Citrus Sinensis ID: 038577

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860
MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK
cccccccccccccccccEEEcccccEEEEcccEEEEEEccccCEEEEcccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEcccEEEEEEcccccccccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccEEcccccccEEEEEEccccccccEEEEEEEEcccEEEEEEECcccccEEEEccccccccccccccCEEEEEcccccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEEEccccccEEEEEEcccccEEEEECccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEccccccccccEEEEEEcccccEEEEEEccccEEEEEEccccccccccccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEECccccEEEEEccccCEEEEEEcccccccccccccccccccccccccEEEEEEcccccEEEEECccccEEEEEccccEEEEEEEccccccEEEEEECccccEEcccccccCEEcccccccccccccccccEECcccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEccccccccccHHHHHHHHcccccEEEEEEHHcccHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccc
MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQN*RNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVG***
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MNYRFQNLLGAPYRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGAKK

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Periodic tryptophan protein 2 homolog probableQ9C1X1
Periodic tryptophan protein 2 homolog probableP91341
Periodic tryptophan protein 2 Required for bud-site selection and cell separation. Also involved in nucleolar processing of pre-18S ribosomal RNA.probableP25635

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 6-226,256-562,583-620,680-709
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Template: 3DM0, chain A
Confidence level:very confident
Coverage over the Query: 298-562,580-610
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Template: 4A11, chain B
Confidence level:very confident
Coverage over the Query: 31-239,252-380
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Template: 3DW8, chain B
Confidence level:confident
Coverage over the Query: 347-654,666-710
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Template: 3DAS, chain A
Confidence level:probable
Coverage over the Query: 51-329
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Template: 1GG2, chain B
Confidence level:probable
Coverage over the Query: 333-505
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Template: 1K8K, chain G
Confidence level:probable
Coverage over the Query: 727-812
View the alignment between query and template
View the model in PyMOL