659)
                      .
T Consensus       185 ~  185 (192)
T 1w8a_A          185 S  185 (192)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.8e-15  Score=135.43  Aligned_cols=133  Identities=22%  Similarity=0.214  Sum_probs=100.4

Q ss_pred             CCCCEEeCCCcccc-cccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeE
Q 038552          327 QILRMFNASRNKLT-GALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYL  405 (659)
Q Consensus       327 ~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  405 (659)
                      ++|+.|++++|.++ +.+|..+..++.++ .|++++|.+.+.  ..+..+++|++|+|++|.+++.+|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~-~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLE-FLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCC-EEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCC-EEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            44555555555554 44454455555555 566666666544  567788899999999999987778777789999999


Q ss_pred             ECCCCCCCCCC-cccccCCCCCCEEECCCCcccccch---hhhcCCCCCCeeeCcCCcCcc
Q 038552          406 NISRNFFHGII-PLSLSSLKSIKEFNVSSNNLSGLIP---EFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       406 ~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~l~l~~n~l~~  462 (659)
                      ++++|.+.+.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999998653 2688899999999999999987765   578899999999999998763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=1.2e-15  Score=152.88  Aligned_cols=265  Identities=14%  Similarity=0.150  Sum_probs=137.3

Q ss_pred             CCCCCEEECCCCCCCCCCCCCccccccccC-CCCCcEEEccCCccc--cccChhHHhccccCCEEEcccCcccccCCccc
Q 038552          175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTN-CSSLKVISLYANQFG--GELPHSIANLSSTMTDFRIGANQISGTIPPGI  251 (659)
Q Consensus       175 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  251 (659)
                      +.+++.|.++++ +..      .-...+.. +++|+.|||++|.+.  ...+..+   . .+..+.+..+.+.   +..|
T Consensus        24 ~~~l~~L~l~g~-i~~------~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~-~~~~~~~~~~~I~---~~aF   89 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNA------EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---P-NGKFYIYMANFVP---AYAF   89 (329)
T ss_dssp             HHHCSEEEEEEE-ECH------HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---G-GGCCEEECTTEEC---TTTT
T ss_pred             hCceeEEEEecc-ccH------HHHHHHHHhhccCeEEecCcceeEEecCccccc---c-ccccccccccccC---HHHh
Confidence            456888888754 211      11223333 788999999998876  1111111   1 1223333333222   2344


Q ss_pred             cc--------CCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCcc----cccc
Q 038552          252 RN--------LVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNL----QGNI  319 (659)
Q Consensus       252 ~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~  319 (659)
                      .+        +++|+.+++.+ .++...+.+|.+|++|+.+++.+|.+....+..|..+.++..+.+..+..    ....
T Consensus        90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~  168 (329)
T 3sb4_A           90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE  168 (329)
T ss_dssp             EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred             cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence            55        88899999887 77766677888889999999988888777777888877777777655321    1122


Q ss_pred             CccCcCCCCCC-EEeCCCcccccccchhhhh----cccccceeccccccccCCCcccc-ccCCCCceeecCCCcccccCC
Q 038552          320 PSSLGNCQILR-MFNASRNKLTGALPHQLLS----ITTLTLSLDLSNNLLNGSLPLQV-GNLKNLVKLDISGNQFSGVIP  393 (659)
Q Consensus       320 ~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~----~~~l~~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~  393 (659)
                      ...|.++..|+ .+.+....   .++..+..    ...+. .+.+.++-.. .....+ ..+++|++|+|++|+++.+.+
T Consensus       169 ~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~-~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~  243 (329)
T 3sb4_A          169 HFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDIN-FLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPD  243 (329)
T ss_dssp             TSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCS-EEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred             ccccccccccceeEEecCCC---cHHHHHhhcccCccccc-eEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecH
Confidence            33455556665 33333211   12221111    11111 1222211100 000011 124555555555555554444


Q ss_pred             ccccCCCCCCeEECCCCCCCCCCcccccCCCCCC-EEECCCCcccccchhhhcCCCCCCeeeCcCCcCc
Q 038552          394 VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIK-EFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       394 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      .+|.+|++|++|++.+| +..+.+.+|.+|++|+ .+++.+ .++...+..|..+++|+.+++++|.+.
T Consensus       244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            45555555555555554 4444444555555555 555555 444444455555555555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=2.1e-16  Score=174.41  Aligned_cols=146  Identities=20%  Similarity=0.233  Sum_probs=103.9

Q ss_pred             cCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccC
Q 038552           94 MFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFS  173 (659)
Q Consensus        94 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~  173 (659)
                      ..+..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            45666777778888888887777 7777776 6778888888888877 66777888888888888888877 5677788


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcc
Q 038552          174 SLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG  250 (659)
Q Consensus       174 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  250 (659)
                      .+++|++|+|++|.++       .++..+..+++|+.|+|++|.+.+.+|..+.........+++.+|.+++.+|..
T Consensus       291 ~l~~L~~L~L~~N~l~-------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             GGTTCSEEECCSSCCC-------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CCCCCCEEECCCCCCC-------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            8888888888888775       345557778888888888888888888877665433334567777777666643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2.9e-15  Score=134.05  Aligned_cols=132  Identities=18%  Similarity=0.197  Sum_probs=71.6

Q ss_pred             CCCcEEeccccCCC-ccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEe
Q 038552           31 LNLQTLAIDFNYLT-GQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIY  109 (659)
Q Consensus        31 ~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  109 (659)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666666666665 45555556666666666666665433  4556666666666666666554555555566666666


Q ss_pred             ccCccccccChH-HHhcCCCCCcEEEccCCcCCcccC---hhccCCCCCCEEEccCCCCc
Q 038552          110 LPFNRFSGSLPL-DIAVNLPNLKALAIGGNNFFGSIP---NSLSNASNLEILDLTSNQLK  165 (659)
Q Consensus       110 l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~  165 (659)
                      +++|.++ .+|. .....+++|+.|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6666555 3321 112245555555555555543332   24445555555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=4.4e-15  Score=134.08  Aligned_cols=111  Identities=21%  Similarity=0.280  Sum_probs=88.4

Q ss_pred             eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN  435 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  435 (659)
                      .|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus        32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ  111 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc
Confidence            56666666665555567778888888888888887766777888888888888888887777777888888889998888


Q ss_pred             ccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       436 l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      +++..+..+..+++|+.|++++|++.+.+|.
T Consensus       112 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A          112 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            8877666678888888999998888877663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.8e-15  Score=132.38  Aligned_cols=128  Identities=23%  Similarity=0.323  Sum_probs=92.2

Q ss_pred             CCCcEEEccCCccc-cccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCcee
Q 038552          303 TKLVELPLSYNNLQ-GNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKL  381 (659)
Q Consensus       303 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L  381 (659)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.++                         +.  ..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~--~~~~~l~~L~~L   69 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-------------------------SI--ANLPKLNKLKKL   69 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-------------------------CC--TTCCCCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-------------------------Cc--hhhhcCCCCCEE
Confidence            45666666666665 455555566666666666655554                         22  356667788888


Q ss_pred             ecCCCcccccCCccccCCCCCCeEECCCCCCCCC-CcccccCCCCCCEEECCCCcccccch---hhhcCCCCCCeeeCcC
Q 038552          382 DISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI-IPLSLSSLKSIKEFNVSSNNLSGLIP---EFLKNLSFMEFLDLSY  457 (659)
Q Consensus       382 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~l~l~~  457 (659)
                      ++++|.+++.+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++
T Consensus        70 ~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888888876777777788888888888888764 34678888888888888888887655   5678888888888763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=9.1e-14  Score=141.90  Aligned_cols=271  Identities=10%  Similarity=0.076  Sum_probs=184.0

Q ss_pred             CCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038552           29 SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWI  108 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  108 (659)
                      .+..++.+.+.+ .++..-..+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .++...+.+|.+|.+|+.+
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            446777777754 4554556677775 6888888765 555555667774 688888875 5665666788888888888


Q ss_pred             eccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCC
Q 038552          109 YLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNL  188 (659)
Q Consensus       109 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  188 (659)
                      +++.|.++ .++...+ ...+|+.+.+..+ ++.+-..+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+.. .+
T Consensus       186 ~l~~n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i  259 (401)
T 4fdw_A          186 DLSKTKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV  259 (401)
T ss_dssp             ECTTSCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred             ecCCCcce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence            88888887 7777777 4678888888744 66566677888888888888864 55566667777 6788888843 34


Q ss_pred             CCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCC
Q 038552          189 GMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH  268 (659)
Q Consensus       189 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  268 (659)
                      +..      -..++..|++|+.+++.++.+..                    +......+..|.+|++|+.+++. +.+.
T Consensus       260 ~~I------~~~aF~~c~~L~~l~l~~~~~~~--------------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~  312 (401)
T 4fdw_A          260 TNI------ASRAFYYCPELAEVTTYGSTFND--------------------DPEAMIHPYCLEGCPKLARFEIP-ESIR  312 (401)
T ss_dssp             CEE------CTTTTTTCTTCCEEEEESSCCCC--------------------CTTCEECTTTTTTCTTCCEECCC-TTCC
T ss_pred             cEE------ChhHhhCCCCCCEEEeCCccccC--------------------CcccEECHHHhhCCccCCeEEeC-CceE
Confidence            321      12456677778887777665430                    00111223456777888888887 3465


Q ss_pred             CCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCC-CCCEEeCCCccc
Q 038552          269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQ-ILRMFNASRNKL  339 (659)
Q Consensus       269 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l  339 (659)
                      .....+|.+|.+|+.+.|..+ +......+|.++ +|+.+.+++|.+....+..|.+++ .++.+.+..+.+
T Consensus       313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            555667778888888888554 554556677888 888888888777655556666664 567777766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=7.1e-14  Score=143.58  Aligned_cols=332  Identities=11%  Similarity=0.074  Sum_probs=160.9

Q ss_pred             cccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhc
Q 038552           46 QLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV  125 (659)
Q Consensus        46 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  125 (659)
                      ....+|.++.+|+.+.+..+ +......+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +. .+....+.
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~  137 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFK  137 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeee
Confidence            33445555555555555432 33333445555566666655433 33333445555555555555433 22 23333332


Q ss_pred             CCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCC
Q 038552          126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNC  205 (659)
Q Consensus       126 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~  205 (659)
                      .+..+ .+.... ........+|.++++|+.+.+.++ +.......|..+.+|+.+.+..+ ++..      -...+..|
T Consensus       138 ~~~~~-~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I------~~~~F~~~  207 (394)
T 4fs7_A          138 GCDFK-EITIPE-GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKII------RDYCFAEC  207 (394)
T ss_dssp             TCCCS-EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEE------CTTTTTTC
T ss_pred             ccccc-ccccCc-cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEe------Cchhhccc
Confidence            33222 222211 111122345666666666666543 23344455666666666666543 2211      11234455


Q ss_pred             CCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEE
Q 038552          206 SSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLS  285 (659)
Q Consensus       206 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  285 (659)
                      ..|+.+.+..+...  +....... ..++.+.+... ++......+..+..++.+.+..+.. ......|..+..++.+.
T Consensus       208 ~~L~~i~~~~~~~~--i~~~~~~~-~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          208 ILLENMEFPNSLYY--LGDFALSK-TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             TTCCBCCCCTTCCE--ECTTTTTT-CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEE
T ss_pred             cccceeecCCCceE--eehhhccc-CCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceec
Confidence            55555544433211  01111111 13444433322 1111223344555555555544322 13334455555555555


Q ss_pred             ccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccccccc
Q 038552          286 LYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN  365 (659)
Q Consensus       286 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~  365 (659)
                      +..+.+.   ...|..+.+|+.+.+.++ +......+|.+|.+|+.+++.+                         + +.
T Consensus       283 ~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-------------------------~-v~  332 (394)
T 4fs7_A          283 YGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-------------------------L-VE  332 (394)
T ss_dssp             ECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-------------------------T-CC
T ss_pred             cCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-------------------------c-cc
Confidence            5443321   234555556666655433 3323344555555555555432                         1 22


Q ss_pred             CCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEE
Q 038552          366 GSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEF  429 (659)
Q Consensus       366 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  429 (659)
                      .....+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ +. .+..+|.++++|+.+
T Consensus       333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            233456778888888888766 66566678888888888888765 22 334577888877764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=5.6e-14  Score=144.36  Aligned_cols=326  Identities=12%  Similarity=0.045  Sum_probs=216.5

Q ss_pred             CCCCCCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCC
Q 038552            2 NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNL   81 (659)
Q Consensus         2 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   81 (659)
                      +|.+|++|+++.+..+ ++.....+|.+|.+|+.+++..+ ++.....+|.++..|+.+.+..+ +.......|.++..+
T Consensus        66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            5788888888888754 55556778888888888888654 55455667888888888777654 334444566666544


Q ss_pred             CEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccC
Q 038552           82 VDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTS  161 (659)
Q Consensus        82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  161 (659)
                      ......  ........+|.+|++|+.+.+..+. . .++...+..+.+|+.+.+..+ ++.+....+.++..|+.+.+..
T Consensus       143 ~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          143 EITIPE--GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             EEECCT--TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             ccccCc--cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence            433322  2233345678889999999987653 3 577777778889999988765 4445566788888888888776


Q ss_pred             CCCccccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccC
Q 038552          162 NQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN  241 (659)
Q Consensus       162 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  241 (659)
                      +...  +...+....+|+.+.+...- +..      -...+..|..|+.+.+..+...  +..........++.+.....
T Consensus       218 ~~~~--i~~~~~~~~~l~~i~ip~~~-~~i------~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~  286 (394)
T 4fs7_A          218 SLYY--LGDFALSKTGVKNIIIPDSF-TEL------GKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSV  286 (394)
T ss_dssp             TCCE--ECTTTTTTCCCCEEEECTTC-CEE------CSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSS
T ss_pred             CceE--eehhhcccCCCceEEECCCc-eec------ccccccccccceeEEcCCCcce--eeccccccccccceeccCce
Confidence            5432  22233445678888776432 111      1234567788888887766432  22222222235666665544


Q ss_pred             cccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCc
Q 038552          242 QISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS  321 (659)
Q Consensus       242 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  321 (659)
                      .+.   ...+..+.+|+.+.+.++ +......+|.++.+|+.++|.++ +......+|.+|++|+.+.+..+ +......
T Consensus       287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  360 (394)
T 4fs7_A          287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN  360 (394)
T ss_dssp             EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred             eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence            332   245678889999988654 55455677889999999999754 55556778999999999999776 6655667


Q ss_pred             cCcCCCCCCEEeCCCcccccccchhhhhccccc
Q 038552          322 SLGNCQILRMFNASRNKLTGALPHQLLSITTLT  354 (659)
Q Consensus       322 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~  354 (659)
                      +|.+|++|+.+++..+ +. .+...+.+++.|+
T Consensus       361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK  391 (394)
T ss_dssp             TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred             HhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence            8999999999998754 22 2344555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.9e-15  Score=130.16  Aligned_cols=84  Identities=21%  Similarity=0.294  Sum_probs=39.2

Q ss_pred             CCCcEEeccccCCC-ccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEe
Q 038552           31 LNLQTLAIDFNYLT-GQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIY  109 (659)
Q Consensus        31 ~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  109 (659)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34455555555444 34444444444555555554444332  3344444455555544444433444444444444444


Q ss_pred             ccCcccc
Q 038552          110 LPFNRFS  116 (659)
Q Consensus       110 l~~n~~~  116 (659)
                      +++|.++
T Consensus        95 ls~N~i~  101 (149)
T 2je0_A           95 LSGNKIK  101 (149)
T ss_dssp             CTTSCCC
T ss_pred             CCCCcCC
Confidence            4444444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=1.1e-13  Score=141.32  Aligned_cols=271  Identities=9%  Similarity=0.084  Sum_probs=203.2

Q ss_pred             CCCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEE
Q 038552            6 YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLN   85 (659)
Q Consensus         6 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   85 (659)
                      +..++.+.+..+ ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.+ .+....+..|.+|++|+.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            467788888764 444567788886 7999999776 666667788885 799999986 56566678899999999999


Q ss_pred             eecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCc
Q 038552           86 VGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLK  165 (659)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  165 (659)
                      +..|.++.....+|. +.+|+.+.+..+ ++ .++...+..+++|+.+++..+ ++.+-..+|.+ .+|+.+.+. +.++
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            999999855555666 689999999854 65 788888888999999999865 55555667777 789999995 4577


Q ss_pred             cccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccc
Q 038552          166 GKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG  245 (659)
Q Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  245 (659)
                      .....+|.++++|+.+.+..+.+....... --...+..|++|+.+.+..+ +                         +.
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~-I~~~aF~~c~~L~~l~l~~~-i-------------------------~~  313 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAM-IHPYCLEGCPKLARFEIPES-I-------------------------RI  313 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCE-ECTTTTTTCTTCCEECCCTT-C-------------------------CE
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccE-ECHHHhhCCccCCeEEeCCc-e-------------------------EE
Confidence            677888999999999999887654111000 11245667777777766522 2                         11


Q ss_pred             cCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCC-CCcEEEccCCccc
Q 038552          246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLT-KLVELPLSYNNLQ  316 (659)
Q Consensus       246 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~  316 (659)
                      .-...|.+|++|+.+.+..+ +......+|.++ +|+.+++.+|.+.......|.+++ .++.|++..+.+.
T Consensus       314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            23346778888999998654 665566788889 999999999988877777788875 7889999877644

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=3.9e-14  Score=129.34  Aligned_cols=110  Identities=23%  Similarity=0.271  Sum_probs=83.0

Q ss_pred             CCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEEC
Q 038552          328 ILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNI  407 (659)
Q Consensus       328 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  407 (659)
                      +|+.|++++|.++ .+|..+..++.++ .|++++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~-~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLT-LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCC-EEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            3444444444444 3444444555554 5556666666566667888899999999999999888888999999999999


Q ss_pred             CCCCCCCCCcccccCCCCCCEEECCCCccccc
Q 038552          408 SRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGL  439 (659)
Q Consensus       408 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (659)
                      ++|.+....+..|..+++|+.|++++|++...
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            99999977777789999999999999998653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=7.3e-14  Score=125.98  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=95.4

Q ss_pred             CcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccc
Q 038552          281 LQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS  360 (659)
Q Consensus       281 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~  360 (659)
                      .+.++++++.+. .+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.++                    
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------------   65 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--------------------   65 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------------------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce--------------------
Confidence            356666666666 333322  256666666666666544445556666666655555544                    


Q ss_pred             cccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc
Q 038552          361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI  440 (659)
Q Consensus       361 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (659)
                           +..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..
T Consensus        66 -----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           66 -----SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             -----EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence                 344445677888999999999998777777888999999999999998777666788999999999999998765


Q ss_pred             h
Q 038552          441 P  441 (659)
Q Consensus       441 ~  441 (659)
                      |
T Consensus       141 ~  141 (177)
T 2o6r_A          141 P  141 (177)
T ss_dssp             H
T ss_pred             c
Confidence            5

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=3.4e-14  Score=127.95  Aligned_cols=134  Identities=19%  Similarity=0.185  Sum_probs=86.1

Q ss_pred             hhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCC
Q 038552           26 EIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSL  105 (659)
Q Consensus        26 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  105 (659)
                      .+.++.+|+.|++++|.++ .++......++|++|++++|.+.+.  ..|..+++|++|++++|.+++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            3455667777777777766 3343223333777777777776543  456777777777777777765433444677777


Q ss_pred             CEEeccCccccccChH--HHhcCCCCCcEEEccCCcCCcccCh----hccCCCCCCEEEccCCCCc
Q 038552          106 EWIYLPFNRFSGSLPL--DIAVNLPNLKALAIGGNNFFGSIPN----SLSNASNLEILDLTSNQLK  165 (659)
Q Consensus       106 ~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~  165 (659)
                      ++|++++|.+. .+|.  .+. .+++|+.|++++|.++. +|.    .+..+++|+.|++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777775 5554  333 57777777777777763 344    3677788888888777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=6.2e-14  Score=126.22  Aligned_cols=103  Identities=18%  Similarity=0.173  Sum_probs=80.3

Q ss_pred             eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcc--cccCCCCCCEEECCC
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL--SLSSLKSIKEFNVSS  433 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~  433 (659)
                      .|++++|.+.+.  ..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+. .+|.  .+..+++|+.|++++
T Consensus        46 ~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~  122 (176)
T 1a9n_A           46 AIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILR  122 (176)
T ss_dssp             EEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred             EEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecC
Confidence            455555554433  45677889999999999998765565688999999999999996 4554  788899999999999


Q ss_pred             Ccccccchh----hhcCCCCCCeeeCcCCcCcc
Q 038552          434 NNLSGLIPE----FLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       434 n~l~~~~~~----~l~~l~~L~~l~l~~n~l~~  462 (659)
                      |.++.. |.    .+..+++|+.||+++|....
T Consensus       123 N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          123 NPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             SGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999754 44    47889999999999987653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1.7e-13  Score=122.24  Aligned_cols=108  Identities=18%  Similarity=0.243  Sum_probs=89.1

Q ss_pred             eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN  435 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  435 (659)
                      .+++++|.+. .+|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|++.+..+..|.++++|+.|+|++|.
T Consensus        13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            5677777776 3555443  788889999999988888888889999999999999987777778889999999999999


Q ss_pred             ccccchhhhcCCCCCCeeeCcCCcCcccCCC
Q 038552          436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK  466 (659)
Q Consensus       436 l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~  466 (659)
                      +++..+..+..+++|+.|++++|++.+.++.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            9887777788889999999999999887663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=6.4e-16  Score=142.32  Aligned_cols=153  Identities=26%  Similarity=0.291  Sum_probs=84.2

Q ss_pred             CCCCCcEEEccCCCCCCCCCc------cccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhc
Q 038552          277 ELKNLQQLSLYNNSLQGSIPS------SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSI  350 (659)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  350 (659)
                      ....++.++++++.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|+.|+++               
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~---------------   78 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLG---------------   78 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEE---------------
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECC---------------
Confidence            344555555555555554443      44445555555555555443 33 44444444444444               


Q ss_pred             ccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCc-ccccCCCCCCEE
Q 038552          351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP-LSLSSLKSIKEF  429 (659)
Q Consensus       351 ~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L  429 (659)
                                +|.+. .+|..+..+++|++|+|++|++++. | .+..+++|++|++++|.+.+..+ ..+..+++|+.|
T Consensus        79 ----------~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A           79 ----------RNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             ----------EEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             ----------CCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence                      44444 3344444455666666666666542 2 45556666666666666654322 356667777777


Q ss_pred             ECCCCcccccchh----------hhcCCCCCCeeeCcCCcCc
Q 038552          430 NVSSNNLSGLIPE----------FLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       430 ~l~~n~l~~~~~~----------~l~~l~~L~~l~l~~n~l~  461 (659)
                      ++++|.+++.+|.          .+..+++|+.||  +|+++
T Consensus       146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            7777777665443          266777777776  55443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=6.7e-16  Score=142.20  Aligned_cols=154  Identities=23%  Similarity=0.260  Sum_probs=94.1

Q ss_pred             cCCCCCcEEeccccCCCccccc------cccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccC
Q 038552           28 GSLLNLQTLAIDFNYLTGQLPD------FVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICN  101 (659)
Q Consensus        28 ~~~~~L~~L~ls~~~~~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  101 (659)
                      .....++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3344555555555555555444      66666666666666666644 44 5666666777777766666 45555666


Q ss_pred             CCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccC-hhccCCCCCCEEEccCCCCcccccc----------
Q 038552          102 ISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSI----------  170 (659)
Q Consensus       102 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~----------  170 (659)
                      +++|++|++++|.++ .+| .+. .+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|.          
T Consensus        92 ~~~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  168 (198)
T 1ds9_A           92 ADTLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE  168 (198)
T ss_dssp             HHHCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred             CCcCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence            666777777777666 344 333 56667777777776664322 3566777777777777776655443          


Q ss_pred             ccCCCCCCCEEECCCCCCC
Q 038552          171 DFSSLKNLSWLNLEQNNLG  189 (659)
Q Consensus       171 ~l~~l~~L~~L~l~~n~l~  189 (659)
                      .+..+++|+.|+  ++.++
T Consensus       169 ~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          169 VVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHCSSCSEEC--CGGGT
T ss_pred             HHHhCCCcEEEC--CcccC
Confidence            256777777776  44443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=3.7e-13  Score=120.42  Aligned_cols=107  Identities=20%  Similarity=0.271  Sum_probs=88.9

Q ss_pred             eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN  435 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  435 (659)
                      .+++++|.+. .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++.+..+..|..+++|+.|+|++|.
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            5777777775 5565554  788999999999988888888899999999999999987766677889999999999999


Q ss_pred             ccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       436 l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      +++..+..+..+++|+.|++++|++.+.++
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            987766678889999999999999887665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.43  E-value=1.4e-11  Score=126.34  Aligned_cols=331  Identities=11%  Similarity=0.108  Sum_probs=164.6

Q ss_pred             cccccCCC-CCcEEEccCCccCcccccccCCCCCCCEEEeecCc---CCccCcccccCCCCCCEEeccCccccccChHHH
Q 038552           48 PDFVGNLS-ALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENR---FSGMFPRSICNISSLEWIYLPFNRFSGSLPLDI  123 (659)
Q Consensus        48 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  123 (659)
                      ..+|.++. .|+.+.+..+ ++..-..+|.+|.+|+.+.+..+.   ++..-..+|.+|.+|+.+.+..+ ++ .++...
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a  132 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA  132 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence            34555553 4666666543 444445566677777777665542   44344456666666766666543 33 455555


Q ss_pred             hcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEECCCCCCCCCCCCCcccccccc
Q 038552          124 AVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLT  203 (659)
Q Consensus       124 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~  203 (659)
                      +..+.+|+.+.+..+ ...+....+..+..|+.+.+..+ ++.....+|.. .+|+.+.+..+-..       ....++.
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-------i~~~af~  202 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-------IGTNAFS  202 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-------ECTTTTT
T ss_pred             hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-------cccchhh
Confidence            556666777766533 23344455666677777766543 33333444443 45666666543211       1122344


Q ss_pred             CCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcE
Q 038552          204 NCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQ  283 (659)
Q Consensus       204 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  283 (659)
                      .|..+............ ....+..           .+.........+.....+..+.+.. .+......+|..+..|+.
T Consensus       203 ~c~~l~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~  269 (394)
T 4gt6_A          203 ECFALSTITSDSESYPA-IDNVLYE-----------KSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLAS  269 (394)
T ss_dssp             TCTTCCEEEECCSSSCB-SSSCEEE-----------ECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCE
T ss_pred             hccccceeccccccccc-ccceeec-----------ccccccccccccccccccceEEcCC-cceEcccceeeecccccE
Confidence            55556555544332210 0000000           0000000000011112222333321 122223345666777777


Q ss_pred             EEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceecccccc
Q 038552          284 LSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNL  363 (659)
Q Consensus       284 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~  363 (659)
                      +.+.++... .....|.+++.|+.+.+.. .+......+|.+|.+|+.+++..+ ++                       
T Consensus       270 i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-----------------------  323 (394)
T 4gt6_A          270 VKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-----------------------  323 (394)
T ss_dssp             EECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-----------------------
T ss_pred             Eecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-----------------------
Confidence            777654332 4455666777777777743 344344456777777777666432 21                       


Q ss_pred             ccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcc
Q 038552          364 LNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL  436 (659)
Q Consensus       364 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  436 (659)
                        .....+|.+|.+|+.+.|..+ ++.+...+|.+|++|+.+++.++...   ..++..+.+|+.+.+..|.+
T Consensus       324 --~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          324 --QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             --EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             --EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence              122346677777777777544 55455567777788888877776432   13566677777777766544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.40  E-value=4.6e-11  Score=122.58  Aligned_cols=335  Identities=11%  Similarity=0.100  Sum_probs=193.9

Q ss_pred             cccCchhhcCCC-CCcEEeccccCCCccccccccCCCCCcEEEccCCc---cCcccccccCCCCCCCEEEeecCcCCccC
Q 038552           20 EGQIPEEIGSLL-NLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS---LGGKIPTTLGLLRNLVDLNVGENRFSGMF   95 (659)
Q Consensus        20 ~~~~~~~~~~~~-~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~   95 (659)
                      +.....+|.++. .|+.+.+..+ ++.....+|.++.+|+.+.+..+.   +......+|.+|.+|+.+.+..+ ++...
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence            334456677764 4777777543 555566677777777777776542   43344566777777777766543 44445


Q ss_pred             cccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCC
Q 038552           96 PRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSL  175 (659)
Q Consensus        96 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  175 (659)
                      ..+|..+.+|+.+.+..+ +. .++...+..+.+|+.+.+..+ ++.+-...|. ...|+.+.+..+ +......+|..+
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c  204 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSEC  204 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTC
T ss_pred             hhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCc-ccccccchhhhc
Confidence            566777778888777643 22 455555556777887777654 3323334443 356888877654 333445567777


Q ss_pred             CCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCC
Q 038552          176 KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLV  255 (659)
Q Consensus       176 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  255 (659)
                      .++.......+........   +   .............       .+.     ...+..+.+.. .++......|.++.
T Consensus       205 ~~l~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~-------~~~-----~~~~~~~~ip~-~v~~i~~~aF~~c~  265 (394)
T 4gt6_A          205 FALSTITSDSESYPAIDNV---L---YEKSANGDYALIR-------YPS-----QREDPAFKIPN-GVARIETHAFDSCA  265 (394)
T ss_dssp             TTCCEEEECCSSSCBSSSC---E---EEECTTSCEEEEE-------CCT-----TCCCSEEECCT-TEEEECTTTTTTCS
T ss_pred             cccceecccccccccccce---e---ecccccccccccc-------ccc-----ccccceEEcCC-cceEcccceeeecc
Confidence            7888777655443221100   0   0000000000000       000     00122222221 12222345677888


Q ss_pred             CcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCC
Q 038552          256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS  335 (659)
Q Consensus       256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  335 (659)
                      .|+.+.+.++.. .....+|..+.+|+.+.+. +.+......+|.+|++|+.+.+..+ ++.....+|.+|.+|+.+.+.
T Consensus       266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             SCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            999998865432 3445678889999999996 4455466678999999999999764 554556789999999988775


Q ss_pred             CcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCC
Q 038552          336 RNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFF  412 (659)
Q Consensus       336 ~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  412 (659)
                      .+ ++                         .....+|.+|++|+.+++.++....   ..+..+..|+.+.+..+.+
T Consensus       343 ~s-v~-------------------------~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          343 SS-VT-------------------------KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TT-CC-------------------------BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             cc-cC-------------------------EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            43 22                         1223567777888888887775432   3566777888877766644

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=2.3e-12  Score=114.91  Aligned_cols=107  Identities=21%  Similarity=0.233  Sum_probs=79.3

Q ss_pred             CCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEee
Q 038552            8 NLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVG   87 (659)
Q Consensus         8 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   87 (659)
                      ..+++++++|.++ .+|..+.  .+|++|++++|.+++..|..|.++++|++|+|++|.+.+..+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3567888888777 4565553  677888888888877777777788888888888888776666667778888888888


Q ss_pred             cCcCCccCcccccCCCCCCEEeccCccccc
Q 038552           88 ENRFSGMFPRSICNISSLEWIYLPFNRFSG  117 (659)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  117 (659)
                      +|.+++..+..|..+++|++|++++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            887776555567777778888887777763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=4.4e-12  Score=113.43  Aligned_cols=104  Identities=23%  Similarity=0.319  Sum_probs=68.5

Q ss_pred             CEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecC
Q 038552           10 IELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGEN   89 (659)
Q Consensus        10 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   89 (659)
                      +.+++++|.+. .+|..+.  ++|++|++++|.+++..|..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56677777665 5555553  56777777777777666666777777777777777765544455666777777777777


Q ss_pred             cCCccCcccccCCCCCCEEeccCcccc
Q 038552           90 RFSGMFPRSICNISSLEWIYLPFNRFS  116 (659)
Q Consensus        90 ~l~~~~~~~~~~l~~L~~L~l~~n~~~  116 (659)
                      .+++..+..|..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            766544445666677777777766665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=6.6e-13  Score=134.18  Aligned_cols=160  Identities=18%  Similarity=0.190  Sum_probs=94.3

Q ss_pred             CCCCcEEEccCCCCCCCCCcccc-----CCCCCcEEEccCCccccccCccC-cCCCCCCEEeCCCcccccccchhhhhcc
Q 038552          278 LKNLQQLSLYNNSLQGSIPSSLG-----NLTKLVELPLSYNNLQGNIPSSL-GNCQILRMFNASRNKLTGALPHQLLSIT  351 (659)
Q Consensus       278 ~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~  351 (659)
                      +++|+.|++++|.+.......+.     ..++|++|+|++|.++......+ ..+++|+.|                   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L-------------------  131 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL-------------------  131 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEE-------------------
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHh-------------------
Confidence            35677777777776532222211     12456666666665543221111 122344444                   


Q ss_pred             cccceeccccccccCCCcccc-----ccCCCCceeecCCCccccc----CCccccCCCCCCeEECCCCCCCCC----Ccc
Q 038552          352 TLTLSLDLSNNLLNGSLPLQV-----GNLKNLVKLDISGNQFSGV----IPVTLSACVSLEYLNISRNFFHGI----IPL  418 (659)
Q Consensus       352 ~l~~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~  418 (659)
                            +|++|.+++.....+     ...++|++|+|++|.+++.    ++..+..+++|++|+|++|.+.+.    ++.
T Consensus       132 ------~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          132 ------GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             ------ECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             ------hcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence                  444444433222222     2356788888888877643    333446677888888888887643    245


Q ss_pred             cccCCCCCCEEECCCCccccc----chhhhcCCCCCCeeeCcCCcCcc
Q 038552          419 SLSSLKSIKEFNVSSNNLSGL----IPEFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       419 ~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~l~l~~n~l~~  462 (659)
                      .+...++|+.|+|++|.++..    ++..+...++|++|++++|++..
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            566777888888888888653    33455567888888888887753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=6.5e-13  Score=134.23  Aligned_cols=159  Identities=16%  Similarity=0.107  Sum_probs=88.8

Q ss_pred             CCCcEEeccccCCCcccccccc-----CCCCCcEEEccCCccCccccccc-CCCCCCCEEEeecCcCCccCcccc-----
Q 038552           31 LNLQTLAIDFNYLTGQLPDFVG-----NLSALKVFYIIGNSLGGKIPTTL-GLLRNLVDLNVGENRFSGMFPRSI-----   99 (659)
Q Consensus        31 ~~L~~L~ls~~~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-----   99 (659)
                      ++|+.|++++|.++......+.     ..++|++|+|++|.+.......+ ..+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4566666666666543333322     22566666666666543222222 234566666666666654333332     


Q ss_pred             cCCCCCCEEeccCcccccc----ChHHHhcCCCCCcEEEccCCcCCcc----cChhccCCCCCCEEEccCCCCcccc---
Q 038552          100 CNISSLEWIYLPFNRFSGS----LPLDIAVNLPNLKALAIGGNNFFGS----IPNSLSNASNLEILDLTSNQLKGKV---  168 (659)
Q Consensus       100 ~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~---  168 (659)
                      ...++|++|++++|.++..    ++..+. ..++|++|++++|.++..    +...+...++|++|++++|.+++..   
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence            2345677777777766521    222222 456677777777766532    2344566677777777777776432   


Q ss_pred             -ccccCCCCCCCEEECCCCCCCC
Q 038552          169 -SIDFSSLKNLSWLNLEQNNLGM  190 (659)
Q Consensus       169 -~~~l~~l~~L~~L~l~~n~l~~  190 (659)
                       ...+...++|++|+|++|.++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence             2234456777777777777754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=2.1e-11  Score=122.91  Aligned_cols=107  Identities=22%  Similarity=0.219  Sum_probs=71.1

Q ss_pred             eeccccc-cccCCCccccccCCCCceeecCC-CcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCC
Q 038552          356 SLDLSNN-LLNGSLPLQVGNLKNLVKLDISG-NQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSS  433 (659)
Q Consensus       356 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  433 (659)
                      .++.+++ .+. .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++.+..|..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3455555 555 3555 66667777777774 777766666677777777777777777766666677777777777777


Q ss_pred             CcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          434 NNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       434 n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      |.|++..+..+..++ |+.|++++|++.+.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            777765555555554 7777777777766544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=1e-10  Score=117.89  Aligned_cols=103  Identities=20%  Similarity=0.234  Sum_probs=74.5

Q ss_pred             EEEccCC-cccccCchhhcCCCCCcEEeccc-cCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeec
Q 038552           11 ELRVSKN-KLEGQIPEEIGSLLNLQTLAIDF-NYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE   88 (659)
Q Consensus        11 ~L~ls~n-~~~~~~~~~~~~~~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   88 (659)
                      .++.+++ .++ .+|. +..+.+|++|+|++ |.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4577776 676 4676 77777788888875 777766667777777788888877777777777777777777777777


Q ss_pred             CcCCccCcccccCCCCCCEEeccCcccc
Q 038552           89 NRFSGMFPRSICNISSLEWIYLPFNRFS  116 (659)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~l~~n~~~  116 (659)
                      |.+++..+..+..+. |++|++.+|.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            777754444555554 777777777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.07  E-value=1.1e-08  Score=104.17  Aligned_cols=146  Identities=15%  Similarity=0.202  Sum_probs=86.0

Q ss_pred             ccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhccc
Q 038552          273 DTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITT  352 (659)
Q Consensus       273 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  352 (659)
                      ..+..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.            
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~------------  275 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK------------  275 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS------------
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce------------
Confidence            34455566666666543 22234445666666776666554 33334455666666666655322 11            


Q ss_pred             ccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECC
Q 038552          353 LTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVS  432 (659)
Q Consensus       353 l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  432 (659)
                                   .....+|.++++|+.+.+.++.++.+...+|.+|++|+.++|..+ +..+...+|.+|.+|+.+.+.
T Consensus       276 -------------~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          276 -------------TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             -------------EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             -------------eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence                         122235666777777777777676666677777777777777654 544555677777788777776


Q ss_pred             CCcccccchhhhcCCC
Q 038552          433 SNNLSGLIPEFLKNLS  448 (659)
Q Consensus       433 ~n~l~~~~~~~l~~l~  448 (659)
                      .+ ++..-..+|..++
T Consensus       342 ~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          342 KS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TT-CCEECTTTTTTSS
T ss_pred             Cc-cCEEchhHhhCCC
Confidence            54 4434345555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.04  E-value=2.3e-08  Score=101.90  Aligned_cols=290  Identities=12%  Similarity=0.056  Sum_probs=173.7

Q ss_pred             hcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCC
Q 038552           27 IGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLE  106 (659)
Q Consensus        27 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  106 (659)
                      +....+|+.+.+.. .++.....+|.++.+|+.+.+..+ +......+|.++ +|+.+.+..+ ++.....+|..+ +|+
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~  116 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD  116 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence            44556677777754 345455567777777777777643 444445666666 5666666433 443334455544 677


Q ss_pred             EEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcc------------ccccccCC
Q 038552          107 WIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG------------KVSIDFSS  174 (659)
Q Consensus       107 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l~~  174 (659)
                      .+.+..+- + .+....+.. .+++.+.+..+ ++......+..+..++.+.+..+....            .....+..
T Consensus       117 ~i~lp~~~-~-~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          117 DFEFPGAT-T-EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             EEECCTTC-C-EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             cccCCCcc-c-ccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence            77776542 2 344444422 35555555433 333444556667777777665443221            11123344


Q ss_pred             CCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccC
Q 038552          175 LKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNL  254 (659)
Q Consensus       175 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  254 (659)
                      ...+..+.+......       .....+..+..|+.+.+..+- . .+......-...|+.+.+..+ ++......+.++
T Consensus       193 ~~~~~~~~~~~~~~~-------i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~  262 (379)
T 4h09_A          193 AKTGTEFTIPSTVKT-------VTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC  262 (379)
T ss_dssp             TCCCSEEECCTTCCE-------ECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC
T ss_pred             cccccccccccceeE-------Eeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCcccccee
Confidence            455555554432111       122334556677777665442 1 122222222236777777654 443445667888


Q ss_pred             CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeC
Q 038552          255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNA  334 (659)
Q Consensus       255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  334 (659)
                      .+|+.+.+..+ +.......|.++.+|+.+.+.++.+......+|.+|++|+.+.+..+ ++.....+|.+|.+|+.+.+
T Consensus       263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            89999988643 54445567889999999999988887667788999999999999754 55455678999999999988


Q ss_pred             CCc
Q 038552          335 SRN  337 (659)
Q Consensus       335 ~~n  337 (659)
                      ..+
T Consensus       341 p~~  343 (379)
T 4h09_A          341 PKS  343 (379)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.91  E-value=8.6e-10  Score=110.25  Aligned_cols=84  Identities=23%  Similarity=0.224  Sum_probs=50.0

Q ss_pred             cCCCCceeecCCCcccccCCccc---cCCCCCCeEECCCCCCCCC----CcccccCCCCCCEEECCCCcccccchhhhcC
Q 038552          374 NLKNLVKLDISGNQFSGVIPVTL---SACVSLEYLNISRNFFHGI----IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKN  446 (659)
Q Consensus       374 ~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  446 (659)
                      .+++|++|+|++|.+.+..+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            46778888887777764332222   2466777777777777653    2333345677777777777766443333332


Q ss_pred             -CCCCCeeeCcCCc
Q 038552          447 -LSFMEFLDLSYNH  459 (659)
Q Consensus       447 -l~~L~~l~l~~n~  459 (659)
                       +  ...+++++++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3456666664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=1.3e-09  Score=109.05  Aligned_cols=182  Identities=18%  Similarity=0.160  Sum_probs=106.1

Q ss_pred             hhhcCCCCCcEEeccccCCC---------ccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccC
Q 038552           25 EEIGSLLNLQTLAIDFNYLT---------GQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMF   95 (659)
Q Consensus        25 ~~~~~~~~L~~L~ls~~~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~   95 (659)
                      .+...+++|+.|.+.+....         +.+...+..+++|+.|+|++|.- -.++. + .+++|++|++..+.+....
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHH
Confidence            34455667777777554221         12445556778888888877631 12222 3 3678888888877765433


Q ss_pred             ccccc--CCCCCCEEeccC--cccccc-----ChHHHh-cCCCCCcEEEccCCcCCcccChhcc---CCCCCCEEEccCC
Q 038552           96 PRSIC--NISSLEWIYLPF--NRFSGS-----LPLDIA-VNLPNLKALAIGGNNFFGSIPNSLS---NASNLEILDLTSN  162 (659)
Q Consensus        96 ~~~~~--~l~~L~~L~l~~--n~~~~~-----~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~n  162 (659)
                      ...+.  .+++|++|+|+.  +...+.     +...+. ..+++|+.|++.+|.+....+..+.   .+++|++|+|+.|
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            33443  678888887753  111111     111111 1467888888888877643333332   4678888888888


Q ss_pred             CCcccc----ccccCCCCCCCEEECCCCCCCCCCCCCccccccccC-CCCCcEEEccCCc
Q 038552          163 QLKGKV----SIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTN-CSSLKVISLYANQ  217 (659)
Q Consensus       163 ~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~n~  217 (659)
                      .+++..    ...+..+++|+.|+++.|.++.      .....+.. +  ...++++.++
T Consensus       290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d------~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD------EMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH------HHHHHHHHHC--CSEEECCSBC
T ss_pred             CCChHHHHHHHhhcccCCcceEEECCCCcCCH------HHHHHHHHHc--CCEEEecCCc
Confidence            877642    2233456888888888887764      22222221 1  3457777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.50  E-value=3.8e-08  Score=88.60  Aligned_cols=117  Identities=14%  Similarity=0.097  Sum_probs=73.6

Q ss_pred             chhhcCCCCCcEEecccc-CCCcc----ccccccCCCCCcEEEccCCccCcc----cccccCCCCCCCEEEeecCcCCcc
Q 038552           24 PEEIGSLLNLQTLAIDFN-YLTGQ----LPDFVGNLSALKVFYIIGNSLGGK----IPTTLGLLRNLVDLNVGENRFSGM   94 (659)
Q Consensus        24 ~~~~~~~~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~   94 (659)
                      ...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344566777777777777 66542    344456667777777777776432    223344556777788877777643


Q ss_pred             ----CcccccCCCCCCEEec--cCccccccC----hHHHhcCCCCCcEEEccCCcCC
Q 038552           95 ----FPRSICNISSLEWIYL--PFNRFSGSL----PLDIAVNLPNLKALAIGGNNFF  141 (659)
Q Consensus        95 ----~~~~~~~l~~L~~L~l--~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~~~  141 (659)
                          +...+...++|++|++  ++|.+...-    ...+. ..++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence                4455666777888888  667776332    22222 3467888888877764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=5.2e-08  Score=87.70  Aligned_cols=120  Identities=18%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             ccCcCCCCCCEEeCCCc-ccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc----CCcc
Q 038552          321 SSLGNCQILRMFNASRN-KLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV----IPVT  395 (659)
Q Consensus       321 ~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~  395 (659)
                      ..+...++|++|++++| .+...-...                     +...+...++|++|+|++|.+.+.    +...
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~---------------------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~   88 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKA---------------------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEM   88 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHH---------------------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHH---------------------HHHHHHhCCCcCEEECcCCCCChHHHHHHHHH
Confidence            34555677777777777 665221111                     112334455666677777766532    2233


Q ss_pred             ccCCCCCCeEECCCCCCCCC----CcccccCCCCCCEEEC--CCCccccc----chhhhcCCCCCCeeeCcCCcCc
Q 038552          396 LSACVSLEYLNISRNFFHGI----IPLSLSSLKSIKEFNV--SSNNLSGL----IPEFLKNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       396 ~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~l~l~~n~l~  461 (659)
                      +...++|++|+|++|.+...    +...+...++|+.|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus        89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            44556677777777776643    3445666677777777  66777543    3345555677777777777653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=8.1e-08  Score=90.73  Aligned_cols=80  Identities=21%  Similarity=0.310  Sum_probs=55.0

Q ss_pred             ccCCCCceeecCCCcccc--cCCccccCCCCCCeEECCCCCCCCCCcccccCCC--CCCEEECCCCcccccch-------
Q 038552          373 GNLKNLVKLDISGNQFSG--VIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLK--SIKEFNVSSNNLSGLIP-------  441 (659)
Q Consensus       373 ~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~-------  441 (659)
                      .++++|+.|+|++|.+++  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|+|++|++++.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457788888888888876  3445566778888888888887754  2233333  78888888888876544       


Q ss_pred             hhhcCCCCCCeee
Q 038552          442 EFLKNLSFMEFLD  454 (659)
Q Consensus       442 ~~l~~l~~L~~l~  454 (659)
                      ..+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2356777777775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=7.9e-08  Score=90.81  Aligned_cols=81  Identities=23%  Similarity=0.281  Sum_probs=53.4

Q ss_pred             cCCCCCcEEEccCCccCc--ccccccCCCCCCCEEEeecCcCCccCcccccCCC--CCCEEeccCccccccChH------
Q 038552           52 GNLSALKVFYIIGNSLGG--KIPTTLGLLRNLVDLNVGENRFSGMFPRSICNIS--SLEWIYLPFNRFSGSLPL------  121 (659)
Q Consensus        52 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~------  121 (659)
                      .++++|+.|+|++|.+.+  .+|..+..+++|++|+|++|.+++.  ..+..+.  +|++|++++|.+++.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456777777777777765  3445566777777777777777654  2333333  788888888887765541      


Q ss_pred             HHhcCCCCCcEEE
Q 038552          122 DIAVNLPNLKALA  134 (659)
Q Consensus       122 ~~~~~l~~L~~L~  134 (659)
                      .+...+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2334678888776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=5.6e-07  Score=78.51  Aligned_cols=84  Identities=15%  Similarity=0.095  Sum_probs=51.2

Q ss_pred             CCCceeecCCCcccccCCccccCCCCCCeEECCCCC-CCCCCcccccCC----CCCCEEECCCCc-ccccchhhhcCCCC
Q 038552          376 KNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNF-FHGIIPLSLSSL----KSIKEFNVSSNN-LSGLIPEFLKNLSF  449 (659)
Q Consensus       376 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~  449 (659)
                      ..|++|+|++|.+++..-..+..|++|++|+|++|. ++...-..+..+    ++|+.|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356677777776665555556667777777777774 544333334443    357777777764 55443345566677


Q ss_pred             CCeeeCcCCc
Q 038552          450 MEFLDLSYNH  459 (659)
Q Consensus       450 L~~l~l~~n~  459 (659)
                      |+.|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=1e-06  Score=76.86  Aligned_cols=91  Identities=9%  Similarity=0.096  Sum_probs=70.3

Q ss_pred             chhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCc-cCcccccccCCC----CCCCEEEeecCc-CCccCcc
Q 038552           24 PEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS-LGGKIPTTLGLL----RNLVDLNVGENR-FSGMFPR   97 (659)
Q Consensus        24 ~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~   97 (659)
                      |.....-..|+.||+++|.++..--..+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. ++..--.
T Consensus        54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            4333334579999999999887767778899999999999985 655444556654    479999999985 7765556


Q ss_pred             cccCCCCCCEEeccCcc
Q 038552           98 SICNISSLEWIYLPFNR  114 (659)
Q Consensus        98 ~~~~l~~L~~L~l~~n~  114 (659)
                      .+..+++|++|++++|.
T Consensus       134 ~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HGGGCTTCCEEEEESCT
T ss_pred             HHhcCCCCCEEECCCCC
Confidence            77889999999999885

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.17  E-value=0.00017  Score=64.17  Aligned_cols=87  Identities=20%  Similarity=0.202  Sum_probs=44.6

Q ss_pred             cccCCCCceeecCCCcccccC----CccccCCCCCCeEECCCCCCCCC----CcccccCCCCCCEEECCCC---cccc--
Q 038552          372 VGNLKNLVKLDISGNQFSGVI----PVTLSACVSLEYLNISRNFFHGI----IPLSLSSLKSIKEFNVSSN---NLSG--  438 (659)
Q Consensus       372 l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n---~l~~--  438 (659)
                      +..-+.|++|+|++|++.+..    .+.+..-+.|++|+|++|.|...    +..++..-+.|+.|+|++|   .+..  
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            344455666666666664321    22233445666666666666533    2234445556666666654   2221  


Q ss_pred             --cchhhhcCCCCCCeeeCcCC
Q 038552          439 --LIPEFLKNLSFMEFLDLSYN  458 (659)
Q Consensus       439 --~~~~~l~~l~~L~~l~l~~n  458 (659)
                        .+.+.+..-++|+.|+++.|
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCcCeEeccCC
Confidence              13344555566666666544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.14  E-value=0.00022  Score=63.41  Aligned_cols=86  Identities=15%  Similarity=0.100  Sum_probs=41.5

Q ss_pred             cCCCCCcEEecccc-CCCcc----ccccccCCCCCcEEEccCCccCcc----cccccCCCCCCCEEEeecCcCCcc----
Q 038552           28 GSLLNLQTLAIDFN-YLTGQ----LPDFVGNLSALKVFYIIGNSLGGK----IPTTLGLLRNLVDLNVGENRFSGM----   94 (659)
Q Consensus        28 ~~~~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----   94 (659)
                      .+-+.|+.|+|+++ .+...    +.+++...+.|+.|+|++|.+...    +...+..-+.|++|+|+.|.+...    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34455555555553 44321    334445555566666665555321    112233345566666666665432    


Q ss_pred             CcccccCCCCCCEEeccCc
Q 038552           95 FPRSICNISSLEWIYLPFN  113 (659)
Q Consensus        95 ~~~~~~~l~~L~~L~l~~n  113 (659)
                      +..++..-+.|++|+|+++
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence            2233444455666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.93  E-value=0.0016  Score=54.03  Aligned_cols=60  Identities=20%  Similarity=0.337  Sum_probs=37.3

Q ss_pred             eEECCCCCCC-CCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          404 YLNISRNFFH-GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       404 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|.|+...+..|..+++|+.|++++|++.+.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            5566666654 23443322  357777777777776656666777777777777777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.31  E-value=0.0072  Score=49.99  Aligned_cols=56  Identities=16%  Similarity=0.283  Sum_probs=39.2

Q ss_pred             eeecCCCccc-ccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccc
Q 038552          380 KLDISGNQFS-GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS  437 (659)
Q Consensus       380 ~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  437 (659)
                      .++.+++.++ ..+|..+.  ++|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666665 23443322  36788888888888776777788888888888888774

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=95.65  E-value=0.0088  Score=58.78  Aligned_cols=64  Identities=28%  Similarity=0.467  Sum_probs=49.9

Q ss_pred             CCChHHHHHHHhccc-cccccccccchhhhccccchhhhhHHHHHHHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          573 GLTLHEYAKMALQEK-VMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       573 ~~~l~~~~~~~~~~~-~~~i~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      ...+.+|++....+. ..+++++.+......              ++...+.++...|.+.+|.+||+|.+|+++|++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          245 DVMLLDWVKGLLKEKKLEALVDVDLQGNYKD--------------EEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             CSBHHHHHTTTTSSCCSTTSSCTTCTTSCCH--------------HHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             chhHHHHHHHHhhchhhhhhcChhhccccCH--------------HHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            346778888777765 667777777554443              5566788999999999999999999999999753

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=95.58  E-value=0.014  Score=56.51  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          617 ECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       617 ~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      ++...+.++...|.+.+|.+||||.||+++|+.+++.
T Consensus       262 ~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          262 EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            4555678899999999999999999999999998753

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=95.44  E-value=0.025  Score=55.35  Aligned_cols=64  Identities=28%  Similarity=0.316  Sum_probs=46.3

Q ss_pred             ChHHHHHHHhccc-cccccccccchhhhccccchhhhhHHHHHHHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          575 TLHEYAKMALQEK-VMEIIDPSLLMDVIENNSKIREDRRAKLEECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       575 ~l~~~~~~~~~~~-~~~i~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      ....|+......+ ..+++|+.+......              +....+.++...|.+.+|.+||+|.+|++.|+.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~  315 (321)
T 2qkw_B          251 NLAEWAVESHNNGQLEQIVDPNLADKIRP--------------ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR  315 (321)
T ss_dssp             CHHHHTHHHHTTTCCCSSSSSSCTTCSCH--------------HHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccccHHHhcChhhccccCH--------------HHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence            4555655554444 567777776543332              445567788889999999999999999999998764

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=94.03  E-value=0.036  Score=53.53  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=29.9

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL  655 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~  655 (659)
                      +.++...|.+.+|.+||||.||+.+|+.+++.+.
T Consensus       270 l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp  303 (307)
T 3omv_A          270 MKRLVADCVKKVKEERPLFPQILSSIELLQHSLP  303 (307)
T ss_dssp             HHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence            4567788999999999999999999999987653

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=93.78  E-value=0.043  Score=53.67  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=28.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||||.||+.+|+.++++
T Consensus       289 ~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          289 VYAIMRGCWQREPQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             HHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence            45677889999999999999999999999764

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=92.43  E-value=0.091  Score=50.54  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=28.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||+|.+|+.+|+.+.++
T Consensus       259 ~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~  290 (299)
T 4asz_A          259 VYELMLGCWQREPHMRKNIKGIHTLLQNLAKA  290 (299)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence            45677889999999999999999999988753

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=91.52  E-value=0.093  Score=50.70  Aligned_cols=29  Identities=24%  Similarity=0.273  Sum_probs=25.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.||+..|++.
T Consensus       276 ~~~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          276 VYALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            55777899999999999999999999753

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=91.18  E-value=0.23  Score=47.86  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             HHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          619 LNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       619 ~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      ...+.++...|.+.+|.+||+|.+|+.+|+.++.
T Consensus       273 ~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          273 VEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             HHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            3356778889999999999999999999998864

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=90.90  E-value=0.18  Score=49.09  Aligned_cols=35  Identities=9%  Similarity=0.078  Sum_probs=30.6

Q ss_pred             HHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          619 LNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       619 ~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      ...+.++...|.+.+|.+||+|.+|+++|+.+++.
T Consensus       285 ~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          285 MAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             HHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            34567888899999999999999999999999863

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=90.56  E-value=0.19  Score=49.06  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL  655 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~  655 (659)
                      +.++...|.+.+|.+||++.+|+.+|+.+++.+.
T Consensus       292 l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l~  325 (326)
T 2w1i_A          292 IYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMA  325 (326)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence            4566778999999999999999999999998764

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=90.42  E-value=0.17  Score=48.46  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=28.7

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF  654 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~  654 (659)
                      +.++...|.+.+|.+||++.+|+.+|+.+++.+
T Consensus       261 l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          261 IYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence            456677899999999999999999999998754

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=89.48  E-value=0.24  Score=48.85  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=27.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||||.+|++.|+.+-++
T Consensus       317 ~~~li~~c~~~dP~~RPt~~eil~~L~~llq~  348 (353)
T 4ase_A          317 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  348 (353)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence            34566789999999999999999999887653

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=89.35  E-value=0.29  Score=48.01  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          617 ECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       617 ~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      ++...+.++...|.+.+|.+||+|.+|++.|+.+.+.
T Consensus       301 ~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          301 EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             HHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            4445677888999999999999999999999999764

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=89.21  E-value=0.29  Score=47.57  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhc
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLG  656 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~  656 (659)
                      +.++...|.+.+|.+||++.+|+.+|+.+.+.+.+
T Consensus       280 l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~  314 (318)
T 3lxp_A          280 VYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG  314 (318)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence            45666789999999999999999999999887654

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=88.47  E-value=0.29  Score=47.23  Aligned_cols=34  Identities=18%  Similarity=0.139  Sum_probs=29.2

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL  655 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~  655 (659)
                      +.++...|.+.+|.+||++.++++.|+.++....
T Consensus       252 l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~  285 (310)
T 3s95_A          252 FFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLA  285 (310)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence            4466678999999999999999999999987543

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=88.42  E-value=0.36  Score=47.16  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          617 ECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       617 ~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      ++...+.++...|.+.+|.+||++.+|++.|+.+.+.
T Consensus       296 ~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~  332 (337)
T 3mdy_A          296 ECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSES  332 (337)
T ss_dssp             HHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhh
Confidence            3344567888899999999999999999999998764

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=88.40  E-value=0.34  Score=46.42  Aligned_cols=32  Identities=19%  Similarity=0.274  Sum_probs=28.2

Q ss_pred             HHHHHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          619 LNAIIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       619 ~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      ...+.++...|.+.+|.+||+|.+|+++|+.+
T Consensus       269 ~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          269 LTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             HHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            34567888899999999999999999999875

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=87.34  E-value=0.44  Score=45.62  Aligned_cols=36  Identities=14%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhcC
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGR  657 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~~  657 (659)
                      +.++...|.+.+|.+||++.+++++|+.+...+.+.
T Consensus       261 l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~~  296 (298)
T 3f66_A          261 LYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE  296 (298)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCCS
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhccC
Confidence            445667899999999999999999999998876654

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=86.83  E-value=0.49  Score=45.20  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhcC
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGR  657 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~~  657 (659)
                      +.++...|.+.+|.+||++.+++.+|+.+.+.+.+.
T Consensus       257 l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~  292 (298)
T 3pls_A          257 LYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD  292 (298)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence            446667899999999999999999999998876654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=86.77  E-value=0.44  Score=47.47  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=28.7

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      .+.++...|.+.+|.+||+|.+|+.+|+.+...
T Consensus       278 ~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  310 (373)
T 2qol_A          278 ALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN  310 (373)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence            356777889999999999999999999988653

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=86.75  E-value=0.48  Score=46.26  Aligned_cols=36  Identities=8%  Similarity=0.036  Sum_probs=31.3

Q ss_pred             HHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhc
Q 038552          621 AIIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLG  656 (659)
Q Consensus       621 ~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~  656 (659)
                      .+.++...|.+.+|.+||++.||+++|+.+.+.+..
T Consensus       287 ~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~  322 (336)
T 3g2f_A          287 SLKETIEDCWDQDAEARLTAQXAEERMAELMMIWER  322 (336)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHh
Confidence            466777889999999999999999999999876643

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=86.71  E-value=0.46  Score=45.80  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=28.9

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL  655 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~  655 (659)
                      +.++...|.+.+|.+||+|.+|+++|+.++..+.
T Consensus       233 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  266 (307)
T 2eva_A          233 IESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFP  266 (307)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhcc
Confidence            3456678999999999999999999999986553

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=86.57  E-value=0.46  Score=47.46  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=28.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||+|.+|+.+|+.+++.
T Consensus       344 l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~  375 (377)
T 3cbl_A          344 VFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR  375 (377)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence            44566789999999999999999999999864

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=86.49  E-value=0.44  Score=46.45  Aligned_cols=31  Identities=16%  Similarity=0.262  Sum_probs=27.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +..+...|.+.+|.+||+|.+|+.+|+.+..
T Consensus       248 ~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          248 VYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             HHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            5577788999999999999999999988754

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=86.04  E-value=0.51  Score=44.22  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=28.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||++.+++.+|+.+++.
T Consensus       234 l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          234 VYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            44667789999999999999999999998763

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=85.95  E-value=0.48  Score=46.11  Aligned_cols=32  Identities=19%  Similarity=0.129  Sum_probs=28.2

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||+|.+|+.+|+.+...
T Consensus       283 l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~  314 (325)
T 3kul_A          283 LHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS  314 (325)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence            45677889999999999999999999998754

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=85.92  E-value=0.52  Score=44.28  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=27.7

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||++.++++.|+.+++.
T Consensus       236 ~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          236 VYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence            44566789999999999999999999998764

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=84.60  E-value=0.71  Score=44.46  Aligned_cols=33  Identities=12%  Similarity=0.107  Sum_probs=28.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF  654 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~  654 (659)
                      +.++...|.+.+|.+||++.+|+.+|+.++...
T Consensus       267 l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~  299 (310)
T 2wqm_A          267 LRQLVNMCINPDPEKRPDVTYVYDVAKRMHACT  299 (310)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhh
Confidence            445667799999999999999999999998654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=84.42  E-value=0.69  Score=43.67  Aligned_cols=32  Identities=13%  Similarity=0.100  Sum_probs=27.6

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++-..|.+.+|.+||++.+++.+|+.++..
T Consensus       243 l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          243 VYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence            34555679999999999999999999999864

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=84.23  E-value=0.68  Score=45.69  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=27.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||+|.+|+..|+.+.++
T Consensus       325 l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          325 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence            34566789999999999999999999988754

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=83.68  E-value=0.42  Score=44.89  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++-..|.+.+|.+||++.+|++.|+.+++
T Consensus       234 l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (268)
T 3sxs_A          234 IYQIMYSCWHELPEKRPTFQQLLSSIEPLRE  264 (268)
T ss_dssp             HHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence            4466678999999999999999999998865

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=83.34  E-value=0.87  Score=45.46  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=28.2

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF  654 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~  654 (659)
                      +.++...|.+.+|.+||+|.+|++.|+++....
T Consensus       322 l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  354 (382)
T 3tt0_A          322 LYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALT  354 (382)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence            446667899999999999999999999987543

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=83.34  E-value=0.85  Score=45.40  Aligned_cols=35  Identities=14%  Similarity=0.315  Sum_probs=29.7

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhc
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLG  656 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~  656 (659)
                      +.++-..|.+.+|.+||++.+|++.|+.+...+.+
T Consensus       325 l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~  359 (373)
T 3c1x_A          325 LYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG  359 (373)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence            44566789999999999999999999999876554

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=83.01  E-value=0.77  Score=44.72  Aligned_cols=33  Identities=18%  Similarity=0.142  Sum_probs=28.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF  654 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~  654 (659)
                      +..+...|.+.+|.+||++.+|+..|+.+....
T Consensus       296 l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~  328 (333)
T 2i1m_A          296 IYSIMQACWALEPTHRPTFQQICSFLQEQAQED  328 (333)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccChhhCcCHHHHHHHHHHHHHhh
Confidence            445667899999999999999999999887543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=82.98  E-value=0.63  Score=43.64  Aligned_cols=31  Identities=23%  Similarity=0.331  Sum_probs=26.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||++.+|++.|+.+++
T Consensus       240 ~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          240 VSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            3455567999999999999999999998864

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=82.64  E-value=0.86  Score=43.40  Aligned_cols=32  Identities=6%  Similarity=-0.083  Sum_probs=27.9

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||++.+|++.|+.+...
T Consensus       250 l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  281 (296)
T 3uzp_A          250 FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  281 (296)
T ss_dssp             HHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHh
Confidence            45667789999999999999999999988754

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=82.53  E-value=1  Score=43.85  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=27.7

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||+|.+|+.+|+.+...
T Consensus       279 l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  310 (333)
T 1mqb_A          279 IYQLMMQCWQQERARRPKFADIVSILDKLIRA  310 (333)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            45677789999999999999999999987653

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=82.51  E-value=0.97  Score=42.70  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=27.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++-..|.+.+|.+||++.+|+..|+.+.+
T Consensus       243 l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          243 LYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence            4456678999999999999999999998865

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=82.43  E-value=0.94  Score=42.71  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=28.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF  654 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~  654 (659)
                      +.++...|.+.+|.+||+|.+++.+|+.+....
T Consensus       239 l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  271 (279)
T 1qpc_A          239 LYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT  271 (279)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence            446667899999999999999999999886543

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=82.35  E-value=0.65  Score=43.63  Aligned_cols=29  Identities=17%  Similarity=0.253  Sum_probs=24.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||++.+|++.|+.+
T Consensus       243 ~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          243 FAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             HHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            45666789999999999999999999753

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=82.32  E-value=0.72  Score=44.84  Aligned_cols=31  Identities=19%  Similarity=0.192  Sum_probs=25.9

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||+|.+|+++|+.+..
T Consensus       273 l~~li~~~l~~dP~~Rps~~ell~~L~~~~~  303 (327)
T 3lxl_A          273 VHELMKLCWAPSPQDRPSFSALGPQLDMLWS  303 (327)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            4566778999999999999999999988754

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=82.00  E-value=0.67  Score=45.35  Aligned_cols=34  Identities=21%  Similarity=0.131  Sum_probs=27.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFL  655 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~  655 (659)
                      +.++...|.+.+|.+||++.+|+.+|+.+.+.+.
T Consensus       305 l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          305 LYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence            4566678999999999999999999999876543

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=81.37  E-value=0.89  Score=43.22  Aligned_cols=30  Identities=20%  Similarity=0.180  Sum_probs=26.2

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      +.++...|.+.+|.+||++.+|+++|+.+.
T Consensus       258 l~~li~~~l~~~p~~Rps~~ell~~L~~l~  287 (289)
T 3og7_A          258 MKRLMAECLKKKRDERPSFPRILAEIEELA  287 (289)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence            456667899999999999999999998764

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=81.33  E-value=0.99  Score=43.16  Aligned_cols=30  Identities=10%  Similarity=0.142  Sum_probs=26.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      +.++...|.+.+|.+||++.+|+++|+.+.
T Consensus       272 l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          272 VYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             HHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            456777899999999999999999998764

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=81.30  E-value=1  Score=42.81  Aligned_cols=32  Identities=6%  Similarity=-0.083  Sum_probs=27.6

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||++.+|+++|+.+.+.
T Consensus       250 l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~  281 (296)
T 4hgt_A          250 FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  281 (296)
T ss_dssp             HHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence            45666789999999999999999999988754

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=80.94  E-value=1.1  Score=43.00  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=28.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESF  654 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~  654 (659)
                      +.++...|.+.+|.+||++.+++..|+.+.+..
T Consensus       278 l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l  310 (313)
T 3brb_A          278 LYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL  310 (313)
T ss_dssp             HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence            456667899999999999999999999987643

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=80.82  E-value=1.2  Score=42.02  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=27.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||++.+|+..|+.+.+.
T Consensus       246 l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  277 (281)
T 1mp8_A          246 LYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  277 (281)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            34566789999999999999999999988653

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=80.74  E-value=1.3  Score=41.89  Aligned_cols=31  Identities=13%  Similarity=0.183  Sum_probs=27.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||++.++++.|..+.+
T Consensus       250 l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          250 VYTIMYSCWHEKADERPTFKILLSNILDVMD  280 (283)
T ss_dssp             HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence            4566778999999999999999999988764

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=80.39  E-value=1.2  Score=42.90  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=27.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||++.+|+..|+.+.++
T Consensus       280 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          280 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence            34556779999999999999999999988754

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=80.36  E-value=1.3  Score=42.12  Aligned_cols=31  Identities=13%  Similarity=0.018  Sum_probs=26.7

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +..+...|.+.+|.+||++.+|+.+|+.+-.
T Consensus       249 l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  279 (291)
T 1xbb_A          249 MYDLMNLCWTYDVENRPGFAAVELRLRNYYY  279 (291)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            4566778999999999999999999987744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	659
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-23
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	8e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  100 bits (249), Expect = 2e-23
 Identities = 76/387 (19%), Positives = 137/387 (35%), Gaps = 30/387 (7%)

Query: 78  LRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGG 137
           L   +   +G+   +    ++  ++  +  +            +D    L NL  +    
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSN 75

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLD 197
           N      P  L N + L  + + +NQ+     +   +      L   Q        N  +
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 198 FVTFLTNCSSLKVISLYANQFGGELPHSIAN------LSSTMTDFRIGANQISGTIPPGI 251
                 + +++  IS  +     +             L++  T  R+  +    +    +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 252 RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311
             L NL +L    N++    P  I    NL +LSL  N L+     +L +LT L +L L+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQ 371
            N +    P  L     L       N+++   P   L+  T         N         
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL-----ELNENQLEDISP 302

Query: 372 VGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNV 431
           + NLKNL  L +  N  S + P  +S+   L+ L  + N        SL++L +I   + 
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 432 SSNNLSGLIPEFLKNLSFMEFLDLSYN 458
             N +S L P  L NL+ +  L L+  
Sbjct: 359 GHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.8 bits (224), Expect = 3e-20
 Identities = 78/406 (19%), Positives = 140/406 (34%), Gaps = 42/406 (10%)

Query: 29  SLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGE 88
           +L       +    +T  +     +L  +         +  K    +  L NL  +N   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75

Query: 89  NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSL 148
           N+ + + P  + N++ L  I +  N+                                + 
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQI-------------------ADITPLANLTNLTG 114

Query: 149 SNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSL 208
               N +I D+   +    ++    S   +S ++       +   +  + VT L   ++L
Sbjct: 115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 174

Query: 209 KVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLH 268
             +             S+    + +       NQIS   P GI    NL  L++  N+L 
Sbjct: 175 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLK 232

Query: 269 GTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQI 328
                T+  L NL  L L NN +    P  L  LTKL EL L  N +    P  L     
Sbjct: 233 D--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 286

Query: 329 LRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF 388
           L     + N+L    P   L   T    L L  N ++   P+   +L  L +L  + N+ 
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTY---LTLYFNNISDISPV--SSLTKLQRLFFANNKV 341

Query: 389 SGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN 434
           S     +L+   ++ +L+   N    + P  L++L  I +  ++  
Sbjct: 342 SD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 4e-17
 Identities = 69/348 (19%), Positives = 120/348 (34%), Gaps = 37/348 (10%)

Query: 2   NLSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFY 61
            +   +NL ++  S N+L    P  + +L  L  + ++ N +    P            +
Sbjct: 61  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

Query: 62  IIGNSLGGKIPT------------TLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIY 109
               +    +              T+  +  L  L   +    G     +  +++L  + 
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 110 LPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVS 169
                 +    + +   L NL++L    N      P      +NL+ L L  NQLK   +
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGT 236

Query: 170 IDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANL 229
              +SL NL+ L+L  N +          +  L+  + L  + L ANQ     P +    
Sbjct: 237 --LASLTNLTDLDLANNQISN--------LAPLSGLTKLTELKLGANQISNISPLAGLTA 286

Query: 230 SSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNN 289
            + +                 I NL NL  LT+  N +    P  +  L  LQ+L   NN
Sbjct: 287 LTNLELNENQLED-----ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 339

Query: 290 SLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRN 337
            +     SSL NLT +  L   +N +    P  L N   +     +  
Sbjct: 340 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 1e-12
 Identities = 80/377 (21%), Positives = 131/377 (34%), Gaps = 56/377 (14%)

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLE 184
            L       +G  N   ++  S ++   +  L      +K   SID    L NL+ +N  
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 74

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
            N L          +T L N + L  I +  NQ     P +     + +T F      I 
Sbjct: 75  NNQLTD--------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 245 GTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
                   N +      +  N +       I  L  L  L   +   Q +    L NLT 
Sbjct: 127 PLKNLTNLNRLE-----LSSNTIS-----DISALSGLTSLQQLSFGNQVTDLKPLANLTT 176

Query: 305 LVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLL 364
           L  L +S N +      +      L    A+ N+++   P  +L+       L L+ N L
Sbjct: 177 LERLDISSNKVSDISVLA--KLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQL 231

Query: 365 NGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSS-- 422
                  + +L NL  LD++ NQ S + P  LS    L  L +  N    I PL+  +  
Sbjct: 232 KD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTAL 287

Query: 423 ------------------LKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEV 464
                             LK++    +  NN+S + P  + +L+ ++ L  + N     V
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-V 344

Query: 465 PKKGVFSNKTKISLQGN 481
                 +N   +S   N
Sbjct: 345 SSLANLTNINWLSAGHN 361

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.6 bits (213), Expect = 3e-19
 Identities = 43/236 (18%), Positives = 95/236 (40%), Gaps = 6/236 (2%)

Query: 227 ANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSL 286
            +L        +  N+I+       +NL NL  L +  NK+    P     L  L++L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 287 YNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQ 346
             N L+         L +L         ++ ++ + L    ++ +   +  K +G     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGA 145

Query: 347 LLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLN 406
              +  L+    +++  +     +  G   +L +L + GN+ + V   +L    +L  L 
Sbjct: 146 FQGMKKLSYI-RIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 407 ISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG 462
           +S N    +   SL++   ++E ++++N L   +P  L +  +++ + L  N+   
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.5 bits (205), Expect = 3e-18
 Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 7/236 (2%)

Query: 246 TIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKL 305
            +P  +    +   L ++ NK+          LKNL  L L NN +    P +   L KL
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 306 VELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLN 365
             L LS N L+          Q LR+      K+  ++ + L  +    + L  +    +
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI--VVELGTNPLKSS 139

Query: 366 GSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKS 425
           G        +K L  + I+    + +         SL  L++  N    +   SL  L +
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNN 196

Query: 426 IKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGN 481
           + +  +S N++S +    L N   +  L L+ N                 + L  N
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.3 bits (194), Expect = 8e-17
 Identities = 55/278 (19%), Positives = 95/278 (34%), Gaps = 22/278 (7%)

Query: 118 SLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKN 177
            +P D+    P+   L +  N           N  NL  L L +N++       F+ L  
Sbjct: 24  KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 178 LSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFR 237
           L  L L +N L          +  L      ++  +  + F G     +  L +      
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQEL-RVHENEITKVRKSVFNGLNQMIVVELGTNP---- 135

Query: 238 IGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS 297
               + SG      + +  L  + +    +  TIP  +    +L +L L  N +     +
Sbjct: 136 ---LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAA 189

Query: 298 SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSL 357
           SL  L  L +L LS+N++      SL N   LR  + + NKL    P  L     +   +
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQ-VV 247

Query: 358 DLSNNLLNG------SLPLQVGNLKNLVKLDISGNQFS 389
            L NN ++         P       +   + +  N   
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 6e-13
 Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 28/238 (11%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
                NL  L +  NK+    P     L+ L+ L +  N L          L  L+V   
Sbjct: 51  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 110

Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD 122
               +   +   L  +  + +L     + SG+   +   +  L +I +     + ++P  
Sbjct: 111 EITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 168

Query: 123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG---------------- 166
           +    P+L  L + GN        SL   +NL  L L+ N +                  
Sbjct: 169 L---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 167 -------KVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQ 217
                  KV    +  K +  + L  NN+    +ND     + T  +S   +SL++N 
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 1e-18
 Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 9/266 (3%)

Query: 234 TDFRIGANQISG--TIPPGIRNLVNLIALTMEIN-KLHGTIPDTIGELKNLQQLSLYNNS 290
            +  +    +     IP  + NL  L  L +     L G IP  I +L  L  L + + +
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 291 LQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSI 350
           + G+IP  L  +  LV L  SYN L G +P S+ +   L       N+++GA+P    S 
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 351 TTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN 410
           + L  S+ +S N L G +P    NL                    L              
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDL--SRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVF 470
                    +   K++   ++ +N + G +P+ L  L F+  L++S+N+  GE+P+ G  
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 471 SNKTKISLQGNVKLCGGIDELHLPSC 496
                 +   N  LCG      LP+C
Sbjct: 291 QRFDVSAYANNKCLCGS----PLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 1e-15
 Identities = 62/284 (21%), Positives = 102/284 (35%), Gaps = 9/284 (3%)

Query: 137 GNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDL 196
              + G + ++ +    +  LDL+   L     I  SSL NL    L    +G       
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLP--YLNFLYIGGINNLVG 91

Query: 197 DFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVN 256
                +   + L  + +      G       +   T+       N +SGT+PP I +L N
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 257 LIALTMEINKLHGTIPDTIGELKNLQQ-LSLYNNSLQGSIPSSLGNLTKLVELPLSYNNL 315
           L+ +T + N++ G IPD+ G    L   +++  N L G IP +  NL             
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 316 QGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNL 375
                    +    ++  A  +            ++     LDL NN + G+LP  +  L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVG---LSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 376 KNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLS 419
           K L  L++S N   G IP         +    + N      PL 
Sbjct: 268 KFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.2 bits (165), Expect = 5e-13
 Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 15/273 (5%)

Query: 28  GSLLNLQTLAIDFNYLTG--QLPDFVGNLSALKVFYIIGN-SLGGKIPTTLGLLRNLVDL 84
                +  L +    L     +P  + NL  L   YI G  +L G IP  +  L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 85  NVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSI 144
            +     SG  P  +  I +L  +   +N  SG+LP  I  +LPNL  +   GN   G+I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAI 165

Query: 145 PNSLSNASNLEI-LDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLT 203
           P+S  + S L   + ++ N+L GK+   F++L             G  +           
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 204 NCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTME 263
              +   ++    + G     +  +L +         N+I GT+P G+  L  L +L + 
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRN---------NRIYGTLPQGLTQLKFLHSLNVS 276

Query: 264 INKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
            N L G IP   G L+     +  NN      P
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 6   YSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGN 65
             NL  L +  N++ G +P+ +  L  L +L + FN L G++P   GNL    V     N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

Query: 66  SL--GGKIP 72
               G  +P
Sbjct: 302 KCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 59  VFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGS 118
              +  N + G +P  L  L+ L  LNV  N   G  P    N+   +      N+    
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

Query: 119 LPL 121
            PL
Sbjct: 307 SPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 38  IDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPR 97
           +  N + G LP  +  L  L    +  N+L G+IP   G L+         N+     P 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL 309

Query: 98  SIC 100
             C
Sbjct: 310 PAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 2/141 (1%)

Query: 297 SSLGNLTKLVELPLSYNNLQGN--IPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLT 354
            +     ++  L LS  NL     IPSSL N   L                  ++  T  
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 355 LSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414
             L +++  ++G++P  +  +K LV LD S N  SG +P ++S+  +L  +    N   G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 415 IIPLSLSSLKSIKEFNVSSNN 435
            IP S  S   +      S N
Sbjct: 164 AIPDSYGSFSKLFTSMTISRN 184

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 1e-17
 Identities = 51/272 (18%), Positives = 89/272 (32%), Gaps = 13/272 (4%)

Query: 143 SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFL 202
           ++P  +   +  + + L  N++    +  F + +NL+ L L  N L    A     +  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 203 TNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTM 262
                         Q     P +   L   +    +    +    P   R L  L  L +
Sbjct: 83  EQL-----DLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 263 EINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSS 322
           + N L     DT  +L NL  L L+ N +      +   L  L  L L  N +    P +
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 323 LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD 382
             +   L       N L+      L  +  L   L L++N        +      L K  
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQ-YLRLNDNPWVCDCRAR-PLWAWLQKFR 254

Query: 383 ISGNQFSGVIPVTLSACVSLEYLNISRNFFHG 414
            S ++    +P  L+     +   ++ N   G
Sbjct: 255 GSSSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 3e-17
 Identities = 50/287 (17%), Positives = 88/287 (30%), Gaps = 35/287 (12%)

Query: 176 KNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTD 235
                + L  N +    A           C +L ++ L++N        +   L+     
Sbjct: 32  AASQRIFLHGNRISHVPAASFR------ACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85

Query: 236 FRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSI 295
                 Q+    P     L  L  L ++   L    P     L  LQ L L +N+LQ   
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 296 PSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTL 355
             +  +L  L  L L  N +      +      L                          
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL----------------------- 182

Query: 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI 415
              L  N +    P    +L  L+ L +  N  S +    L+   +L+YL ++ N +   
Sbjct: 183 --LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 416 IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEG 462
                     +++F  SS+ +   +P+ L          L+ N  +G
Sbjct: 241 CRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 53/261 (20%), Positives = 89/261 (34%), Gaps = 11/261 (4%)

Query: 57  LKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFS 116
            +  ++ GN +      +    RNL  L +  N  + +   +   ++ LE + L  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 117 GSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLK 176
            S+       L  L  L +         P      + L+ L L  N L+      F  L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 177 NLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDF 236
           NL+ L L  N +                  SL  + L+ N+     PH+  +L   +   
Sbjct: 154 NLTHLFLHGNRISSVPER------AFRGLHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTL 206

Query: 237 RIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
            + AN +S      +  L  L  L +  N               LQ+    ++ +  S+P
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLP 265

Query: 297 SSLGNLTKLVELPLSYNNLQG 317
             L     L    L+ N+LQG
Sbjct: 266 QRLAGR-DLKR--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 3/217 (1%)

Query: 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQIL 329
            +P  I      Q++ L+ N +     +S      L  L L  N L     ++     +L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 330 RMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS 389
              + S N    ++            +L L    L    P     L  L  L +  N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 390 GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF 449
            +   T     +L +L +  N    +   +   L S+    +  N ++ + P   ++L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 450 MEFLDLSYNHFEG-EVPKKGVFSNKTKISLQGNVKLC 485
           +  L L  N+                 + L  N  +C
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 9e-14
 Identities = 55/291 (18%), Positives = 93/291 (31%), Gaps = 15/291 (5%)

Query: 100 CNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDL 159
           C          P      ++P+ I       + + + GN        S     NL IL L
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 160 TSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG 219
            SN L    +  F+ L  L  L+L  N                     L  + L      
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQ-----LRSVDPATFHGLGRLHTLHLD-RCGL 117

Query: 220 GELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELK 279
            EL   +    + +    +  N +        R+L NL  L +  N++          L 
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 280 NLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKL 339
           +L +L L+ N +    P +  +L +L+ L L  NNL      +L   + L+    + N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 340 TGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG 390
                 +   +         S++ +  SLP     L       ++ N   G
Sbjct: 238 VC--DCRARPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 10/249 (4%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           +    + +  N++         +  NL  L +  N L          L+ L+   +  N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 67  LGGKI-PTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125
               + P T   L  L  L++       + P     +++L+++YL  N        D   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFR 150

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQ 185
           +L NL  L + GN        +     +L+ L L  N++       F  L  L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 186 NNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISG 245
           NNL             L    +L+ + L  N +  +       L + +  FR  ++++  
Sbjct: 211 NNLSA------LPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPC 262

Query: 246 TIPPGIRNL 254
           ++P  +   
Sbjct: 263 SLPQRLAGR 271

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 29/164 (17%)

Query: 3   LSRYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYI 62
                NL  L +  N++          L +L  L +  N +    P    +L  L   Y+
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 63  IGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLD 122
             N+L       L  LR L  L + +N +        C    L                 
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVC-----DCRARPL----------------- 246

Query: 123 IAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG 166
                  L+      +    S+P  L   +  ++  L +N L+G
Sbjct: 247 ----WAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 47/212 (22%), Positives = 81/212 (38%), Gaps = 7/212 (3%)

Query: 274 TIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFN 333
            + ++ +  +++    +L  ++P  L   T    L LS N L     ++L     L   N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 334 ASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIP 393
             R +LT       L +    L     ++    SLPL    L  L  LD+S N+ + +  
Sbjct: 62  LDRAELTKLQVDGTLPV----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 394 VTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFL 453
             L     L+ L +  N    + P  L+    +++ ++++NNL+ L    L  L  ++ L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 454 DLSYNHFEGEVPKKGVFSNKTKISLQGNVKLC 485
            L  N                   L GN  LC
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 38/219 (17%), Positives = 67/219 (30%), Gaps = 15/219 (6%)

Query: 98  SICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEIL 157
            +  ++S   +       + +LP D+     +   L +  N  +     +L   + L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 158 DLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQ 217
           +L   +          +L  L  L+L  N L                  S   ++     
Sbjct: 61  NLDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT----- 113

Query: 218 FGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGE 277
               LP         + +  +  N++    P  +     L  L++  N L       +  
Sbjct: 114 ---SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 278 LKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQ 316
           L+NL  L L  NSL  +IP        L    L  N   
Sbjct: 171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 7/191 (3%)

Query: 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQIL 329
            +P  +   K+   L L  N L     ++L   T+L +L L    L         +  + 
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----DGTLP 77

Query: 330 RMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFS 389
            +     +         L         LD+S N L       +  L  L +L + GN+  
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 390 GVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSF 449
            + P  L+    LE L+++ N    +    L+ L+++    +  N+L   IP+       
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHL 196

Query: 450 MEFLDLSYNHF 460
           + F  L  N +
Sbjct: 197 LPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 5/182 (2%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
            +   L +S+N L       +     L  L  + +          G L  L    +  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQL--NLDRAELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
           L          L  L  L+V  NR + +   ++  +  L+ +YL  N      P  +   
Sbjct: 89  LQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTP 146

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQN 186
            P L+ L++  NN        L+   NL+ L L  N L   +   F     L +  L  N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

Query: 187 NL 188
             
Sbjct: 206 PW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 26/217 (11%), Positives = 47/217 (21%), Gaps = 36/217 (16%)

Query: 76  GLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAI 135
            L ++   L++ EN        ++   + L  + L                         
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL------------------------- 62

Query: 136 GGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTAND 195
                     +            L              SL  L         L +     
Sbjct: 63  ----------DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 196 LDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLV 255
                                     LP  +   +  +    +  N ++      +  L 
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQ 292
           NL  L ++ N L+ TIP        L    L+ N   
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 4e-10
 Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 21/217 (9%)

Query: 253 NLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSY 312
            L N I +    + +  T+  T  +L  +  LS +   +       +  L  L+ L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 313 NNLQGNIPSS------LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG 366
           N +    P                + N S      ++    L+ T +T    L+      
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 367 SLPLQVGNLKNLVKLDI-------SGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLS 419
            L L +  + N+  L         S           L+    L  L    N    I PL+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 420 LSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLS 456
             SL ++ E ++ +N +S + P  L N S +  + L+
Sbjct: 193 --SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 17/218 (7%)

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLE 184
            L N   +A G +N   ++  + ++   +  L      +    +I+    L NL  L L+
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
            N +                 S   + ++ A      +       +       +      
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 245 GTIPPGIRNLVNLIALTMEINKLHG-------TIPDTIGELKNLQQLSLYNNSLQGSIPS 297
             +   +  + N+  L    N  +        +    +  L  L  L   +N +    P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 298 SLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNAS 335
            L +L  L+E+ L  N +    P  L N   L +   +
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 27/238 (11%)

Query: 150 NASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLK 209
             +N   +    + +   V+   + L  ++ L+     +       ++ V +L N   L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-----TTIEGVQYLNN---LI 66

Query: 210 VISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHG 269
            + L  NQ     P       + +         +S                T+++     
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIK-------TLDLTSTQI 119

Query: 270 TIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQIL 329
           T    +  L NLQ L L  N +    P +     + +    S  N Q +  + L N   L
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL----SIGNAQVSDLTPLANLSKL 175

Query: 330 RMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQ 387
               A  NK++   P  L S+  L   + L NN ++   PL   N  NL  + ++ NQ
Sbjct: 176 TTLKADDNKISDISP--LASLPNLI-EVHLKNNQISDVSPL--ANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 32/218 (14%), Positives = 71/218 (32%), Gaps = 16/218 (7%)

Query: 78  LRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGG 137
           L N + +  G++  +    ++  ++  +  +       +    +     L NL  L +  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQ---YLNNLIGLELKD 72

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLN-------LEQNNLGM 190
           N      P           L     +    ++   S                L   +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG 250
               DL+ +T ++  + L  +   +         +     S +T  +   N+IS   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYN 288
           + +L NLI + ++ N++    P  +    NL  ++L N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 5e-10
 Identities = 40/273 (14%), Positives = 87/273 (31%), Gaps = 8/273 (2%)

Query: 64  GNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDI 123
           G +L   +   L L + ++      +               ++ + L  +    S    I
Sbjct: 9   GKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVSTLHGI 66

Query: 124 AVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLT--SNQLKGKVSIDFSSLKNLSWL 181
                 L+ L++ G      I N+L+  SNL  L+L+  S   +  +    SS   L  L
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126

Query: 182 NLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGAN 241
           NL            +         + L +     N    +L   +    + +      + 
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186

Query: 242 QISGTIPPGIRNLVNLIALTME-INKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLG 300
            +          L  L  L++     +       +GE+  L+ L ++     G++     
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE 246

Query: 301 NLTKLVELPLSYNNLQGNIPSSLGNCQILRMFN 333
            L  L    ++ ++       ++GN +   ++ 
Sbjct: 247 ALPHLQ---INCSHFTTIARPTIGNKKNQEIWG 276

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 6e-09
 Identities = 39/295 (13%), Positives = 94/295 (31%), Gaps = 30/295 (10%)

Query: 133 LAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGT 192
           L + G N    +   L  +  +       + +   ++  FS  + +  ++L  + +    
Sbjct: 5   LDLTGKNLHPDVTGRLL-SQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI---- 58

Query: 193 ANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSS-TMTDFRIGANQISGTIPPGI 251
                    L+ CS L+ +SL   +    + +++A  S+    +    +      +   +
Sbjct: 59  -EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 252 RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS 311
            +   L  L +            +      + ++  N S                     
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG------------------YR 159

Query: 312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSN-NLLNGSLPL 370
            N  + ++ + +  C  L   + S + +      Q          L LS    +     L
Sbjct: 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 219

Query: 371 QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKS 425
           ++G +  L  L + G    G + +   A     +L I+ + F  I   ++ + K+
Sbjct: 220 ELGEIPTLKTLQVFGIVPDGTLQLLKEAL---PHLQINCSHFTTIARPTIGNKKN 271

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 33/249 (13%), Positives = 73/249 (29%), Gaps = 13/249 (5%)

Query: 207 SLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINK 266
            +       +     L    +       D    +     T+   +     L  L++E  +
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 267 LHGTIPDTIGELKNLQQLSLYNNSLQGSIPS--------SLGNLTKLVELPLSYNNLQGN 318
           L   I +T+ +  NL +L+L   S                L  L        +  ++Q  
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 319 IPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNL 378
           +         L +    +N     L   +     L       + +L      +   L  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 379 VKLDISG-NQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS 437
             L +S          + L    +L+ L +      G + L   +L  ++   ++ ++ +
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFT 259

Query: 438 GLIPEFLKN 446
            +    + N
Sbjct: 260 TIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 8e-06
 Identities = 16/106 (15%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGI 415
           +LDL+   L+  +  ++ +   ++      +     +    S    ++++++S +     
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVS 61

Query: 416 -IPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHF 460
            +   LS    ++  ++    LS  I   L   S +  L+LS    
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 4e-08
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG 341
           + L L +  L  ++   L  L  +  L LS+N L+   P+ L   + L +  AS N L  
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 342 ALPHQLLSITTLTLSLDLSNNLLNG-SLPLQVGNLKNLVKLDISGNQFSGV 391
                          L L NN L   +    + +   LV L++ GN     
Sbjct: 58  VDGVA---NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 357 LDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGII 416
           L L++  L  ++   +  L  +  LD+S N+   + P  L+A   LE L  S N    + 
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 417 PLSLSSLKSIKEFNVSSNNLSGL-IPEFLKNLSFMEFLDLSYNHFEGE 463
            ++      ++E  + +N L      + L +   +  L+L  N    E
Sbjct: 60  GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 12  LRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKI 71
           L ++   L   +   +  LL +  L +  N L    P     L  L+V     N+L    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVD 59

Query: 72  PTTLGLLRNLVDLNVGENRFSGM-FPRSICNISSLEWIYLPFNRFSG--SLPLDIAVNLP 128
                    L +L +  NR       + + +   L  + L  N       +   +A  LP
Sbjct: 60  GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 129 NLKAL 133
           ++ ++
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 58  KVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSG 117
           +V ++    L   +   L  L  +  L++  NR   + P     +++L  + +     + 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 118 SLPLDIAVNLPNLKALAIGGNNFFG-SIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLK 176
              +D   NLP L+ L +  N     +    L +   L +L+L  N L  +  I     +
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 177 NLSWLN 182
            L  ++
Sbjct: 115 MLPSVS 120

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 262 MEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS 321
             +N     I        +L++L++ NN L   +P+    L +L+    S+N+L   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLA-EVPE 321

Query: 322 SLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356
              N + L   +   N L    P    S+  L ++
Sbjct: 322 LPQNLKQL---HVEYNPLRE-FPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 8e-06
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 89  NRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSL 148
           N  S           SLE + +  N+       ++    P L+ L    N+    +P   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL-AEVPELP 323

Query: 149 SNASNLEILDLTSNQLKGKVSIDFSSLKNL 178
            N   L+ L +  N L+    I   S+++L
Sbjct: 324 QN---LKQLHVEYNPLREFPDI-PESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 53/319 (16%), Positives = 100/319 (31%), Gaps = 27/319 (8%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
               EL ++   L   +PE      +L++L    N LT +LP+   +L +L V      +
Sbjct: 38  RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSIC--NISSLEWIYLPFNRFSGSLPLDIA 124
           L    P    L  +   L       +  F + I   N S  +   LP +    +   +  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 125 VNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSW-LNL 183
             LP L+ L      +  +          L +  + +     +   +  +L  L+     
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 184 EQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQI 243
                 +           + +     +  L  +    ++  +I +  S +       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 244 SGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELK-----------------NLQQLSL 286
           S  I        +L  L +  NKL   +P     L+                 NL+QL +
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQNLKQLHV 331

Query: 287 YNNSLQGSIPSSLGNLTKL 305
             N L+   P    ++  L
Sbjct: 332 EYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 325 NCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDIS 384
               L       N  +  +        +L   L++SNN L   LP        L +L  S
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLE-ELNVSNNKLI-ELP---ALPPRLERLIAS 312

Query: 385 GNQFSGVIPVTLSACVSLEYLNISRNFFHGI--IPLSLSSLK 424
            N  +  +P       +L+ L++  N       IP S+  L+
Sbjct: 313 FNHLAE-VPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 309 PLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSL 368
               N     I S       L   N S NKL   LP     +  L      S N L   +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL----IASFNHLA-EV 319

Query: 369 PLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNIS 408
           P      +NL +L +  N      P       S+E L ++
Sbjct: 320 P---ELPQNLKQLHVEYNPLRE-FPDIPE---SVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 386 NQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLK 445
           N  S  I        SLE LN+S N     +P     L+ +     S N+L+  +PE  +
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLAE-VPELPQ 324

Query: 446 NLSFMEFLDLSYNHFEG 462
           NL   + L + YN    
Sbjct: 325 NL---KQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 279 KNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNK 338
           +   +L L N  L  S+P    +L  LV    S N+L   +P    + + L + N +   
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 339 LTGALPH 345
           L+   P 
Sbjct: 93  LSDLPPL 99

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 60  FYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSL 119
                N+   +I +   L  +L +LNV  N+     P        LE +   FN  +   
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA--- 317

Query: 120 PLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEI 156
             ++     NLK L +  N      P+   +  +L +
Sbjct: 318 --EVPELPQNLKQLHVEYNPL-REFPDIPESVEDLRM 351

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 17/204 (8%)

Query: 253 NLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSY 312
                I   ++   +   +  T  EL ++ Q+   N+ ++      +  L  + +L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 313 NNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV 372
           N L    P  L N + L       NK+      + L             + +NG + L  
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 373 GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVS 432
                L    I+                 L+ L++  N    I+P  L+ L  ++   +S
Sbjct: 136 LESLYLGNNKITDITVLSR-------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186

Query: 433 SNNLSGLIPEFLKNLSFMEFLDLS 456
            N++S L    L  L  ++ L+L 
Sbjct: 187 KNHISDL--RALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 15/177 (8%)

Query: 7   SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNS 66
           +++ ++  + + ++      I  L N+  L ++ N LT         L+ LK    +   
Sbjct: 46  NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDI-----KPLANLKNLGWLFLD 98

Query: 67  LGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVN 126
                  +           +            I  +  L  +   +   +    + +   
Sbjct: 99  ENKVKDLS----SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSR 154

Query: 127 LPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNL 183
           L  L  L++  N     +P  L+  + L+ L L+ N +    +   + LKNL  L L
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 4e-07
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 153 NLEILDLTSNQLKGK-VSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVI 211
           +++ LD+   +L     +     L+    + L+   L      D+   + L    +L  +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI--SSALRVNPALAEL 60

Query: 212 SLYANQFGGELPHSIANL 229
           +L +N+ G    H +   
Sbjct: 61  NLRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 4e-06
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 148 LSNASNLEILDLTSNQLKGKVSIDFSS----LKNLSWLNLEQNNLGMGTANDLDFVTFLT 203
               S L +L L    +        ++      +L  L+L  N LG      L   +   
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL-VESVRQ 423

Query: 204 NCSSLKVISLYANQFGGELPHSIANLSSTMTDFRI 238
               L+ + LY   +  E+   +  L       R+
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 21/107 (19%)

Query: 255 VNLIALTMEINKL-HGTIPDTIGELKNLQQLSLYNNSLQG----SIPSSLGNLTKLVELP 309
           +++ +L ++  +L      + +  L+  Q + L +  L       I S+L     L EL 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 310 LSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356
           L  N L       +                   L      I  L+L 
Sbjct: 62  LRSNELGDVGVHCVLQ----------------GLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 5/88 (5%)

Query: 356 SLDLS-NNLLNGSLPLQVGNLKNLVKLDISGNQFSGV----IPVTLSACVSLEYLNISRN 410
           SLD+    L +      +  L+    + +     +      I   L    +L  LN+  N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 411 FFHGIIPLSLSSLKSIKEFNVSSNNLSG 438
               +    +          +   +L  
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 10/94 (10%)

Query: 377 NLVKLDISGNQFSGV-IPVTLSACVSLEYLNISRNFFHGI----IPLSLSSLKSIKEFNV 431
           ++  LDI   + S       L      + + +            I  +L    ++ E N+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 432 SSNNLSGLIPEFL-----KNLSFMEFLDLSYNHF 460
            SN L  +    +          ++ L L     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 356 SLDLSNNLLNG----SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV-----SLEYLN 406
            L L++  ++     SL   +    +L +LD+S N       + L   V      LE L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 407 ISRNFFHGIIPLSLSSLK 424
           +   ++   +   L +L+
Sbjct: 433 LYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 399 CVSLEYLNISRNFFHGI----IPLSLSSLKSIKEFNVSSNNLSGLIPEFL-----KNLSF 449
              L  L ++           +  +L +  S++E ++S+N L       L     +    
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 450 MEFLDLSYNHFEGEVPK 466
           +E L L   ++  E+  
Sbjct: 428 LEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 104 SLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNF----FGSIPNSLSNASNLEILDL 159
            ++ + +     S +   ++   L   + + +            I ++L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 160 TSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM 190
            SN+L                  +++ +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 400 VSLEYLNISRNFF-HGIIPLSLSSLKSIKEFNVSSNNLSG----LIPEFLKNLSFMEFLD 454
           + ++ L+I             L  L+  +   +    L+      I   L+    +  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 455 LSYNHFEGEVPK---KGVFSNKTKI 476
           L  N           +G+ +   KI
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 329 LRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNG----SLPLQVGNLKNLVKLDIS 384
           ++  +    +L+ A   +LL +      + L +  L       +   +     L +L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 385 GNQFSGVIPVTL-----SACVSLEYLNISRNFFH 413
            N+   V    +     +    ++ L++      
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 172 FSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGE----LPHSIA 227
                 L  L L   ++   + + L     L    SL+ + L  N  G      L  S+ 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSL--AATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 228 NLSSTMTDFRIGANQISGTIPPGIRNL 254
                +    +     S  +   ++ L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 374 NLKNLVKLDISGNQFSGV----IPVTLSACVSLEYLNISRNFFHGIIPLSLSS-----LK 424
               L  L ++    S      +  TL A  SL  L++S N       L L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 425 SIKEFNVSSNNLSGLIPEFLKNL 447
            +++  +     S  + + L+ L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 11/96 (11%)

Query: 126 NLPNLKALAIGGNNF----FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSS-----LK 176
               L+ L +   +       S+  +L    +L  LDL++N L     +           
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 177 NLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVIS 212
            L  L L          + L       +  SL+VIS
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQ--ALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 31  LNLQTLAIDFNYLT-GQLPDFVGNLSALKVFYIIGNSLGGK----IPTTLGLLRNLVDLN 85
           L++Q+L I    L+  +  + +  L   +V  +    L       I + L +   L +LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 86  VGENRFSGMFPRSIC-----NISSLEWIYL 110
           +  N    +    +          ++ + L
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 301 NLTKLVELPLSYNNLQGN----IPSSLGNCQILRMFNASRNKLTG----ALPHQLLSITT 352
             + L  L L+  ++  +    + ++L     LR  + S N L       L   +     
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 353 LTLSLDLSNNLLNGSLPLQVGNL-KNLVKLDI 383
           L   L L +   +  +  ++  L K+   L +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 129 NLKALAIGGNNF-FGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSS----LKNLSWLNL 183
           ++++L I             L      +++ L    L      D SS       L+ LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 184 EQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQF 218
             N LG    + +      T    ++ +SL     
Sbjct: 63  RSNELGDVGVHCV-LQGLQTPSCKIQKLSLQNCCL 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 50/323 (15%), Positives = 100/323 (30%), Gaps = 25/323 (7%)

Query: 129 NLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGK----VSIDFSSLKNLSWLNLE 184
           +LK  AI   +   S+   L    +++ + L+ N +  +    +S + +S K+L      
Sbjct: 9   SLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 185 QNNLGMGTANDLDFVTFLT----NCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA 240
               G       + +  L      C  L  + L  N FG      + +  S  T      
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 241 NQISGTIPPGIRNLVNLIALTMEINKLHG-TIPDTIGELKNLQQLSLYNNSLQGSIPSSL 299
              +G  P     +   +       K        +I   +N  +        +      L
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 300 GNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG---ALPHQLLSITTLTLS 356
            +  K+V+  +    ++  +   L  CQ L++ +   N  T    +     L        
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 357 LDLSNNLLNG------SLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACV-----SLEYL 405
           L L++ LL+                  L  L +  N+       TL   +      L +L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 406 NISRNFFHGIIPLSLSSLKSIKE 428
            ++ N F       +  ++ +  
Sbjct: 308 ELNGNRF-SEEDDVVDEIREVFS 329

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 9e-04
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 348 LSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSG----VIPVTLSACVSLE 403
            SI   +L LD        S+   +    ++ ++ +SGN         +   +++   LE
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 404 YLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNL 436
               S  F   +      +L+ + +  +    L
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 30/287 (10%), Positives = 79/287 (27%), Gaps = 23/287 (8%)

Query: 126 NLPNLKALAIGGNNF----FGSIPNSLSNASNLEILDLTSNQ---LKGKVSIDFSSLKNL 178
              ++K + + GN         +  ++++  +LEI + +      +K ++      L   
Sbjct: 29  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 88

Query: 179 SWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRI 238
                + + + +                  K   L             A          +
Sbjct: 89  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 148

Query: 239 GANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGS---- 294
             N+ +   PP    +     L     K       +   L  ++ +              
Sbjct: 149 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 208

Query: 295 --IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITT 352
             +          ++     +     +  +L +   LR    +   L+      ++   +
Sbjct: 209 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 268

Query: 353 LT-----LSLDLSNNLLNGSLPLQV-----GNLKNLVKLDISGNQFS 389
                   +L L  N +       +       + +L+ L+++GN+FS
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 35/318 (11%), Positives = 82/318 (25%), Gaps = 16/318 (5%)

Query: 153 NLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDL-DFVTFLTNCSSLKVI 211
           +L++  +T+   K  V        ++  + L  N +G   A  L + +    +    +  
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 212 SLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTI 271
            ++  +   E+P ++  L   +                G      LI    +   L    
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 272 PDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRM 331
               G         +     + ++     N   L  +    N L+               
Sbjct: 128 LHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV 391
              +   +   +  + +              L        +    N      S      +
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLL-------LEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 392 IPVTLSACVSLEYLNISRNFFHGII-PLSLSSLKSIKEFNVSSNNLSGLIPEFL-----K 445
                   + L    +S      ++   S      ++   +  N +       L     +
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 446 NLSFMEFLDLSYNHFEGE 463
            +  + FL+L+ N F  E
Sbjct: 300 KMPDLLFLELNGNRFSEE 317

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 6/160 (3%)

Query: 7   SNLIELRVSKNKLEGQIPEEI-GSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGN 65
            +  EL ++ N+L     + + G L +L  L +  N LTG  P+     S ++   +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 66  SLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV 125
            +          L  L  LN+ +N+ S + P S  +++SL  + L  N F+ +  L    
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLK 165
                K+L   G       P+ + +   ++I DL  ++ K
Sbjct: 149 EWLRKKSLN--GGAARCGAPSKVRD---VQIKDLPHSEFK 183

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 359 LSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL 418
           L+  L+  +   Q  N     +LD+ G +   VI    +     + ++ S N    +   
Sbjct: 3   LTAELIEQAA--QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG- 58

Query: 419 SLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFE 461
               L+ +K   V++N +  +     + L  +  L L+ N   
Sbjct: 59  -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 20/149 (13%), Positives = 39/149 (26%), Gaps = 8/149 (5%)

Query: 237 RIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
           ++ A  I         N V    L +   K+   I +    L     +   +N ++    
Sbjct: 2   KLTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KL 56

Query: 297 SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLS 356
                L +L  L ++ N +             L     + N L        L+       
Sbjct: 57  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116

Query: 357 LDLSN---NLLNGSLPLQVGNLKNLVKLD 382
           L +               +  +  +  LD
Sbjct: 117 LCILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 17/201 (8%)

Query: 253 NLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSY 312
            L   +   +    +  T+  +  +L  +  L      ++ SI   +  L  L ++  S 
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 71

Query: 313 NNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQV 372
           N L    P       +  + N ++      L +              +      +    +
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL-------TLFNNQITDIDPL 124

Query: 373 GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVS 432
            NL NL +L++S N  S +  ++    +  + LN S N    + PL+  +L +++  ++S
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSL--QQLNFSSNQVTDLKPLA--NLTTLERLDIS 180

Query: 433 SNNLSGLIPEFLKNLSFMEFL 453
           SN +S +    L  L+ +E L
Sbjct: 181 SNKVSDI--SVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 24/206 (11%)

Query: 126 NLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID-FSSLKNLSWLNLE 184
            L       +G  N   ++  S ++   +  L      +K   SID    L NL+ +N  
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 70

Query: 185 QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQIS 244
            N                   + +  +          + ++     + + +         
Sbjct: 71  NNQ-----------------LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 113

Query: 245 GTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTK 304
                   + +  +     +     TI D            L  +S Q +    L NLT 
Sbjct: 114 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTT 173

Query: 305 LVELPLSYNNLQG-NIPSSLGNCQIL 329
           L  L +S N +   ++ + L N + L
Sbjct: 174 LERLDISSNKVSDISVLAKLTNLESL 199

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 23/222 (10%)

Query: 138 NNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGMGTANDLD 197
            +    IP+ L    N   L     +L+      FS   +L  + + QN++      D+ 
Sbjct: 17  ESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 74

Query: 198 FVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGA----------------- 240
                 +   ++  +           +        +++  I                   
Sbjct: 75  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134

Query: 241 ----NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIP 296
               N  +      +      + L +  N +           +  +     NN+L+    
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 297 SSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNK 338
                 +  V L +S   +       L N + LR  +    K
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 10/55 (18%)

Query: 373 GNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIK 427
                 V LDIS  +   +    L     L   +            +L  L +++
Sbjct: 198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY----------NLKKLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 3/51 (5%)

Query: 271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPS 321
             D          L +    +       L NL KL     S  NL+  +P+
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLK-KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 40/228 (17%), Positives = 72/228 (31%), Gaps = 11/228 (4%)

Query: 71  IPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNL 130
           IP+   L RN ++L     +   +   +      LE I +  N     +  D+  NLP L
Sbjct: 23  IPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 131 KALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNLEQNNLGM 190
             + I   N    I              L SN       I      +      +      
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-----GIKHLPDVHKIHSLQKVLLDIQ 135

Query: 191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPG 250
              N            S + + L+ N+ G +  H+ A   + + +  +  N     +P  
Sbjct: 136 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND 195

Query: 251 I-RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPS 297
           +       + L +   ++H      +  LK L+  S YN      +P+
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 7/58 (12%), Positives = 13/58 (22%)

Query: 399 CVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLS 456
               E      N    +              ++S   +  L    L+NL  +      
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 270 TIPDTIG---ELKNLQQLSLYNNSLQGSIP------SSLGNLTKLVELPLSYNNLQGNIP 320
           TI D I    E K++         L G IP      ++L  L     L LS NN++  I 
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS 64

Query: 321 SSLGNCQILRMFN 333
            SL   + LR+ +
Sbjct: 65  -SLSGMENLRILS 76

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 39/178 (21%), Positives = 57/178 (32%), Gaps = 44/178 (24%)

Query: 246 TIPPGIRNL---VNLIALTMEINKLHGTIP------DTIGELKNLQQLSLYNNSLQGSIP 296
           TI   IR      +++A   E  +LHG IP       T+  LK  + L+L  N++     
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKI 63

Query: 297 SSLGNLTKLVELPLSYNNLQGNIPS--------------------------------SLG 324
           SSL  +  L  L L  N ++                                      + 
Sbjct: 64  SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123

Query: 325 NCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLD 382
           N +I       +      L   LL+   L  +    NN  +      V  L NL KLD
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLY-NDYKENNATSEYRIEVVKRLPNLKKLD 180

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 13/145 (8%)

Query: 271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR 330
           +   + +  +  Q +L    L+      L      V L    +++   +     N   L 
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELL 68

Query: 331 MFNASRNKLTG--ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF 388
             N S N+L     +   +     L   L+LS N L     L       L +L + GN  
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLK-ILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 389 SGVIPVT-------LSACVSLEYLN 406
           S                   L  L+
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRLD 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	659
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.78
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.83
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	94.99
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	94.91
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	94.91
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	93.53
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	93.46
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	92.97
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	92.14
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	91.98
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	91.88
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	91.85
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	91.59
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	91.35
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	91.08
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	91.03
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	89.27
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	89.2
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	88.73
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	88.37
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	87.93
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	87.52
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	86.77
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	85.26
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	85.11

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=3.5e-31  Score=262.11  Aligned_cols=255  Identities=27%  Similarity=0.446  Sum_probs=224.2

Q ss_pred             cCCEEEcccCcccc--cCCcccccCCCcCeeeccc-ccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEE
Q 038552          232 TMTDFRIGANQISG--TIPPGIRNLVNLIALTMEI-NKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVEL  308 (659)
Q Consensus       232 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  308 (659)
                      .++.|+++++.+++  .+|..++++++|++|+|++ |.++|.+|..++.+++|++|++++|++.+..+..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            35566666666655  4778888888999999986 78888888888899999999999999888888888888999999


Q ss_pred             EccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcc
Q 038552          309 PLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQF  388 (659)
Q Consensus       309 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  388 (659)
                      ++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+...+++++|++.+..|..+..+..+ .++++++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            9999988888888899999999999999999988998888888875588999999998888888877655 699999999


Q ss_pred             cccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCC
Q 038552          389 SGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKG  468 (659)
Q Consensus       389 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~  468 (659)
                      .+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|+++|.+|+.+..+++|++|++++|+++|.+|..+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            99999999999999999999999987765 68889999999999999999999999999999999999999999999888


Q ss_pred             ccCCcccccccCCCCCcccC
Q 038552          469 VFSNKTKISLQGNVKLCGGI  488 (659)
Q Consensus       469 ~~~~~~~~~~~~n~~lc~~~  488 (659)
                      .+.+++.+++.||+.+||.+
T Consensus       289 ~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTT
T ss_pred             cCCCCCHHHhCCCccccCCC
Confidence            88899999999999999853

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=3.1e-29  Score=248.02  Aligned_cols=252  Identities=31%  Similarity=0.481  Sum_probs=226.0

Q ss_pred             CCcEEEccCCcccc--ccChhHHhccccCCEEEccc-CcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcE
Q 038552          207 SLKVISLYANQFGG--ELPHSIANLSSTMTDFRIGA-NQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQ  283 (659)
Q Consensus       207 ~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  283 (659)
                      +++.|+|+++.+.|  .+|..++.+. +|++|++++ |.++|.+|..++++++|++|++++|.+.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            57778888887766  4778888876 788899886 7888889999999999999999999999988888999999999


Q ss_pred             EEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCC-CEEeCCCcccccccchhhhhcccccceeccccc
Q 038552          284 LSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQIL-RMFNASRNKLTGALPHQLLSITTLTLSLDLSNN  362 (659)
Q Consensus       284 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n  362 (659)
                      +++++|.+.+.+|..++.++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+...  .++++++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~--~l~l~~~  207 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA--FVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS--EEECCSS
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence            9999999999999999999999999999999999999988888776 889999999999988888777655  5899999


Q ss_pred             cccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchh
Q 038552          363 LLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPE  442 (659)
Q Consensus       363 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (659)
                      ...+.+|..+..+++++.+++++|.+.+.++ .+..+++|++|+|++|+++|.+|..+.++++|+.|+|++|+++|.+|.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            9999999999999999999999999987655 688899999999999999999999999999999999999999999885


Q ss_pred             hhcCCCCCCeeeCcCCcCccc
Q 038552          443 FLKNLSFMEFLDLSYNHFEGE  463 (659)
Q Consensus       443 ~l~~l~~L~~l~l~~n~l~~~  463 (659)
                       +..+++|+.+++++|+..+.
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEES
T ss_pred             -cccCCCCCHHHhCCCccccC
Confidence             57889999999999985443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.3e-26  Score=236.76  Aligned_cols=193  Identities=31%  Similarity=0.420  Sum_probs=133.4

Q ss_pred             cccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCC
Q 038552          249 PGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQI  328 (659)
Q Consensus       249 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  328 (659)
                      .....+++++.+++++|.+++..|  +..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+++..  .+..+++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~  264 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTK  264 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--ccccccc
Confidence            344556666677777766665433  3456677777777777663 2 24566777777777777766433  2566677


Q ss_pred             CCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECC
Q 038552          329 LRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNIS  408 (659)
Q Consensus       329 L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  408 (659)
                      |+.|+++++++.+..  .+..+..+. .+++++|.+.+.  ..+..+++++.|++++|++++..  .+..+++|++|+++
T Consensus       265 L~~L~l~~~~l~~~~--~~~~~~~l~-~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~  337 (384)
T d2omza2         265 LTELKLGANQISNIS--PLAGLTALT-NLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA  337 (384)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCS-EEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECC
T ss_pred             CCEeeccCcccCCCC--ccccccccc-cccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECC
Confidence            777777777766432  244555555 677777777642  34677788888888888887653  37788888888888


Q ss_pred             CCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCC
Q 038552          409 RNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYN  458 (659)
Q Consensus       409 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n  458 (659)
                      +|++++ ++ .+.++++|+.|++++|++++..|  +..+++|+.|++++|
T Consensus       338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         338 NNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            888874 33 57888888888888888887654  778888888888877

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.6e-26  Score=236.05  Aligned_cols=186  Identities=28%  Similarity=0.398  Sum_probs=130.1

Q ss_pred             cCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 038552          232 TMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS  311 (659)
Q Consensus       232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  311 (659)
                      .+..+.+++|.+++..|  ...+++|+.|++++|.+++.  ..+..+++|+.+++++|.+.+..+  ++.+++|++|+++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  271 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  271 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeecc
Confidence            44555555555543322  34456666677766666532  245666777777777777664332  5667777777777


Q ss_pred             CCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCccccc
Q 038552          312 YNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV  391 (659)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  391 (659)
                      ++.+.+..  .+..++.++.+++..|.+.+  ...+..++.+. .|++++|++.+..  .+..+++|++|++++|++++.
T Consensus       272 ~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~-~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         272 ANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLT-YLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             SSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCS-EEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred             CcccCCCC--cccccccccccccccccccc--ccccchhcccC-eEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC
Confidence            77766432  35666777777777777764  23456666666 7888888887643  378889999999999999853


Q ss_pred             CCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCC
Q 038552          392 IPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN  434 (659)
Q Consensus       392 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  434 (659)
                       + .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       345 -~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         345 -S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             3 68899999999999999997654  889999999999988

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-24  Score=210.77  Aligned_cols=232  Identities=22%  Similarity=0.229  Sum_probs=162.3

Q ss_pred             CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEcc-CCccccccCccCcCCCCCCEEe
Q 038552          255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLS-YNNLQGNIPSSLGNCQILRMFN  333 (659)
Q Consensus       255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~~L~~L~  333 (659)
                      +++++|+|++|.++...+.+|.++++|++|++++|++.+..+..+..++.++.+... .+.+....+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            345666666666665555556666666666666666665555666666666666554 3344444455666666677777


Q ss_pred             CCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCC
Q 038552          334 ASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFH  413 (659)
Q Consensus       334 l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  413 (659)
                      +++|.+....+..+.....+. .+++++|.+++..+..+..+++|++|++++|++++..+..|.++++|+++++++|++.
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~-~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQ-YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccccccccccchhcccc-hhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            776666544455555556665 6777777777666667778888888888888888777888888888888888888888


Q ss_pred             CCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccCCCCCccCCcccccccCCCCCccc
Q 038552          414 GIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEVPKKGVFSNKTKISLQGNVKLCGG  487 (659)
Q Consensus       414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  487 (659)
                      +..|..|.++++|+.|++++|.+.+..+..++.+++|++|++++|++.+.++.......++......+...|..
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~  264 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL  264 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCC
Confidence            88888888888888888888888888888888888888888888888887764332223334444445555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.4e-23  Score=203.39  Aligned_cols=278  Identities=19%  Similarity=0.226  Sum_probs=148.5

Q ss_pred             CCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccccCCCCCCCEEEC
Q 038552          104 SLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDFSSLKNLSWLNL  183 (659)
Q Consensus       104 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (659)
                      .++.++-++..++ .+|.++.   +++++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|+.|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            4455555555565 5665442   45677777777776554456777777777777777777666666777777777777


Q ss_pred             CCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecc
Q 038552          184 EQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTME  263 (659)
Q Consensus       184 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  263 (659)
                      ++|+++...       .  .....+..|++..|.+.+ ++...                        +.....+..++..
T Consensus        87 ~~n~l~~l~-------~--~~~~~l~~L~~~~n~l~~-l~~~~------------------------~~~~~~~~~l~~~  132 (305)
T d1xkua_          87 SKNQLKELP-------E--KMPKTLQELRVHENEITK-VRKSV------------------------FNGLNQMIVVELG  132 (305)
T ss_dssp             CSSCCSBCC-------S--SCCTTCCEEECCSSCCCB-BCHHH------------------------HTTCTTCCEEECC
T ss_pred             cCCccCcCc-------c--chhhhhhhhhccccchhh-hhhhh------------------------hhccccccccccc
Confidence            777665321       1  112345556655555542 22221                        1222223333333


Q ss_pred             cccC--CCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCccccc
Q 038552          264 INKL--HGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTG  341 (659)
Q Consensus       264 ~n~l--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  341 (659)
                      .+..  ....+..+..+++|+.+++++|.+. .+|..  .+++|+.|++++|...+..+..+..++.++.|++++|.+.+
T Consensus       133 ~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~  209 (305)
T d1xkua_         133 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  209 (305)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             cccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccc
Confidence            3321  1122334555566666666666655 23322  24566666666666665555566666666666665555553


Q ss_pred             ccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcc---
Q 038552          342 ALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL---  418 (659)
Q Consensus       342 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---  418 (659)
                      ..+                         ..+.++++|++|+|++|.++ .+|.++..+++|++|+|++|+++.....   
T Consensus       210 ~~~-------------------------~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         210 VDN-------------------------GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             ECT-------------------------TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             ccc-------------------------ccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhcc
Confidence            333                         33444455555555555554 2344555555555555555555533222   


Q ss_pred             ---cccCCCCCCEEECCCCccc--ccchhhhcCCC
Q 038552          419 ---SLSSLKSIKEFNVSSNNLS--GLIPEFLKNLS  448 (659)
Q Consensus       419 ---~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~  448 (659)
                         .+..+.+|+.|++++|++.  ...|..|..+.
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~  298 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  298 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             CcchhcccCCCCEEECCCCcCccCcCCHhHhcccc
Confidence               2334566777777777664  23344444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.1e-22  Score=199.85  Aligned_cols=266  Identities=19%  Similarity=0.263  Sum_probs=143.6

Q ss_pred             CcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccC
Q 038552           33 LQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPF  112 (659)
Q Consensus        33 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  112 (659)
                      .+.++-++..++ .+|..+.  +++++|+|++|.++...+.+|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            344444444444 3444332  3455555555555433334455555555555555555544455555555555555555


Q ss_pred             ccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCc--cccccccCCCCCCCEEECCCCCCCC
Q 038552          113 NRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLK--GKVSIDFSSLKNLSWLNLEQNNLGM  190 (659)
Q Consensus       113 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~  190 (659)
                      |.++ .+|...   ...++.|.+..|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++.+|.+..
T Consensus        89 n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          89 NQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            5554 444321   234555555555555444444444555555555544322  1222344555556666665554432


Q ss_pred             CCCCCccccccccCCCCCcEEEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC
Q 038552          191 GTANDLDFVTFLTNCSSLKVISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT  270 (659)
Q Consensus       191 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  270 (659)
                      ..       ..  .++                         +++.|++++|..++..+..+..++.++.|++++|.+.+.
T Consensus       165 l~-------~~--~~~-------------------------~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~  210 (305)
T d1xkua_         165 IP-------QG--LPP-------------------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  210 (305)
T ss_dssp             CC-------SS--CCT-------------------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             cC-------cc--cCC-------------------------ccCEEECCCCcCCCCChhHhhcccccccccccccccccc
Confidence            10       00  122                         344444444444444555566666777777777777766


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCcc------CcCCCCCCEEeCCCcccc
Q 038552          271 IPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSS------LGNCQILRMFNASRNKLT  340 (659)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~~~L~~L~l~~n~l~  340 (659)
                      .+..+.++++|++|+|++|++. .+|..+..+++|++|+|++|+++......      +...++|+.|++++|++.
T Consensus       211 ~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            6666777777777777777776 45666777777777777777776432222      234566777777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-23  Score=202.26  Aligned_cols=250  Identities=20%  Similarity=0.190  Sum_probs=202.6

Q ss_pred             EccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEcc-CCC
Q 038552          212 SLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLY-NNS  290 (659)
Q Consensus       212 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~-~n~  290 (659)
                      +.+++.++ .+|..+   +.++++|++++|.+++..+.++.++++|++|++++|.+....+..+..+..++.+.+. .+.
T Consensus        17 ~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             ECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            33444443 445432   3467888888888876666678899999999999999988888888888888888765 556


Q ss_pred             CCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCcc
Q 038552          291 LQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPL  370 (659)
Q Consensus       291 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~  370 (659)
                      +....+..|.++++|++|++++|.+....+..+..+++|+.+++++|.+++..+..+..++.++ .|++++|.+.+..+.
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~-~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT-HLFLHGNRISSVPER  171 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCCEECTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchh-hcccccCcccccchh
Confidence            6666678899999999999999998877777788889999999999999866566777788887 899999999888888


Q ss_pred             ccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCC
Q 038552          371 QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFM  450 (659)
Q Consensus       371 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  450 (659)
                      ++.++++|+++++++|++++..|..|.++++|++|++++|++.+..+..|..+++|+.|++++|++....+.. .-...+
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l  250 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL  250 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998654321 111234


Q ss_pred             CeeeCcCCcCcccCCCC
Q 038552          451 EFLDLSYNHFEGEVPKK  467 (659)
Q Consensus       451 ~~l~l~~n~l~~~~p~~  467 (659)
                      +.+....+.+.+..|..
T Consensus       251 ~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         251 QKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             HHCCSEECCCBEEESGG
T ss_pred             HhCcCCCCceEeCCchH
Confidence            56666777777766643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-22  Score=191.98  Aligned_cols=202  Identities=23%  Similarity=0.274  Sum_probs=129.7

Q ss_pred             CCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeC
Q 038552          255 VNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNA  334 (659)
Q Consensus       255 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  334 (659)
                      ..+..++.+++.++ .+|+.+.  +++++|+|++|.+.+..+..|.++++|++|+|++|.++. ++ .+..+++|+.|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            34444555555555 2343332  355666666666654444556666666666666666552 22 2345566666666


Q ss_pred             CCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCC
Q 038552          335 SRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHG  414 (659)
Q Consensus       335 ~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  414 (659)
                      ++|++. ..+..+..++.++ .|++++|.+.+..+..+..+.++++|++++|.++...+..+..++.|++|++++|++++
T Consensus        85 s~N~l~-~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALT-VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCC-EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccc-ccccccccccccc-cccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            666655 2344455555555 56666666655555666677777788888887776666677777788888888888877


Q ss_pred             CCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCcccC
Q 038552          415 IIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGEV  464 (659)
Q Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~  464 (659)
                      ..+..|..+++|+.|+|++|.++ .+|+.+..+++|+.|++++|++.+.+
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            77777777888888888888877 56666667777888888877777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.1e-21  Score=185.91  Aligned_cols=203  Identities=26%  Similarity=0.264  Sum_probs=178.2

Q ss_pred             cCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccc
Q 038552          276 GELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTL  355 (659)
Q Consensus       276 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~  355 (659)
                      .....+.+++.+++.++ .+|..+.  +.+++|+|++|.+++..+..|.++++|++|++++|+++ .++. +..++.++ 
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~-   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLG-   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCC-
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccc-
Confidence            45667788899999998 5676553  58999999999999776778999999999999999998 4443 46788888 


Q ss_pred             eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN  435 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  435 (659)
                      .|++++|++.+ .+..+..+++|++|++++|.+.+..+..+..+.++++|++++|.+....+..+..+++|+.+++++|+
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            99999999984 46688999999999999999998888889999999999999999998888888999999999999999


Q ss_pred             ccccchhhhcCCCCCCeeeCcCCcCcccCCC-CCccCCcccccccCCCCCcc
Q 038552          436 LSGLIPEFLKNLSFMEFLDLSYNHFEGEVPK-KGVFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       436 l~~~~~~~l~~l~~L~~l~l~~n~l~~~~p~-~~~~~~~~~~~~~~n~~lc~  486 (659)
                      +++..+..+..+++|++|++++|.++ .+|. ......++.+.++||||.|.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            99988889999999999999999998 5654 44567889999999999995

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.1e-21  Score=201.37  Aligned_cols=363  Identities=16%  Similarity=0.145  Sum_probs=161.4

Q ss_pred             CCCCCCEEEeecCcCCc----cCcccccCCCCCCEEeccCccccccChHHHhc----CCCCCcEEEccCCcCCcc----c
Q 038552           77 LLRNLVDLNVGENRFSG----MFPRSICNISSLEWIYLPFNRFSGSLPLDIAV----NLPNLKALAIGGNNFFGS----I  144 (659)
Q Consensus        77 ~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----~l~~L~~L~l~~n~~~~~----~  144 (659)
                      .++++++|+|++|.++.    .++..+..+++|++|+|++|.++..-...+..    ...+|++|++++|+++..    +
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence            34444445554444432    12333445555555555555443111111111    123566666666655432    2


Q ss_pred             ChhccCCCCCCEEEccCCCCcccccccc-----CCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccc
Q 038552          145 PNSLSNASNLEILDLTSNQLKGKVSIDF-----SSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG  219 (659)
Q Consensus       145 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  219 (659)
                      +..+..+++|++|++++|.+.......+     .....................  ......+.....++.++++.+...
T Consensus       105 ~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ls~~~~~  182 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--EPLASVLRAKPDFKELTVSNNDIN  182 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--HHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             cchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh--cccccccccccccccccccccccc
Confidence            3445666777777777776653221111     112223333333332221100  012223444556666776666543


Q ss_pred             ccc----ChhHHhccccCCEEEcccCccccc----CCcccccCCCcCeeecccccCCCC-----CCccccCCCCCcEEEc
Q 038552          220 GEL----PHSIANLSSTMTDFRIGANQISGT----IPPGIRNLVNLIALTMEINKLHGT-----IPDTIGELKNLQQLSL  286 (659)
Q Consensus       220 ~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~l  286 (659)
                      ...    ...+.........+.+..+.+...    ....+...+.++.+++.+|.+...     ..........++.+++
T Consensus       183 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l  262 (460)
T d1z7xw1         183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  262 (460)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             cccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccc
Confidence            211    111122222344455554443311    111223445555555555544221     1112233445555555


Q ss_pred             cCCCCCCC----CCccccCCCCCcEEEccCCccccccCcc-----CcCCCCCCEEeCCCcccccccchhhhhccccccee
Q 038552          287 YNNSLQGS----IPSSLGNLTKLVELPLSYNNLQGNIPSS-----LGNCQILRMFNASRNKLTGALPHQLLSITTLTLSL  357 (659)
Q Consensus       287 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L  357 (659)
                      ++|.+...    ....+...+.++.+++++|.+.......     ......|+.+++++|.++......+          
T Consensus       263 ~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l----------  332 (460)
T d1z7xw1         263 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF----------  332 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH----------
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc----------
Confidence            55554421    1112233455555555555544211111     1122344555555554432211111          


Q ss_pred             ccccccccCCCccccccCCCCceeecCCCccccc----CCcccc-CCCCCCeEECCCCCCCCC----CcccccCCCCCCE
Q 038552          358 DLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGV----IPVTLS-ACVSLEYLNISRNFFHGI----IPLSLSSLKSIKE  428 (659)
Q Consensus       358 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~  428 (659)
                                 ...+...++|++|+|++|++++.    ++..+. ..+.|++|+|++|.++..    +...+..+++|+.
T Consensus       333 -----------~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  401 (460)
T d1z7xw1         333 -----------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  401 (460)
T ss_dssp             -----------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             -----------ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence                       11223445677777777766532    222222 345677777777776532    3344556677777


Q ss_pred             EECCCCcccccchh----hhc-CCCCCCeeeCcCCcCcc
Q 038552          429 FNVSSNNLSGLIPE----FLK-NLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       429 L~l~~n~l~~~~~~----~l~-~l~~L~~l~l~~n~l~~  462 (659)
                      |++++|+++.....    .+. ....|+.+++++|.+..
T Consensus       402 L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            77777776543222    222 23357777777776654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=8.5e-17  Score=160.92  Aligned_cols=55  Identities=27%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             CCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCccc
Q 038552          375 LKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLS  437 (659)
Q Consensus       375 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  437 (659)
                      +++|++|+|++|+++ .+|.   .+++|+.|+|++|+++ .+|..   +++|+.|++++|+++
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            456666666666665 3332   2455666666666665 33322   345666666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=8.1e-17  Score=161.08  Aligned_cols=180  Identities=27%  Similarity=0.265  Sum_probs=107.1

Q ss_pred             CCCCEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEe
Q 038552            7 SNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNV   86 (659)
Q Consensus         7 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   86 (659)
                      .++++|||+++.++ .+|..   .++|++|++++|+++ .+|+.   +.+|+.|++++|.+. .++. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            35777888887776 45642   356778888877777 55654   356777777777763 2221 1  135777888


Q ss_pred             ecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcc
Q 038552           87 GENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKG  166 (659)
Q Consensus        87 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  166 (659)
                      ++|.++ .+| .++.+++|++|+++++.+. ..+.    ....+..+.+..+....  ...+..++.++.+++.+|....
T Consensus       106 ~~n~l~-~lp-~~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         106 SNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccc-ccc-chhhhccceeecccccccc-cccc----ccccccchhhccccccc--cccccccccceecccccccccc
Confidence            777776 444 3566777788877777665 3332    24456666665555432  3446667777777777776543


Q ss_pred             ccccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccc
Q 038552          167 KVSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG  219 (659)
Q Consensus       167 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  219 (659)
                      ...    .....+.+...++.+.        .......++.|+.+++++|...
T Consensus       177 ~~~----~~~~~~~l~~~~~~~~--------~~~~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         177 LPD----LPLSLESIVAGNNILE--------ELPELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             CCC----CCTTCCEEECCSSCCS--------SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccc----cccccccccccccccc--------cccccccccccccccccccccc
Confidence            221    1223345555444332        1223455667777777766544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-20  Score=196.49  Aligned_cols=400  Identities=18%  Similarity=0.154  Sum_probs=223.5

Q ss_pred             CCCCEEEccCCcccccC-chhhcCCCCCcEEeccccCCCc----cccccccCCCCCcEEEccCCccCcc----cccccC-
Q 038552            7 SNLIELRVSKNKLEGQI-PEEIGSLLNLQTLAIDFNYLTG----QLPDFVGNLSALKVFYIIGNSLGGK----IPTTLG-   76 (659)
Q Consensus         7 ~~L~~L~ls~n~~~~~~-~~~~~~~~~L~~L~ls~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~-   76 (659)
                      ++|++||++++++++.. ...++.++++++|+|++|.++.    .+..++..+++|++|+|++|.+...    +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46899999999998643 4446778999999999999874    3456678999999999999988422    223333 


Q ss_pred             CCCCCCEEEeecCcCCcc----CcccccCCCCCCEEeccCccccccChHHH----hcCCCCCcEEEccCCcCCcc----c
Q 038552           77 LLRNLVDLNVGENRFSGM----FPRSICNISSLEWIYLPFNRFSGSLPLDI----AVNLPNLKALAIGGNNFFGS----I  144 (659)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~~l~~L~~L~l~~n~~~~~----~  144 (659)
                      ...+|++|++++|.+++.    ++..+..+++|++|++++|.+...-...+    ....................    .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            345899999999998753    45677889999999999998863222112    11122333444433332211    1


Q ss_pred             ChhccCCCCCCEEEccCCCCcccccc----cc-CCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccc
Q 038552          145 PNSLSNASNLEILDLTSNQLKGKVSI----DF-SSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFG  219 (659)
Q Consensus       145 ~~~l~~l~~L~~L~l~~n~l~~~~~~----~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~  219 (659)
                      ...+.....++.++++++........    .+ ........+++..+.+.....  ......+...+.++.+++..|.+.
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhh--hcccccccccccccccchhhcccc
Confidence            12345567788888887765422111    11 122345667776665433111  012234455667777777777543


Q ss_pred             cccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCC----CCccccCCCCCcEEEccCCCCCCCC
Q 038552          220 GELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGT----IPDTIGELKNLQQLSLYNNSLQGSI  295 (659)
Q Consensus       220 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~  295 (659)
                      .......                    ..........++.+++++|.+...    ....+...+.++.+++++|.+.+..
T Consensus       240 ~~~~~~~--------------------~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~  299 (460)
T d1z7xw1         240 DVGMAEL--------------------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  299 (460)
T ss_dssp             HHHHHHH--------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             ccccchh--------------------hcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2111000                    001112233444444444444321    1112233445555555555543211


Q ss_pred             Cc----c-ccCCCCCcEEEccCCccccccC----ccCcCCCCCCEEeCCCcccccc----cchhhh-hcccccceecccc
Q 038552          296 PS----S-LGNLTKLVELPLSYNNLQGNIP----SSLGNCQILRMFNASRNKLTGA----LPHQLL-SITTLTLSLDLSN  361 (659)
Q Consensus       296 ~~----~-~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~----~~~~~~-~~~~l~~~L~l~~  361 (659)
                      ..    . ....+.|+.+++++|.++....    ..+..+++|++|++++|+++..    ++..+. ....++ .|++++
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~-~L~Ls~  378 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR-VLWLAD  378 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC-EEECTT
T ss_pred             cchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCC-EEECCC
Confidence            11    0 1123456666666665543221    1223445666666666666532    222222 233354 677777


Q ss_pred             ccccCC----CccccccCCCCceeecCCCcccccCCcc----cc-CCCCCCeEECCCCCCCCCCcccc----cCCCCCCE
Q 038552          362 NLLNGS----LPLQVGNLKNLVKLDISGNQFSGVIPVT----LS-ACVSLEYLNISRNFFHGIIPLSL----SSLKSIKE  428 (659)
Q Consensus       362 n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~-~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~  428 (659)
                      |.+++.    ++..+..+++|++|+|++|++++.....    +. +.+.|+.|++.+|.+.......+    ...|+|+.
T Consensus       379 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~  458 (460)
T d1z7xw1         379 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV  458 (460)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred             CCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence            766532    3345667788888888888886532222    22 34578999999998875443332    34566665


Q ss_pred             E
Q 038552          429 F  429 (659)
Q Consensus       429 L  429 (659)
                      |
T Consensus       459 ~  459 (460)
T d1z7xw1         459 I  459 (460)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.6e-17  Score=154.44  Aligned_cols=190  Identities=26%  Similarity=0.333  Sum_probs=131.4

Q ss_pred             cccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCC
Q 038552          251 IRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILR  330 (659)
Q Consensus       251 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  330 (659)
                      +..+.+|+.|++.+|.+...  +.+..+++|++|++++|.+.+..+  +..+++|+++++++|.++ .++ .+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~  110 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIK  110 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCC
T ss_pred             HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccccccccc
Confidence            45566677777777766643  246667777777777777764332  667777777777777665 232 466677777


Q ss_pred             EEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCC
Q 038552          331 MFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRN  410 (659)
Q Consensus       331 ~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  410 (659)
                      .++++++...+.  ..+...+.+. .+.++.+.+...  ..+..+++|++|++++|.+.+.  ..+.++++|++|++++|
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~-~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQ-VLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN  183 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCC-EEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred             cccccccccccc--chhccccchh-hhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCC
Confidence            777777766532  2233444444 566777766543  2467778888999988888643  34788889999999999


Q ss_pred             CCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcC
Q 038552          411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSY  457 (659)
Q Consensus       411 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~  457 (659)
                      ++.+. + .+.++++|+.|++++|++++..  .+..+++|+.|++++
T Consensus       184 ~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         184 KISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             ccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            88754 3 3788889999999999888653  377888899888864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.5e-16  Score=147.87  Aligned_cols=203  Identities=20%  Similarity=0.322  Sum_probs=158.8

Q ss_pred             EEccCCccccccChhHHhccccCCEEEcccCcccccCCcccccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCC
Q 038552          211 ISLYANQFGGELPHSIANLSSTMTDFRIGANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNS  290 (659)
Q Consensus       211 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  290 (659)
                      +++..+.+++..+  ...+. +++.|++.+|.++. + ..++.+++|+.|++++|.+++..+  +..+++++.+++++|.
T Consensus        24 ~~l~~~~~~d~~~--~~~l~-~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTVT--QADLD-GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEEC--HHHHH-TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcCC--HHHcC-CcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            3444455544332  23333 78888888888874 4 358899999999999999886543  7889999999999998


Q ss_pred             CCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCcc
Q 038552          291 LQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPL  370 (659)
Q Consensus       291 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~  370 (659)
                      ++. ++ .+..+++|+.++++++...+.  ..+...+.+..+.++++.+...  ..+...+.++ .|++++|.+.+..  
T Consensus        97 ~~~-i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~-~L~l~~n~~~~~~--  167 (227)
T d1h6ua2          97 LKN-VS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQ-YLSIGNAQVSDLT--  167 (227)
T ss_dssp             CSC-CG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCC-EEECCSSCCCCCG--
T ss_pred             ccc-cc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccc-cccccccccccch--
Confidence            873 43 478899999999999887643  3466778899999999888643  3466777887 8999999987543  


Q ss_pred             ccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCC
Q 038552          371 QVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSS  433 (659)
Q Consensus       371 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  433 (659)
                      .++++++|++|+|++|++++.  ..+.++++|++|+|++|++++..  .++++++|+.|++++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            488999999999999999864  34889999999999999998654  388999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.8e-17  Score=153.81  Aligned_cols=200  Identities=17%  Similarity=0.122  Sum_probs=109.3

Q ss_pred             CcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCC-CccccCCCCCcEEEccC-CccccccCccCcCCCCCCEEe
Q 038552          256 NLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSI-PSSLGNLTKLVELPLSY-NNLQGNIPSSLGNCQILRMFN  333 (659)
Q Consensus       256 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~  333 (659)
                      +++.|++++|.+....+..|.++++|++|++++|.+...+ +..|.+++.++++.+.. |.+....+..|..+++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4555555555555433344555555555555555554322 33455555555555443 344444445555556666666


Q ss_pred             CCCcccccccchh-hhhcccccceeccccccccCCCccccccCC-CCceeecCCCcccccCCccccCCCCCCeE-ECCCC
Q 038552          334 ASRNKLTGALPHQ-LLSITTLTLSLDLSNNLLNGSLPLQVGNLK-NLVKLDISGNQFSGVIPVTLSACVSLEYL-NISRN  410 (659)
Q Consensus       334 l~~n~l~~~~~~~-~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L-~l~~n  410 (659)
                      +++|.+....+.. +..+..+. .+...++.+....+..+..++ .++.|++++|+++...+..+ ..+.++++ ++++|
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~-~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVL-LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNN  187 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEE-EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCT
T ss_pred             cchhhhcccccccccccccccc-cccccccccccccccccccccccceeeecccccccccccccc-cchhhhcccccccc
Confidence            6655554222211 11222222 333444444433344444443 67777888887775444433 34444444 46667


Q ss_pred             CCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcC
Q 038552          411 FFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSY  457 (659)
Q Consensus       411 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~  457 (659)
                      .++...+..|.++++|+.|++++|+++...+..|..+++|+.+++.+
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            77755555677788888888888888765555666776666666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=2.8e-17  Score=148.15  Aligned_cols=175  Identities=17%  Similarity=0.175  Sum_probs=114.3

Q ss_pred             CcEEEccCCccccccCccCcCCCCCCEEeCCCccccccc-chhhhhcccccceeccccccccCCCccccccCCCCceeec
Q 038552          305 LVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGAL-PHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDI  383 (659)
Q Consensus       305 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  383 (659)
                      .+.++.+++.++ .+|..+.  +++++|++++|++++.+ +..+..++.++ .|++++|.+....+..+..+++|++|+|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~-~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLV-KLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCC-EEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEe-eeeccccccccccccccccccccceeee
Confidence            356778888777 5665543  56778888888876544 34455667776 6777777777777777777777777777


Q ss_pred             CCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcCCcCccc
Q 038552          384 SGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSYNHFEGE  463 (659)
Q Consensus       384 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~n~l~~~  463 (659)
                      ++|+++...+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|.+....+..+ ....++.+.+..+.+.+.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeC
Confidence            7777776666777777777777777777776667777777777777777777764432111 111244555666666665


Q ss_pred             CCCCCccCCcccccccCCCCCcc
Q 038552          464 VPKKGVFSNKTKISLQGNVKLCG  486 (659)
Q Consensus       464 ~p~~~~~~~~~~~~~~~n~~lc~  486 (659)
                      .|..  +......++..|...|.
T Consensus       165 ~p~~--l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         165 APSK--VRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             SSTT--TTTSBGGGSCTTTCCCC
T ss_pred             CChh--hcCCEeeecCHhhCcCC
Confidence            5532  34445556666665563

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.9e-16  Score=143.57  Aligned_cols=166  Identities=23%  Similarity=0.315  Sum_probs=97.8

Q ss_pred             cCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCEE
Q 038552          253 NLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMF  332 (659)
Q Consensus       253 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  332 (659)
                      .+.+|++|++++|.+....  .+..+++|++|++++|++++. + .++.+++|++|++++|++++ +| .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccc
Confidence            3445555666555554321  244555555666655555532 2 24455555555555555542 22 34455555555


Q ss_pred             eCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCC
Q 038552          333 NASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFF  412 (659)
Q Consensus       333 ~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  412 (659)
                      ++++|.+.                         . + ..+..++.++.+++++|.+++  +..+..+++|+++++++|.+
T Consensus       118 ~l~~~~~~-------------------------~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2         118 SLEHNGIS-------------------------D-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             ECTTSCCC-------------------------C-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCC
T ss_pred             cccccccc-------------------------c-c-ccccccccccccccccccccc--cccccccccccccccccccc
Confidence            55555433                         1 1 245666777777777777753  23456677777777777777


Q ss_pred             CCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCeeeCcC
Q 038552          413 HGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFLDLSY  457 (659)
Q Consensus       413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l~l~~  457 (659)
                      .+..  .+.++++|+.|++++|.++.. | .+..+++|+.|++++
T Consensus       169 ~~i~--~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         169 SDIV--PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             cccc--cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            7532  367777788888888877643 3 467777788777763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-16  Score=148.44  Aligned_cols=105  Identities=25%  Similarity=0.374  Sum_probs=59.3

Q ss_pred             cEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccC
Q 038552           58 KVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGG  137 (659)
Q Consensus        58 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  137 (659)
                      ++++.++..++ .+|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+...++...+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45666665553 4554432  46677777777766444445666677777777666665444444444555666665543


Q ss_pred             -CcCCcccChhccCCCCCCEEEccCCCCc
Q 038552          138 -NNFFGSIPNSLSNASNLEILDLTSNQLK  165 (659)
Q Consensus       138 -n~~~~~~~~~l~~l~~L~~L~l~~n~l~  165 (659)
                       +.+....+..+.++++|+++++.+|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence             3444444445555555666665555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.3e-16  Score=139.99  Aligned_cols=163  Identities=31%  Similarity=0.438  Sum_probs=97.1

Q ss_pred             ccCCCcCeeecccccCCCCCCccccCCCCCcEEEccCCCCCCCCCccccCCCCCcEEEccCCccccccCccCcCCCCCCE
Q 038552          252 RNLVNLIALTMEINKLHGTIPDTIGELKNLQQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRM  331 (659)
Q Consensus       252 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  331 (659)
                      ..+.++++|++++|.+...  +.++.+++|++|++++|++++..+  ++++++|++|++++|.+.. ++ .+.+++.|+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccc
Confidence            3455566666666655532  234555666666666666553322  5555666666666555542 22 2455555555


Q ss_pred             EeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCC
Q 038552          332 FNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNF  411 (659)
Q Consensus       332 L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  411 (659)
                      |++++|...                         ..  ..+..+++|+.|++++|++...  ..+..+++|++|++++|+
T Consensus       111 L~l~~~~~~-------------------------~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         111 LTLFNNQIT-------------------------DI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             EECCSSCCC-------------------------CC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSC
T ss_pred             ccccccccc-------------------------cc--cccchhhhhHHhhhhhhhhccc--cccccccccccccccccc
Confidence            555554443                         21  2355667777777777777532  346777778888888887


Q ss_pred             CCCCCcccccCCCCCCEEECCCCcccccchhhhcCCCCCCee
Q 038552          412 FHGIIPLSLSSLKSIKEFNVSSNNLSGLIPEFLKNLSFMEFL  453 (659)
Q Consensus       412 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~l  453 (659)
                      +++..  .++++++|+.|++++|++++.  +.+..+++|+.|
T Consensus       162 l~~l~--~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         162 VTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             ccCCc--cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            77542  467778888888888877653  346677777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.7e-16  Score=140.67  Aligned_cols=180  Identities=23%  Similarity=0.357  Sum_probs=119.8

Q ss_pred             EccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCC
Q 038552           13 RVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFS   92 (659)
Q Consensus        13 ~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   92 (659)
                      +++.+.+++.++.  ..+.+|+.|++++|.+++. + .+..+++|++|++++|.+++..  .++.+++|++|++++|.++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            3444455443332  2345777788888777643 2 3677788888888888775432  3577788888888888776


Q ss_pred             ccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCcccccccc
Q 038552           93 GMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSIDF  172 (659)
Q Consensus        93 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  172 (659)
                      + ++ .+.++++|+.|++++|.+. .++. +. .+++++.+++++|.+++.  ..+..+++|+.+++++|++++..  .+
T Consensus       104 ~-l~-~l~~l~~L~~L~l~~~~~~-~~~~-l~-~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l  174 (210)
T d1h6ta2         104 D-LS-SLKDLKKLKSLSLEHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PL  174 (210)
T ss_dssp             C-GG-GGTTCTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GG
T ss_pred             c-cc-ccccccccccccccccccc-cccc-cc-cccccccccccccccccc--ccccccccccccccccccccccc--cc
Confidence            3 33 5777788888888777765 4442 33 577788888877777642  34667778888888888776533  36


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccC
Q 038552          173 SSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYA  215 (659)
Q Consensus       173 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  215 (659)
                      .++++|++|++++|.++.       + +.+..+++|++|+|++
T Consensus       175 ~~l~~L~~L~Ls~N~i~~-------l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHISD-------L-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCCEEECCSSCCCB-------C-GGGTTCTTCSEEEEEE
T ss_pred             cCCCCCCEEECCCCCCCC-------C-hhhcCCCCCCEEEccC
Confidence            777888888888777653       2 3466777777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=9.6e-16  Score=138.78  Aligned_cols=177  Identities=24%  Similarity=0.338  Sum_probs=129.0

Q ss_pred             EEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcC
Q 038552           12 LRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRF   91 (659)
Q Consensus        12 L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l   91 (659)
                      +.++.+.+++...  ...+.++++|++++|.++. + +.+..+++|++|++++|.+++..|  ++++++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            3456666664432  2356788888888888874 3 347788888888888888865433  78888888888888887


Q ss_pred             CccCcccccCCCCCCEEeccCccccccChHHHhcCCCCCcEEEccCCcCCcccChhccCCCCCCEEEccCCCCccccccc
Q 038552           92 SGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAVNLPNLKALAIGGNNFFGSIPNSLSNASNLEILDLTSNQLKGKVSID  171 (659)
Q Consensus        92 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  171 (659)
                      .. ++ .+.++++|+.|+++++... .++ .+. .+++|+.|++++|.+.. + ..+..+++|+.|++.+|.+++..  .
T Consensus        97 ~~-~~-~l~~l~~L~~L~l~~~~~~-~~~-~~~-~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~  167 (199)
T d2omxa2          97 AD-IT-PLANLTNLTGLTLFNNQIT-DID-PLK-NLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--P  167 (199)
T ss_dssp             CC-CG-GGTTCTTCSEEECCSSCCC-CCG-GGT-TCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--G
T ss_pred             cc-cc-ccccccccccccccccccc-ccc-ccc-hhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--c
Confidence            63 33 4778888888888888776 333 233 68888888888888764 3 35788888999999888887543  3


Q ss_pred             cCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEE
Q 038552          172 FSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVI  211 (659)
Q Consensus       172 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L  211 (659)
                      ++++++|++|++++|+++..        +.+..+++|+.|
T Consensus       168 l~~l~~L~~L~ls~N~i~~i--------~~l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNKVSDI--------SVLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCCCCCC--------ccccCCCCCCcC
Confidence            78888899999988887642        346677777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.7e-16  Score=141.58  Aligned_cols=176  Identities=22%  Similarity=0.243  Sum_probs=103.1

Q ss_pred             cEEEccCCCCCCCCCccccCCCCCcEEEccCCcccccc-CccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccc
Q 038552          282 QQLSLYNNSLQGSIPSSLGNLTKLVELPLSYNNLQGNI-PSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLS  360 (659)
Q Consensus       282 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~  360 (659)
                      +.++.++++++ .+|..+  .+.+++|+|++|.+++.+ +..|.++++|+.|++++|.+....+..+..++.+. +|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~-~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ-ELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC-EEECC
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc-eeeec
Confidence            45666666666 445433  246666677766665433 44556666667777766666666666666666666 66677


Q ss_pred             cccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccc
Q 038552          361 NNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLI  440 (659)
Q Consensus       361 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  440 (659)
                      +|++....+.+|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.......+ -...++.+.+..+.+....
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCC
Confidence            776666556666666667777777776666666666666667777776666654322111 0122344455555555444


Q ss_pred             hhhhcCCCCCCeeeCcCCcCcccCC
Q 038552          441 PEFLKNLSFMEFLDLSYNHFEGEVP  465 (659)
Q Consensus       441 ~~~l~~l~~L~~l~l~~n~l~~~~p  465 (659)
                      |..+   ..++.++++.|.+.+..+
T Consensus       166 p~~l---~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         166 PSKV---RDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             STTT---TTSBGGGSCTTTCCCCCC
T ss_pred             Chhh---cCCEeeecCHhhCcCCCC
Confidence            4333   334556666666655433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.2e-15  Score=144.63  Aligned_cols=40  Identities=18%  Similarity=0.218  Sum_probs=18.2

Q ss_pred             ccccCCCcCeeecccc-cCCCCCCccccCCCCCcEEEccCC
Q 038552          250 GIRNLVNLIALTMEIN-KLHGTIPDTIGELKNLQQLSLYNN  289 (659)
Q Consensus       250 ~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n  289 (659)
                      .+..+++|++|++++| .+++.....++.+++|+.|++.++
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3444445555555543 333333333444455555555444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.3e-15  Score=142.49  Aligned_cols=255  Identities=15%  Similarity=0.131  Sum_probs=129.5

Q ss_pred             CEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcc-cccccCCCCCCCEEEeec
Q 038552           10 IELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGK-IPTTLGLLRNLVDLNVGE   88 (659)
Q Consensus        10 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~   88 (659)
                      ++||++++.+.......+.. ..+..+.++...+.... ........|++|+++++.+... ++..+.++++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46778777665222222211 12345555444433221 1223445677777776665432 233456677777777777


Q ss_pred             CcCCccCcccccCCCCCCEEeccCc-cccccChHHHhcCCCCCcEEEccCCc-CCcc-cChhcc-CCCCCCEEEccCC--
Q 038552           89 NRFSGMFPRSICNISSLEWIYLPFN-RFSGSLPLDIAVNLPNLKALAIGGNN-FFGS-IPNSLS-NASNLEILDLTSN--  162 (659)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~l~-~l~~L~~L~l~~n--  162 (659)
                      |.+++..+..++.+++|++|++++| .+++.--..+...+++|++|++++|. ++.. +...+. .+++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            7666555666666777777777664 34321112223356677777776653 2211 111222 2456777777654  


Q ss_pred             CCccc-cccccCCCCCCCEEECCCCC-CCCCCCCCccccccccCCCCCcEEEccCC-ccccccChhHHhccccCCEEEcc
Q 038552          163 QLKGK-VSIDFSSLKNLSWLNLEQNN-LGMGTANDLDFVTFLTNCSSLKVISLYAN-QFGGELPHSIANLSSTMTDFRIG  239 (659)
Q Consensus       163 ~l~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~  239 (659)
                      .++.. +...+.++++|++|++++|. ++.      ..+..+..+++|++|++++| .+++.....+...+ +|+.|++.
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd------~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~-~L~~L~l~  233 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKN------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVF  233 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCG------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECT
T ss_pred             ccccccccccccccccccccccccccCCCc------hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCC-CCCEEeee
Confidence            23222 11223456677777776653 433      34445566677777777764 45544444555544 67777776


Q ss_pred             cCcccccCCcccccCCCcCeeecccccCCCCCCcccc
Q 038552          240 ANQISGTIPPGIRNLVNLIALTMEINKLHGTIPDTIG  276 (659)
Q Consensus       240 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  276 (659)
                      ++.-.+.+......+++   |.+..+.+++..++.++
T Consensus       234 ~~~~d~~l~~l~~~lp~---L~i~~~~ls~~~~~~~~  267 (284)
T d2astb2         234 GIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIG  267 (284)
T ss_dssp             TSSCTTCHHHHHHHSTT---SEESCCCSCCTTCSSCS
T ss_pred             CCCCHHHHHHHHHhCcc---ccccCccCCCCCCCccC
Confidence            65211111111123333   34455556555444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=3.5e-15  Score=148.11  Aligned_cols=136  Identities=18%  Similarity=0.257  Sum_probs=86.6

Q ss_pred             CCCCCEEeCCCcccccc----cchhhhhcccccceeccccccccCC-----CccccccCCCCceeecCCCccccc----C
Q 038552          326 CQILRMFNASRNKLTGA----LPHQLLSITTLTLSLDLSNNLLNGS-----LPLQVGNLKNLVKLDISGNQFSGV----I  392 (659)
Q Consensus       326 ~~~L~~L~l~~n~l~~~----~~~~~~~~~~l~~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~  392 (659)
                      .+.|+.+++++|.+...    +...+.....++ +|++++|.+...     +...+..+++|++|+|++|.++..    +
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~-~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC-EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhc-ccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            44555666655555421    222233444555 566666655421     223466778899999999887643    3


Q ss_pred             CccccCCCCCCeEECCCCCCCCCCc----ccccC--CCCCCEEECCCCccccc----chhhh-cCCCCCCeeeCcCCcCc
Q 038552          393 PVTLSACVSLEYLNISRNFFHGIIP----LSLSS--LKSIKEFNVSSNNLSGL----IPEFL-KNLSFMEFLDLSYNHFE  461 (659)
Q Consensus       393 ~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~--l~~L~~L~l~~n~l~~~----~~~~l-~~l~~L~~l~l~~n~l~  461 (659)
                      ...+..++.|++|+|++|.+.+...    ..+..  .+.|+.|++++|.++..    +...+ .++++|+.|++++|.+.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            3456788889999999998875422    23332  46789999999988653    23344 25788999999999885


Q ss_pred             c
Q 038552          462 G  462 (659)
Q Consensus       462 ~  462 (659)
                      .
T Consensus       316 ~  316 (344)
T d2ca6a1         316 E  316 (344)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.7e-14  Score=124.92  Aligned_cols=129  Identities=18%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             hcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCC
Q 038552           27 IGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLE  106 (659)
Q Consensus        27 ~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  106 (659)
                      |.++.++++|++++|.|+ .++..+..+++|++|++++|.+.. + +.|..+++|++|++++|.++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            445555666666666655 334444555666666666666532 2 2355666666666666666543333445566666


Q ss_pred             EEeccCccccccChH-HHhcCCCCCcEEEccCCcCCccc---ChhccCCCCCCEEEc
Q 038552          107 WIYLPFNRFSGSLPL-DIAVNLPNLKALAIGGNNFFGSI---PNSLSNASNLEILDL  159 (659)
Q Consensus       107 ~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~l  159 (659)
                      +|++++|.++ .++. .....+++|++|++++|.++...   +..+..+++|+.||.
T Consensus        91 ~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cceecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            6666666655 3332 12225566666666666654321   123566677776653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.1e-14  Score=122.38  Aligned_cols=129  Identities=19%  Similarity=0.118  Sum_probs=88.0

Q ss_pred             ccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCccccccCCCC
Q 038552          299 LGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGNLKNL  378 (659)
Q Consensus       299 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~l~~L  378 (659)
                      +.++..+++|+|++|.++ .++..+..+++|+.|++++|.+.                         . + ..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-------------------------~-l-~~~~~l~~L   65 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-------------------------K-L-DGFPLLRRL   65 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-------------------------E-E-CCCCCCSSC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-------------------------c-c-CCcccCcch
Confidence            445555666666666655 33444444555555555555443                         2 1 235677889


Q ss_pred             ceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCc-ccccCCCCCCEEECCCCcccccc---hhhhcCCCCCCeee
Q 038552          379 VKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP-LSLSSLKSIKEFNVSSNNLSGLI---PEFLKNLSFMEFLD  454 (659)
Q Consensus       379 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~l~  454 (659)
                      ++|++++|+++...+..+..+++|++|++++|.+..... ..+..+++|+.|++++|+++...   +..+..+|+|+.||
T Consensus        66 ~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          66 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            999999998887666666788899999999998875422 46788899999999999887543   23567888998887


Q ss_pred             C
Q 038552          455 L  455 (659)
Q Consensus       455 l  455 (659)
                      -
T Consensus       146 ~  146 (162)
T d1a9na_         146 F  146 (162)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.5e-13  Score=112.77  Aligned_cols=119  Identities=21%  Similarity=0.289  Sum_probs=87.8

Q ss_pred             CEEEccCCcccccCchhhcCCCCCcEEeccccCCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecC
Q 038552           10 IELRVSKNKLEGQIPEEIGSLLNLQTLAIDFNYLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGEN   89 (659)
Q Consensus        10 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   89 (659)
                      |+|++++|.++ .++ .+..+++|++|++++|.++ .+|+.++.+++|++|++++|.+.. +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57888988887 344 4788888899999888887 567778888888888888888854 34 4788888888888888


Q ss_pred             cCCccC-cccccCCCCCCEEeccCcccccc--ChHHHhcCCCCCcEE
Q 038552           90 RFSGMF-PRSICNISSLEWIYLPFNRFSGS--LPLDIAVNLPNLKAL  133 (659)
Q Consensus        90 ~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L  133 (659)
                      .++... ...+..+++|++|++++|.+++.  .+..+...+|+|+.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            887432 24677888888888888877621  233343345665554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=2.1e-14  Score=142.35  Aligned_cols=247  Identities=15%  Similarity=0.203  Sum_probs=147.5

Q ss_pred             CchhhcCCCCCcEEeccccCCCcc----ccccccCCCCCcEEEccCCccCcc----------cccccCCCCCCCEEEeec
Q 038552           23 IPEEIGSLLNLQTLAIDFNYLTGQ----LPDFVGNLSALKVFYIIGNSLGGK----------IPTTLGLLRNLVDLNVGE   88 (659)
Q Consensus        23 ~~~~~~~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~   88 (659)
                      +...+.....|+.|+|++|.+...    +...+...++|+.|+++++.....          +...+..+++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            455566777888888888877543    334456778888888877654211          123356678888888888


Q ss_pred             CcCCcc----CcccccCCCCCCEEeccCccccccChHHH------------hcCCCCCcEEEccCCcCCcc----cChhc
Q 038552           89 NRFSGM----FPRSICNISSLEWIYLPFNRFSGSLPLDI------------AVNLPNLKALAIGGNNFFGS----IPNSL  148 (659)
Q Consensus        89 n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------------~~~l~~L~~L~l~~n~~~~~----~~~~l  148 (659)
                      |.+...    +...+..+++|++|++++|.+...-...+            ....+.|+.+.+++|.+...    +...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            887653    33345567888888888887642111111            12456788888888776532    22335


Q ss_pred             cCCCCCCEEEccCCCCccc-----cccccCCCCCCCEEECCCCCCCCCCCCCccccccccCCCCCcEEEccCCccccccC
Q 038552          149 SNASNLEILDLTSNQLKGK-----VSIDFSSLKNLSWLNLEQNNLGMGTANDLDFVTFLTNCSSLKVISLYANQFGGELP  223 (659)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  223 (659)
                      ..++.|++|++++|.++..     +...+..+++|+.|++++|.++.....  .+...+..+++|++|++++|.+++.-.
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~--~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS--ALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH--HHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc--cccccccccccchhhhhhcCccCchhh
Confidence            5677888888888877642     223456677788888887776432111  233456677777788887777664333


Q ss_pred             hhHHhccccCCEEEcccCcccccCCcccc--cCCCcCeeecccccCCCCC----Ccccc-CCCCCcEEEccCCCCC
Q 038552          224 HSIANLSSTMTDFRIGANQISGTIPPGIR--NLVNLIALTMEINKLHGTI----PDTIG-ELKNLQQLSLYNNSLQ  292 (659)
Q Consensus       224 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~----~~~~~-~~~~L~~L~l~~n~l~  292 (659)
                      ..+...                     +.  ..+.|++|++++|.++...    ...+. .+++|+.|++++|.+.
T Consensus       261 ~~l~~~---------------------l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         261 AAVVDA---------------------FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHH---------------------HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHH---------------------hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            322221                     11  1234556666666554321    12221 3556666666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=4.5e-13  Score=109.80  Aligned_cols=102  Identities=25%  Similarity=0.307  Sum_probs=55.0

Q ss_pred             eeccccccccCCCccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCc
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNN  435 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  435 (659)
                      .|++++|+++ .++ .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++. | .+..+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            3455555554 222 3555556666666666655 3344555566666666666665532 2 35556666666666666


Q ss_pred             ccccc-hhhhcCCCCCCeeeCcCCcCcc
Q 038552          436 LSGLI-PEFLKNLSFMEFLDLSYNHFEG  462 (659)
Q Consensus       436 l~~~~-~~~l~~l~~L~~l~l~~n~l~~  462 (659)
                      ++... ...+..+++|+.+++++|++..
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            55432 1345555666666666666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=1.5e-13  Score=123.18  Aligned_cols=131  Identities=25%  Similarity=0.299  Sum_probs=78.8

Q ss_pred             cccccccCCCCCcEEEccCCccCcccccccCCCCCCCEEEeecCcCCccCcccccCCCCCCEEeccCccccccChHHHhc
Q 038552           46 QLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVDLNVGENRFSGMFPRSICNISSLEWIYLPFNRFSGSLPLDIAV  125 (659)
Q Consensus        46 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  125 (659)
                      .++.++..+++|++|+|++|.+.. ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++. +. 
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~~-~~-  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IE-  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHHH-HH-
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cccc-cc-
Confidence            344556666666666666666643 32 3566666777777766665 34444444556777777777665 3432 32 


Q ss_pred             CCCCCcEEEccCCcCCcccC-hhccCCCCCCEEEccCCCCccccccc----------cCCCCCCCEEE
Q 038552          126 NLPNLKALAIGGNNFFGSIP-NSLSNASNLEILDLTSNQLKGKVSID----------FSSLKNLSWLN  182 (659)
Q Consensus       126 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----------l~~l~~L~~L~  182 (659)
                      .+++|+.|++++|+++.... ..+..+++|+.|++++|.+....+..          +..+++|+.||
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            46677777777776654321 34667777777777777665433221          45677888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.1e-11  Score=104.19  Aligned_cols=110  Identities=18%  Similarity=0.117  Sum_probs=71.4

Q ss_pred             CCCCCCEEEccCCcccccCchhhcCCCCCcEEecccc-CCCccccccccCCCCCcEEEccCCccCcccccccCCCCCCCE
Q 038552            5 RYSNLIELRVSKNKLEGQIPEEIGSLLNLQTLAIDFN-YLTGQLPDFVGNLSALKVFYIIGNSLGGKIPTTLGLLRNLVD   83 (659)
Q Consensus         5 ~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ls~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   83 (659)
                      .+.....++.+++.+. ..|..+..+++|++|+++++ .++...+.+|.++++|+.|++++|.+....+.+|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3445566777777665 45666777777777777654 366555566777777777777777776666666777777777


Q ss_pred             EEeecCcCCccCcccccCCCCCCEEeccCcccc
Q 038552           84 LNVGENRFSGMFPRSICNISSLEWIYLPFNRFS  116 (659)
Q Consensus        84 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  116 (659)
                      |+|++|+++. +|.......+|++|++++|++.
T Consensus        85 L~Ls~N~l~~-l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALES-LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred             eeccCCCCcc-cChhhhccccccccccCCCccc
Confidence            7777777763 3333333335777777777663

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=2.2e-13  Score=122.12  Aligned_cols=130  Identities=26%  Similarity=0.310  Sum_probs=67.9

Q ss_pred             CCccccCCCCCcEEEccCCccccccCccCcCCCCCCEEeCCCcccccccchhhhhcccccceeccccccccCCCcccccc
Q 038552          295 IPSSLGNLTKLVELPLSYNNLQGNIPSSLGNCQILRMFNASRNKLTGALPHQLLSITTLTLSLDLSNNLLNGSLPLQVGN  374 (659)
Q Consensus       295 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~l~~  374 (659)
                      ++..+..+++|++|++++|.++ .++ .+..+++|+.|++++|.++ .+|.                         ....
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~-------------------------~~~~   91 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIEN-------------------------LDAV   91 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSS-------------------------HHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccc-------------------------cccc
Confidence            3445555666666666666655 232 3555556666666655554 2222                         2222


Q ss_pred             CCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCc-ccccCCCCCCEEECCCCcccccchh----------h
Q 038552          375 LKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIP-LSLSSLKSIKEFNVSSNNLSGLIPE----------F  443 (659)
Q Consensus       375 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~  443 (659)
                      +++|++|++++|+++..  ..+..+++|++|++++|+++.... ..+..+++|+.|++++|++....+.          .
T Consensus        92 ~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~v  169 (198)
T d1m9la_          92 ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHH
T ss_pred             ccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHH
Confidence            33455555555555432  234455555566666655553221 3456666666666666665433221          2


Q ss_pred             hcCCCCCCeee
Q 038552          444 LKNLSFMEFLD  454 (659)
Q Consensus       444 l~~l~~L~~l~  454 (659)
                      +..+|+|+.||
T Consensus       170 i~~lp~L~~LD  180 (198)
T d1m9la_         170 VKRLPNLKKLD  180 (198)
T ss_dssp             HHHCSSCCEES
T ss_pred             HHHCCCcCEeC
Confidence            45677777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.8e-11  Score=102.60  Aligned_cols=107  Identities=19%  Similarity=0.136  Sum_probs=86.7

Q ss_pred             eeccccccccCCCccccccCCCCceeecCCC-cccccCCccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCC
Q 038552          356 SLDLSNNLLNGSLPLQVGNLKNLVKLDISGN-QFSGVIPVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSN  434 (659)
Q Consensus       356 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  434 (659)
                      .++.+++.+. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|+|++|+++.+.+.+|.++++|+.|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            5777777776 45677888889999999766 487777778899999999999999999888888999999999999999


Q ss_pred             cccccchhhhcCCCCCCeeeCcCCcCcccC
Q 038552          435 NLSGLIPEFLKNLSFMEFLDLSYNHFEGEV  464 (659)
Q Consensus       435 ~l~~~~~~~l~~l~~L~~l~l~~n~l~~~~  464 (659)
                      +++...+..+..+ +|+.|++++|++.+.+
T Consensus        91 ~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          91 ALESLSWKTVQGL-SLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CCSCCCSTTTCSC-CCCEEECCSSCCCCCG
T ss_pred             CCcccChhhhccc-cccccccCCCcccCCc
Confidence            9986555555544 6889999999987655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.4e-08  Score=86.99  Aligned_cols=84  Identities=20%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             ccccCCCCceeecCCCcccccC--CccccCCCCCCeEECCCCCCCCCCcccccCCCCCCEEECCCCcccccch-------
Q 038552          371 QVGNLKNLVKLDISGNQFSGVI--PVTLSACVSLEYLNISRNFFHGIIPLSLSSLKSIKEFNVSSNNLSGLIP-------  441 (659)
Q Consensus       371 ~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------  441 (659)
                      ....+++|++|+|++|+++...  +..+..+++|+.|++++|.+....+..+.....|+.|++++|+++....       
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            3456777888888888777542  3445677788888888888775444334445567888888888765433       


Q ss_pred             hhhcCCCCCCeee
Q 038552          442 EFLKNLSFMEFLD  454 (659)
Q Consensus       442 ~~l~~l~~L~~l~  454 (659)
                      ..+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            2345677787775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=9.8e-08  Score=81.55  Aligned_cols=82  Identities=24%  Similarity=0.230  Sum_probs=52.4

Q ss_pred             hhcccccceeccccccccCC--CccccccCCCCceeecCCCcccccCCccccCCCCCCeEECCCCCCCCCCcc-------
Q 038552          348 LSITTLTLSLDLSNNLLNGS--LPLQVGNLKNLVKLDISGNQFSGVIPVTLSACVSLEYLNISRNFFHGIIPL-------  418 (659)
Q Consensus       348 ~~~~~l~~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------  418 (659)
                      ..++.++ +|++++|+++..  ++..+..+++|+.|+|++|.++...+-.+.....|++|++++|.+......       
T Consensus        62 ~~~~~L~-~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELL-SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCC-CCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCC-EeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            3455555 566666666543  234466778888888888888754443344455688888888888755432       


Q ss_pred             cccCCCCCCEEE
Q 038552          419 SLSSLKSIKEFN  430 (659)
Q Consensus       419 ~~~~l~~L~~L~  430 (659)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            256678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=7e-06  Score=70.01  Aligned_cols=87  Identities=11%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             CCCCCCEEEccCC-ccccc----CchhhcCCCCCcEEeccccCCCcc----ccccccCCCCCcEEEccCCccCcc----c
Q 038552            5 RYSNLIELRVSKN-KLEGQ----IPEEIGSLLNLQTLAIDFNYLTGQ----LPDFVGNLSALKVFYIIGNSLGGK----I   71 (659)
Q Consensus         5 ~~~~L~~L~ls~n-~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~   71 (659)
                      +.++|++|+|+++ .++..    +..++...++|++|++++|.+...    +...+...+.|++|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4567777777753 35432    233455666677777777766532    223344556666666666665422    1


Q ss_pred             ccccCCCCCCCEEEeecCcC
Q 038552           72 PTTLGLLRNLVDLNVGENRF   91 (659)
Q Consensus        72 ~~~~~~l~~L~~L~l~~n~l   91 (659)
                      -..+...+.|++|++++|.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            22345555666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.78  E-value=4.8e-06  Score=71.06  Aligned_cols=89  Identities=20%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             ccccCCCCceeecCCCcccccC----CccccCCCCCCeEECCCCCCCCC----CcccccCCCCCCEEECCCCccccc---
Q 038552          371 QVGNLKNLVKLDISGNQFSGVI----PVTLSACVSLEYLNISRNFFHGI----IPLSLSSLKSIKEFNVSSNNLSGL---  439 (659)
Q Consensus       371 ~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---  439 (659)
                      .+...+.|++|+|++|.+....    ...+...+.|++|+|++|.+...    +-.++...++|++|++++|.+...   
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            3445566777777777665321    22344556777777777776643    223456667777888877754322   


Q ss_pred             ----chhhhcCCCCCCeeeCcCCc
Q 038552          440 ----IPEFLKNLSFMEFLDLSYNH  459 (659)
Q Consensus       440 ----~~~~l~~l~~L~~l~l~~n~  459 (659)
                          +...+...++|+.|+++++.
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCC
Confidence                33455566777777776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.20  E-value=6.1e-05  Score=63.95  Aligned_cols=16  Identities=6%  Similarity=-0.095  Sum_probs=7.9

Q ss_pred             CCCCCcEEeccccCCC
Q 038552           29 SLLNLQTLAIDFNYLT   44 (659)
Q Consensus        29 ~~~~L~~L~ls~~~~~   44 (659)
                      .+++|+.|++++|.+.
T Consensus        44 ~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCCSCCEEECTTSCCC
T ss_pred             cCCccCeeeccCCccc
Confidence            4445555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.83  E-value=0.00015  Score=61.52  Aligned_cols=67  Identities=19%  Similarity=0.275  Sum_probs=30.1

Q ss_pred             cCCCCCCEEEccCCCCccc----cccccCCCCCCCEEECC--CCCCCCCCCCCccccccccCCCCCcEEEccCCc
Q 038552          149 SNASNLEILDLTSNQLKGK----VSIDFSSLKNLSWLNLE--QNNLGMGTANDLDFVTFLTNCSSLKVISLYANQ  217 (659)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~--~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~  217 (659)
                      ...++++.+++++|.++..    +...+...++|+.++|.  .|.+.....  ..+...+..+++|+.|+++.+.
T Consensus        71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~--~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE--MEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH--HHHHHHHHHCSSCCEEECCCSS
T ss_pred             hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH--HHHHHHHHhCCCcCEEeCcCCC
Confidence            3344555555555544322    12234455556654443  233322110  1233445556666666665543

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0076  Score=56.34  Aligned_cols=36  Identities=14%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHhhhcC
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRESFLGR  657 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~~~~~  657 (659)
                      +.++...|.+.+|.+||+|.||++.|+.++..+.+.
T Consensus       263 l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~~~~~  298 (311)
T d1r0pa_         263 LYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE  298 (311)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhhhhh
Confidence            446778999999999999999999999999877654

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0083  Score=54.57  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||+|+||++.|+.++++
T Consensus       231 l~~li~~cl~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         231 VYQIMNHCWKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHhHCcCHHHHHHHHHHHHhC
Confidence            45777889999999999999999999999864

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.015  Score=53.96  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          617 ECLNAIIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       617 ~~~~~~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +....+..+...|.+.+|.+||||.||+++|+.+++.
T Consensus       262 ~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         262 EALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence            4555677899999999999999999999999999864

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.025  Score=51.80  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=28.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++..+|.+.+|.+||+|.||+++|+.+.+.
T Consensus       242 l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~  273 (283)
T d1mqba_         242 IYQLMMQCWQQERARRPKFADIVSILDKLIRA  273 (283)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence            55788999999999999999999999987653

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.46  E-value=0.015  Score=53.91  Aligned_cols=30  Identities=20%  Similarity=0.167  Sum_probs=27.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      +..+...|.+.+|.+||||.||+++|++|.
T Consensus       271 ~~~li~~cl~~~P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         271 LYNLMRLCWSKLPADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            567888999999999999999999999875

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.029  Score=50.66  Aligned_cols=30  Identities=13%  Similarity=0.074  Sum_probs=26.8

Q ss_pred             HHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          623 IRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       623 ~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      .++-..|.+.+|.+||||.+|+++|+.+|.
T Consensus       230 ~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         230 YEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence            355678999999999999999999999985

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.047  Score=49.63  Aligned_cols=32  Identities=22%  Similarity=0.126  Sum_probs=28.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||||.||+++|+.++++
T Consensus       242 l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~  273 (276)
T d1uwha_         242 MKRLMAECLKKKRDERPLFPQILASIELLARS  273 (276)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHc
Confidence            44667789999999999999999999999864

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.046  Score=49.63  Aligned_cols=29  Identities=21%  Similarity=0.204  Sum_probs=25.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||||.+|+++|+.+
T Consensus       239 l~~li~~cl~~~P~~Rpt~~ei~~~L~~~  267 (272)
T d1qpca_         239 LYQLMRLCWKERPEDRPTFDYLRSVLEDF  267 (272)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHhhhh
Confidence            44667789999999999999999999864

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.88  E-value=0.06  Score=49.60  Aligned_cols=31  Identities=16%  Similarity=0.117  Sum_probs=27.2

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||+|.+|+++|+.+-+
T Consensus       262 l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~  292 (299)
T d1jpaa_         262 LHQLMLDCWQKDRNHRPKFGQIVNTLDKMIR  292 (299)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence            4567789999999999999999999988754

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.045  Score=50.51  Aligned_cols=30  Identities=17%  Similarity=0.176  Sum_probs=27.3

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      +.++..+|.+.+|.+||||.||+++|+++-
T Consensus       266 l~~li~~cl~~dP~~Rps~~eil~~L~~i~  295 (299)
T d1fgka_         266 LYMMMRDCWHAVPSQRPTFKQLVEDLDRIV  295 (299)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHhHCcCHHHHHHHHHHHh
Confidence            557888999999999999999999999884

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.055  Score=50.18  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=26.9

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||+|.+|++.|+++.+
T Consensus       255 ~~~li~~cl~~dP~~RPs~~eil~~L~~i~~  285 (309)
T d1fvra_         255 VYDLMRQCWREKPYERPSFAQILVSLNRMLE  285 (309)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            3455678999999999999999999998875

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.065  Score=49.67  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=26.8

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||+|.+|+++|+++..
T Consensus       277 l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~  307 (311)
T d1t46a_         277 MYDIMKTCWDADPLKRPTFKQIVQLIEKQIS  307 (311)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHhhc
Confidence            4567788999999999999999999987543

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.035  Score=51.49  Aligned_cols=31  Identities=16%  Similarity=0.252  Sum_probs=27.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||||.+|+++|+...+
T Consensus       264 l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         264 LFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            5677788999999999999999999987644

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.03  E-value=0.07  Score=49.15  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=27.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||||.||++.|+.+.+
T Consensus       266 l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq  296 (299)
T d1ywna1         266 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  296 (299)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            4466778999999999999999999998754

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.27  E-value=0.087  Score=48.11  Aligned_cols=30  Identities=13%  Similarity=0.101  Sum_probs=26.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTR  651 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~  651 (659)
                      +.++...|.+.+|.+||||.+|+++|+.+.
T Consensus       245 l~~li~~cl~~dP~~Rps~~ei~~~L~~~~  274 (287)
T d1opja_         245 VYELMRACWQWNPSDRPSFAEIHQAFETMF  274 (287)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            456778899999999999999999998764

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.1  Score=47.48  Aligned_cols=29  Identities=21%  Similarity=0.123  Sum_probs=25.5

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.+|+.+|+..
T Consensus       243 l~~li~~cl~~dP~~Rps~~~i~~~L~~~  271 (285)
T d1fmka3         243 LHDLMCQCWRKEPEERPTFEYLQAFLEDY  271 (285)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred             HHHHHHHHcccCHhHCcCHHHHHHHHhhh
Confidence            45677899999999999999999999764

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.18  Score=45.84  Aligned_cols=32  Identities=13%  Similarity=0.010  Sum_probs=27.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++...|.+.+|.+||+|.+|++.|+.+...
T Consensus       241 l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         241 LYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence            34667789999999999999999999877543

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=0.16  Score=45.89  Aligned_cols=29  Identities=14%  Similarity=0.071  Sum_probs=25.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||+|.+|+.+|+..
T Consensus       239 ~~~li~~cl~~dp~~RPs~~~i~~~L~~~  267 (277)
T d1xbba_         239 MYDLMNLCWTYDVENRPGFAAVELRLRNY  267 (277)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence            34566789999999999999999999765

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.14  Score=46.24  Aligned_cols=29  Identities=21%  Similarity=0.215  Sum_probs=25.4

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHT  650 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~  650 (659)
                      +.++...|.+.+|.+||||.+|+.+|..+
T Consensus       244 l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         244 IYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            45777889999999999999999988765

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=0.19  Score=45.39  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=27.1

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHHh
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRES  653 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~~  653 (659)
                      +.++-..|.+.+|.+||||.||++.|+.+.+.
T Consensus       238 ~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         238 LYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence            34556789999999999999999999988653

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.77  E-value=0.22  Score=46.10  Aligned_cols=31  Identities=16%  Similarity=0.262  Sum_probs=27.0

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCHTRE  652 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~~~~  652 (659)
                      +.++...|.+.+|.+||+|.||+..|..+..
T Consensus       242 ~~~li~~cl~~dP~~RPs~~eil~~l~~~~~  272 (317)
T d1xkka_         242 VYMIMVKCWMIDADSRPKFRELIIEFSKMAR  272 (317)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChhhCcCHHHHHHHHHHHHh
Confidence            4567778999999999999999999988753

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.26  E-value=0.19  Score=44.86  Aligned_cols=28  Identities=14%  Similarity=0.191  Sum_probs=23.9

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLCH  649 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~~  649 (659)
                      +.++.-.|.+.+|.+||||.+++..|..
T Consensus       230 l~~li~~cl~~dP~~RPt~~eil~~L~d  257 (258)
T d1k2pa_         230 VYTIMYSCWHEKADERPTFKILLSNILD  257 (258)
T ss_dssp             HHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred             HHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence            4466778999999999999999998853

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=0.24  Score=45.97  Aligned_cols=27  Identities=15%  Similarity=0.052  Sum_probs=23.6

Q ss_pred             HHHHhHhcCCCCCcCCCChHHHHHHHH
Q 038552          622 IIRTGVLCSMESPFERMDMRDIVAKLC  648 (659)
Q Consensus       622 ~~~val~C~~~~p~~RP~M~~Vv~~L~  648 (659)
                      +.++...|.+.+|.+||||.||+++|.
T Consensus       296 l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         296 IYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            446667899999999999999999985