Citrus Sinensis ID: 038555

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGFQNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSPGNFTWAVERQDNPELMMWKGSRKFQRSGPWNGLKFSATSLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLRQRFTWDKATQSWELYAN
ccccccEEEccccEEEEEEcccccccccEEEEEccccccccEEEEcccccccccccccccccEEEcccccccccccEEEEEEccccEEEEEccccccccEEEEEccccccccccccEEEEEEccccEEEEEEcccccccccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccccEEEEEEEcccEEEEEEEEccccEEEEEEEcccccEEEEEEEEcccccEEEEEc
ccccccEEEccccEEEEEEEcccccccEEEEEEEEEccccEEEEEEEcccccccccccccccEEEEccccccccccHHHEEcccccEEEEEcccccccccEEEEcccccccccccccccccccccccHEEEccccccccccccEEEEEccccccEEEEEcccEEEEEccccccEEEcccccccccEEEEEEEEcccEEEEEEEEEcccEEEEEEEccccEEEEEEEEccccccEEEEcc
slsdgrtlvskegsfelgffspgssknryvgiwyknmpvKTVVWVANrinpindssgfqnkSVVWSanlskevrIPVVLQLLdsgnlvlrgerdggsetylwqsfdypsdtllpgmklgwDLKTGLErritswkspddpspgnftwaverqdnpelmmwkgsrkfqrsgpwnglkfsatslrpnpifnfsfvsnedelyfTIDLIDKAVFSRIVMNQTLYLRQRFTWDKATQSWELYAN
slsdgrtlvskegsfelgffspgssknryVGIWYKNMPVKTVVWVANRINpindssgfqnKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRItswkspddpspgnfTWAVERQDNPELMMWKGSRKFQRSGPWNGLKFSATSLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLrqrftwdkatqswelyan
SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGFQNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSPGNFTWAVERQDNPELMMWKGSRKFQRSGPWNGLKFSATSLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLRQRFTWDKATQSWELYAN
****************LGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGFQNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSW**********FTWAV*******LMMWKG**KFQRSGPWNGLKFSATSLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLRQRFTWDKATQSWELY**
SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGFQNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSPGNFTWAVERQDNPELMMWKGSRKFQRSGPWNGLKFSATSLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLRQRFTWDKATQSWELYAN
********VSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGFQNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSPGNFTWAVERQDNPELMMWKGSRKFQRSGPWNGLKFSATSLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLRQRFTWDKATQSWELYAN
****GRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGFQNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSPGNFTWAVERQDNPELMMWKGSRKFQRSGPWNGLKFSATSLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLRQRFTWDKATQSWELYAN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGFQNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSPGNFTWAVERQDNPELMMWKGSRKFQRSGPWNGLKFSATSLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLRQRFTWDKATQSWELYAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query239 2.2.26 [Sep-21-2011]
O81832 783 G-type lectin S-receptor- yes no 0.974 0.297 0.445 3e-54
O81905 850 Receptor-like serine/thre no no 0.987 0.277 0.430 4e-53
P07761 436 S-locus-specific glycopro N/A no 0.979 0.536 0.434 7e-52
P17840 435 S-locus-specific glycopro N/A no 0.983 0.540 0.424 3e-50
Q39086 843 Receptor-like serine/thre no no 0.949 0.269 0.412 4e-47
Q9LPZ3 845 G-type lectin S-receptor- no no 0.962 0.272 0.418 4e-46
P22553 435 S-locus-specific glycopro N/A no 0.979 0.537 0.406 5e-46
Q09092 857 Putative serine/threonine N/A no 0.966 0.269 0.403 3e-45
Q9ZT07 833 G-type lectin S-receptor- no no 0.962 0.276 0.426 4e-45
P0DH87 546 Putative inactive G-type no no 0.983 0.430 0.408 1e-44
>sp|O81832|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4 Back     alignment and function desciption
 Score =  211 bits (538), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/256 (44%), Positives = 165/256 (64%), Gaps = 23/256 (8%)

Query: 1   SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSG--- 57
           +L DG T+VS+ GSFE+GFFSPG S+NRY+GIWYK + ++TVVWVANR +P+ D SG   
Sbjct: 32  TLKDGDTIVSQGGSFEVGFFSPGGSRNRYLGIWYKKISLQTVVWVANRDSPLYDLSGTLK 91

Query: 58  ---------FQNKS-VVWSANL-----SKEVRIPVVLQLLDSGNLVLRGERDGGSETYLW 102
                    F +++ ++WS++         +R P+V Q+LD+GNLV+R    G  + Y+W
Sbjct: 92  VSENGSLCLFNDRNHIIWSSSSSPSSQKASLRNPIV-QILDTGNLVVRNS--GDDQDYIW 148

Query: 103 QSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSPGNFTWAVERQDNPELMMWKGS 162
           QS DYP D  LPGMK G +  TGL R +TSW++ DDPS GN+T  ++    P+  + K S
Sbjct: 149 QSLDYPGDMFLPGMKYGLNFVTGLNRFLTSWRAIDDPSTGNYTNKMDPNGVPQFFLKKNS 208

Query: 163 RKFQRSGPWNGLKFSAT-SLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYL 221
               R+GPWNGL+F+   +L+PNPI+ + +V  E+E+Y+T  L + +V +R+ +N    L
Sbjct: 209 VVVFRTGPWNGLRFTGMPNLKPNPIYRYEYVFTEEEVYYTYKLENPSVLTRMQLNPNGAL 268

Query: 222 RQRFTWDKATQSWELY 237
            QR+TW    QSW  Y
Sbjct: 269 -QRYTWVDNLQSWNFY 283

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1 Back     alignment and function description
>sp|P07761|SLSG6_BRAOL S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|P17840|SLSG3_BRAOL S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana GN=SD17 PE=1 SV=1 Back     alignment and function description
>sp|Q9LPZ3|Y1141_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3 Back     alignment and function description
>sp|P22553|SLSG2_BRAOA S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1 Back     alignment and function description
>sp|Q09092|SRK6_BRAOE Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZT07|RKS1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=2 SV=3 Back     alignment and function description
>sp|P0DH87|PSRK_ARATH Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS=Arabidopsis thaliana GN=PSEUDOSRKA PE=5 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
224113149 820 predicted protein [Populus trichocarpa] 0.995 0.290 0.628 5e-88
224122938 371 predicted protein [Populus trichocarpa] 0.966 0.622 0.639 1e-87
224124250 820 predicted protein [Populus trichocarpa] 0.991 0.289 0.631 2e-87
224126243 836 predicted protein [Populus trichocarpa] 0.991 0.283 0.628 6e-87
224151394 439 predicted protein [Populus trichocarpa] 0.991 0.539 0.631 7e-87
224113157 786 predicted protein [Populus trichocarpa] 0.995 0.302 0.600 6e-83
224113153 785 predicted protein [Populus trichocarpa] 0.995 0.303 0.596 1e-82
224115136 843 predicted protein [Populus trichocarpa] 0.966 0.274 0.570 1e-75
356514895 821 PREDICTED: G-type lectin S-receptor-like 0.983 0.286 0.563 2e-73
356546914 788 PREDICTED: G-type lectin S-receptor-like 0.995 0.302 0.527 2e-73
>gi|224113149|ref|XP_002332642.1| predicted protein [Populus trichocarpa] gi|222832837|gb|EEE71314.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 161/256 (62%), Positives = 199/256 (77%), Gaps = 18/256 (7%)

Query: 1   SLSDG--RTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGF 58
           S+ DG  RTLVSK+GSFELGFFSPGSS+NRYVGIWYKN+PV+TVVWVANR NPINDSSGF
Sbjct: 27  SVCDGGTRTLVSKDGSFELGFFSPGSSRNRYVGIWYKNIPVRTVVWVANRNNPINDSSGF 86

Query: 59  --------------QNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQS 104
                          N +VVWS+N SK+     + +LLDSGNLVLR E+D  S  YLWQS
Sbjct: 87  LMLDNTGNLVLVSNNNSTVVWSSN-SKKAAQSAMGELLDSGNLVLRDEKDANSGIYLWQS 145

Query: 105 FDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSPGNFTWAVERQDNPELMMWKGSRK 164
           FDYPSDTLLPGMKLGWDL+ GL+RR+++WKSPDDPS G+FTW  + Q NPEL+MWKGS++
Sbjct: 146 FDYPSDTLLPGMKLGWDLRIGLDRRLSAWKSPDDPSSGDFTWGTQLQSNPELVMWKGSKE 205

Query: 165 FQRSGPWNGLKFSAT-SLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYLRQ 223
           + RSGPWNG+ FS    LR NP+F F FV + +E+Y+T +L +K++ +RIVMNQ+ Y RQ
Sbjct: 206 YYRSGPWNGIGFSGGPELRINPVFYFDFVDDGEEVYYTYNLKNKSLITRIVMNQSTYFRQ 265

Query: 224 RFTWDKATQSWELYAN 239
           R+TW++  Q+W LYAN
Sbjct: 266 RYTWNEINQTWVLYAN 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122938|ref|XP_002330401.1| predicted protein [Populus trichocarpa] gi|222871786|gb|EEF08917.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124250|ref|XP_002319283.1| predicted protein [Populus trichocarpa] gi|222857659|gb|EEE95206.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126243|ref|XP_002319790.1| predicted protein [Populus trichocarpa] gi|222858166|gb|EEE95713.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224151394|ref|XP_002337099.1| predicted protein [Populus trichocarpa] gi|222838019|gb|EEE76384.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224113157|ref|XP_002332644.1| predicted protein [Populus trichocarpa] gi|222832839|gb|EEE71316.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224113153|ref|XP_002332643.1| predicted protein [Populus trichocarpa] gi|222832838|gb|EEE71315.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115136|ref|XP_002316951.1| predicted protein [Populus trichocarpa] gi|222860016|gb|EEE97563.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514895|ref|XP_003526137.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] Back     alignment and taxonomy information
>gi|356546914|ref|XP_003541865.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
TAIR|locus:2131684 783 AT4G27290 [Arabidopsis thalian 0.974 0.297 0.449 9.9e-55
TAIR|locus:2141181 850 RK3 "receptor kinase 3" [Arabi 0.987 0.277 0.430 2.6e-53
TAIR|locus:2018546 843 RK1 "receptor kinase 1" [Arabi 0.958 0.271 0.416 4.9e-47
TAIR|locus:2088619 439 AT3G12000 [Arabidopsis thalian 0.987 0.537 0.416 1.6e-45
TAIR|locus:2018506 847 RK2 "receptor kinase 2" [Arabi 0.979 0.276 0.404 1.7e-45
TAIR|locus:2059103 828 AT2G19130 [Arabidopsis thalian 0.979 0.282 0.407 1.9e-44
TAIR|locus:2200151 830 SD1-13 "S-domain-1 13" [Arabid 0.970 0.279 0.381 2.6e-36
TAIR|locus:2200908 842 AT1G61610 [Arabidopsis thalian 0.966 0.274 0.363 4.5e-36
TAIR|locus:2141176 849 B120 [Arabidopsis thaliana (ta 0.807 0.227 0.409 3.1e-34
TAIR|locus:2131694 815 AT4G27300 [Arabidopsis thalian 0.949 0.278 0.395 5.9e-34
TAIR|locus:2131684 AT4G27290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 115/256 (44%), Positives = 166/256 (64%)

Query:     1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSG--- 57
             +L DG T+VS+ GSFE+GFFSPG S+NRY+GIWYK + ++TVVWVANR +P+ D SG   
Sbjct:    32 TLKDGDTIVSQGGSFEVGFFSPGGSRNRYLGIWYKKISLQTVVWVANRDSPLYDLSGTLK 91

Query:    58 ---------FQNKS-VVWSANLSKE-----VRIPVVLQLLDSGNLVLRGERDGGSETYLW 102
                      F +++ ++WS++ S       +R P+V Q+LD+GNLV+R    G  + Y+W
Sbjct:    92 VSENGSLCLFNDRNHIIWSSSSSPSSQKASLRNPIV-QILDTGNLVVRNS--GDDQDYIW 148

Query:   103 QSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPSPGNFTWAVERQDNPELMMWKGS 162
             QS DYP D  LPGMK G +  TGL R +TSW++ DDPS GN+T  ++    P+  + K S
Sbjct:   149 QSLDYPGDMFLPGMKYGLNFVTGLNRFLTSWRAIDDPSTGNYTNKMDPNGVPQFFLKKNS 208

Query:   163 RKFQRSGPWNGLKFSAT-SLRPNPIFNFSFVSNEDELYFTIDLIDKAVFSRIVMNQTLYL 221
                 R+GPWNGL+F+   +L+PNPI+ + +V  E+E+Y+T  L + +V +R+ +N    L
Sbjct:   209 VVVFRTGPWNGLRFTGMPNLKPNPIYRYEYVFTEEEVYYTYKLENPSVLTRMQLNPNGAL 268

Query:   222 RQRFTWDKATQSWELY 237
              QR+TW    QSW  Y
Sbjct:   269 -QRYTWVDNLQSWNFY 283
GO:0004672 "protein kinase activity" evidence=IEA;ISS
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0004713 "protein tyrosine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0048544 "recognition of pollen" evidence=IEA
GO:0048765 "root hair cell differentiation" evidence=RCA
TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088619 AT3G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018506 RK2 "receptor kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200151 SD1-13 "S-domain-1 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200908 AT1G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141176 B120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131694 AT4G27300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.254.6.1
hypothetical protein (829 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 1e-28
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 2e-28
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 2e-25
pfam00954110 pfam00954, S_locus_glycop, S-locus glycoprotein fa 2e-14
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information 
 Score =  104 bits (261), Expect = 1e-28
 Identities = 52/121 (42%), Positives = 61/121 (50%), Gaps = 20/121 (16%)

Query: 1   SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGF-- 58
            LS G+TLVS    FELGFF        Y  I YK    +TVVWVANR NP + SS    
Sbjct: 3   PLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSS-RTVVWVANRDNP-SGSSCTLT 60

Query: 59  -----------QNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDY 107
                       + +VVWS+N ++      VL LLD GNLVL          +LWQSFDY
Sbjct: 61  LQSDGNLVIYDGSGTVVWSSNTTRVNG-NYVLVLLDDGNLVLYDSDG----NFLWQSFDY 115

Query: 108 P 108
           P
Sbjct: 116 P 116

The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses. Length = 116
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information
>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|201524 pfam00954, S_locus_glycop, S-locus glycoprotein family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 239
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.93
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.9
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.86
PF00954110 S_locus_glycop: S-locus glycoprotein family; Inter 99.56
smart00108114 B_lectin Bulb-type mannose-specific lectin. 98.16
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 98.05
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 96.89
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information 
Probab=99.93  E-value=1.9e-27  Score=181.95  Aligned_cols=98  Identities=55%  Similarity=0.823  Sum_probs=63.9

Q ss_pred             CCcEEEEecCCCCCCCCCCC---------------cCCcEEEee-cCCCCcccceEEEEecCCCeeeecCCCCCCCeeEE
Q 038555           39 VKTVVWVANRINPINDSSGF---------------QNKSVVWSA-NLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLW  102 (239)
Q Consensus        39 ~~tvvW~Anr~~pv~~~~~~---------------~~~~~vWss-~~~~~~~~~~~~~L~d~GNlvl~~~~~~~~~~~lW  102 (239)
                      ++||||+|||++|+...++.               ..+..+|++ ++.+.......|+|+|+|||||++.    .+.+||
T Consensus         1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~----~~~~lW   76 (114)
T PF01453_consen    1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS----SGNVLW   76 (114)
T ss_dssp             ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET----TSEEEE
T ss_pred             CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee----cceEEE
Confidence            37999999999999532211               445789999 5554431345789999999999985    678999


Q ss_pred             EecCCCccccCCCceecccccCCceeEEEecCCCCCCC
Q 038555          103 QSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPDDPS  140 (239)
Q Consensus       103 qSFd~PTDTlLpgq~l~~~~~tg~~~~L~Sw~s~~dps  140 (239)
                      |||||||||+||||+|+.+..+|.+..|+||++.+||+
T Consensus        77 ~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps  114 (114)
T PF01453_consen   77 QSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS  114 (114)
T ss_dssp             ESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred             eecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence            99999999999999999987777667799999999996

Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 100.0
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 100.0
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.81
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.71
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.71
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.71
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.6
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.27
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 98.98
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 98.97
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 98.86
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 98.7
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 98.67
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 98.53
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 98.43
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 98.43
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 98.32
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 98.16
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 98.14
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 98.13
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 98.11
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 98.07
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 98.0
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 97.57
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=100.00  E-value=2.5e-41  Score=294.45  Aligned_cols=205  Identities=20%  Similarity=0.252  Sum_probs=150.3

Q ss_pred             CCCCCCEEEeCCCeeEEeeecCCCCCceEEEEEEecCCCCcEEEEecCCCCCCCC----CCC---------------cCC
Q 038555            1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDS----SGF---------------QNK   61 (239)
Q Consensus         1 ~l~~~~~l~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~tvvW~Anr~~pv~~~----~~~---------------~~~   61 (239)
                      +|++|++|+|++|.||||||+++   ++||   |+  +++ |||+|||++|+.++    ++.               +.+
T Consensus        22 ~l~~~~~l~S~~g~F~lgf~~~~---~~~l---y~--~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~G~Lvl~~~~~~~   92 (276)
T 3m7h_A           22 TLSAGQYLLSPNQRFKLLLQGDG---NLVI---QD--NGA-TVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSR   92 (276)
T ss_dssp             EBCTTCEEECTTSSEEEEECTTS---CEEE---EE--TTE-EEEECSTTSTTEEEEECCCTTCCSEEEESSSEEEEEGGG
T ss_pred             EecCCCEEEcCCCcEEEEEECCC---CeEE---EC--CCC-eEEECCCCCCcCCcccccceEEEEeCCCcEEEEEeCCCC
Confidence            36789999999999999999443   5676   76  667 99999999999763    322               235


Q ss_pred             cEEEeecCCCCc----ccceEEEEecCCCeeeecCCCCCCCeeEEEecCCCccccCCCceecccccCCceeEEEecCCCC
Q 038555           62 SVVWSANLSKEV----RIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDLKTGLERRITSWKSPD  137 (239)
Q Consensus        62 ~~vWss~~~~~~----~~~~~~~L~d~GNlvl~~~~~~~~~~~lWqSFd~PTDTlLpgq~l~~~~~tg~~~~L~Sw~s~~  137 (239)
                      .+||++++....    .....|+|+|+|||||++      +.+||||  ||||||||||+|+.+.++|..  |   ++..
T Consensus        93 ~~vWst~~~~~~~~~~~~~~~a~L~d~GNlVl~~------~~~lWqS--~ptdtlLpg~~~~~~l~~g~~--L---~S~~  159 (276)
T 3m7h_A           93 RRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVD------SLALWNG--TPAIPLVPGAIDSLLLAPGSE--L---VQGV  159 (276)
T ss_dssp             TEEEEECCCCCCCTTHHHHEEEEECTTSCEEEEE------EEEEEES--CTTSCCCCSCTTCEEECSSEE--E---CTTC
T ss_pred             CEEEEeCCCcccccccCCceEEEEeCCCCEEecC------CceeeCc--ccccccccccccccccccCcc--c---ccCC
Confidence            789999976421    223478999999999996      4699999  999999999999988888855  6   5789


Q ss_pred             CCCCeeeEEEecCCCCceeeEec-CCceeeeeCCCCCccccccCCCCCCceEEEEEEcCC-eEEEEEEeCCCCcEEEEEE
Q 038555          138 DPSPGNFTWAVERQDNPELMMWK-GSRKFQRSGPWNGLKFSATSLRPNPIFNFSFVSNED-ELYFTIDLIDKAVFSRIVM  215 (239)
Q Consensus       138 dps~G~fsl~ld~~g~~~l~~~~-~~~~yw~sg~wng~~f~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~s~~~rl~L  215 (239)
                      ||++|.|+|+|++++.  +++++ +..+||++|+|+..... ..+....  .+.+.++++ .+..++..  .....|++|
T Consensus       160 dps~G~fsl~l~~dGn--lvLy~~~~~~yW~Sgt~~~~~~~-l~l~~dG--nLvl~d~~~~~vWsS~t~--~~~~~rl~L  232 (276)
T 3m7h_A          160 VYGAGASKLVFQGDGN--LVAYGPNGAATWNAGTQGKGAVR-AVFQGDG--NLVVYGAGNAVLWHSHTG--GHASAVLRL  232 (276)
T ss_dssp             EEEETTEEEEECTTSC--EEEECTTSSEEEECCCTTTTCCE-EEECTTS--CEEEECTTSCEEEECSCT--TCTTCEEEE
T ss_pred             CCCCceEEEeecCCce--EEEEeCCCeEEEECCCCCCccEE-EEEcCCC--eEEEEeCCCcEEEEecCC--CCCCEEEEE
Confidence            9999999999998885  55565 46899999998764311 1233222  222444433 44333322  222479999


Q ss_pred             cccCCeEEEEEEcCCCCceEEee
Q 038555          216 NQTLYLRQRFTWDKATQSWELYA  238 (239)
Q Consensus       216 d~dG~~l~~y~w~~~~~~W~~~w  238 (239)
                      +.|| +|++|.|   ...|..++
T Consensus       233 d~dG-nLvly~~---~~~Wqsf~  251 (276)
T 3m7h_A          233 QANG-SIAILDE---KPVWARFG  251 (276)
T ss_dssp             CTTS-CEEEEEE---EEEEESSS
T ss_pred             cCCc-cEEEEcC---CCeEEccC
Confidence            9999 9999998   34566544
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 239
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 8e-11
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 2e-05
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 4e-05
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 6e-05
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 0.004
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 55.3 bits (133), Expect = 8e-11
 Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 25/118 (21%)

Query: 2   LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSSGF--- 58
           L++G  L +   S ++  +     ++  + ++  +    T VW +N              
Sbjct: 4   LTNGEGLYA-GQSLDVEPYHFIMQEDCNLVLYDHS----TSVWASNTGILGKKGCKAVLQ 58

Query: 59  ---------QNKSVVWSANLSKEVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDY 107
                         +W+++  +      VL L + GN+V+ G         +W +  Y
Sbjct: 59  SDGNFVVYDAEGRSLWASHSVRGNG-NYVLVLQEDGNVVIYGSD-------IWSTGTY 108
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.61
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.54
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.54
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.42
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.14
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.1
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.02
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 98.74
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 98.73
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 98.66
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 98.47
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 98.38
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Gastrodianin (antifungal protein)
species: Gastrodia elata [TaxId: 91201]

Probab=99.61  E-value=1.4e-15  Score=112.90  Aligned_cols=93  Identities=17%  Similarity=0.356  Sum_probs=69.8

Q ss_pred             CCCCCEEEeCCCeeEEeeecCCCCCceEEEEEEecCCCCcEEEEecCCCCCCCCC------CC----cCCcEEEeecCCC
Q 038555            2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYKNMPVKTVVWVANRINPINDSS------GF----QNKSVVWSANLSK   71 (239)
Q Consensus         2 l~~~~~l~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~tvvW~Anr~~pv~~~~------~~----~~~~~vWss~~~~   71 (239)
                      |..|++|+  +|.|+|.|+.+++     |.|++    ..++||.||++.|.....      |.    ..+.++|++++..
T Consensus        10 L~~g~~l~--~g~~~l~~q~DGN-----Lvly~----~~~~vW~s~~~~~~~~~~l~l~~dGnLvl~~~~~~~w~s~t~~   78 (112)
T d1xd5a_          10 LDTGGSLA--EGGYLFIIQNDCN-----LVLYD----NNRAVWASGTNGKASGCVLKMQNDGNLVIYSGSRAIWASNTNR   78 (112)
T ss_dssp             ECTTCEEE--ETTEEEEECTTSC-----EEEEE----TTEEEEECCCTTSCSSEEEEECTTSCEEEEETTEEEEECCCCC
T ss_pred             ecCCCEEE--ECCEEEEEcCCCC-----EEEEc----CCcEEEEccCccCCCCcEEEEeccccEEEEecCCeEEEEeecc
Confidence            56788887  4999999998887     55643    368999999988754321      11    3456788887654


Q ss_pred             CcccceEEEEecCCCeeeecCCCCCCCeeEEEecCCCcc
Q 038555           72 EVRIPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSD  110 (239)
Q Consensus        72 ~~~~~~~~~L~d~GNlvl~~~~~~~~~~~lWqSFd~PTD  110 (239)
                      ... ...|+|+|+|||||++.    .+.++|||+.||++
T Consensus        79 ~~~-~~~l~L~ddGNlvly~~----~~~~~W~S~t~~~n  112 (112)
T d1xd5a_          79 QNG-NYYLILQRDRNVVIYDN----SNNAIWATHTNVGN  112 (112)
T ss_dssp             SCC-CCEEEECTTSCEEEECT----TSCEEEECCCCCCC
T ss_pred             CCC-ceEEEEcCCCCEEEECC----CCcEEecCCCccCC
Confidence            332 33679999999999985    46799999999985
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure